BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017986
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 188 LAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKA 245
L +L +LT L ++ N L SLP G+ LT L+ L + N+L +LP + L+ L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 246 NNNRISFLPESIGN-CTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTL 303
+N++ LP+ + + T+L E+DLS N L LP + L LK L L N LKS+P +
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV 200
Query: 304 FSKCVQLSTLELHNT--EITMDALRQLEGW 331
F + L + LH+ + T +R L W
Sbjct: 201 FDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 28/151 (18%)
Query: 124 IALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXXXXXXXXXI 183
+ L + L+++P+ V+D ++ L + N +Q +PD +
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV--------------------- 128
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLE 241
KL +LT L+++ N L SLP G+ LT L LD+S N+L +LP + L++L+
Sbjct: 129 ----FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Query: 242 VLKANNNRISFLPESIGN-CTSLIEIDLSSN 271
L+ N++ +P+ + + TSL I L N
Sbjct: 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Query: 195 TVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISF 252
T L + N L SLP G+ LT+L L + NKL +LP + L+ L L + N++
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 253 LPESIGN-CTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCVQL 310
LP + + T L E+ L++N L LP + L LK L L N LKS+P +F + L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 311 STLELHNT--EITMDALRQLEGW 331
+ LH+ + T +R L W
Sbjct: 151 QYIWLHDNPWDCTCPGIRYLSEW 173
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 26/104 (25%)
Query: 123 VIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXXXXXXXXX 182
+ L+ + L+++P+ V+D ++ L + TN +Q +PD +
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV-------------------- 119
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNN 225
KL L L + +N L S+P G+ LT+LQ++ + +N
Sbjct: 120 -----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>pdb|2KD0|A Chain A, Nmr Solution Structure Of O64736 Protein From
Arabidopsis Thaliana. Northeast Structural Genomics
Consortium Mega Target Ar3445a
Length = 85
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%)
Query: 6 IKITVKFCGRPIPITLSPDSXXXXXXXXXXXXXXXXXXGQKLIFKGKVLANEETLGVAGV 65
IK+TVKF G+ IP+++SPD GQKLIFKGKVL TL + V
Sbjct: 13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDV 72
Query: 66 TNGVKLMLIGTQG 78
+G KLML+ +QG
Sbjct: 73 GSGAKLMLMASQG 85
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 14/152 (9%)
Query: 190 KLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGLLSKL---EVLKA 245
+L L +L ++ N L +LP GI L L+ L V++NKL LP IG+ +L L+
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRL 116
Query: 246 NNNRISFLPESIGNC-TSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTL 303
+ N++ LP + + T L + L N L LP + L LK L L NN LK +P
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 304 FSKCVQLSTLELHNTEI------TMDALRQLE 329
F K +L TL+L N ++ D+L +L+
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 218 QHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFLPESI-GNCTSLIEIDLSSNLLSE 275
+ LD+ +NKL++LP++ L+KL +L N+N++ LP I +L + ++ N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 276 LPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEI 320
LP+ + L L L LD N LKSLP +F +L+ L L E+
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 208 PGILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISFLPESIGN-CTSLIE 265
PG+ L L+ L + +N+L LP + L++L VL N+++ LP ++ + L E
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116
Query: 266 IDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSK 306
+ + N L+ELP +E L +L L LD N LKS+P F +
Sbjct: 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 25/108 (23%)
Query: 124 IALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXXXXXXXXXI 183
+ L + L A+P V+D + VLD+ TN + +P +
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV--------------------- 107
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLP 231
+L HL L + N L LP + LT L HL + N+L ++P
Sbjct: 108 ----FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 37/143 (25%)
Query: 193 HLTVLSISRNCLNSLPGILGHL-----------------TALQHLDVSNNKLTTLPTEIG 235
+TVL I++N L SLP + L +L+HLDV NN+LT LP
Sbjct: 81 QITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTXLPE--- 137
Query: 236 LLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNA 295
L + LE + A+NN+++ LPE TSL + + +N L+ LP E+ L+AL + N
Sbjct: 138 LPALLEYINADNNQLTXLPEL---PTSLEVLSVRNNQLTFLPELPES---LEALDVSTNL 191
Query: 296 LKSLP-----------TTLFSKC 307
L+SLP T +F +C
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRC 214
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 191 LKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRI 250
+ + L ++R L+SLP L + L+++ N L +LP L + LE L A +NR+
Sbjct: 58 INQFSELQLNRLNLSSLPDNLPPQITV--LEITQNALISLPE---LPASLEYLDACDNRL 112
Query: 251 SFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQL 310
S LPE SL +D+ +N L+ LP L Y+ A DNN L LP S L
Sbjct: 113 STLPELPA---SLKHLDVDNNQLTXLPELPALLEYINA---DNNQLTXLPELPTS----L 162
Query: 311 STLELHNTEITM 322
L + N ++T
Sbjct: 163 EVLSVRNNQLTF 174
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 21/92 (22%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLP-----------TEIGLLSKLEV 242
L VLS+ N L LP + L AL DVS N L +LP TEI
Sbjct: 162 LEVLSVRNNQLTFLPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETEI-------F 211
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLS 274
+ NRI+ +PE+I + I L N LS
Sbjct: 212 FRCRENRITHIPENILSLDPTCTIILEDNPLS 243
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 191 LKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRI 250
L +L + +IS N L L ++ N LT LP EI LS L VL ++NR+
Sbjct: 231 LSNLQIFNISANIFK--------YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL 282
Query: 251 SFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALK 297
+ LP +G+C L N+++ LP NL L+ L ++ N L+
Sbjct: 283 TSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
+ K LT L ++ N L LP + +L+ L+ LD+S+N+LT+LP E+G +L+
Sbjct: 241 ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSE 275
+N ++ LP GN +L + + N L +
Sbjct: 301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 220 LDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVT 279
LD+SN ++ + I L L N N ++ LP I N ++L +DLS N L+ LP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Query: 280 LENLHYLKALHLDNNALKSLPTTLFSKC 307
L + LK + +N + +LP + C
Sbjct: 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLC 316
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 191 LKHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNN 248
L LT L++ N L +L G+ LT L L ++NN+L +LP + L++L+ L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 249 RISFLPESIGN-CTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTLFSK 306
++ LP + + T L E+ L++N L +P + L L+ L L N L+S+P F +
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 307 CVQLSTLELHNTEI 320
+L T+ L +
Sbjct: 178 LGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 191 LKHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNN 248
L LT L++ N L +L G+ LT L L ++NN+L +LP + L++L+ L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 249 RISFLPESIGN-CTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTLFSK 306
++ LP + + T L E+ L++N L +P + L L+ L L N L+S+P F +
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 307 CVQLSTLELHNTEI 320
+L T+ L +
Sbjct: 178 LGKLQTITLFGNQF 191
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 24/135 (17%)
Query: 188 LAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKAN 246
L +L +LT L ++ N L SLP G+ LT L+ L + N+L +LP G+ KL
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD--GVFDKL------ 132
Query: 247 NNRISFLPESIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTLFS 305
T+L + L N L LP + L L L LDNN L+SLP +F
Sbjct: 133 --------------TNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD 178
Query: 306 KCVQLSTLELHNTEI 320
K QL L L++ ++
Sbjct: 179 KLTQLKQLSLNDNQL 193
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 28/151 (18%)
Query: 124 IALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXXXXXXXXXI 183
+ L + L+++P+ V+D ++ L + N +Q +PD +
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV--------------------- 128
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLE 241
KL +LT L + N L SLP G+ LT L LD+ NN+L +LP + L++L+
Sbjct: 129 ----FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLK 184
Query: 242 VLKANNNRISFLPESIGN-CTSLIEIDLSSN 271
L N+N++ +P+ + + TSL I L +N
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISF 252
L L +S N L SLP + L AL LDVS N+LT+LP + L +L+ L N +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 253 LPESIGNCTSLIE-IDLSSNLLSELPVTLEN-LHYLKALHLDNNALKSLPTTLF 304
LP + T +E + L++N L+ELP L N L L L L N+L ++P F
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
S L LT L++ R L L + G L L LD+S+N+L +LP L L V
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L + NR++ LP +G L L L+ L+L N LK+LP
Sbjct: 105 LDVSFNRLTSLP--LG--------------------ALRGLGELQELYLKGNELKTLPPG 142
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335
L + +L L L N ++T L G ++ D
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISF 252
L L +S N L SLP + L AL LDVS N+LT+LP + L +L+ L N +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 253 LPESIGNCTSLIE-IDLSSNLLSELPVTLEN-LHYLKALHLDNNALKSLPTTLF 304
LP + T +E + L++N L+ELP L N L L L L N+L ++P F
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
S L LT L++ R L L + G L L LD+S+N+L +LP L L V
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L + NR++ LP +G L L L+ L+L N LK+LP
Sbjct: 105 LDVSFNRLTSLP--LG--------------------ALRGLGELQELYLKGNELKTLPPG 142
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335
L + +L L L N ++T L G ++ D
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISF 252
L L +S N L SLP + L AL LDVS N+LT+LP + L +L+ L N +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 253 LPESIGNCTSLIE-IDLSSNLLSELPVTLEN-LHYLKALHLDNNALKSLPTTLF 304
LP + T +E + L++N L+ELP L N L L L L N+L ++P F
Sbjct: 139 LPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
S L LT L++ R L L + G L L LD+S+N+L +LP L L V
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L + NR++ LP +G L L L+ L+L N LK+LP
Sbjct: 105 LDVSFNRLTSLP--LG--------------------ALRGLGELQELYLKGNELKTLPPG 142
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335
L + +L L L N ++T L G ++ D
Sbjct: 143 LLTPTPKLEKLSLANNDLTELPAGLLNGLENLD 175
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISF 252
L L +S N L SLP + L AL LDVS N+LT+LP + L +L+ L N +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 253 LPESIGNCTSLIE-IDLSSNLLSELPVTLEN-LHYLKALHLDNNALKSLPTTLF 304
LP + T +E + L++N L+ELP L N L L L L N+L ++P F
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
S L LT L++ R L L + G L L LD+S+N+L +LP L L V
Sbjct: 46 FSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L + NR++ LP +G L L L+ L+L N LK+LP
Sbjct: 105 LDVSFNRLTSLP--LG--------------------ALRGLGELQELYLKGNELKTLPPG 142
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335
L + +L L L N +T L G ++ D
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISF 252
L L +S N L SLP + L AL LDVS N+LT+LP + L +L+ L N +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 253 LPESIGNCTSLIE-IDLSSNLLSELPVTLEN-LHYLKALHLDNNALKSLPTTLF 304
LP + T +E + L++N L+ELP L N L L L L N+L ++P F
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
S L LT L++ R L L + G L L LD+S+N+L +LP L L V
Sbjct: 46 FSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L + NR++ LP +G L L L+ L+L N LK+LP
Sbjct: 105 LDVSFNRLTSLP--LG--------------------ALRGLGELQELYLKGNELKTLPPG 142
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335
L + +L L L N +T L G ++ D
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISF 252
L L +S N L SLP + L AL LDVS N+LT+LP + L +L+ L N +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 253 LPESIGNCTSLIE-IDLSSNLLSELPVTLEN-LHYLKALHLDNNALKSLPTTLF 304
LP + T +E + L++N L+ELP L N L L L L N+L ++P F
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
S L LT L++ R L L + G L L LD+S+N+L +LP L L V
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L + NR++ LP +G L L L+ L+L N LK+LP
Sbjct: 105 LDVSFNRLTSLP--LG--------------------ALRGLGELQELYLKGNELKTLPPG 142
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335
L + +L L L N ++T L G ++ D
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISF 252
L L +S N L SLP + L AL LDVS N+LT+LP + L +L+ L N +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 253 LPESIGNCTSLIE-IDLSSNLLSELPVTLEN-LHYLKALHLDNNALKSLPTTLF 304
LP + T +E + L++N L+ELP L N L L L L N+L ++P F
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
S L LT L++ R L L + G L L LD+S+N+L +LP L L V
Sbjct: 46 FSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L + NR++ LP +G L L L+ L+L N LK+LP
Sbjct: 105 LDVSFNRLTSLP--LG--------------------ALRGLGELQELYLKGNELKTLPPG 142
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335
L + +L L L N +T L G ++ D
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISF 252
L L +S N L SLP + L AL LDVS N+LT+LP + L +L+ L N +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 253 LPESIGNCTSLIE-IDLSSNLLSELPVTLEN-LHYLKALHLDNNALKSLPTTLF 304
LP + T +E + L++N L+ELP L N L L L L N+L ++P F
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 23/153 (15%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
S L LT L++ R L L + G L L LD+S+N+L +LP L L V
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L + NR++ LP +G L L L+ L+L N LK+LP
Sbjct: 105 LDVSFNRLTSLP--LG--------------------ALRGLGELQELYLKGNELKTLPPG 142
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335
L + +L L L N ++T L G ++ D
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISF 252
L L +S N L SLP + L AL LDVS N+LT+LP + L +L+ L N +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 253 LPESIGNCTSLIE-IDLSSNLLSELPVTLEN-LHYLKALHLDNNALKSLPTTLF 304
LP + T +E + L++N L+ELP L N L L L L N+L ++P F
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
S L LT L++ R L L + G L L LD+S+N+L +LP L L V
Sbjct: 46 FSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L + NR++ LP +G L L L+ L+L N LK+LP
Sbjct: 105 LDVSFNRLTSLP--LG--------------------ALRGLGELQELYLKGNELKTLPPG 142
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335
L + +L L L N +T L G ++ D
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 189 AKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANN 247
L L L +S N L SLP + L AL LDVS N+LT+LP + L +L+ L
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 248 NRISFLPESIGNCTSLIE-IDLSSNLLSELPVTLEN-LHYLKALHLDNNALKSLPTTLF 304
N + LP + T +E + L++N L+ELP L N L L L L N+L ++P F
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 23/153 (15%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
S L LT L++ R L L + G L L LD+S+N+L +LP L L V
Sbjct: 47 FSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 105
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L + NR++ LP +G L L L+ L+L N LK+LP
Sbjct: 106 LDVSFNRLTSLP--LG--------------------ALRGLGELQELYLKGNELKTLPPG 143
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335
L + +L L L N +T L G ++ D
Sbjct: 144 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 176
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 187 QLAKLKHLTVLSISRNCLNS-LPGILGHLTALQHLDVSNNKLT-TLPTEIGLLSKLEVLK 244
+L +K L L + N L +P L + T L + +SNN+LT +P IG L L +LK
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 245 ANNNRISF-LPESIGNCTSLIEIDLSSNLLS 274
+NN S +P +G+C SLI +DL++NL +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 188 LAKLKHLTVLSISRNCLN-SLPGILGHLTALQHLDVSNNKLT-TLPTEIGLLSKLEVLKA 245
L+ L L +S N L+ ++P LG L+ L+ L + N L +P E+ + LE L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 246 NNNRISF-LPESIGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALKSLPTTL 303
+ N ++ +P + NCT+L I LS+N L+ E+P + L L L L NN+
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 304 FSKCVQLSTLELH 316
C L L+L+
Sbjct: 534 LGDCRSLIWLDLN 546
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 26/132 (19%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
V +++ +L L +S N ++ LG +ALQHLD+S NKL+ G S+
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS------GDFSR------ 241
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSE--LPVTLENLHYLKALHLDNNALKSLPTTL 303
+I CT L +++SSN P+ L++L YL +N +P L
Sbjct: 242 ----------AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL--AENKFTGEIPDFL 289
Query: 304 FSKCVQLSTLEL 315
C L+ L+L
Sbjct: 290 SGACDTLTGLDL 301
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 194 LTVLSISRNCLNS-LPGILGHLTALQHLDVSNNKLT-TLPTEIGLLSKLEVLKANNNRI- 250
+ L +S N L+ +P +G + L L++ +N ++ ++P E+G L L +L ++N++
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 251 SFLPESIGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALKSLP 300
+P+++ T L EIDLS+N LS +P + + A L+N L P
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 33/166 (19%)
Query: 188 LAKLKHLTVLSISRNCLNS-LPGILGHLTA-LQHLDVSNNKLTTLPTEIGLLSK-----L 240
L K++ L VL +S N + LP L +L+A L LD+S+N + P L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG-PILPNLCQNPKNTLQ 397
Query: 241 EVLKANNNRISFLPESIGNCTSLIEIDLSSNLLS-------------------------E 275
E+ NN +P ++ NC+ L+ + LS N LS E
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 276 LPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEIT 321
+P L + L+ L LD N L + S C L+ + L N +T
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 207 LPGILGHLTALQHLDVSNNKLT-TLPTEIGLLSKLEVLKANNNRISF-LPESIGNCTSLI 264
+P L + + L L +S N L+ T+P+ +G LSKL LK N + +P+ + +L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 265 EIDLSSN-LLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEIT 321
+ L N L E+P L N L + L NN L + L+ L+L N +
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 187 QLAKLKHLTVLSISRNCLNS-LPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
++ L+ L +L +S N L+ +P + LT L +D+SNN L+ E+G K
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734
Query: 246 NNN 248
NN
Sbjct: 735 LNN 737
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 187 QLAKLKHLTVLSISRNCLNS-LPGILGHLTALQHLDVSNNKLT-TLPTEIGLLSKLEVLK 244
+L +K L L + N L +P L + T L + +SNN+LT +P IG L L +LK
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 245 ANNNRISF-LPESIGNCTSLIEIDLSSNLLS 274
+NN S +P +G+C SLI +DL++NL +
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 188 LAKLKHLTVLSISRNCLN-SLPGILGHLTALQHLDVSNNKLT-TLPTEIGLLSKLEVLKA 245
L+ L L +S N L+ ++P LG L+ L+ L + N L +P E+ + LE L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 246 NNNRISF-LPESIGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALKSLPTTL 303
+ N ++ +P + NCT+L I LS+N L+ E+P + L L L L NN+
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 304 FSKCVQLSTLELH 316
C L L+L+
Sbjct: 531 LGDCRSLIWLDLN 543
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 26/132 (19%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
V +++ +L L +S N ++ LG +ALQHLD+S NKL+ G S+
Sbjct: 191 VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS------GDFSR------ 238
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSE--LPVTLENLHYLKALHLDNNALKSLPTTL 303
+I CT L +++SSN P+ L++L YL +N +P L
Sbjct: 239 ----------AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL--AENKFTGEIPDFL 286
Query: 304 FSKCVQLSTLEL 315
C L+ L+L
Sbjct: 287 SGACDTLTGLDL 298
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 194 LTVLSISRNCLNS-LPGILGHLTALQHLDVSNNKLT-TLPTEIGLLSKLEVLKANNNRI- 250
+ L +S N L+ +P +G + L L++ +N ++ ++P E+G L L +L ++N++
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 251 SFLPESIGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALKSLP 300
+P+++ T L EIDLS+N LS +P + + A L+N L P
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 741
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 33/166 (19%)
Query: 188 LAKLKHLTVLSISRNCLNS-LPGILGHLTA-LQHLDVSNNKLTTLPTEIGLLSK-----L 240
L K++ L VL +S N + LP L +L+A L LD+S+N + P L
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG-PILPNLCQNPKNTLQ 394
Query: 241 EVLKANNNRISFLPESIGNCTSLIEIDLSSNLLS-------------------------E 275
E+ NN +P ++ NC+ L+ + LS N LS E
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 276 LPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEIT 321
+P L + L+ L LD N L + S C L+ + L N +T
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 207 LPGILGHLTALQHLDVSNNKLT-TLPTEIGLLSKLEVLKANNNRISF-LPESIGNCTSLI 264
+P L + + L L +S N L+ T+P+ +G LSKL LK N + +P+ + +L
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 265 EIDLSSN-LLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEIT 321
+ L N L E+P L N L + L NN L + L+ L+L N +
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 187 QLAKLKHLTVLSISRNCLNS-LPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
++ L+ L +L +S N L+ +P + LT L +D+SNN L+ E+G K
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 731
Query: 246 NNN 248
NN
Sbjct: 732 LNN 734
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 24/124 (19%)
Query: 195 TVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISF 252
T L + N L SLP G+ LT L L +S N++ +LP + L+KL +L + N++
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 253 LPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLST 312
LP + + L LK L LD N LKS+P +F + L
Sbjct: 91 LPNGV----------------------FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128
Query: 313 LELH 316
+ LH
Sbjct: 129 IWLH 132
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 227 LTTLPTEIGLLSKLEVLKANNNRISFLPESIGN-CTSLIEIDLSSNLLSELP-VTLENLH 284
LT++PT G+ S L+ +N++ LP + + T L ++ LS N + LP + L
Sbjct: 19 LTSVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76
Query: 285 YLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEI 320
L L+L N L+SLP +F K QL L L ++
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPT 301
++ N+ ++ +P I +S ++L SN L LP + L L L L N ++SLP
Sbjct: 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 302 TLFSKCVQLSTLELHNTEI------TMDALRQLE 329
+F K +L+ L LH ++ D L QL+
Sbjct: 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 33/143 (23%)
Query: 103 RDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQI 162
+ + VP G SS + L + L+++P V+D + L + N IQ +PD +
Sbjct: 17 KGLTSVPTGIPSS-----ATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV 71
Query: 163 XXXXXXXXXXXXXXXXXXXXISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLD 221
KL LT+L + N L SLP G+ LT L+ L
Sbjct: 72 -------------------------FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106
Query: 222 VSNNKLTTLPTEIGLLSKLEVLK 244
+ N+L ++P G+ +L L+
Sbjct: 107 LDTNQLKSVPD--GIFDRLTSLQ 127
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 26/117 (22%)
Query: 124 IALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXXXXXXXXXI 183
++L+++ ++++PD V+D + +L + N +Q +P+ +
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV--------------------- 95
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGLLSK 239
KL L L++ N L S+P GI LT+LQ + + N I LS+
Sbjct: 96 ----FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 148
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 265 EIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEI 320
EI +S L+ +P + + L L++N L+SLP +F K QL+ L L +I
Sbjct: 11 EIRCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI 64
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 60/124 (48%), Gaps = 26/124 (20%)
Query: 194 LTVLSISRNCLNSLPGILGHL-----------------TALQHLDVSNNKLTTLPTEIGL 236
L LS+S N L SLP + L + LQ L VS+N+L +LPT L
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT---L 199
Query: 237 LSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNAL 296
S+L L A NNR++ LP + L E+ +S N L+ LPV LK L + N L
Sbjct: 200 PSELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTSLPVLPSE---LKELMVSGNRL 253
Query: 297 KSLP 300
SLP
Sbjct: 254 TSLP 257
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL 253
L L I N L SLP + LQ L VS+N+L +LP L S+L L A NN+++ L
Sbjct: 123 LCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTSL 176
Query: 254 PESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPT 301
P + L E+ +S N L+ LP L+ L A NN L SLP
Sbjct: 177 PML---PSGLQELSVSDNQLASLPTLPSELYKLWAY---NNRLTSLPA 218
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL 253
L L +S N L SLP + L + L VS N+LT+LP L S L L N+++ L
Sbjct: 223 LKELIVSGNRLTSLPVLPSEL---KELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRL 276
Query: 254 PESIGNCTSLIEIDLSSNLLSE 275
PES+ + +S ++L N LSE
Sbjct: 277 PESLIHLSSETTVNLEGNPLSE 298
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 187 QLAKL----KHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEV 242
QLA L L L N L SLP + + L+ L VS N+LT+LP L S+L+
Sbjct: 192 QLASLPTLPSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPV---LPSELKE 245
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNAL 296
L + NR++ LP + L+ + + N L+ LP +L +L ++L+ N L
Sbjct: 246 LMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 193 HLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISF 252
H+T L I N L SLP + L + L+VS N+LT+LP L +L + +N ++
Sbjct: 62 HITTLVIPDNNLTSLPALPPEL---RTLEVSGNQLTSLPVLPPGLLELSIF---SNPLTH 115
Query: 253 LPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLST 312
LP + L ++ + N L+ LPV L+ L + +N L SLP C
Sbjct: 116 LP---ALPSGLCKLWIFGNQLTSLPVLPPG---LQELSVSDNQLASLPALPSELC----K 165
Query: 313 LELHNTEIT 321
L +N ++T
Sbjct: 166 LWAYNNQLT 174
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLE 241
+ W L HL VL ++ N LNSLP G+ HLTAL+ L +++N+LT L + L + LE
Sbjct: 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL-SHNDLPANLE 529
Query: 242 VLKANNNRI 250
+L + N++
Sbjct: 530 ILDISRNQL 538
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 199 ISRNCLNSLPGILGHLTA-LQHLDVSNNKLTTLPTEIGLLS--KLEVLKANNNRISFLP- 254
+S N L +LP I +LTA L HL S N+L L LL L++L N NR S
Sbjct: 388 LSGNKLVTLPKI--NLTANLIHL--SENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443
Query: 255 -ESIGNCTSLIEIDLSSNLL-----SELPV-TLENLHYLKALHLDNNALKSLPTTLFSKC 307
++ SL ++ L N+L +EL E L +L+ L+L++N L SLP +FS
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503
Query: 308 VQLSTLELHNTEITM 322
L L L++ +T+
Sbjct: 504 TALRGLSLNSNRLTV 518
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 11/110 (10%)
Query: 191 LKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRI 250
LK L V + + L+ LP +L ++L VSNN+L LP E+ S L+++ +NN +
Sbjct: 113 LKSLLVDNNNLKALSDLPPLL------EYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSL 165
Query: 251 SFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLP 300
LP+ SL I +N L ELP L+NL +L A++ DNN+LK LP
Sbjct: 166 KKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP 211
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 86/203 (42%), Gaps = 40/203 (19%)
Query: 123 VIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXXXXXXXXX 182
+ ++ + L+ +P E+ + S F++++D+ NS++ +PD
Sbjct: 135 YLGVSNNQLEKLP-ELQNSS-FLKIIDVDNNSLKKLPD-------LPPSLEFIAAGNNQL 185
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLP-------------GILGHLTALQHLD------VS 223
+L L LT + N L LP IL L LQ+L
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245
Query: 224 NNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNL---LSELPVTL 280
NN L TLP L LE L +N ++ LPE SL +D+S N+ LSELP
Sbjct: 246 NNLLKTLP---DLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPP-- 297
Query: 281 ENLHYLKALHLDNNALKSLPTTL 303
NL+YL A + +L LP +L
Sbjct: 298 -NLYYLNASSNEIRSLCDLPPSL 319
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 39/142 (27%)
Query: 192 KHLTVLSISRNC---LNSLPGILGHLTA--------------LQHLDVSNNKLTTLPTEI 234
+ LT L +S N L+ LP L +L A L+ L+VSNNKL LP
Sbjct: 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP--- 333
Query: 235 GLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSE---LPVTLENLHY------ 285
L +LE L A+ N ++ +PE N L ++ + N L E +P ++E+L
Sbjct: 334 ALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390
Query: 286 -------LKALHLDNNALKSLP 300
LK LH++ N L+ P
Sbjct: 391 VPELPQNLKQLHVETNPLREFP 412
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 34/145 (23%)
Query: 187 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKAN 246
+L L LT + N L +LP + L AL +V +N LT LP L+ L+V +
Sbjct: 232 ELQNLPFLTTIYADNNLLKTLPDLPPSLEAL---NVRDNYLTDLPELPQSLTFLDVSENI 288
Query: 247 NNRISFLPESIGNCT--------------SLIEIDLSSNLLSELPV---TLENL------ 283
+ +S LP ++ SL E+++S+N L ELP LE L
Sbjct: 289 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNH 348
Query: 284 --------HYLKALHLDNNALKSLP 300
LK LH++ N L+ P
Sbjct: 349 LAEVPELPQNLKQLHVEYNPLREFP 373
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 218 QHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELP 277
L+++N L++LP L LE L A+ N ++ LPE + SL+ + + LS+LP
Sbjct: 74 HELELNNLGLSSLPE---LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130
Query: 278 VTLE----------------NLHYLKALHLDNNALKSLP 300
LE N +LK + +DNN+LK LP
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 169
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 191 LKHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTLPTEIGL-LSKLEVLKANNN 248
L L L + R L L PG+ L ALQ+L + +N L LP + L L L + N
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163
Query: 249 RISFLPE-SIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSK 306
RIS +PE + SL + L N ++ + P +L L L+L N L +LPT +
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223
Query: 307 CVQLSTLELHNTEITMDA-LRQLEGW 331
L L L++ D R L W
Sbjct: 224 LRALQYLRLNDNPWVCDCRARPLWAW 249
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
Query: 232 TEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALH 290
T + LL +L+ L N S P + L + L L EL P L L+ L+
Sbjct: 77 TGLALLEQLD-LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 291 LDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDK----RRRAKHQKQL 346
L +NAL++LP F L+ L LH I+ R G D+ + R H
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 347 DFRVMG 352
FR +G
Sbjct: 196 AFRDLG 201
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 191 LKHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNN 248
L L L + R L L PG+ L ALQ+L + +N L LP + L L L + N
Sbjct: 103 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 162
Query: 249 RISFLPE-SIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSK 306
RIS +PE + SL + L N ++ + P +L L L+L N L +LPT +
Sbjct: 163 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 222
Query: 307 CVQLSTLELHNTEITMDA-LRQLEGW 331
L L L++ D R L W
Sbjct: 223 LRALQYLRLNDNPWVCDCRARPLWAW 248
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
Query: 232 TEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALH 290
T + LL +L+ L N S P + L + L L EL P L L+ L+
Sbjct: 76 TGLALLEQLD-LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 291 LDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDK----RRRAKHQKQL 346
L +NAL++LP F L+ L LH I+ R G D+ + R H
Sbjct: 135 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 347 DFRVMG 352
FR +G
Sbjct: 195 AFRDLG 200
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 69/158 (43%), Gaps = 32/158 (20%)
Query: 191 LKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNN 248
L HL+ L ++ N + SL G L++LQ L L +L IG L L+ L +N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 249 RI-SF-LPESIGNCTSLIEIDLSSNLLSELPVT-LENLHY-------------------- 285
I SF LPE N T+L +DLSSN + + T L LH
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 286 -------LKALHLDNNALKSLPTTLFSKCVQLSTLELH 316
LK L LD N LKS+P +F + L + LH
Sbjct: 197 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 234
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 69/158 (43%), Gaps = 32/158 (20%)
Query: 191 LKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNN 248
L HL+ L ++ N + SL G L++LQ L L +L IG L L+ L +N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 249 RI-SF-LPESIGNCTSLIEIDLSSNLLSELPVT-LENLHY-------------------- 285
I SF LPE N T+L +DLSSN + + T L LH
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 286 -------LKALHLDNNALKSLPTTLFSKCVQLSTLELH 316
LK L LD N LKS+P +F + L + LH
Sbjct: 196 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 233
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 69/158 (43%), Gaps = 32/158 (20%)
Query: 191 LKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNN 248
L HL+ L ++ N + SL G L++LQ L L +L IG L L+ L +N
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 249 RI-SF-LPESIGNCTSLIEIDLSSNLLSELPVT-LENLHY-------------------- 285
I SF LPE N T+L +DLSSN + + T L LH
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 286 -------LKALHLDNNALKSLPTTLFSKCVQLSTLELH 316
LK L LD N LKS+P +F + L + LH
Sbjct: 196 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 233
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 69/158 (43%), Gaps = 32/158 (20%)
Query: 191 LKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNN 248
L HL+ L ++ N + SL G L++LQ L L +L IG L L+ L +N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 249 RI-SF-LPESIGNCTSLIEIDLSSNLLSELPVT-LENLHY-------------------- 285
I SF LPE N T+L +DLSSN + + T L LH
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 286 -------LKALHLDNNALKSLPTTLFSKCVQLSTLELH 316
LK L LD N LKS+P +F + L + LH
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 69/158 (43%), Gaps = 32/158 (20%)
Query: 191 LKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNN 248
L HL+ L ++ N + SL G L++LQ L L +L IG L L+ L +N
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHN 136
Query: 249 RI-SF-LPESIGNCTSLIEIDLSSNLLSELPVT-LENLHY-------------------- 285
I SF LPE N T+L +DLSSN + + T L LH
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 286 -------LKALHLDNNALKSLPTTLFSKCVQLSTLELH 316
LK L LD N LKS+P +F + L + LH
Sbjct: 197 GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 234
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 195 TVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL 253
TV+ S L LP GI +T L +LD N+ T +P E+ L ++ +NNRIS L
Sbjct: 13 TVVRCSNKGLKVLPKGIPRDVTEL-YLD--GNQFTLVPKELSNYKHLTLIDLSNNRISTL 69
Query: 254 P-ESIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLS 311
+S N T L+ + LS N L +P T + L L+ L L N + +P F+ LS
Sbjct: 70 SNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129
Query: 312 TLELHNTEITMDA-LRQLEGW 331
L + + D ++ L W
Sbjct: 130 HLAIGANPLYCDCNMQWLSDW 150
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 191 LKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNN 248
L+HL +L +S+N + + G L +L L++ +N+LTT+PT+ LSKL L NN
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 249 RISFLPESIGN-CTSLIEIDLSS----NLLSELPVTLENLHYLKALHLDNNALKSLPTTL 303
I +P N SL +DL +SE E L L+ L+L LK +P
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISE--AAFEGLVNLRYLNLGMCNLKDIPN-- 173
Query: 304 FSKCVQLSTLEL 315
+ V+L LEL
Sbjct: 174 LTALVRLEELEL 185
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 218 QHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFLPESIGN-CTSLIEIDLSSNLLSE 275
++L++ N + + T+ L LE+L+ + N + + N SL ++L N L+
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 276 LPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLEL 315
+P E L L+ L L NN ++S+P+ F++ L L+L
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 85/199 (42%), Gaps = 27/199 (13%)
Query: 122 GVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXXXXXXXX 181
+ L ++ L +P + ++ +R L +R N I+ +P
Sbjct: 86 NTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSY--------------AFNRVP 131
Query: 182 XISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLE 241
+ + L +LK L +S L L++L++ L +P L+ +LE
Sbjct: 132 SLRRLDLGELKRLEYIS---------EAAFEGLVNLRYLNLGMCNLKDIPNLTALV-RLE 181
Query: 242 VLKANNNRISFL-PESIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSL 299
L+ + NR+ + P S TSL ++ L ++ + ++L L+ L+L +N L SL
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSL 241
Query: 300 PTTLFSKCVQLSTLEL-HN 317
P LF+ +L + L HN
Sbjct: 242 PHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 11/132 (8%)
Query: 191 LKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNN 248
L+HL +L +S+N + + G L +L L++ +N+LTT+PT+ LSKL L NN
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 249 RISFLPESIGN-CTSLIEIDLSS----NLLSELPVTLENLHYLKALHLDNNALKSLPTTL 303
I +P N SL +DL +SE E L L+ L+L LK +P
Sbjct: 118 PIESIPSYAFNRVPSLRRLDLGELKRLEYISE--AAFEGLVNLRYLNLGMCNLKDIPN-- 173
Query: 304 FSKCVQLSTLEL 315
+ V+L LEL
Sbjct: 174 LTALVRLEELEL 185
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 27/197 (13%)
Query: 124 IALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXXXXXXXXXI 183
+ L ++ L +P + ++ +R L +R N I+ +P +
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSY--------------AFNRVPSL 133
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVL 243
+ L +LK L +S L L++L++ L +P L+ +LE L
Sbjct: 134 RRLDLGELKRLEYIS---------EAAFEGLVNLRYLNLGMCNLKDIPNLTALV-RLEEL 183
Query: 244 KANNNRISFL-PESIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPT 301
+ + NR+ + P S TSL ++ L ++ + ++L L+ L+L +N L SLP
Sbjct: 184 ELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPH 243
Query: 302 TLFSKCVQLSTLEL-HN 317
LF+ +L + L HN
Sbjct: 244 DLFTPLHRLERVHLNHN 260
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 218 QHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFLPESIGN-CTSLIEIDLSSNLLSE 275
++L++ N + + T+ L LE+L+ + N + + N SL ++L N L+
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 276 LPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLEL 315
+P E L L+ L L NN ++S+P+ F++ L L+L
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L+ L L LS S N + L L +LT L+ LD+S+NK++ + + + L+ LE L A N
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP-LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATN 204
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSL-PTTLFSK 306
N+IS + +G T+L E+ L+ N L ++ TL +L L L L NN + +L P + +K
Sbjct: 205 NQISDI-TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTK 262
Query: 307 CVQL 310
+L
Sbjct: 263 LTEL 266
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L L +L LS++ N L + G L LT L LD++NN+++ L G L+KL LK
Sbjct: 213 LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGA 270
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSEL-PVT-LENLHYLKALHLDN 293
N+IS + G T+L ++L+ N L ++ P++ L+NL YL L+ +N
Sbjct: 271 NQISNISPLAG-LTALTNLELNENQLEDISPISNLKNLTYL-TLYFNN 316
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
V L +T L R + S+ G+ +L L ++ SNN+LT + T + L+KL +
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILM 92
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFS 305
NNN+I+ + + N T+L + L +N ++++ L+NL L L L +N + + + S
Sbjct: 93 NNNQIADI-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI--SALS 148
Query: 306 KCVQLSTLELHNTEIT 321
L L + ++T
Sbjct: 149 GLTSLQQLSFSSNQVT 164
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L+ L L LS S N + L L +LT L+ LD+S+NK++ + + + L+ LE L A N
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKP-LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATN 204
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSL-PTTLFSK 306
N+IS + +G T+L E+ L+ N L ++ TL +L L L L NN + +L P + +K
Sbjct: 205 NQISDI-TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTK 262
Query: 307 CVQL 310
+L
Sbjct: 263 LTEL 266
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L L +L LS++ N L + G L LT L LD++NN+++ L G L+KL LK
Sbjct: 213 LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGA 270
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSEL-PVT-LENLHYLKALHLDN 293
N+IS + G T+L ++L+ N L ++ P++ L+NL YL L+ +N
Sbjct: 271 NQISNISPLAG-LTALTNLELNENQLEDISPISNLKNLTYL-TLYFNN 316
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
V L +T L R + S+ G+ +L L ++ SNN+LT + T + L+KL +
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILM 92
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFS 305
NNN+I+ + + N T+L + L +N ++++ L+NL L L L +N + + + S
Sbjct: 93 NNNQIADI-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI--SALS 148
Query: 306 KCVQLSTLELHNTEIT 321
L L + ++T
Sbjct: 149 GLTSLQQLSFSSNQVT 164
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 65/113 (57%), Gaps = 4/113 (3%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
LA L +L VL + N + ++ + G LT LQ+L + N +++ L T + LSKL LKA++
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAG-LTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADD 182
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLP 300
N+IS + + + +LIE+ L +N +S++ L N L + L N + + P
Sbjct: 183 NKISDI-SPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQP 233
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
LA L +L VL + N + ++ + G LT LQ+L + NN++ L T + LSKL L+A++
Sbjct: 131 LAGLSNLQVLYLDLNQITNISPLAG-LTNLQYLSIGNNQVNDL-TPLANLSKLTTLRADD 188
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSEL 276
N+IS + + + +LIE+ L N +S++
Sbjct: 189 NKISDI-SPLASLPNLIEVHLKDNQISDV 216
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L+ L L L+ S N + L L +LT L+ LD+S+NK++ + + + L+ LE L A N
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATN 204
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSL-PTTLFSK 306
N+IS + +G T+L E+ L+ N L ++ TL +L L L L NN + +L P + +K
Sbjct: 205 NQISDI-TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTK 262
Query: 307 CVQL 310
+L
Sbjct: 263 LTEL 266
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L L +L LS++ N L + G L LT L LD++NN+++ L G L+KL LK
Sbjct: 213 LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGA 270
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSEL-PVT-LENLHYLKALHLDN 293
N+IS + G T+L ++L+ N L ++ P++ L+NL YL L+ +N
Sbjct: 271 NQISNISPLAG-LTALTNLELNENQLEDISPISNLKNLTYL-TLYFNN 316
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
V L +T L R + S+ G+ +L L ++ SNN+LT + T + L+KL +
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILM 92
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFS 305
NNN+I+ + + N T+L + L +N ++++ L+NL L L L +N + + + S
Sbjct: 93 NNNQIADI-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI--SALS 148
Query: 306 KCVQLSTLELHNTEIT 321
L L + ++T
Sbjct: 149 GLTSLQQLNFSSNQVT 164
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 237 LSKLEVLKANNNRI--SFLPESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDN 293
LS LEVLK N +FLP+ +L +DLS L +L P +L L+ L++ +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 294 NALKSLPTTLFSKCVQLSTLELH 316
N LKS+P +F + L + LH
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLH 526
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 188 LAKLKHLTVLSISRNCLNS--LPGILGHLTALQHLDVSNNKLTTL 230
+ LK L L+++ N + S LP +LT L+HLD+S+NK+ ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 200 SRNCLNSLPGILGHLTALQHLDVSNNKLTTLP-TEIGLLSKLEVLKANNNRISFLPE-SI 257
S LNS+P G A++ LD+SNN++T + +++ L+ L +N I+ + E S
Sbjct: 39 SSGSLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96
Query: 258 GNCTSLIEIDLSSNLLSELPVT-LENLHYLKALHLDNNALKSL-PTTLFSKCVQLSTLEL 315
+ SL +DLS N LS L + + L L L+L N K+L T+LFS +L L +
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156
Query: 316 HNTEITMDALRQLE 329
N MD +++
Sbjct: 157 GN----MDTFTKIQ 166
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 200 SRNCLNSLPGILGHLTALQHLDVSNNKLTTLP-TEIGLLSKLEVLKANNNRISFLPE-SI 257
S LNS+P G A++ LD+SNN++T + +++ L+ L +N I+ + E S
Sbjct: 13 SSGSLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 70
Query: 258 GNCTSLIEIDLSSNLLSELPVT-LENLHYLKALHLDNNALKSL-PTTLFSKCVQLSTLEL 315
+ SL +DLS N LS L + + L L L+L N K+L T+LFS +L L +
Sbjct: 71 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 130
Query: 316 HNTEITMDALRQLEGWD 332
N MD +++ D
Sbjct: 131 GN----MDTFTKIQRKD 143
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSK-LEVLKAN 246
L LK+LT + IS+N +S+P +++L++S+ ++ ++ G + K LE+L +
Sbjct: 383 LLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSV---TGCIPKTLEILDVS 439
Query: 247 NNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSK 306
NN ++ N L E+ +S N L LP L L L + N LKS+P +F +
Sbjct: 440 NNNLN---LFSLNLPQLKELYISRNKLMTLP-DASLLPMLLVLKISRNQLKSVPDGIFDR 495
Query: 307 CVQLSTLELH 316
L + LH
Sbjct: 496 LTSLQKIWLH 505
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSS 270
L +LT L+ LD+S+NK++ + + + L+ LE L A NN+IS + +G T+L E+ L+
Sbjct: 172 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNG 229
Query: 271 NLLSELPVTLENLHYLKALHLDNNALKSL-PTTLFSKCVQL 310
N L ++ TL +L L L L NN + +L P + +K +L
Sbjct: 230 NQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 269
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L L +L LS++ N L + G L LT L LD++NN+++ L G L+KL LK
Sbjct: 216 LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGA 273
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSEL-PVT-LENLHYLKALHLDN 293
N+IS + G T+L ++L+ N L ++ P++ L+NL YL L+ +N
Sbjct: 274 NQISNISPLAG-LTALTNLELNENQLEDISPISNLKNLTYL-TLYFNN 319
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
V L +T L R + S+ G+ +L L ++ SNN+LT + T + L+KL +
Sbjct: 39 VSQTDLDQVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILM 96
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSL 299
NNN+I+ + + N T+L + L +N ++++ L+NL L L L +N + +
Sbjct: 97 NNNQIADI-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI 148
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L LK+LT L ISRN + +P ++ L++S+ + + T I LEVL +N
Sbjct: 409 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSN 466
Query: 248 NRIS----FLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTL 303
N + FLP L E+ +S N L LP L + + +N LKS+P +
Sbjct: 467 NNLDSFSLFLPR-------LQELYISRNKLKTLP-DASLFPVLLVMKIASNQLKSVPDGI 518
Query: 304 FSKCVQLSTLELH 316
F + L + LH
Sbjct: 519 FDRLTSLQKIWLH 531
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL 253
L VL +S N L+S L L Q L +S NKL TLP + L L V+K +N++ +
Sbjct: 459 LEVLDVSNNNLDSFSLFLPRL---QELYISRNKLKTLP-DASLFPVLLVMKIASNQLKSV 514
Query: 254 PESIGN-CTSLIEIDLSSN 271
P+ I + TSL +I L +N
Sbjct: 515 PDGIFDRLTSLQKIWLHTN 533
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSS 270
L +LT L+ LD+S+NK++ + + + L+ LE L A NN+IS + +G T+L E+ L+
Sbjct: 168 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNG 225
Query: 271 NLLSELPVTLENLHYLKALHLDNNALKSL-PTTLFSKCVQL 310
N L ++ TL +L L L L NN + +L P + +K +L
Sbjct: 226 NQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 265
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L L +L LS++ N L + G L LT L LD++NN+++ L G L+KL LK
Sbjct: 212 LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGA 269
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSEL-PVT-LENLHYLKALHLDN 293
N+IS + G T+L ++L+ N L ++ P++ L+NL YL L+ +N
Sbjct: 270 NQISNISPLAG-LTALTNLELNENQLEDISPISNLKNLTYL-TLYFNN 315
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
V L +T L R + S+ G+ +L L ++ SNN+LT + T + L+KL +
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILM 92
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSL 299
NNN+I+ + + N T+L + L +N ++++ L+NL L L L +N + +
Sbjct: 93 NNNQIADI-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI 144
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSS 270
L +LT L+ LD+S+NK++ + + + L+ LE L A NN+IS + +G T+L E+ L+
Sbjct: 173 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNG 230
Query: 271 NLLSELPVTLENLHYLKALHLDNNALKSL-PTTLFSKCVQL 310
N L ++ TL +L L L L NN + +L P + +K +L
Sbjct: 231 NQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 270
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L L +L LS++ N L + G L LT L LD++NN+++ L G L+KL LK
Sbjct: 217 LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGA 274
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSEL-PVT-LENLHYLKALHLDN 293
N+IS + G T+L ++L+ N L ++ P++ L+NL YL L+ +N
Sbjct: 275 NQISNISPLAG-LTALTNLELNENQLEDISPISNLKNLTYL-TLYFNN 320
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
V L +T L R + S+ G+ +L L ++ SNN+LT + T + L+KL +
Sbjct: 40 VSQTDLDQVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILM 97
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSL 299
NNN+I+ + + N T+L + L +N ++++ L+NL L L L +N + +
Sbjct: 98 NNNQIADI-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI 149
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSS 270
L +LT L+ LD+S+NK++ + + + L+ LE L A NN+IS + +G T+L E+ L+
Sbjct: 168 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNG 225
Query: 271 NLLSELPVTLENLHYLKALHLDNNALKSL-PTTLFSKCVQL 310
N L ++ TL +L L L L NN + +L P + +K +L
Sbjct: 226 NQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 265
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L L +L LS++ N L + G L LT L LD++NN+++ L G L+KL LK
Sbjct: 212 LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGA 269
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSEL-PVT-LENLHYLKALHLDN 293
N+IS + G T+L ++L+ N L ++ P++ L+NL YL L+ +N
Sbjct: 270 NQISNISPLAG-LTALTNLELNENQLEDISPISNLKNLTYL-TLYFNN 315
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
V L +T L R + S+ G+ +L L ++ SNN+LT + T + L+KL +
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILM 92
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSL 299
NNN+I+ + + N T+L + L +N ++++ L+NL L L L +N + +
Sbjct: 93 NNNQIADI-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI 144
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L LK+LT L ISRN + +P ++ L++S+ + + T I LEVL +N
Sbjct: 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSN 440
Query: 248 NRIS----FLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTL 303
N + FLP L E+ +S N L LP L + + N LKS+P +
Sbjct: 441 NNLDSFSLFLPR-------LQELYISRNKLKTLP-DASLFPVLLVMKISRNQLKSVPDGI 492
Query: 304 FSKCVQLSTLELH 316
F + L + LH
Sbjct: 493 FDRLTSLQKIWLH 505
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL 253
L VL +S N L+S L L Q L +S NKL TLP + L L V+K + N++ +
Sbjct: 433 LEVLDVSNNNLDSFSLFLPRL---QELYISRNKLKTLP-DASLFPVLLVMKISRNQLKSV 488
Query: 254 PESIGN-CTSLIEIDLSSN 271
P+ I + TSL +I L +N
Sbjct: 489 PDGIFDRLTSLQKIWLHTN 507
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 208 PGILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISFLPE-SIGNCTSLIE 265
PG+ HL LQ L ++NKLT +PT + L++L L N+N + +P + N SL
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109
Query: 266 IDLSSN 271
I L +N
Sbjct: 110 IYLYNN 115
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 220 LDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL-PESIGNCTSLIEIDLSSNLLSELPV 278
++ N +L ++P G+ + + L NNN+I+ L P + +L ++ +SN L+ +P
Sbjct: 17 VNCQNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT 74
Query: 279 -TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHN 317
+ L L L L++N LKS+P F L+ + L+N
Sbjct: 75 GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 242 VLKANNNRISFLPESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLP 300
++ N R++ +P I T + L++N +++L P ++L L+ L+ ++N L ++P
Sbjct: 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 301 TTLFSKCVQLSTLELHNTEI 320
T +F K QL+ L+L++ +
Sbjct: 74 TGVFDKLTQLTQLDLNDNHL 93
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKAN 246
L K K L L N L G L L+++ N++T +P G ++E L
Sbjct: 326 LQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385
Query: 247 NNRISFLPESIGNCTSLI---EIDLSSNLLSEL---------PVTLENLHYLKALHLDNN 294
+N++ ++P +I + S+ ID S N + + P + ++ + +++L NN
Sbjct: 386 HNKLKYIP-NIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN-VSSINLSNN 443
Query: 295 ALKSLPTTLFSKCVQLSTLELHN---TEITMDALR 326
+ P LFS LS++ L TEI ++L+
Sbjct: 444 QISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLK 478
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 11/163 (6%)
Query: 191 LKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNN 248
L+HL +L +SRN + ++ G L L L++ +N+LTT+P LSKL+ L NN
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Query: 249 RISFLPESIGN-CTSLIEIDLSS----NLLSELPVTLENLHYLKALHLDNNALKSLPTTL 303
I +P N SL +DL + +SE E L L+ L+L L+ +P
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLREIPN-- 202
Query: 304 FSKCVQLSTLELHNTEITMDALRQLEGWDDFDKRRRAKHQKQL 346
+ ++L L+L ++ +G K + Q Q+
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 210 ILGHLTAL---QHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEI 266
+L HL L HLD+S+N+L LP + L LEVL+A++N + + + + N L E+
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQEL 513
Query: 267 DLSSNLLSE 275
L +N L +
Sbjct: 514 LLCNNRLQQ 522
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
L +L +T L +S N L +LP L L L+ L S+N L + + L +L+ L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLL 515
Query: 246 NNNRI--SFLPESIGNCTSLIEIDLSSNLLSE 275
NNR+ S + + +C L+ ++L N L +
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 210 ILGHLTAL---QHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEI 266
+L HL L HLD+S+N+L LP + L LEVL+A++N + + + + N L E+
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQEL 513
Query: 267 DLSSNLLSE 275
L +N L +
Sbjct: 514 LLCNNRLQQ 522
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 186 VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
L +L +T L +S N L +LP L L L+ L S+N L + + L +L+ L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLL 515
Query: 246 NNNRI--SFLPESIGNCTSLIEIDLSSNLLSE 275
NNR+ S + + +C L+ ++L N L +
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 194 LTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRIS 251
LTVL + RN L+SLP GI + L L +SNN L + + + L+ L+ ++NR++
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Query: 252 FLPESIGNCTSLIEIDLSSNLLSEL--PVTLENL 283
+ S+ SL ++S NLLS L P+ +E L
Sbjct: 185 HVDLSL--IPSLFHANVSYNLLSTLAIPIAVEEL 216
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGL-LSKLEVLKANNNRISF 252
LT+L + N L +L + L +D+S N+L + + + +LE L +NNR+
Sbjct: 234 LTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292
Query: 253 LPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSL 299
L +L +DLS N L + L+ L+LD+N++ +L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGI--LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKA 245
++ L LT L +N + I + + T L L + NNK+T L + + LS+L L+
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDL-SPLANLSQLTWLEI 250
Query: 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFS 305
N+IS + ++ + T L +++ SN +S++ V L NL L +L L+NN L + +
Sbjct: 251 GTNQISDI-NAVKDLTKLKXLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDXEVIG 308
Query: 306 KCVQLSTLELHNTEIT 321
L+TL L IT
Sbjct: 309 GLTNLTTLFLSQNHIT 324
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 208 PGILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISFLPE-SIGNCTSLIE 265
PG+ LT L LD+ NN+LT LP + L++L L N+N++ +P + N SL
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTH 106
Query: 266 IDLSSN 271
I L +N
Sbjct: 107 IWLLNN 112
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 30/115 (26%)
Query: 220 LDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVT 279
+D S L ++PT G+ + +VL +NRI+ L P
Sbjct: 14 VDCSGKSLASVPT--GIPTTTQVLYLYDNRITKLE----------------------PGV 49
Query: 280 LENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEI------TMDALRQL 328
+ L L L LDNN L LP +F K QL+ L L++ ++ D LR L
Sbjct: 50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSL 104
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 189 AKLKHLTVLSISRNCLNSLPGIL---GHLTALQHLDVSNNKLTTLPTE--IGLLSKLEVL 243
+ LK L L + RN L + + ++++L+ LDVS N L + + + VL
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 244 KANNNRISFLPESIGNC--TSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPT 301
++N L S+ C + +DL +N + +P + +L L+ L++ +N LKS+P
Sbjct: 434 NLSSN---MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490
Query: 302 TLFSKCVQLSTLELHNT--EITMDALRQLEGW 331
+F + L + LH+ + T +R L W
Sbjct: 491 GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 522
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 208 PGILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISFLPE-SIGNCTSLIE 265
PG+ LT L LD+ NN+LT LP + L++L L N+N++ +P + N SL
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 114
Query: 266 IDLSSN 271
I L +N
Sbjct: 115 IWLLNN 120
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 220 LDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVT 279
+D S L ++PT G+ + +VL +N+I+ L P
Sbjct: 22 VDCSGKSLASVPT--GIPTTTQVLYLYDNQITKLE----------------------PGV 57
Query: 280 LENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEI 320
+ L L L LDNN L LP +F K QL+ L L++ ++
Sbjct: 58 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 98
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 187 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKAN 246
Q +L HL +I L LP L+ L ++ N L LP I L++L L
Sbjct: 99 QAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158
Query: 247 N-NRISFLPESIGNC---------TSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNAL 296
++ LPE + + +L + L + LP ++ NL LK+L + N+ L
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218
Query: 297 KSL 299
+L
Sbjct: 219 SAL 221
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 188 LAKLKHLTVLSISRNC--LNSLPGILGH---------LTALQHLDVSNNKLTTLPTEIGL 236
+A L L LSI R C L LP L L LQ L + + +LP I
Sbjct: 146 IASLNRLRELSI-RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204
Query: 237 LSKLEVLKANNNRISFLPESIGNCTSLIEIDL 268
L L+ LK N+ +S L +I + L E+DL
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 208 PGILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISFLPE-SIGNCTSLIE 265
PG+ LT L LD+ NN+LT LP + L++L L N+N++ +P + N SL
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106
Query: 266 IDLSSN 271
I L +N
Sbjct: 107 IWLLNN 112
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 220 LDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVT 279
+D S L ++PT G+ + +VL +N+I+ L P
Sbjct: 14 VDCSGKSLASVPT--GIPTTTQVLYLYDNQITKLE----------------------PGV 49
Query: 280 LENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEI 320
+ L L L LDNN L LP +F K QL+ L L++ ++
Sbjct: 50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 10/112 (8%)
Query: 211 LGHLTALQHLDVSNNKLTTLP----TEIGLLSKLEVLKANNNRISFLPESI-GNCTSLIE 265
L L L+ + +LT +P T++ LS LE L+AN I +P + + +L
Sbjct: 119 LDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLE-LRAN---IEEMPSHLFDDLENLES 174
Query: 266 IDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELH 316
I+ SN L ++P + LK L+L +N LKS+P +F + L + LH
Sbjct: 175 IEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLH 226
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 194 LTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRIS 251
LTVL + RN L+SLP GI + L L +SNN L + + + L+ L+ ++NR++
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
Query: 252 FLPESIGNCTSLIEIDLSSNLLSEL--PVTLENL 283
+ S+ SL ++S NLLS L P+ +E L
Sbjct: 179 HVDLSL--IPSLFHANVSYNLLSTLAIPIAVEEL 210
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 29/133 (21%)
Query: 212 GHLTALQHLDVSNNKLTTLPTEIGL---LSKLEVLKANNNRISFLPESIGNCT---SLIE 265
GHLT L+ L + N+L L + + L+ L + N +S+ E G+C+ SL+
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY-DEKKGDCSWTKSLLS 403
Query: 266 IDLSSNLLSE----------------------LPVTLENLHYLKALHLDNNALKSLPTTL 303
+++SSN+L++ +P + L L+ L++ +N LKS+P +
Sbjct: 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
Query: 304 FSKCVQLSTLELH 316
F + L + LH
Sbjct: 464 FDRLTSLQKIWLH 476
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 200 SRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISFLPESIG 258
S+N L +P L T + L++S N ++ L T +I LSKL +L ++NRI +L S+
Sbjct: 8 SKNGLIHVPKDLSQKTTI--LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF 65
Query: 259 NCTSLIE-IDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTL-FSKCVQLSTLELH 316
+E +DLS N L + ++ LK L L NA +LP F QL L L
Sbjct: 66 KFNQELEYLDLSHNKL--VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123
Query: 317 NTEI 320
T +
Sbjct: 124 TTHL 127
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 28/108 (25%)
Query: 134 IPDEVWDC-SPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXXXXXXXXXISWVQLAKLK 192
+ D ++ C P I+VLD+ +N I+ +P Q+ KL+
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSNKIKSIPKQV--------------------------VKLE 444
Query: 193 HLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGLLSK 239
L L+++ N L S+P GI LT+LQ + + N I LS+
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 492
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 191 LKHLTVLSISRNCLNSLP---GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L + V+ + N L S G + L ++ +++ +TT+P GL L L +
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDG 201
Query: 248 NRISFL-PESIGNCTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFS 305
N+I+ + S+ +L ++ LS N +S + +L N +L+ LHL+NN L +P L
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 306 -KCVQLSTLELHNTEIT 321
K +Q+ + LHN I+
Sbjct: 262 HKYIQV--VYLHNNNIS 276
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 191 LKHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNR 249
LK+L L + N ++ + PG L L+ L +S N+L LP + + L+ L+ + N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENE 132
Query: 250 ISFLPESIGN-CTSLIEIDLSSNLLSELPV---TLENLHYLKALHLDNNALKSLPTTLFS 305
I+ + +S+ N +I ++L +N L + + + L + + + + ++P L
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192
Query: 306 KCVQLSTLELHNTEITMDALRQLEGWDDFDK 336
L+ L L +IT L+G ++ K
Sbjct: 193 ---SLTELHLDGNKITKVDAASLKGLNNLAK 220
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLE 241
+ L L +L L +S N ++++ G L + L+ L ++NNKL +P + ++
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266
Query: 242 VLKANNNRIS 251
V+ +NN IS
Sbjct: 267 VVYLHNNNIS 276
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 209 GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL-PESIGNCTSLIEID 267
G + L ++ +++ +TT+P GL L L + N+I+ + S+ +L ++
Sbjct: 165 GAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 268 LSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFS-KCVQLSTLELHNTEIT 321
LS N +S + +L N +L+ LHL+NN L +P L K +Q+ + LHN I+
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV--VYLHNNNIS 276
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 191 LKHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNR 249
LK+L L + N ++ + PG L L+ L +S N+L LP + + L+ L+ + N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHENE 132
Query: 250 ISFLPESIGN-CTSLIEIDLSSNLLSELPV---TLENLHYLKALHLDNNALKSLPTTLFS 305
I+ + +S+ N +I ++L +N L + + + L + + + + ++P L
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192
Query: 306 KCVQLSTLELHNTEITMDALRQLEGWDDFDK 336
L+ L L +IT L+G ++ K
Sbjct: 193 ---SLTELHLDGNKITKVDAASLKGLNNLAK 220
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 183 ISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLE 241
+ L L +L L +S N ++++ G L + L+ L ++NNKL +P + ++
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266
Query: 242 VLKANNNRIS 251
V+ +NN IS
Sbjct: 267 VVYLHNNNIS 276
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 204 LNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSL 263
+ SL G + T L+ L +S+N+++ L + + L+KLE L N NR+ L C S
Sbjct: 53 IQSLAG-MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSR 110
Query: 264 IEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEIT 321
+ +D +N L + +L +L L+ L + NN LKS+ + +L L+LH EIT
Sbjct: 111 LFLD--NNELRDTD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 21/84 (25%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGI--------------------LGHLTALQHLDVSNNKL 227
L L L LS++RN L +L GI L HL L+ L + NNKL
Sbjct: 81 LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKL 140
Query: 228 TTLPTEIGLLSKLEVLKANNNRIS 251
++ +G LSKLEVL + N I+
Sbjct: 141 KSI-VMLGFLSKLEVLDLHGNEIT 163
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTL----PTEIGLLSKLEVLKANNNR 249
L L ++ L+ LP L L+ L+ L +S NK L + L+ L + K N R
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI-KGNTKR 338
Query: 250 ISFLPESIGNCTSLIEIDLSSNLLSE---LPVTLENLHYLKALHLDNNALKSLPTTLFSK 306
+ + N +L E+DLS + + + L NL +L++L+L N SL T F +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398
Query: 307 CVQLSTLELHNTEI 320
C QL L+L T +
Sbjct: 399 CPQLELLDLAFTRL 412
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 208 PGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLPESI-GNCTSLIE 265
PG L+ +D+SNN+++ L P L L L N+I+ LP+S+ SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 266 IDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324
+ L++N ++ L V ++LH L L L +N L+++ FS + T+ L D
Sbjct: 109 LLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 220 LDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLLSEL-P 277
+D LT +PT L + ++ N I +P + L IDLS+N +SEL P
Sbjct: 16 VDCRGKGLTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
Query: 278 VTLENLHYLKALHLDNNALKSLPTTLF 304
+ L L +L L N + LP +LF
Sbjct: 74 DAFQGLRSLNSLVLYGNKITELPKSLF 100
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 208 PGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLPESI-GNCTSLIE 265
PG L+ +D+SNN+++ L P L L L N+I+ LP+S+ SL
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 266 IDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324
+ L++N ++ L V ++LH L L L +N L+++ FS + T+ L D
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 220 LDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLLSEL-P 277
+D LT +PT L + ++ N I +P + L IDLS+N +SEL P
Sbjct: 16 VDCRGKGLTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
Query: 278 VTLENLHYLKALHLDNNALKSLPTTLF 304
+ L L +L L N + LP +LF
Sbjct: 74 DAFQGLRSLNSLVLYGNKITELPKSLF 100
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 207 LPGILGHLTALQHLDVSNNKLTTLPTEI--GLLSKLEVLKANNNRISFLPESIGNCTSLI 264
L + H T L+ L ++ N++ + GL L++ + N S N L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 265 EIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELH 316
+DLS N + L + L LK L LD N LKS+P +F + L + LH
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403
>pdb|1WXV|A Chain A, Solution Structure Of The Ubiquitin Domain Of Bcl-2
Binding Athanogene-1
Length = 92
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 45 QKLIFKGKVLANEET-LGVAGVTNGVKLMLIG 75
QKLIFKGK L ET L G+ +G ++MLIG
Sbjct: 52 QKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 30/131 (22%)
Query: 196 VLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPE 255
+LS S+ L ++P L TAL LD+S+N L+ L R + P
Sbjct: 22 ILSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRL------------------RAEWTPT 61
Query: 256 SIGNCTSLIEIDLSSNLL----SELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLS 311
+ N SL+ LS N L SE V + NL YL L +N L +L LFS L
Sbjct: 62 RLTNLHSLL---LSHNHLNFISSEAFVPVPNLRYLD---LSSNHLHTLDEFLFSDLQALE 115
Query: 312 TLELHNTEITM 322
L L+N I +
Sbjct: 116 VLLLYNNHIVV 126
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 78/182 (42%), Gaps = 31/182 (17%)
Query: 194 LTVLSISRNCLNSLPGIL-GHLTALQHLDVSNNKLTTLP-TEIGLLSKLEVLKANNNRIS 251
L L +S N L++L L L AL+ L + NN + + +++L+ L + N+IS
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 252 FLPESI---GN-CTSLIEIDLSSNLLSELPVTLENLHYLKA-----LHLDNNALKSLPTT 302
P + GN L+ +DLSSN L +LP+T +L L A L+L NN P
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT--DLQKLPAWVKNGLYLHNN-----PLE 202
Query: 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFDKRRRAKHQKQL----DFRVMGSTEFDE 358
K QL + RQL DF + H K+L +E+ E
Sbjct: 203 CDCKLYQL---------FSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKE 253
Query: 359 GA 360
A
Sbjct: 254 SA 255
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 60/147 (40%), Gaps = 8/147 (5%)
Query: 183 ISWVQLAKL---KHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTL--PTEIGL 236
IS+V A ++LT+L + N L + LT L+ LD+S+N + PT
Sbjct: 43 ISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRG 102
Query: 237 LSKLEVLKANNNRISFL-PESIGNCTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNN 294
L L L + + L P +L + L N L LP T +L L L L N
Sbjct: 103 LGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGN 162
Query: 295 ALKSLPTTLFSKCVQLSTLELHNTEIT 321
+ S+P F L L LH +
Sbjct: 163 RIPSVPEHAFRGLHSLDRLLLHQNHVA 189
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 29/121 (23%)
Query: 227 LTTLPTEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLLSEL--------- 276
L +PT I S+ L + NRIS++P S +C +L + L SN L+ +
Sbjct: 22 LQAVPTGIPASSQRIFL--HGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLT 79
Query: 277 -----------------PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTE 319
P T L +L LHLD L+ L LF L L L +
Sbjct: 80 LLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNN 139
Query: 320 I 320
+
Sbjct: 140 L 140
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 237 LSKLEVLKANNNRI--SFLPESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDN 293
LS LEVLK N +FLP+ +L +DLS L +L P +L L+ L++ +
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 294 NALKSLPTTLFSKCV 308
N SL T + KC+
Sbjct: 528 NNFFSLDTFPY-KCL 541
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 188 LAKLKHLTVLSISRNCLNS--LPGILGHLTALQHLDVSNNKLTTL 230
+ LK L L+++ N + S LP +LT L+HLD+S+NK+ ++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 202 NCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGNC 260
N ++ + G++ HL L+ L + NNK+T + T + L+KL+ L +N+IS +P +
Sbjct: 119 NGISDINGLV-HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGL 174
Query: 261 TSLIEIDLSSNLLSEL 276
T L + LS N +S+L
Sbjct: 175 TKLQNLYLSKNHISDL 190
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 237 LSKLEVLKANNNRISFLPESIGN-CTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNN 294
L LEVL+ N I + N SL ++L N L+ +P E L L+ L L NN
Sbjct: 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157
Query: 295 ALKSLPTTLFSKCVQLSTLEL 315
++S+P+ F++ L L+L
Sbjct: 158 PIESIPSYAFNRVPSLMRLDL 178
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 24/202 (11%)
Query: 124 IALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXXXXXXXXXXXXXXXXXXI 183
+ L ++ L IP ++ +R L +R N I+ +P I
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEV 242
S L +L L++ + +P L L L+ L++S N + P LS L+
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246
Query: 243 LKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302
L N+++S LIE + + L L L+L +N L SLP
Sbjct: 247 LWVMNSQVS-----------LIERN-----------AFDGLASLVELNLAHNNLSSLPHD 284
Query: 303 LFSKCVQLSTLELHNTEITMDA 324
LF+ L L LH+ D
Sbjct: 285 LFTPLRYLVELHLHHNPWNCDC 306
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 279 TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITM 322
T +LH+L+ L L N+++ + F+ L+TLEL + +T+
Sbjct: 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 237 LSKLEVLKANNNRI--SFLPESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDN 293
LS LEVLK N +FLP+ +L +DLS L +L P +L L+ L++ +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 294 NALKSLPTTLFSKCV 308
N SL T + KC+
Sbjct: 209 NNFFSLDTFPY-KCL 222
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 237 LSKLEVLKANNNRI--SFLPESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDN 293
LS LEVLK N +FLP+ +L +DLS L +L P +L L+ L++ +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 294 NALKSLPTTLFSKCV 308
N SL T + KC+
Sbjct: 504 NNFFSLDTFPY-KCL 517
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 188 LAKLKHLTVLSISRNCLNS--LPGILGHLTALQHLDVSNNKLTTL 230
+ LK L L+++ N + S LP +LT L+HLD+S+NK+ ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 23/88 (26%)
Query: 208 PGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEID 267
PG+ LT L +L+++ N+LT LP +G+ KL T L +
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALP--VGVFDKL--------------------TKLTHLA 94
Query: 268 LSSNLLSELPV-TLENLHYLKALHLDNN 294
L N L +P+ +NL L ++L NN
Sbjct: 95 LHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 208 PGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLP-ESIGNCTSLIEI 266
PG L L +L +S KLT +P + L L L ++N+I + E + + L +
Sbjct: 166 PGAFDGL-KLNYLRISEAKLTGIPKD--LPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222
Query: 267 DLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEIT 321
L N + + +L L L+ LHLDNN L +P L L + LH IT
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL-PDLKLLQVVYLHTNNIT 277
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 107 MVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIXXXX 166
M P G R V+ ++ LKA+P E+ SP +LD++ N I ++
Sbjct: 26 MCPFGCHCHLR-----VVQCSDLGLKAVPKEI---SPDTTLLDLQNNDIS----ELRKDD 73
Query: 167 XXXXXXXXXXXXXXXXISWVQ---LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVS 223
IS + + L+ L L IS+N L +P L ++L L +
Sbjct: 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131
Query: 224 NNKLTTLPTEI-GLLSKLEVLKANNNRI---SFLPESIGNCTSLIEIDLSSNLLSELPVT 279
+N++ +P + L + ++ N + F P + + L + +S L+ +P
Sbjct: 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF-DGLKLNYLRISEAKLTGIPKD 190
Query: 280 LENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITM 322
L L LHLD+N ++++ + +L L L + +I M
Sbjct: 191 LPET--LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 193 HLTVLSISRNCLNSLPGI-LGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRI 250
++TVL+++ N L LP + L LD N ++ L E+ +L L+VL +N +
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 251 SFLP-ESIGNCTSLIEIDLSSNLLSELPVT-LENLHYLKALHLDNNALKS 298
S + ++ CT+L E+DL SN + ++ +N L L L +N L S
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 190 KLKHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANN 247
K +LT L +S N L+ + G +L +L++L + N + L P LS L L
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL-- 303
Query: 248 NRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKC 307
+ +F +S+ S ID + + L YL+ L++D+N + S + F+
Sbjct: 304 -KRAFTKQSVS-LASHPNID---------DFSFQWLKYLEYLNMDDNNIPSTKSNTFTGL 352
Query: 308 VQLSTLELHNTEITMDAL 325
V L L L T ++ L
Sbjct: 353 VSLKYLSLSKTFTSLQTL 370
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 201 RNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGN 259
N ++ + G++ HL L+ L + NNK+T + T + L+KL+ L +N+IS +P +
Sbjct: 121 HNGISDINGLV-HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAG 176
Query: 260 CTSLIEIDLSSNLLSEL 276
T L + LS N +S+L
Sbjct: 177 LTKLQNLYLSKNHISDL 193
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 191 LKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGL-LSKLEVLKANNN 248
L +L L + N L +P G+ L+ L LD+S NK+ L + L L+ L+ +N
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 249 RISFLPE-SIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKAL---HLDNNALKSLPTTL 303
+ ++ + SL ++ L L+ +P L +LH L L HL+ NA++
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS--- 195
Query: 304 FSKCVQLSTLEL 315
F + +L LE+
Sbjct: 196 FKRLYRLKVLEI 207
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 250 ISFLPESIGNCTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCV 308
+ L + T L ++ L+ N ++++ L +LK L LD N LKS+P +F +
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLT 347
Query: 309 QLSTLELH 316
L + LH
Sbjct: 348 SLQKIWLH 355
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 201 RNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGN 259
N ++ + G++ HL L+ L + NNK+T + T + L+KL+ L +N+IS +P +
Sbjct: 121 HNGISDINGLV-HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAG 176
Query: 260 CTSLIEIDLSSNLLSEL 276
T L + LS N +S+L
Sbjct: 177 LTKLQNLYLSKNHISDL 193
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 201 RNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGN 259
N ++ + G++ HL L+ L + NNK+T + T + L+KL+ L +N+IS +P +
Sbjct: 119 HNGISDINGLV-HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAG 174
Query: 260 CTSLIEIDLSSNLLSEL 276
T L + LS N +S+L
Sbjct: 175 LTKLQNLYLSKNHISDL 191
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGNCTSLIEIDLS 269
L HL L+ L + NNK+T + T + L+KL+ L +N+IS +P + T L + LS
Sbjct: 150 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 206
Query: 270 SNLLSEL 276
N +S+L
Sbjct: 207 KNHISDL 213
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVS--NNKLTTLPTEIGLLSKLE 241
+++ L +L+HL + + L L L +LD+S N K+ +GL S L
Sbjct: 389 NFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLGLTS-LN 446
Query: 242 VLKANNNRI--SFLPESIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKS 298
LK N + L N T+L +DLS L ++ + LH L+ L++ +N L
Sbjct: 447 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 506
Query: 299 LPTTLFSKCVQLSTLE 314
L ++ +++ LSTL+
Sbjct: 507 LDSSHYNQLYSLSTLD 522
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L+ +++L +LS+ RN + + + L+ L +S N++ +L + I L L VL +N
Sbjct: 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSN 124
Query: 248 NRIS 251
N+I+
Sbjct: 125 NKIT 128
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVS--NNKLTTLPTEIGLLSKLE 241
+++ L +L+HL + + L L L +LD+S N K+ +GL S L
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLGLTS-LN 451
Query: 242 VLKANNNRI--SFLPESIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKS 298
LK N + L N T+L +DLS L ++ + LH L+ L++ +N L
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511
Query: 299 LPTTLFSKCVQLSTLE 314
L ++ +++ LSTL+
Sbjct: 512 LDSSHYNQLYSLSTLD 527
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGNCTSLIEIDLS 269
L HL L+ L + NNK+T + T + L+KL+ L +N+IS +P + T L + LS
Sbjct: 148 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 204
Query: 270 SNLLSEL 276
N +S+L
Sbjct: 205 KNHISDL 211
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGNCTSLIEIDLS 269
L HL L+ L + NNK+T + T + L+KL+ L +N+IS +P + T L + LS
Sbjct: 148 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 204
Query: 270 SNLLSEL 276
N +S+L
Sbjct: 205 KNHISDL 211
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGNCTSLIEIDLS 269
L HL L+ L + NNK+T + T + L+KL+ L +N+IS +P + T L + LS
Sbjct: 148 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 204
Query: 270 SNLLSEL 276
N +S+L
Sbjct: 205 KNHISDL 211
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247
L+ +++L +LS+ RN + + + L+ L +S N++ +L + I L L VL +N
Sbjct: 67 LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSN 125
Query: 248 NRIS 251
N+I+
Sbjct: 126 NKIT 129
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGNCTSLIEIDLS 269
L HL L+ L + NNK+T + T + L+KL+ L +N+IS +P + T L + LS
Sbjct: 125 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLS 181
Query: 270 SNLLSEL 276
N +S+L
Sbjct: 182 KNHISDL 188
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGNCTSLIEIDLS 269
L HL L+ L + NNK+T + T + L+KL+ L +N+IS +P + T L + LS
Sbjct: 125 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 181
Query: 270 SNLLSEL 276
N +S+L
Sbjct: 182 KNHISDL 188
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEV 242
S+ + L+ L + ++ ++S P L L LD+SNN + + + + L KLE+
Sbjct: 459 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 518
Query: 243 LKANNNRISFLPES---------IGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLD 292
L +N ++ L + + + L ++L SN E+PV ++L LK + L
Sbjct: 519 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 578
Query: 293 NNALKSLPTTLFSKCVQLSTLELHNTEIT 321
N L +LP ++F+ V L +L L IT
Sbjct: 579 LNNLNTLPASVFNNQVSLKSLNLQKNLIT 607
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 193 HLTVLSISRNCLNSLPGI-LGHLTALQHLDVSNNKLTTLPTEIGL-LSKLEVLKANNNRI 250
++TVL+++ N L LP + L LDV N ++ L E+ L L+VL +N +
Sbjct: 36 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 251 SFLPE-SIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQ 309
S L + + CT+L E LHL +N+++ + F K
Sbjct: 96 SQLSDKTFAFCTNLTE-----------------------LHLMSNSIQKIKNNPFVKQKN 132
Query: 310 LSTLEL-HN 317
L TL+L HN
Sbjct: 133 LITLDLSHN 141
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 211 LGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISFLPESIGNCTSLI---EI 266
G L L + N++ +P + ++E L ++N++ ++P +I N S+ +
Sbjct: 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVXGSV 649
Query: 267 DLSSNLLSE----LPVTLENLHYLKA--LHLDNNALKSLPTTLFSKCVQLSTLELHN--- 317
D S N + + + ++ + A + L N ++ PT LF+ +ST+ L N
Sbjct: 650 DFSYNKIGSEGRNISCSXDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLX 709
Query: 318 TEITMDALRQLEG 330
T I ++L+ +G
Sbjct: 710 TSIPENSLKPKDG 722
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEV 242
S+ + L+ L + ++ ++S P L L LD+SNN + + + + L KLE+
Sbjct: 454 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 513
Query: 243 LKANNNRISFLPES---------IGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLD 292
L +N ++ L + + + L ++L SN E+PV ++L LK + L
Sbjct: 514 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 573
Query: 293 NNALKSLPTTLFSKCVQLSTLELHNTEIT 321
N L +LP ++F+ V L +L L IT
Sbjct: 574 LNNLNTLPASVFNNQVSLKSLNLQKNLIT 602
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 193 HLTVLSISRNCLNSLPGI-LGHLTALQHLDVSNNKLTTLPTEIGL-LSKLEVLKANNNRI 250
++TVL+++ N L LP + L LDV N ++ L E+ L L+VL +N +
Sbjct: 31 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 251 SFLPE-SIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQ 309
S L + + CT+L E LHL +N+++ + F K
Sbjct: 91 SQLSDKTFAFCTNLTE-----------------------LHLMSNSIQKIKNNPFVKQKN 127
Query: 310 LSTLEL-HN 317
L TL+L HN
Sbjct: 128 LITLDLSHN 136
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 255 ESIGNCTSLIEIDLSSNLLSE---LPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLS 311
E +GN +L DLS N + + L+NL +L+ L+L +N L + F +C QL
Sbjct: 344 EKLGNLQTL---DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 312 TLELHNTEITMDA 324
L+L T + ++A
Sbjct: 401 LLDLAFTRLHINA 413
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 184 SWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEV 242
S+ + L+ L + ++ ++S P L L LD+SNN + + + + L KLE+
Sbjct: 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508
Query: 243 LKANNNRISFLPES---------IGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLD 292
L +N ++ L + + + L ++L SN E+PV ++L LK + L
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568
Query: 293 NNALKSLPTTLFSKCVQLSTLELHNTEIT 321
N L +LP ++F+ V L +L L IT
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLIT 597
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 27/129 (20%)
Query: 193 HLTVLSISRNCLNSLPGI-LGHLTALQHLDVSNNKLTTLPTEIGL-LSKLEVLKANNNRI 250
++TVL+++ N L LP + L LDV N ++ L E+ L L+VL +N +
Sbjct: 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 251 SFLPE-SIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQ 309
S L + + CT+L E LHL +N+++ + F K
Sbjct: 86 SQLSDKTFAFCTNLTE-----------------------LHLMSNSIQKIKNNPFVKQKN 122
Query: 310 LSTLEL-HN 317
L TL+L HN
Sbjct: 123 LITLDLSHN 131
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 214 LTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCT-SLIEIDLSSNL 272
L +D S+N++ L LL +L+ L NNNRI + E + L E+ L++N
Sbjct: 41 LDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99
Query: 273 LSEL----PV-TLENLHYL 286
L EL P+ +L++L YL
Sbjct: 100 LVELGDLDPLASLKSLTYL 118
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 259 NCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLEL 315
NCT+L ++ + + + + L + DN+A+++L +F CV+LS++ L
Sbjct: 261 NCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVXDNSAIETLEPRVFXDCVKLSSVTL 317
>pdb|3QP1|A Chain A, Crystal Structure Of Cvir Ligand-Binding Domain Bound To
The Native Ligand C6-Hsl
pdb|3QP2|A Chain A, Crystal Structure Of Cvir Ligand-Binding Domain Bound To
C8-Hsl
pdb|3QP4|A Chain A, Crystal Structure Of Cvir Ligand-Binding Domain Bound To
C10-Hsl
Length = 182
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 105 MKMVPVGKTSSERWKATGVIALAEH-----NLKAIPDEVWDCSPFIRVL 148
M+ +P G T+S++W I +A H LKA D+V +P R+L
Sbjct: 4 MRPLPAGLTASQQWTLLEWIHMAGHIETENELKAFLDQVLSQAPSERLL 52
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 202 NCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRI-SFLPESIGNC 260
N ++ + G++ HL L+ L + NNK+T + T + L+KL+ L +N+I +P +
Sbjct: 120 NGISDINGLV-HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIRRIVP--LARL 175
Query: 261 TSLIEIDLSSNLLSEL 276
T L + LS N +S+L
Sbjct: 176 TKLQNLYLSKNHISDL 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,134,483
Number of Sequences: 62578
Number of extensions: 317329
Number of successful extensions: 1271
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 328
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)