Query 017986
Match_columns 363
No_of_seqs 242 out of 3635
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194 Membrane glycoprotein 99.9 4.6E-27 1E-31 216.5 6.2 293 38-339 73-399 (873)
2 KOG4194 Membrane glycoprotein 99.9 2.6E-27 5.6E-32 218.1 2.5 248 89-339 167-446 (873)
3 PLN00113 leucine-rich repeat r 99.9 1.6E-21 3.5E-26 204.1 19.0 231 94-326 139-374 (968)
4 PLN00113 leucine-rich repeat r 99.9 1.6E-21 3.4E-26 204.2 17.8 235 94-328 163-424 (968)
5 KOG0444 Cytoskeletal regulator 99.9 1.2E-23 2.7E-28 195.6 -1.0 289 38-337 3-296 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 1.6E-22 3.6E-27 188.1 -2.6 240 93-337 101-344 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 5.2E-21 1.1E-25 169.7 -1.7 226 90-321 201-541 (565)
8 KOG4237 Extracellular matrix p 99.8 1E-20 2.2E-25 167.5 -4.0 243 93-337 65-351 (498)
9 KOG4237 Extracellular matrix p 99.8 2.7E-20 5.7E-25 164.9 -2.0 275 83-359 79-404 (498)
10 PRK15387 E3 ubiquitin-protein 99.7 1.2E-17 2.6E-22 165.6 13.0 123 193-328 343-465 (788)
11 KOG0472 Leucine-rich repeat pr 99.7 1.9E-20 4.1E-25 166.2 -7.3 204 115-322 64-289 (565)
12 KOG0617 Ras suppressor protein 99.7 8.3E-20 1.8E-24 144.6 -4.7 177 143-323 33-214 (264)
13 PRK15370 E3 ubiquitin-protein 99.7 6.7E-17 1.4E-21 161.1 14.3 183 120-321 200-401 (754)
14 PRK15370 E3 ubiquitin-protein 99.7 3.2E-17 7E-22 163.3 11.1 208 96-324 221-431 (754)
15 KOG0617 Ras suppressor protein 99.7 1.1E-19 2.4E-24 143.9 -5.6 163 117-283 31-195 (264)
16 KOG0618 Serine/threonine phosp 99.7 8.7E-19 1.9E-23 169.9 -2.6 238 94-336 240-504 (1081)
17 KOG0618 Serine/threonine phosp 99.7 4.9E-18 1.1E-22 164.8 -1.1 214 120-339 242-483 (1081)
18 PRK15387 E3 ubiquitin-protein 99.7 1E-15 2.3E-20 151.9 14.9 196 96-321 223-435 (788)
19 cd00116 LRR_RI Leucine-rich re 99.6 9.1E-16 2E-20 140.7 4.8 232 96-327 24-297 (319)
20 cd00116 LRR_RI Leucine-rich re 99.6 1.1E-15 2.3E-20 140.3 4.8 209 114-325 18-267 (319)
21 PLN03210 Resistant to P. syrin 99.6 2.1E-13 4.5E-18 144.4 19.6 121 193-318 779-903 (1153)
22 PLN03210 Resistant to P. syrin 99.5 3.2E-14 7E-19 150.5 12.8 191 119-319 589-813 (1153)
23 KOG0532 Leucine-rich repeat (L 99.5 3.5E-16 7.7E-21 144.8 -4.3 213 100-319 57-271 (722)
24 KOG0532 Leucine-rich repeat (L 99.5 1.1E-15 2.5E-20 141.5 -1.8 204 114-323 45-249 (722)
25 COG4886 Leucine-rich repeat (L 99.4 3.6E-13 7.8E-18 127.3 8.5 207 123-335 97-304 (394)
26 KOG3207 Beta-tubulin folding c 99.4 3.3E-14 7.1E-19 128.1 0.9 157 94-251 120-284 (505)
27 KOG3207 Beta-tubulin folding c 99.4 9.2E-14 2E-18 125.3 1.4 223 116-339 118-361 (505)
28 PF14580 LRR_9: Leucine-rich r 99.4 1.8E-12 4E-17 106.6 8.0 139 213-359 17-158 (175)
29 PF14580 LRR_9: Leucine-rich r 99.3 1.7E-12 3.6E-17 106.8 4.9 106 164-274 17-126 (175)
30 COG4886 Leucine-rich repeat (L 99.3 2.4E-12 5.2E-17 121.7 6.5 184 115-302 112-295 (394)
31 KOG1259 Nischarin, modulator o 99.3 2.9E-13 6.3E-18 116.8 -0.0 177 143-321 214-412 (490)
32 KOG1909 Ran GTPase-activating 99.3 9.1E-13 2E-17 115.9 2.6 228 93-320 28-310 (382)
33 KOG1909 Ran GTPase-activating 99.3 1.7E-13 3.7E-18 120.3 -3.4 223 115-337 26-303 (382)
34 KOG1259 Nischarin, modulator o 99.2 4.9E-12 1.1E-16 109.3 2.9 196 140-341 179-408 (490)
35 cd01813 UBP_N UBP ubiquitin pr 99.1 3.5E-10 7.6E-15 79.4 6.5 71 6-76 1-74 (74)
36 KOG0531 Protein phosphatase 1, 98.9 6.2E-11 1.3E-15 112.5 -2.4 108 115-228 91-199 (414)
37 KOG0531 Protein phosphatase 1, 98.9 1.2E-10 2.6E-15 110.7 -0.7 199 116-323 69-270 (414)
38 PF13855 LRR_8: Leucine rich r 98.9 7.7E-10 1.7E-14 75.0 2.2 60 261-320 1-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.8 2.3E-09 5E-14 72.6 3.3 60 119-178 1-61 (61)
40 KOG4579 Leucine-rich repeat (L 98.8 1.7E-10 3.8E-15 88.6 -3.1 139 193-332 28-170 (177)
41 KOG1859 Leucine-rich repeat pr 98.8 1E-10 2.2E-15 111.9 -6.0 128 193-323 165-294 (1096)
42 KOG2982 Uncharacterized conser 98.8 2.2E-09 4.8E-14 92.9 1.3 200 97-297 47-262 (418)
43 cd01812 BAG1_N Ubiquitin-like 98.7 5E-08 1.1E-12 68.2 6.7 70 6-75 1-70 (71)
44 KOG4658 Apoptotic ATPase [Sign 98.7 1.6E-08 3.5E-13 103.2 5.1 212 119-335 545-797 (889)
45 PLN03150 hypothetical protein; 98.7 9.5E-08 2.1E-12 95.2 9.5 106 217-323 420-530 (623)
46 KOG2982 Uncharacterized conser 98.6 9.7E-09 2.1E-13 89.0 -0.7 201 119-322 45-263 (418)
47 KOG1859 Leucine-rich repeat pr 98.5 6.1E-09 1.3E-13 100.0 -3.2 193 139-339 80-286 (1096)
48 PLN03150 hypothetical protein; 98.5 2.2E-07 4.7E-12 92.6 7.5 92 239-330 419-512 (623)
49 KOG4579 Leucine-rich repeat (L 98.5 2.6E-08 5.6E-13 76.8 -0.2 131 216-347 28-163 (177)
50 cd01807 GDX_N ubiquitin-like d 98.5 5E-07 1.1E-11 63.6 6.4 70 6-75 1-71 (74)
51 COG5238 RNA1 Ran GTPase-activa 98.4 4.5E-07 9.8E-12 77.9 6.7 247 114-360 25-341 (388)
52 cd01791 Ubl5 UBL5 ubiquitin-li 98.4 9.2E-07 2E-11 61.7 6.8 69 5-73 1-70 (73)
53 KOG4658 Apoptotic ATPase [Sign 98.4 4.4E-07 9.6E-12 92.8 7.0 178 143-324 523-733 (889)
54 KOG2120 SCF ubiquitin ligase, 98.3 1.4E-08 3E-13 88.1 -4.8 171 144-318 186-373 (419)
55 cd01809 Scythe_N Ubiquitin-lik 98.3 2.2E-06 4.9E-11 59.9 6.5 69 6-74 1-70 (72)
56 KOG2120 SCF ubiquitin ligase, 98.3 1.3E-08 2.7E-13 88.4 -6.1 37 140-176 207-244 (419)
57 KOG1644 U2-associated snRNP A' 98.3 9.9E-07 2.1E-11 72.6 5.0 123 168-294 21-150 (233)
58 cd01805 RAD23_N Ubiquitin-like 98.3 4.6E-06 9.9E-11 59.2 7.2 70 6-75 1-73 (77)
59 cd01794 DC_UbP_C dendritic cel 98.3 2.7E-06 5.9E-11 58.9 5.8 67 8-74 1-68 (70)
60 COG5238 RNA1 Ran GTPase-activa 98.2 3.7E-07 8.1E-12 78.4 1.6 185 142-326 29-260 (388)
61 PTZ00044 ubiquitin; Provisiona 98.2 3.5E-06 7.6E-11 59.7 6.4 69 6-74 1-70 (76)
62 cd01806 Nedd8 Nebb8-like ubiq 98.2 5E-06 1.1E-10 58.9 7.1 70 6-75 1-71 (76)
63 KOG1872 Ubiquitin-specific pro 98.2 1.9E-06 4.2E-11 79.1 6.1 75 5-79 3-78 (473)
64 cd01793 Fubi Fubi ubiquitin-li 98.2 4.3E-06 9.3E-11 58.8 6.6 68 6-74 1-68 (74)
65 cd01804 midnolin_N Ubiquitin-l 98.2 5.9E-06 1.3E-10 58.7 6.7 71 5-76 1-72 (78)
66 PF12799 LRR_4: Leucine Rich r 98.2 1.6E-06 3.5E-11 54.0 3.3 36 263-298 3-38 (44)
67 KOG0005 Ubiquitin-like protein 98.2 2.5E-06 5.5E-11 54.5 4.0 66 7-72 2-68 (70)
68 KOG1644 U2-associated snRNP A' 98.2 2.3E-06 5E-11 70.5 4.8 101 121-224 44-149 (233)
69 cd01803 Ubiquitin Ubiquitin. U 98.1 7.9E-06 1.7E-10 57.8 6.5 70 6-75 1-71 (76)
70 cd01802 AN1_N ubiquitin-like d 98.1 1.2E-05 2.6E-10 60.2 7.5 71 4-74 26-97 (103)
71 cd01797 NIRF_N amino-terminal 98.1 9.5E-06 2.1E-10 57.5 6.4 71 6-76 1-74 (78)
72 KOG3665 ZYG-1-like serine/thre 98.1 2.4E-06 5.3E-11 85.3 3.8 106 166-272 122-231 (699)
73 cd01810 ISG15_repeat2 ISG15 ub 98.1 1.1E-05 2.4E-10 56.7 6.0 67 8-74 1-68 (74)
74 cd01798 parkin_N amino-termina 98.1 1.2E-05 2.6E-10 55.9 5.9 67 8-74 1-68 (70)
75 cd01792 ISG15_repeat1 ISG15 ub 98.0 1.3E-05 2.8E-10 57.3 5.8 69 6-74 3-74 (80)
76 PRK15386 type III secretion pr 98.0 2.2E-05 4.8E-10 72.8 8.6 133 115-272 48-188 (426)
77 PF12799 LRR_4: Leucine Rich r 98.0 7.5E-06 1.6E-10 51.0 3.7 36 194-229 3-38 (44)
78 cd01796 DDI1_N DNA damage indu 98.0 1.8E-05 4E-10 55.1 5.8 66 8-73 1-69 (71)
79 cd01800 SF3a120_C Ubiquitin-li 98.0 1.7E-05 3.8E-10 56.0 5.7 64 12-75 5-68 (76)
80 smart00213 UBQ Ubiquitin homol 98.0 1.8E-05 3.8E-10 53.8 5.6 63 6-68 1-63 (64)
81 PRK15386 type III secretion pr 97.9 4.4E-05 9.5E-10 70.9 8.5 134 142-295 51-188 (426)
82 cd01790 Herp_N Homocysteine-re 97.9 4.9E-05 1.1E-09 53.5 6.6 70 5-74 1-77 (79)
83 PF00240 ubiquitin: Ubiquitin 97.8 8.6E-05 1.9E-09 51.3 6.9 64 12-75 3-66 (69)
84 PF13306 LRR_5: Leucine rich r 97.7 8.9E-05 1.9E-09 58.1 6.6 120 186-311 6-129 (129)
85 cd01808 hPLIC_N Ubiquitin-like 97.7 0.00012 2.5E-09 51.0 6.0 68 6-74 1-69 (71)
86 PF13306 LRR_5: Leucine rich r 97.7 0.00013 2.9E-09 57.1 6.4 106 134-246 3-111 (129)
87 KOG0010 Ubiquitin-like protein 97.6 9.5E-05 2.1E-09 68.7 6.0 76 3-78 13-88 (493)
88 KOG2123 Uncharacterized conser 97.6 1.6E-06 3.5E-11 74.8 -5.3 101 237-339 18-124 (388)
89 TIGR00601 rad23 UV excision re 97.6 0.00017 3.6E-09 66.8 6.9 72 6-77 1-76 (378)
90 KOG3665 ZYG-1-like serine/thre 97.6 8E-05 1.7E-09 74.6 4.9 130 143-274 122-263 (699)
91 cd01799 Hoil1_N Ubiquitin-like 97.4 0.00058 1.3E-08 47.9 6.0 59 12-71 10-70 (75)
92 cd01769 UBL Ubiquitin-like dom 97.3 0.00076 1.7E-08 46.3 5.7 66 10-75 2-68 (69)
93 cd01763 Sumo Small ubiquitin-r 97.2 0.0023 4.9E-08 46.4 7.9 71 4-74 10-81 (87)
94 KOG2123 Uncharacterized conser 97.2 1.6E-05 3.5E-10 68.8 -4.1 80 165-249 18-99 (388)
95 KOG2739 Leucine-rich acidic nu 97.1 0.00027 5.8E-09 60.9 2.4 38 214-251 64-104 (260)
96 KOG4341 F-box protein containi 97.1 3.2E-05 6.9E-10 70.5 -3.5 123 214-336 293-430 (483)
97 KOG0003 Ubiquitin/60s ribosoma 97.1 0.00027 5.8E-09 51.2 1.7 66 6-71 2-67 (128)
98 KOG2739 Leucine-rich acidic nu 97.0 0.00037 8E-09 60.0 1.7 55 191-245 90-150 (260)
99 cd01789 Alp11_N Ubiquitin-like 96.9 0.0092 2E-07 42.9 8.1 71 6-76 2-81 (84)
100 KOG4341 F-box protein containi 96.7 7.9E-05 1.7E-09 68.0 -4.4 242 92-336 161-456 (483)
101 KOG0011 Nucleotide excision re 96.6 0.0051 1.1E-07 54.5 6.2 73 6-78 1-76 (340)
102 PF14560 Ubiquitin_2: Ubiquiti 96.6 0.011 2.4E-07 42.8 7.1 72 6-77 2-84 (87)
103 KOG0004 Ubiquitin/40S ribosoma 96.6 0.0021 4.6E-08 50.5 3.4 68 6-73 1-69 (156)
104 PF11976 Rad60-SLD: Ubiquitin- 96.5 0.011 2.5E-07 41.0 6.4 68 6-73 1-70 (72)
105 KOG4308 LRR-containing protein 96.3 1.5E-05 3.3E-10 76.3 -12.1 36 121-156 89-128 (478)
106 KOG1947 Leucine rich repeat pr 96.1 0.00079 1.7E-08 65.1 -1.7 60 190-249 241-306 (482)
107 KOG1947 Leucine rich repeat pr 96.1 0.0015 3.3E-08 63.1 0.2 128 117-245 186-328 (482)
108 PF00560 LRR_1: Leucine Rich R 95.9 0.0043 9.2E-08 32.1 1.3 20 144-163 1-20 (22)
109 KOG4308 LRR-containing protein 95.9 0.00011 2.3E-09 70.6 -8.8 180 145-324 89-306 (478)
110 cd01815 BMSC_UbP_N Ubiquitin-l 95.8 0.013 2.8E-07 40.7 3.7 52 23-74 19-73 (75)
111 cd01795 USP48_C USP ubiquitin- 95.2 0.057 1.2E-06 39.2 5.1 60 16-75 16-76 (107)
112 smart00370 LRR Leucine-rich re 94.9 0.03 6.5E-07 30.2 2.5 22 284-305 2-23 (26)
113 smart00369 LRR_TYP Leucine-ric 94.9 0.03 6.5E-07 30.2 2.5 22 284-305 2-23 (26)
114 PF00560 LRR_1: Leucine Rich R 94.9 0.0065 1.4E-07 31.4 -0.2 15 286-300 2-16 (22)
115 PF13516 LRR_6: Leucine Rich r 94.6 0.017 3.8E-07 30.5 1.0 22 307-328 1-22 (24)
116 PF13504 LRR_7: Leucine rich r 94.1 0.03 6.5E-07 26.9 1.2 15 144-158 2-16 (17)
117 PLN02560 enoyl-CoA reductase 93.8 0.19 4.1E-06 45.5 6.7 70 6-75 1-82 (308)
118 cd01788 ElonginB Ubiquitin-lik 93.2 0.21 4.6E-06 37.3 4.8 59 7-65 4-62 (119)
119 smart00369 LRR_TYP Leucine-ric 92.9 0.08 1.7E-06 28.4 1.7 22 119-140 2-23 (26)
120 smart00370 LRR Leucine-rich re 92.9 0.08 1.7E-06 28.4 1.7 22 119-140 2-23 (26)
121 cd01814 NTGP5 Ubiquitin-like N 92.7 0.19 4.2E-06 37.6 4.1 60 5-64 4-72 (113)
122 cd01811 OASL_repeat1 2'-5' oli 92.0 0.81 1.7E-05 31.4 5.9 69 6-75 1-75 (80)
123 KOG0473 Leucine-rich repeat pr 91.8 0.0032 7E-08 53.5 -6.9 86 212-297 39-124 (326)
124 KOG3864 Uncharacterized conser 91.5 0.1 2.2E-06 43.6 1.6 31 308-338 151-182 (221)
125 KOG0473 Leucine-rich repeat pr 91.1 0.0032 6.9E-08 53.5 -7.7 88 187-274 37-124 (326)
126 KOG4248 Ubiquitin-like protein 89.5 0.65 1.4E-05 47.8 5.4 72 5-77 2-74 (1143)
127 smart00368 LRR_RI Leucine rich 89.4 0.26 5.6E-06 27.1 1.5 21 308-328 2-22 (28)
128 cd00196 UBQ Ubiquitin-like pro 86.1 3 6.6E-05 26.6 5.8 61 13-73 6-66 (69)
129 KOG0001 Ubiquitin and ubiquiti 85.7 8.2 0.00018 25.8 8.0 63 12-74 7-69 (75)
130 TIGR00864 PCC polycystin catio 83.9 0.78 1.7E-05 52.4 2.8 35 290-324 1-35 (2740)
131 cd01801 Tsc13_N Ubiquitin-like 83.7 2.2 4.8E-05 29.8 4.2 55 17-72 16-73 (77)
132 KOG3864 Uncharacterized conser 83.6 0.24 5.2E-06 41.5 -0.9 36 283-318 150-186 (221)
133 smart00367 LRR_CC Leucine-rich 83.1 0.73 1.6E-05 24.6 1.2 22 307-328 1-23 (26)
134 KOG0006 E3 ubiquitin-protein l 80.2 2.2 4.7E-05 37.9 3.7 58 13-70 12-69 (446)
135 PF11543 UN_NPL4: Nuclear pore 78.3 7.9 0.00017 27.4 5.4 47 4-50 3-49 (80)
136 PF08817 YukD: WXG100 protein 75.6 10 0.00022 26.6 5.5 69 5-73 2-78 (79)
137 smart00365 LRR_SD22 Leucine-ri 75.6 2.5 5.5E-05 22.7 1.8 16 284-299 2-17 (26)
138 smart00364 LRR_BAC Leucine-ric 74.3 2.4 5.2E-05 22.8 1.4 17 193-209 3-19 (26)
139 KOG3763 mRNA export factor TAP 73.1 2.1 4.6E-05 41.3 1.8 63 117-180 216-284 (585)
140 PF13881 Rad60-SLD_2: Ubiquiti 72.5 39 0.00085 25.5 8.3 64 6-69 3-75 (111)
141 PF11470 TUG-UBL1: GLUT4 regul 66.0 26 0.00057 23.6 5.4 64 10-73 2-65 (65)
142 KOG3763 mRNA export factor TAP 62.1 4.6 9.9E-05 39.2 1.6 14 238-251 218-231 (585)
143 smart00666 PB1 PB1 domain. Pho 61.1 35 0.00075 23.7 5.8 46 5-50 1-46 (81)
144 cd06397 PB1_UP1 Uncharacterize 53.4 24 0.00052 24.8 3.6 39 6-44 1-39 (82)
145 cd06396 PB1_NBR1 The PB1 domai 51.2 51 0.0011 23.3 5.0 36 6-41 1-38 (81)
146 PF00564 PB1: PB1 domain; Int 50.9 67 0.0015 22.3 5.9 45 5-49 1-46 (84)
147 cd06406 PB1_P67 A PB1 domain i 47.4 66 0.0014 22.7 5.1 47 6-53 3-49 (80)
148 KOG3493 Ubiquitin-like protein 47.3 9.6 0.00021 25.4 0.8 68 6-73 2-70 (73)
149 cd06408 PB1_NoxR The PB1 domai 45.8 57 0.0012 23.4 4.7 37 5-41 2-38 (86)
150 PF10302 DUF2407: DUF2407 ubiq 45.4 28 0.00062 25.6 3.2 56 8-63 3-64 (97)
151 PF00789 UBX: UBX domain; Int 45.2 1E+02 0.0022 21.4 6.2 68 4-71 5-78 (82)
152 KOG1769 Ubiquitin-like protein 43.3 1.3E+02 0.0029 22.1 7.0 74 4-77 19-93 (99)
153 TIGR00864 PCC polycystin catio 42.2 18 0.0004 42.2 2.5 32 125-156 1-32 (2740)
154 cd01772 SAKS1_UBX SAKS1-like U 41.5 1.2E+02 0.0026 21.1 7.0 67 5-71 4-75 (79)
155 KOG4242 Predicted myosin-I-bin 41.3 23 0.0005 33.9 2.7 181 143-326 165-372 (553)
156 smart00166 UBX Domain present 37.4 1.4E+02 0.003 20.7 7.1 36 4-39 3-39 (80)
157 cd06407 PB1_NLP A PB1 domain i 33.4 92 0.002 22.1 4.2 36 6-41 1-36 (82)
158 cd05992 PB1 The PB1 domain is 31.9 1.1E+02 0.0024 21.0 4.5 37 6-42 1-38 (81)
159 cd01767 UBX UBX (ubiquitin reg 31.2 1.8E+02 0.0038 20.0 6.9 62 5-66 2-68 (77)
160 KOG4495 RNA polymerase II tran 30.8 88 0.0019 22.8 3.6 43 7-49 4-46 (110)
161 cd06404 PB1_aPKC PB1 domain is 25.3 1.6E+02 0.0034 21.0 4.1 37 6-42 1-37 (83)
162 PF13019 Telomere_Sde2: Telome 24.9 1.8E+02 0.0038 23.7 4.9 49 6-54 1-56 (162)
163 KOG3206 Alpha-tubulin folding 22.8 2.9E+02 0.0063 23.5 5.8 63 17-79 15-84 (234)
164 COG5417 Uncharacterized small 20.9 3E+02 0.0065 19.1 7.2 69 5-73 4-80 (81)
No 1
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.6e-27 Score=216.50 Aligned_cols=293 Identities=21% Similarity=0.250 Sum_probs=177.9
Q ss_pred cCC-CCCCeEEEecceeecCCcccccccccCCcEEEEeeccCcccCCCccccccCC-CcccccccccccccccCCCCChH
Q 017986 38 TNV-LPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQS-PITSRKTDRVRDMKMVPVGKTSS 115 (363)
Q Consensus 38 ~~~-~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~ 115 (363)
.|+ |+-.|.+.+.++.+.+.......++.+.+++.+-...-. ..|... ....+++|.++.+.|..+....+
T Consensus 73 ~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-------~IP~f~~~sghl~~L~L~~N~I~sv~se~L 145 (873)
T KOG4194|consen 73 KGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-------RIPRFGHESGHLEKLDLRHNLISSVTSEEL 145 (873)
T ss_pred CCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-------hcccccccccceeEEeeeccccccccHHHH
Confidence 444 445567889999998887776666666666444222111 111222 22237777888888888877778
Q ss_pred HhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccc-cccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCc
Q 017986 116 ERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV-PDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHL 194 (363)
Q Consensus 116 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 194 (363)
..++.|+.|+|+.|.|.+||...|....++++|+|++|+|+.+ ...|..+.+|..|.|+.|.++. ++...|.+++.|
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt--Lp~r~Fk~L~~L 223 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT--LPQRSFKRLPKL 223 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc--cCHHHhhhcchh
Confidence 8888888888888877777777777666777777777777766 3456667777777777777774 454566667777
Q ss_pred CEEEcCCCcCCCC------------------------C-ccccCCCCCCEEEcccCcCCCcc-hhhcCCCCCCEEeccCC
Q 017986 195 TVLSISRNCLNSL------------------------P-GILGHLTALQHLDVSNNKLTTLP-TEIGLLSKLEVLKANNN 248 (363)
Q Consensus 195 ~~L~l~~n~l~~l------------------------~-~~l~~l~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n 248 (363)
+.|+|.+|+|..+ . +.|-.+.++++|+++.|++..+. .++.+++.|+.|++++|
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 7777766665533 1 22333445555555555555442 23355555556666666
Q ss_pred cCccCC-ccccCCCCCcEEECCCCCCCCCC-hhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchh---
Q 017986 249 RISFLP-ESIGNCTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMD--- 323 (363)
Q Consensus 249 ~i~~~~-~~~~~~~~L~~L~L~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--- 323 (363)
.|..+. +.+..+++|+.|+|++|+|+.++ +.+..+..|++|.|++|.++.+...+|..+++|+.|||++|.++..
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 555443 34555556666666666666553 3455555566666666666666555666666666666666665432
Q ss_pred hhhcccCchHHHHHHH
Q 017986 324 ALRQLEGWDDFDKRRR 339 (363)
Q Consensus 324 ~~~~l~~l~~l~~~~~ 339 (363)
.-..+.++++|.+++.
T Consensus 384 aa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRL 399 (873)
T ss_pred chhhhccchhhhheee
Confidence 3344555555555443
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=2.6e-27 Score=218.15 Aligned_cols=248 Identities=25% Similarity=0.332 Sum_probs=169.9
Q ss_pred ccCCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccc-cc-------
Q 017986 89 EAQSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV-PD------- 160 (363)
Q Consensus 89 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~~------- 160 (363)
+.+.....+++|.+.+++|..++...|..+..|..|.|+.|+|+.+|...|..+++|+.|+|..|+|..+ .-
T Consensus 167 ~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S 246 (873)
T KOG4194|consen 167 PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS 246 (873)
T ss_pred CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh
Confidence 3333444566666666666666666666666666666677777666666666666666666666665533 12
Q ss_pred -----------------cccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCC-CccccCCCCCCEEEc
Q 017986 161 -----------------QIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSL-PGILGHLTALQHLDV 222 (363)
Q Consensus 161 -----------------~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l 222 (363)
.|..+.++++|+|+.|+++. ...+-+.++..|+.|++++|.|..+ +++|+..++|++|++
T Consensus 247 l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~--vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 247 LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA--VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhcCcccccCcceeeecccceeecccchhhh--hhcccccccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 24455555555555555553 2223345566666666666666655 355666677777777
Q ss_pred ccCcCCCcc-hhhcCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCCCCCC----CCChhccCCCCCCEEECCCCCC
Q 017986 223 SNNKLTTLP-TEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLLS----ELPVTLENLHYLKALHLDNNAL 296 (363)
Q Consensus 223 ~~n~i~~l~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~n~l~----~l~~~~~~~~~L~~L~L~~n~l 296 (363)
++|.++.++ ..+..+..|+.|.|++|.+..+.+ .|..+.+|+.|||.+|.++ +-..++..+++|+.|++.+|+|
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 777777663 445666677777777777776654 3667778888888888776 2234567788999999999999
Q ss_pred CCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHHHHH
Q 017986 297 KSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDKRRR 339 (363)
Q Consensus 297 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~~~~ 339 (363)
..|+..+|.+++.|+.|||.+|.|-...+.+|+.+ .|+++..
T Consensus 405 k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 99999889999999999999999888888888888 7877654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=1.6e-21 Score=204.11 Aligned_cols=231 Identities=25% Similarity=0.312 Sum_probs=141.0
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCc-cccccccCCCCCCEEE
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQ-CVPDQIDGLTGLKKLL 172 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~ 172 (363)
.+.++.+.+.++.+....+..+..++.|++|++++|.+....+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 445666666666665555556666777777777777665333334455666777777777665 3466666667777777
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCC-CCCccccCCCCCCEEEcccCcCC-CcchhhcCCCCCCEEeccCCcC
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRNCLN-SLPGILGHLTALQHLDVSNNKLT-TLPTEIGLLSKLEVLKANNNRI 250 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~i~-~l~~~~~~~~~L~~L~l~~n~i 250 (363)
+++|.+... ++ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+
T Consensus 219 L~~n~l~~~-~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 219 LGYNNLSGE-IP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred CcCCccCCc-CC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 777666542 22 34566667777777666655 45556666666666666666665 3455566666666666666666
Q ss_pred c-cCCccccCCCCCcEEECCCCCCC-CCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhh
Q 017986 251 S-FLPESIGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALR 326 (363)
Q Consensus 251 ~-~~~~~~~~~~~L~~L~L~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 326 (363)
. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++...+..++.+++|+.|++++|.+++..+.
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 5 44455566666666666666655 3455555666666666666666543334455566666666666665544433
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.6e-21 Score=204.22 Aligned_cols=235 Identities=24% Similarity=0.303 Sum_probs=98.6
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCc-cccccccCCCCCCEEE
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQ-CVPDQIDGLTGLKKLL 172 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~ 172 (363)
...++.+.+.++.+....+..+..++.|++|++++|.+....+..+..+++|++|++++|++. .+|..+..+++|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 334444455444444433444444445555555544443222222333444444444444443 2343444444444444
Q ss_pred cCCCCCCCCCC----------------------ChHhhcCCCCcCEEEcCCCcCC-CCCccccCCCCCCEEEcccCcCC-
Q 017986 173 LDANDLSNDSI----------------------SWVQLAKLKHLTVLSISRNCLN-SLPGILGHLTALQHLDVSNNKLT- 228 (363)
Q Consensus 173 L~~n~~~~~~~----------------------~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~i~- 228 (363)
+++|.+..... ....+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 44444432110 0122334444444444444433 23333444444444444444443
Q ss_pred CcchhhcCCCCCCEEeccCCcCc-cCCccccCCCCCcEEECCCCCCC-CCChhccCCCCCCEEECCCCCCCCCChhhhhC
Q 017986 229 TLPTEIGLLSKLEVLKANNNRIS-FLPESIGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALKSLPTTLFSK 306 (363)
Q Consensus 229 ~l~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~L~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 306 (363)
.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+....+..+..
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 22333444444444444444444 33333444444444444444443 22333333333333333333333222233344
Q ss_pred CCCCCEEEccCCccchhhhhcc
Q 017986 307 CVQLSTLELHNTEITMDALRQL 328 (363)
Q Consensus 307 l~~L~~L~L~~n~i~~~~~~~l 328 (363)
+++|+.|++++|++++..+..+
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~ 424 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEF 424 (968)
T ss_pred CCCCCEEECcCCEeeeECChhH
Confidence 4444444444444444433333
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.2e-23 Score=195.55 Aligned_cols=289 Identities=23% Similarity=0.312 Sum_probs=187.9
Q ss_pred cCCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccCcccCCCccccccCCCcccccccccccccccCCCCChHHh
Q 017986 38 TNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRKTDRVRDMKMVPVGKTSSER 117 (363)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 117 (363)
+|+.|-.+-+.|+|+.|+....-+.+ .....+.++.....+ -..+ ........++++|.+..+.+..+.. .+..
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v--~qMt~~~WLkLnrt~--L~~v-PeEL~~lqkLEHLs~~HN~L~~vhG-ELs~ 76 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDV--EQMTQMTWLKLNRTK--LEQV-PEELSRLQKLEHLSMAHNQLISVHG-ELSD 76 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhH--HHhhheeEEEechhh--hhhC-hHHHHHHhhhhhhhhhhhhhHhhhh-hhcc
Confidence 56777777888888888766554443 333445555554432 1111 1122345567888888777665442 4667
Q ss_pred hcccceeecccccCc--cCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcC
Q 017986 118 WKATGVIALAEHNLK--AIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLT 195 (363)
Q Consensus 118 ~~~l~~L~l~~n~i~--~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 195 (363)
++.|+.+.+..|++. .||.++|.. ..|+.|||++|++..+|..+..-.++-.|+|++|+|. .++...|.++..|-
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l-~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRL-KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLL 153 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhccc-ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHh
Confidence 788888888888876 788888865 6799999999999988888888888889999999988 47777888888888
Q ss_pred EEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCc--cCCccccCCCCCcEEECCCCC
Q 017986 196 VLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRIS--FLPESIGNCTSLIEIDLSSNL 272 (363)
Q Consensus 196 ~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L~L~~n~ 272 (363)
.|||++|++..+|+...++..|++|.+++|.+..+ -..+.++++|+.|.+++.+-+ .+|..+..+.+|..+|++.|.
T Consensus 154 fLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 99999999998888888888888888888865532 123344555555555554422 555555555555555555555
Q ss_pred CCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHHH
Q 017986 273 LSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDKR 337 (363)
Q Consensus 273 l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~~ 337 (363)
+..+|.++-.+++|+.|+|++|+|+.+... .....+|.+|+++.|+++.. +..+-.+++|..+
T Consensus 234 Lp~vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kL 296 (1255)
T KOG0444|consen 234 LPIVPECLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKL 296 (1255)
T ss_pred CCcchHHHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccc-hHHHhhhHHHHHH
Confidence 555555555555555555555555544332 13334555555555555432 3333444444443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1.6e-22 Score=188.14 Aligned_cols=240 Identities=26% Similarity=0.342 Sum_probs=187.7
Q ss_pred CcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEE
Q 017986 93 PITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLL 172 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~ 172 (363)
....+..+.++.+++..++ ..++..+.+-+|+|++|+|..||..+|-.+..|-.|||++|++..+|+.+..+..|++|.
T Consensus 101 ~l~dLt~lDLShNqL~EvP-~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVP-TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccccceeeecchhhhhhcc-hhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence 3445677777777765544 457777888899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCC--CCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcC
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRNCLN--SLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRI 250 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i 250 (363)
|++|.+....+ ..+-.+.+|++|.+++++-+ .+|.++..+.+|..++++.|.+..+|+++..+++|+.|+|++|.|
T Consensus 180 Ls~NPL~hfQL--rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 180 LSNNPLNHFQL--RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred cCCChhhHHHH--hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 99998764111 12334456777788877544 678888888889999999998888888888888999999999988
Q ss_pred ccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCC--CCChhhhhCCCCCCEEEccCCccchhhhhcc
Q 017986 251 SFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALK--SLPTTLFSKCVQLSTLELHNTEITMDALRQL 328 (363)
Q Consensus 251 ~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l 328 (363)
+.+......+.+|++|+|+.|+++.+|.++..++.|+.|++.+|+++ .||.+ .+.+.+|.++...+|.+. -.+..+
T Consensus 258 teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aanN~LE-lVPEgl 335 (1255)
T KOG0444|consen 258 TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAANNKLE-LVPEGL 335 (1255)
T ss_pred eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhccccc-cCchhh
Confidence 87766677778888888888888888888888888888888888766 66655 467777777777777653 234455
Q ss_pred cCchHHHHH
Q 017986 329 EGWDDFDKR 337 (363)
Q Consensus 329 ~~l~~l~~~ 337 (363)
.+|+.|+.+
T Consensus 336 cRC~kL~kL 344 (1255)
T KOG0444|consen 336 CRCVKLQKL 344 (1255)
T ss_pred hhhHHHHHh
Confidence 566666654
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=5.2e-21 Score=169.75 Aligned_cols=226 Identities=30% Similarity=0.397 Sum_probs=127.6
Q ss_pred cCCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCC
Q 017986 90 AQSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLK 169 (363)
Q Consensus 90 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~ 169 (363)
......++..+.++.+++..++ .|..+..|+++.++.|+|..+|......++.+.+||++.|++..+|+.++.+.+|.
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLE 278 (565)
T ss_pred hhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhh
Confidence 3344555666666666665555 55566666666666666666666666556666666666666666666666666666
Q ss_pred EEEcCCCCCCCCCCChHhhcCC----------------------------------------------------------
Q 017986 170 KLLLDANDLSNDSISWVQLAKL---------------------------------------------------------- 191 (363)
Q Consensus 170 ~L~L~~n~~~~~~~~~~~~~~l---------------------------------------------------------- 191 (363)
+|++++|.++.... .+.++
T Consensus 279 rLDlSNN~is~Lp~---sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 279 RLDLSNNDISSLPY---SLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhcccCCccccCCc---ccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 66666665553110 01111
Q ss_pred ------CC--------------------------cCEEEcCCCcCCCCCccccCCCCC-CEEEcccCcCCCcchhhcCCC
Q 017986 192 ------KH--------------------------LTVLSISRNCLNSLPGILGHLTAL-QHLDVSNNKLTTLPTEIGLLS 238 (363)
Q Consensus 192 ------~~--------------------------L~~L~l~~n~l~~l~~~l~~l~~L-~~L~l~~n~i~~l~~~~~~~~ 238 (363)
.+ ...++++.|++.++|.-+..++.+ +.+.++.|.++.+|..+..++
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~ 435 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQ 435 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhh
Confidence 11 223344444443333211111100 111111112222222334445
Q ss_pred CCCEEeccCCcCccCCccccCCCCCcEEECCCC-----------------------CCCCCCh-hccCCCCCCEEECCCC
Q 017986 239 KLEVLKANNNRISFLPESIGNCTSLIEIDLSSN-----------------------LLSELPV-TLENLHYLKALHLDNN 294 (363)
Q Consensus 239 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n-----------------------~l~~l~~-~~~~~~~L~~L~L~~n 294 (363)
+|..|++++|-+.++|..++.+-.|+.|+++.| +++.++. .+..+.+|.+|||.+|
T Consensus 436 kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN 515 (565)
T KOG0472|consen 436 KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN 515 (565)
T ss_pred cceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC
Confidence 555555555555555555555555555555555 4444432 3667889999999999
Q ss_pred CCCCCChhhhhCCCCCCEEEccCCccc
Q 017986 295 ALKSLPTTLFSKCVQLSTLELHNTEIT 321 (363)
Q Consensus 295 ~l~~~~~~~~~~l~~L~~L~L~~n~i~ 321 (363)
.+..+|+. +++|.+|+.|++.||+|.
T Consensus 516 dlq~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 516 DLQQIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred chhhCChh-hccccceeEEEecCCccC
Confidence 99999987 699999999999999998
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=1e-20 Score=167.49 Aligned_cols=243 Identities=22% Similarity=0.282 Sum_probs=171.7
Q ss_pred CcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccC-CcCccccc-cccCCCCCCE
Q 017986 93 PITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRT-NSIQCVPD-QIDGLTGLKK 170 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~-n~i~~i~~-~~~~l~~L~~ 170 (363)
.......+.+..+.|..++..+|..++.|+.|+|++|+|+.|.+.+|..++.+.+|-+-+ |+|+.+|. .|.++.+++.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 445677888999999999999999999999999999999999999999998888877665 89999964 5889999999
Q ss_pred EEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCc-cccCCCCCCEEEcccCcCC---Cc----------chhhcC
Q 017986 171 LLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPG-ILGHLTALQHLDVSNNKLT---TL----------PTEIGL 236 (363)
Q Consensus 171 L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~i~---~l----------~~~~~~ 236 (363)
|.+.-|.+.. +....|..+++|..|.+.+|.+..+++ .+..+..++++.+..|.+- .+ |-.+++
T Consensus 145 LllNan~i~C--ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 145 LLLNANHINC--IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HhcChhhhcc--hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 9999998875 666789999999999999999998875 6777888888877766521 01 111111
Q ss_pred CCC----------------------CCEE---eccCCcCc-cCC-ccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCE
Q 017986 237 LSK----------------------LEVL---KANNNRIS-FLP-ESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKA 288 (363)
Q Consensus 237 ~~~----------------------L~~L---~l~~n~i~-~~~-~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~ 288 (363)
..- ++.+ ..+.+... ..| ..|..+++|+.|+|++|.++.+ +.+|.....+++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 110 0001 00111111 112 1356666777777777777666 445666666677
Q ss_pred EECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHHH
Q 017986 289 LHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDKR 337 (363)
Q Consensus 289 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~~ 337 (363)
|.|..|+|..+...+|.++..|++|+|.+|+||+..+..|..+-+|..+
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 7777777666666666667777777777777766666666555555444
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.76 E-value=2.7e-20 Score=164.92 Aligned_cols=275 Identities=19% Similarity=0.243 Sum_probs=207.9
Q ss_pred CCccccccCCCcccccccccccccccCCCCChHHhhcccceeeccc-ccCccCChhhhhcCCceeEEEccCCcCccc-cc
Q 017986 83 DGPILKEAQSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAE-HNLKAIPDEVWDCSPFIRVLDIRTNSIQCV-PD 160 (363)
Q Consensus 83 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~~ 160 (363)
...++..+++....++.+.++++.|..+.+.+|..++.+..|.+.+ |+|+++|.++|..+..++.|.+.-|++..+ .+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 3445566777888999999999999999999999999998887776 899999999999999999999999999977 45
Q ss_pred cccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCC---CC----------CccccCCCCCCEEEc-----
Q 017986 161 QIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLN---SL----------PGILGHLTALQHLDV----- 222 (363)
Q Consensus 161 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~---~l----------~~~l~~l~~L~~L~l----- 222 (363)
.|..++++..|.+..|.+.. +....|..+..++.+.+..|.+- .+ |-.++.........+
T Consensus 159 al~dL~~l~lLslyDn~~q~--i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri 236 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDNKIQS--ICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI 236 (498)
T ss_pred HHHHhhhcchhcccchhhhh--hccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHh
Confidence 68899999999999998873 55557888888998888777622 11 111111111111111
Q ss_pred --------------------ccCcCCC-cc-hhhcCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCCCCCCCC-Ch
Q 017986 223 --------------------SNNKLTT-LP-TEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLLSEL-PV 278 (363)
Q Consensus 223 --------------------~~n~i~~-l~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~n~l~~l-~~ 278 (363)
+.+.... .| ..|..+++|+.|++++|.++.+.+ +|.....+++|.|..|++..+ ..
T Consensus 237 ~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~ 316 (498)
T KOG4237|consen 237 NQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSG 316 (498)
T ss_pred cccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHH
Confidence 1111221 23 247889999999999999998864 688999999999999999987 45
Q ss_pred hccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh-hhcccCchHHHHH-HHHhh-----ccccceeec
Q 017986 279 TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA-LRQLEGWDDFDKR-RRAKH-----QKQLDFRVM 351 (363)
Q Consensus 279 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~l~~~-~~~~~-----~~~~~~~~~ 351 (363)
.|..+..|++|+|.+|+|+.+.+.+|..+..|.+|++-.|++.|.+ +..+..|-+=+.. ....+ .+++++..+
T Consensus 317 ~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv 396 (498)
T KOG4237|consen 317 MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDV 396 (498)
T ss_pred hhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhc
Confidence 6889999999999999999999999999999999999999999885 3344444222210 11112 235556666
Q ss_pred cCCCCCCc
Q 017986 352 GSTEFDEG 359 (363)
Q Consensus 352 ~~~~~~~~ 359 (363)
-.++|.||
T Consensus 397 ~~~~~~c~ 404 (498)
T KOG4237|consen 397 AFGDFRCG 404 (498)
T ss_pred cccccccC
Confidence 66677665
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=1.2e-17 Score=165.59 Aligned_cols=123 Identities=33% Similarity=0.405 Sum_probs=88.5
Q ss_pred CcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCC
Q 017986 193 HLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNL 272 (363)
Q Consensus 193 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~ 272 (363)
+|+.|++++|+++.+|.. ..+|+.|++++|.++.+|.. +.+|+.|++++|.++.+|.. .++|+.|++++|.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 343 GLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR 413 (788)
T ss_pred ccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCc
Confidence 455666666666555532 23455556666666555432 24678888888888877643 3578889999999
Q ss_pred CCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcc
Q 017986 273 LSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQL 328 (363)
Q Consensus 273 l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l 328 (363)
++.+|.. ..+|+.|++++|+|+.+|.. +..+++|+.|+|++|++++..+..+
T Consensus 414 LssIP~l---~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 414 LTSLPML---PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCCCcc---hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHHHH
Confidence 8888753 34688899999999999866 6789999999999999998766654
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=1.9e-20 Score=166.22 Aligned_cols=204 Identities=29% Similarity=0.482 Sum_probs=100.2
Q ss_pred HHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCC------------
Q 017986 115 SERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDS------------ 182 (363)
Q Consensus 115 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~------------ 182 (363)
+..+..+.++++.+|.+.+.|+.+... ..++.++.++|++..+|..+..+.++.+++++.|.+....
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l-~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGEL-EALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHH-HHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence 344445555555555555555444322 2344445555555555444444445555555554444311
Q ss_pred ---------CChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccC
Q 017986 183 ---------ISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL 253 (363)
Q Consensus 183 ---------~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~ 253 (363)
.+ ..+..+.+|..+++.+|.+..+|+..-.|+.|++|+...|.++.+|+.++.+.+|..|++..|.+..+
T Consensus 143 ~~~~N~i~slp-~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 143 DATNNQISSLP-EDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred hccccccccCc-hHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC
Confidence 11 22334444444555555555444333335555555555555555555555555555555555555555
Q ss_pred CccccCCCCCcEEECCCCCCCCCChhc-cCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccch
Q 017986 254 PESIGNCTSLIEIDLSSNLLSELPVTL-ENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITM 322 (363)
Q Consensus 254 ~~~~~~~~~L~~L~L~~n~l~~l~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 322 (363)
| .|.+|..|.+++++.|.|..+|... .+++++..||+..|++++.|.++ .-+.+|..||+++|.|++
T Consensus 222 P-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~-clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 222 P-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-CLLRSLERLDLSNNDISS 289 (565)
T ss_pred C-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHH-HHhhhhhhhcccCCcccc
Confidence 4 3455555555555555555554433 25555555555555555555442 334455555555555554
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=8.3e-20 Score=144.64 Aligned_cols=177 Identities=28% Similarity=0.439 Sum_probs=110.7
Q ss_pred CceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEc
Q 017986 143 PFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDV 222 (363)
Q Consensus 143 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l 222 (363)
..++.|.+++|+++.+|+.+..+.+|+.|++++|++.... ..++.++.|+.|+++-|++..+|..|+.++.|+.||+
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp---~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELP---TSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcC---hhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 3456666666666666666666666666666666665422 2356666666666666666666666666666666666
Q ss_pred ccCcCC--CcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCC
Q 017986 223 SNNKLT--TLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLP 300 (363)
Q Consensus 223 ~~n~i~--~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~ 300 (363)
.+|.+. .+|..|..+..|+.|+++.|.+..+|..++.+++|+.|.+..|.+-++|..++.+..|++|++.+|.++.+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 666655 456666666666666666666666666666666666666666666666666666667777777777777666
Q ss_pred hhhhhCC---CCCCEEEccCCccchh
Q 017986 301 TTLFSKC---VQLSTLELHNTEITMD 323 (363)
Q Consensus 301 ~~~~~~l---~~L~~L~L~~n~i~~~ 323 (363)
++. +++ .+-+++.+.+|++-.-
T Consensus 190 pel-~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 190 PEL-ANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred hhh-hhhhhhhhHHHHhhhhCCCCCh
Confidence 542 222 2223455667765443
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=6.7e-17 Score=161.06 Aligned_cols=183 Identities=26% Similarity=0.420 Sum_probs=84.7
Q ss_pred ccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEc
Q 017986 120 ATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSI 199 (363)
Q Consensus 120 ~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 199 (363)
.++.|++++|.++.+|...+ ++|++|++++|+++.+|..+ ..+|+.|++++|.+.. ++.. + ..+|+.|++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~--LP~~-l--~s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITE--LPER-L--PSALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhh--hccccEEECcCCccCc--CChh-H--hCCCCEEEC
Confidence 34555555555555554432 24555555555555444332 1245555555555442 2211 1 124455555
Q ss_pred CCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhc-------------------CCCCCCEEeccCCcCccCCccccCC
Q 017986 200 SRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIG-------------------LLSKLEVLKANNNRISFLPESIGNC 260 (363)
Q Consensus 200 ~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~-------------------~~~~L~~L~l~~n~i~~~~~~~~~~ 260 (363)
++|.++.+|..+. ++|+.|++++|.++.+|..+. ..++|+.|++++|.++.+|..+.
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~-- 345 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP-- 345 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc--
Confidence 5555554443221 245555555554444433221 11345555555555555443332
Q ss_pred CCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccc
Q 017986 261 TSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEIT 321 (363)
Q Consensus 261 ~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 321 (363)
++|+.|++++|.++.+|..+ .+.|+.|++++|.++.+|.... ..|+.|++++|+++
T Consensus 346 ~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~---~sL~~LdLs~N~L~ 401 (754)
T PRK15370 346 PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP---AALQIMQASRNNLV 401 (754)
T ss_pred CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH---HHHHHHhhccCCcc
Confidence 35555555555555554433 2355555555555555554422 23555555555554
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=3.2e-17 Score=163.30 Aligned_cols=208 Identities=24% Similarity=0.404 Sum_probs=149.8
Q ss_pred cccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCC
Q 017986 96 SRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDA 175 (363)
Q Consensus 96 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~ 175 (363)
.++.|.+.++.+..++.. ....|+.|++++|.+..+|..+. ++|++|++++|+++.+|..+. ++|+.|++++
T Consensus 221 nL~~L~Ls~N~LtsLP~~---l~~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQLTSIPAT---LPDTIQEMELSINRITELPERLP---SALQSLDLFHNKISCLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCccccCChh---hhccccEEECcCCccCcCChhHh---CCCCEEECcCCccCccccccC--CCCcEEECCC
Confidence 456666666665544321 12356667777777777666543 357777777777776665542 4677777777
Q ss_pred CCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCc
Q 017986 176 NDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPE 255 (363)
Q Consensus 176 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 255 (363)
|.++. ++. .+ .++|+.|++++|.++.+|..+ .++|+.|++++|.++.+|..+. ++|+.|++++|.+..+|.
T Consensus 293 N~Lt~--LP~-~l--p~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~ 363 (754)
T PRK15370 293 NSIRT--LPA-HL--PSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPE 363 (754)
T ss_pred Ccccc--Ccc-cc--hhhHHHHHhcCCccccCCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCCh
Confidence 77664 221 11 135777777777777776433 3579999999999998887653 799999999999998887
Q ss_pred cccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChh---hhhCCCCCCEEEccCCccchhh
Q 017986 256 SIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT---LFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 256 ~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
.+. ++|+.|++++|.+..+|..+. ..|+.|++++|+++.+|.. .++.++.+..+++.+|+++...
T Consensus 364 ~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~t 431 (754)
T PRK15370 364 TLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERT 431 (754)
T ss_pred hhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHH
Confidence 553 689999999999999987654 4799999999999988753 3345688999999999998643
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-19 Score=143.89 Aligned_cols=163 Identities=30% Similarity=0.493 Sum_probs=146.6
Q ss_pred hhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCE
Q 017986 117 RWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTV 196 (363)
Q Consensus 117 ~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 196 (363)
.+...+.|.+++|.++.+|+++.. +.+|+.|++.+|+++.+|..++.+++|++|++..|.+.- .+ ..|..+|.|++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~-l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~--lp-rgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAE-LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI--LP-RGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHH-hhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc--Cc-cccCCCchhhh
Confidence 445567789999999999998754 478999999999999999999999999999999998873 23 57899999999
Q ss_pred EEcCCCcCC--CCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCC
Q 017986 197 LSISRNCLN--SLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLS 274 (363)
Q Consensus 197 L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~ 274 (363)
||+.+|.+. .+|+.|..+..|+.|++++|.++.+|+.++.+++|+.|.+..|.+-++|..++.+..|++|++.+|+++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 999999888 689889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhccCC
Q 017986 275 ELPVTLENL 283 (363)
Q Consensus 275 ~l~~~~~~~ 283 (363)
-+|..++.+
T Consensus 187 vlppel~~l 195 (264)
T KOG0617|consen 187 VLPPELANL 195 (264)
T ss_pred ecChhhhhh
Confidence 998766543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=8.7e-19 Score=169.92 Aligned_cols=238 Identities=21% Similarity=0.259 Sum_probs=174.9
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEc
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLL 173 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L 173 (363)
...++.+.+..+.+..++ ..+..+..++.+....|.++.+|..++.. .+|+.|++.+|.+..+|+...++.+|++|+|
T Consensus 240 p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~-~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRI-TSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhh-hhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 334666667777766666 67777788888888888888777776654 5677777778888878777777888888888
Q ss_pred CCCCCCCCCCChHhh-------------------------cCCCCcCEEEcCCCcCCC-CCccccCCCCCCEEEcccCcC
Q 017986 174 DANDLSNDSISWVQL-------------------------AKLKHLTVLSISRNCLNS-LPGILGHLTALQHLDVSNNKL 227 (363)
Q Consensus 174 ~~n~~~~~~~~~~~~-------------------------~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l~~n~i 227 (363)
..|.+... +...+ ...+.|+.|++.+|.++. .-+.+..+++|+.|++++|++
T Consensus 318 ~~N~L~~l--p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 318 QSNNLPSL--PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred hhcccccc--chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 88877641 11111 112346667777777662 223467778899999999999
Q ss_pred CCcchh-hcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhC
Q 017986 228 TTLPTE-IGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSK 306 (363)
Q Consensus 228 ~~l~~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 306 (363)
..+|+. +.++..|+.|++++|.++.+|..+..+..|++|...+|.+..+| .+..++.|+.+|+++|+++.+.....-.
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 988755 57888999999999999999888888999999999999999998 7788999999999999988554221122
Q ss_pred CCCCCEEEccCCccchhhhhcccCchHHHH
Q 017986 307 CVQLSTLELHNTEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 307 l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~ 336 (363)
-++|++||++||.-.....+.|+.+..+..
T Consensus 475 ~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~ 504 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRLVFDHKTLKVLKSLSQ 504 (1081)
T ss_pred CcccceeeccCCcccccchhhhHHhhhhhh
Confidence 279999999999865555555555555444
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=4.9e-18 Score=164.78 Aligned_cols=214 Identities=28% Similarity=0.353 Sum_probs=135.3
Q ss_pred ccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEc
Q 017986 120 ATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSI 199 (363)
Q Consensus 120 ~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 199 (363)
.+++++++.|.+..+| +....+++|+.+...+|+++.+|..+...++|+.|.+..|.+.. ++ ....++..|++|++
T Consensus 242 nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~y--ip-~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEY--IP-PFLEGLKSLRTLDL 317 (1081)
T ss_pred cceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhh--CC-Ccccccceeeeeee
Confidence 3344444444444444 22233344444444444444444444444444444444444442 22 12344556666666
Q ss_pred CCCcCCCCCcccc--------------------------CCCCCCEEEcccCcCCC-cchhhcCCCCCCEEeccCCcCcc
Q 017986 200 SRNCLNSLPGILG--------------------------HLTALQHLDVSNNKLTT-LPTEIGLLSKLEVLKANNNRISF 252 (363)
Q Consensus 200 ~~n~l~~l~~~l~--------------------------~l~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L~l~~n~i~~ 252 (363)
..|.+..+|+.+. .++.|+.|++.+|.++. .-+.+.+..+|+.|+|++|.+..
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 6666665543211 11233444444444442 11235666788888888888888
Q ss_pred CCc-cccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCc
Q 017986 253 LPE-SIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGW 331 (363)
Q Consensus 253 ~~~-~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l 331 (363)
+|. .+.++..|+.|+|+||.++.+|..+..+..|++|...+|.+..+|. +..+++|+++|++.|.++.........+
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe--~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE--LAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechh--hhhcCcceEEecccchhhhhhhhhhCCC
Confidence 885 4678888888889999888888888888888888888888888884 6788999999999999998877777777
Q ss_pred hHHHHHHH
Q 017986 332 DDFDKRRR 339 (363)
Q Consensus 332 ~~l~~~~~ 339 (363)
+.|+.++.
T Consensus 476 p~LkyLdl 483 (1081)
T KOG0618|consen 476 PNLKYLDL 483 (1081)
T ss_pred cccceeec
Confidence 78777443
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1e-15 Score=151.92 Aligned_cols=196 Identities=30% Similarity=0.351 Sum_probs=103.0
Q ss_pred cccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCC
Q 017986 96 SRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDA 175 (363)
Q Consensus 96 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~ 175 (363)
.++.|.+.++.+..++. ..+.|++|++++|+++.+|.. .++|+.|++++|.+..+|.. ..+|+.|++++
T Consensus 223 ~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~ 291 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFG 291 (788)
T ss_pred CCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECcC
Confidence 46666677666666542 246677777777777777642 24567777777766665542 24556666666
Q ss_pred CCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCc
Q 017986 176 NDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPE 255 (363)
Q Consensus 176 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 255 (363)
|.++. ++ ...++|+.|++++|.++.+|... ..|+.|++++|.++.+|. ...+|+.|++++|.++.+|.
T Consensus 292 N~Lt~--LP----~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 292 NQLTS--LP----VLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred Ccccc--cc----ccccccceeECCCCccccCCCCc---ccccccccccCccccccc---cccccceEecCCCccCCCCC
Confidence 66653 22 12355666666666666554321 234444444444444432 11244455555554444432
Q ss_pred ccc-----------------CCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCC
Q 017986 256 SIG-----------------NCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNT 318 (363)
Q Consensus 256 ~~~-----------------~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 318 (363)
... ...+|+.|++++|.+..+|.. .++|+.|++++|.++.+|.. ..+|+.|++++|
T Consensus 360 lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~N 432 (788)
T PRK15387 360 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML----PSGLLSLSVYRN 432 (788)
T ss_pred CCcccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc----hhhhhhhhhccC
Confidence 110 113455555555555555432 23455566666655555431 134555666666
Q ss_pred ccc
Q 017986 319 EIT 321 (363)
Q Consensus 319 ~i~ 321 (363)
+|+
T Consensus 433 qLt 435 (788)
T PRK15387 433 QLT 435 (788)
T ss_pred ccc
Confidence 655
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=9.1e-16 Score=140.68 Aligned_cols=232 Identities=21% Similarity=0.251 Sum_probs=158.8
Q ss_pred cccccccccccccCCCC----ChHHhhcccceeecccccCccCCh------hhhhcCCceeEEEccCCcCcc-ccccccC
Q 017986 96 SRKTDRVRDMKMVPVGK----TSSERWKATGVIALAEHNLKAIPD------EVWDCSPFIRVLDIRTNSIQC-VPDQIDG 164 (363)
Q Consensus 96 ~l~~l~~~~~~~~~~~~----~~~~~~~~l~~L~l~~n~i~~i~~------~~~~~~~~L~~L~L~~n~i~~-i~~~~~~ 164 (363)
.++.+.+.++.+...+. ..+...+.++.+++.++.+..++. ..+..+++|+.|++++|.+.. .+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 36666666666533221 123344558888888887763222 334557789999999998863 2333333
Q ss_pred C---CCCCEEEcCCCCCCCCCCCh--HhhcCC-CCcCEEEcCCCcCC-----CCCccccCCCCCCEEEcccCcCCC----
Q 017986 165 L---TGLKKLLLDANDLSNDSISW--VQLAKL-KHLTVLSISRNCLN-----SLPGILGHLTALQHLDVSNNKLTT---- 229 (363)
Q Consensus 165 l---~~L~~L~L~~n~~~~~~~~~--~~~~~l-~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n~i~~---- 229 (363)
+ ++|++|++++|.+.+..... ..+..+ ++|+.|++++|.++ .++..+..+..|++|++++|.++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 3 45999999999887422221 234556 88999999999887 334456667789999999998872
Q ss_pred -cchhhcCCCCCCEEeccCCcCcc-----CCccccCCCCCcEEECCCCCCCCC-Chhc-c----CCCCCCEEECCCCCCC
Q 017986 230 -LPTEIGLLSKLEVLKANNNRISF-----LPESIGNCTSLIEIDLSSNLLSEL-PVTL-E----NLHYLKALHLDNNALK 297 (363)
Q Consensus 230 -l~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~L~~n~l~~l-~~~~-~----~~~~L~~L~L~~n~l~ 297 (363)
++..+...++|+.|++++|.+.. ++..+..+++|++|++++|.++.. ...+ . ..+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 33445666799999999998862 233466788999999999988842 1111 1 2478999999999887
Q ss_pred CCCh----hhhhCCCCCCEEEccCCccchhhhhc
Q 017986 298 SLPT----TLFSKCVQLSTLELHNTEITMDALRQ 327 (363)
Q Consensus 298 ~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~ 327 (363)
+... ..+..+++|+.+++++|.++.++...
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 3222 34566789999999999999875443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=1.1e-15 Score=140.25 Aligned_cols=209 Identities=27% Similarity=0.304 Sum_probs=155.1
Q ss_pred hHHhhcccceeecccccCcc-----CChhhhhcCCceeEEEccCCcCcc-------ccccccCCCCCCEEEcCCCCCCCC
Q 017986 114 SSERWKATGVIALAEHNLKA-----IPDEVWDCSPFIRVLDIRTNSIQC-------VPDQIDGLTGLKKLLLDANDLSND 181 (363)
Q Consensus 114 ~~~~~~~l~~L~l~~n~i~~-----i~~~~~~~~~~L~~L~L~~n~i~~-------i~~~~~~l~~L~~L~L~~n~~~~~ 181 (363)
.+..+..+++++++++.++. ++.. ....+.+++++++++.+.. ++..+..+++|+.|++++|.+...
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 45677779999999999853 3322 3455779999999987763 234567789999999999998742
Q ss_pred CCChHhhcCC---CCcCEEEcCCCcCCC-----CCccccCC-CCCCEEEcccCcCC-----CcchhhcCCCCCCEEeccC
Q 017986 182 SISWVQLAKL---KHLTVLSISRNCLNS-----LPGILGHL-TALQHLDVSNNKLT-----TLPTEIGLLSKLEVLKANN 247 (363)
Q Consensus 182 ~~~~~~~~~l---~~L~~L~l~~n~l~~-----l~~~l~~l-~~L~~L~l~~n~i~-----~l~~~~~~~~~L~~L~l~~ 247 (363)
....+..+ ++|++|++++|.++. +...+..+ ++|+.|++++|.++ .++..+..+++|++|++++
T Consensus 97 --~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 97 --GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred --HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 12233344 449999999998872 33445666 89999999999988 2344567778999999999
Q ss_pred CcCcc-----CCccccCCCCCcEEECCCCCCCCC-----ChhccCCCCCCEEECCCCCCCCCChhhh-hC----CCCCCE
Q 017986 248 NRISF-----LPESIGNCTSLIEIDLSSNLLSEL-----PVTLENLHYLKALHLDNNALKSLPTTLF-SK----CVQLST 312 (363)
Q Consensus 248 n~i~~-----~~~~~~~~~~L~~L~L~~n~l~~l-----~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~----l~~L~~ 312 (363)
|.+.. ++..+..+++|+.|++++|.+... ...+..+++|++|++++|.+++.....+ .. .+.|+.
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 99872 333456668999999999998733 3456778999999999999986432222 22 379999
Q ss_pred EEccCCccchhhh
Q 017986 313 LELHNTEITMDAL 325 (363)
Q Consensus 313 L~L~~n~i~~~~~ 325 (363)
|++++|.++..+.
T Consensus 255 L~l~~n~i~~~~~ 267 (319)
T cd00116 255 LSLSCNDITDDGA 267 (319)
T ss_pred EEccCCCCCcHHH
Confidence 9999999985543
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.55 E-value=2.1e-13 Score=144.40 Aligned_cols=121 Identities=30% Similarity=0.449 Sum_probs=56.0
Q ss_pred CcCEEEcCCC-cCCCCCccccCCCCCCEEEcccC-cCCCcchhhcCCCCCCEEeccCCc-CccCCccccCCCCCcEEECC
Q 017986 193 HLTVLSISRN-CLNSLPGILGHLTALQHLDVSNN-KLTTLPTEIGLLSKLEVLKANNNR-ISFLPESIGNCTSLIEIDLS 269 (363)
Q Consensus 193 ~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~n-~i~~l~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~L~ 269 (363)
+|+.|++++| .+..+|..++.+++|+.|++++| .+..+|..+ .+++|+.|++++|. +..+|.. ..+|+.|+++
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 3444444444 22334444444444444444443 233333332 34444444444442 2222211 2345555555
Q ss_pred CCCCCCCChhccCCCCCCEEECCCC-CCCCCChhhhhCCCCCCEEEccCC
Q 017986 270 SNLLSELPVTLENLHYLKALHLDNN-ALKSLPTTLFSKCVQLSTLELHNT 318 (363)
Q Consensus 270 ~n~l~~l~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 318 (363)
+|.+..+|..+..+++|+.|++++| +++.++.. ...+++|+.+++++|
T Consensus 855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~-~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN-ISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCccChHHHhcCCCCCEEECCCCCCcCccCcc-cccccCCCeeecCCC
Confidence 5555555555555566666666553 45554433 344555555555554
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=3.2e-14 Score=150.49 Aligned_cols=191 Identities=25% Similarity=0.341 Sum_probs=135.9
Q ss_pred cccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEE
Q 017986 119 KATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLS 198 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~ 198 (363)
..|+.|.+.++.++.+|..+ ...+|++|++++|++..++..+..+++|+.|+++++.... .++ .+..+++|+.|+
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip--~ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIP--DLSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCC--ccccCCcccEEE
Confidence 45788888888888888765 3467888888888888887777788888888888765432 233 366778888888
Q ss_pred cCCC-cCCCCCccccCCCCCCEEEcccC-cCCCcchhhcCCCCCCEEeccCCcC-ccCCccccCCCCCcEEECCCCCCCC
Q 017986 199 ISRN-CLNSLPGILGHLTALQHLDVSNN-KLTTLPTEIGLLSKLEVLKANNNRI-SFLPESIGNCTSLIEIDLSSNLLSE 275 (363)
Q Consensus 199 l~~n-~l~~l~~~l~~l~~L~~L~l~~n-~i~~l~~~~~~~~~L~~L~l~~n~i-~~~~~~~~~~~~L~~L~L~~n~l~~ 275 (363)
+++| .+..+|..+..+++|+.|++++| .+..+|..+ .+++|+.|++++|.. ..+|.. ..+|+.|++++|.+..
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE 739 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc
Confidence 8877 56678877888888888888876 566666544 677788888877743 233321 3466777777777666
Q ss_pred CChhc------------------------------cCCCCCCEEECCCCC-CCCCChhhhhCCCCCCEEEccCCc
Q 017986 276 LPVTL------------------------------ENLHYLKALHLDNNA-LKSLPTTLFSKCVQLSTLELHNTE 319 (363)
Q Consensus 276 l~~~~------------------------------~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 319 (363)
+|..+ ..+++|+.|++++|. +..+|.. ++++++|+.|++++|.
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s-i~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS-IQNLHKLEHLEIENCI 813 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh-hhCCCCCCEEECCCCC
Confidence 55321 123567888888874 4456544 7889999999999875
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.52 E-value=3.5e-16 Score=144.83 Aligned_cols=213 Identities=33% Similarity=0.484 Sum_probs=174.8
Q ss_pred cccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCC
Q 017986 100 DRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLS 179 (363)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~ 179 (363)
|..+..+-...+... -.+......+++.|++..+|..+... -.|+.+.+.+|.+..+|..++.+..|++|+|+.|+++
T Consensus 57 Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~elp~~~~~f-~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 57 LSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSELPEEACAF-VSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred cccchhhcCCCcccc-ccccchhhhhccccccccCchHHHHH-HHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh
Confidence 334444444455444 45556678899999999999876433 3588889999999999999999999999999999998
Q ss_pred CCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccC
Q 017986 180 NDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGN 259 (363)
Q Consensus 180 ~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 259 (363)
. .+ ..+..|| |+.|-+++|+++.+|+.++....|..|+.+.|.+..+|+.++.+.+|+.|.+..|++..+|+.+..
T Consensus 135 ~--lp-~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~ 210 (722)
T KOG0532|consen 135 H--LP-DGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS 210 (722)
T ss_pred c--CC-hhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC
Confidence 5 33 3455565 899999999999999888888899999999999999999999999999999999999999988885
Q ss_pred CCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhh--hCCCCCCEEEccCCc
Q 017986 260 CTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLF--SKCVQLSTLELHNTE 319 (363)
Q Consensus 260 ~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~ 319 (363)
+ .|..||++.|++..+|-.|..+.+|++|-|.+|.+++-|.++. +...-.++|+.+-++
T Consensus 211 L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 5 4899999999999999999999999999999999998887654 233445677777774
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.51 E-value=1.1e-15 Score=141.51 Aligned_cols=204 Identities=33% Similarity=0.450 Sum_probs=177.2
Q ss_pred hHHhhcccceeecccccCccCChhhhh-cCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCC
Q 017986 114 SSERWKATGVIALAEHNLKAIPDEVWD-CSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLK 192 (363)
Q Consensus 114 ~~~~~~~l~~L~l~~n~i~~i~~~~~~-~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 192 (363)
.++....-..|.|++-.++++|...+. .+..-...|++.|++..+|..++.+..|+.+.+..|.+.. ++ ..+.++.
T Consensus 45 ~leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~--ip-~~i~~L~ 121 (722)
T KOG0532|consen 45 ALEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT--IP-EAICNLE 121 (722)
T ss_pred HHHHHhhhcccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcccee--cc-hhhhhhh
Confidence 445555667888999999999876654 2344566899999999999999889999999999998874 43 4678899
Q ss_pred CcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCC
Q 017986 193 HLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNL 272 (363)
Q Consensus 193 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~ 272 (363)
.|..++++.|+++.+|..+..++ |+.|-+++|+++.+|+.++....|..|+.+.|.+..+|..++++.+|+.|.+..|.
T Consensus 122 ~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 122 ALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred HHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh
Confidence 99999999999999997777664 89999999999999999998899999999999999999999999999999999999
Q ss_pred CCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchh
Q 017986 273 LSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 273 l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
+..+|..+..+ .|..||+++|+++.||.. |..|.+|++|-|.+|+++.-
T Consensus 201 l~~lp~El~~L-pLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 201 LEDLPEELCSL-PLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhCCHHHhCC-ceeeeecccCceeecchh-hhhhhhheeeeeccCCCCCC
Confidence 99999888855 589999999999999977 89999999999999999753
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.42 E-value=3.6e-13 Score=127.29 Aligned_cols=207 Identities=32% Similarity=0.432 Sum_probs=154.4
Q ss_pred eeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCC-CCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCC
Q 017986 123 VIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLT-GLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISR 201 (363)
Q Consensus 123 ~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 201 (363)
.+...++.+..-...... .+.++.|++.+|.++.++.....+. +|+.|++++|.+.. ++ .....+++|+.|+++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~-~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~-~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LP-SPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhc-ccceeEEecCCcccccCccccccchhhcccccccccchhh--hh-hhhhccccccccccCC
Confidence 466677666333333322 2568888888888888877666664 88888888888875 21 2467788888888888
Q ss_pred CcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhcc
Q 017986 202 NCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLE 281 (363)
Q Consensus 202 n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~ 281 (363)
|++..++......+.|+.|++++|.+..+|.....+..|+++.+++|.+...+..+..+.++..+.+.+|++..++..++
T Consensus 173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 252 (394)
T COG4886 173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252 (394)
T ss_pred chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhc
Confidence 88888887655778888888888888888776666677888888888766666667778888888888888887676777
Q ss_pred CCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHH
Q 017986 282 NLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335 (363)
Q Consensus 282 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~ 335 (363)
.++.++.|++++|.++.++. +....+++.|++++|.++.........+....
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~~~~~~~ 304 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLE 304 (394)
T ss_pred cccccceecccccccccccc--ccccCccCEEeccCccccccchhhhccchhHH
Confidence 88888888888888888876 67778888888888888766554444433333
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.3e-14 Score=128.13 Aligned_cols=157 Identities=20% Similarity=0.224 Sum_probs=63.6
Q ss_pred cccccccccccccccCCCC-ChHHhhcccceeecccccCccCC--hhhhhcCCceeEEEccCCcCcccccc--ccCCCCC
Q 017986 94 ITSRKTDRVRDMKMVPVGK-TSSERWKATGVIALAEHNLKAIP--DEVWDCSPFIRVLDIRTNSIQCVPDQ--IDGLTGL 168 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~--~~~~~~~~~L~~L~L~~n~i~~i~~~--~~~l~~L 168 (363)
+.+++...+++..+...+. .....++.++.|+++.|-+.... ..+...+|+|+.|+|+.|++....+. -..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3344444444444443332 23344445555555554443221 12233444555555555544422111 1234445
Q ss_pred CEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCc-CCCCCccccCCCCCCEEEcccCcCCCcc--hhhcCCCCCCEEec
Q 017986 169 KKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNC-LNSLPGILGHLTALQHLDVSNNKLTTLP--TEIGLLSKLEVLKA 245 (363)
Q Consensus 169 ~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~l~~l~~L~~L~l~~n~i~~l~--~~~~~~~~L~~L~l 245 (363)
+.|.++.|.++...+. .....+|+|+.|++..|. +..-......+..|++|++++|.+-..+ ...+.++.|+.|++
T Consensus 200 K~L~l~~CGls~k~V~-~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQ-WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred heEEeccCCCCHHHHH-HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 5555555544432222 123444555555554442 1111111222334444444444443332 22344444444444
Q ss_pred cCCcCc
Q 017986 246 NNNRIS 251 (363)
Q Consensus 246 ~~n~i~ 251 (363)
+.++++
T Consensus 279 s~tgi~ 284 (505)
T KOG3207|consen 279 SSTGIA 284 (505)
T ss_pred cccCcc
Confidence 444444
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=9.2e-14 Score=125.29 Aligned_cols=223 Identities=22% Similarity=0.245 Sum_probs=168.8
Q ss_pred HhhcccceeecccccCccCCh-hhhhcCCceeEEEccCCcCcc---ccccccCCCCCCEEEcCCCCCCCCCCChHhhcCC
Q 017986 116 ERWKATGVIALAEHNLKAIPD-EVWDCSPFIRVLDIRTNSIQC---VPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKL 191 (363)
Q Consensus 116 ~~~~~l~~L~l~~n~i~~i~~-~~~~~~~~L~~L~L~~n~i~~---i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l 191 (363)
.++.+|+++.+.++.+...+. .....+++++.|||++|-+.. +......+++|+.|+++.|.+... .+...-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-ISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC-ccccchhhh
Confidence 467889999999999887664 456678999999999997763 334457799999999999998752 222223467
Q ss_pred CCcCEEEcCCCcCC--CCCccccCCCCCCEEEcccCc-CCCcchhhcCCCCCCEEeccCCcCccCC--ccccCCCCCcEE
Q 017986 192 KHLTVLSISRNCLN--SLPGILGHLTALQHLDVSNNK-LTTLPTEIGLLSKLEVLKANNNRISFLP--ESIGNCTSLIEI 266 (363)
Q Consensus 192 ~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~-i~~l~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L 266 (363)
++|+.|.++.|.++ .+...+..+++|..|++..|. +..-......+..|+.|+|++|.+.+.+ ...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 88999999999998 455666788999999999994 3322233456778999999999998776 357889999999
Q ss_pred ECCCCCCCCC--Chh-----ccCCCCCCEEECCCCCCCCCCh-hhhhCCCCCCEEEccCCccchhh----hhcccCchHH
Q 017986 267 DLSSNLLSEL--PVT-----LENLHYLKALHLDNNALKSLPT-TLFSKCVQLSTLELHNTEITMDA----LRQLEGWDDF 334 (363)
Q Consensus 267 ~L~~n~l~~l--~~~-----~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~----~~~l~~l~~l 334 (363)
+++.+++.++ |.. ...+++|+.|++..|++.+++. .-...+++|+.|.+..|.++-+. ...++.++.+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l 356 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQL 356 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhh
Confidence 9999999866 332 3567899999999999987764 22345678888999999997653 2344555555
Q ss_pred HHHHH
Q 017986 335 DKRRR 339 (363)
Q Consensus 335 ~~~~~ 339 (363)
..+.-
T Consensus 357 ~~LN~ 361 (505)
T KOG3207|consen 357 VKLND 361 (505)
T ss_pred hhhcc
Confidence 55543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.37 E-value=1.8e-12 Score=106.60 Aligned_cols=139 Identities=28% Similarity=0.339 Sum_probs=45.2
Q ss_pred CCCCCCEEEcccCcCCCcchhhc-CCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhc-cCCCCCCEEE
Q 017986 213 HLTALQHLDVSNNKLTTLPTEIG-LLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTL-ENLHYLKALH 290 (363)
Q Consensus 213 ~l~~L~~L~l~~n~i~~l~~~~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~-~~~~~L~~L~ 290 (363)
+...+++|++.+|.|+.+. .++ .+.+|+.|++++|.|+.+. .+..++.|+.|++++|.|+++...+ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3445666677777666552 343 4566777777777776663 4566677777777777777775444 3567777777
Q ss_pred CCCCCCCCCCh-hhhhCCCCCCEEEccCCccchhhhhcccCchHHHHHHHHhhccccceeeccCCCCCCc
Q 017986 291 LDNNALKSLPT-TLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDKRRRAKHQKQLDFRVMGSTEFDEG 359 (363)
Q Consensus 291 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (363)
+++|+|.++.. ..++.+++|+.|++.+|+++... --+.-........+.+|.......+.+++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~------~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A 158 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK------NYRLFVIYKLPSLKVLDGQDVTEEERQEA 158 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST------THHHHHHHH-TT-SEETTEETTS-B----
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchh------hHHHHHHHHcChhheeCCEEccHHHhccc
Confidence 77777765432 34566777777777777776431 11222223344445566655555554443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=1.7e-12 Score=106.82 Aligned_cols=106 Identities=33% Similarity=0.472 Sum_probs=24.4
Q ss_pred CCCCCCEEEcCCCCCCCCCCChHhhc-CCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhh-cCCCCCC
Q 017986 164 GLTGLKKLLLDANDLSNDSISWVQLA-KLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLE 241 (363)
Q Consensus 164 ~l~~L~~L~L~~n~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~-~~~~~L~ 241 (363)
+..+++.|+|++|.|+. +. .+. .+.+|+.|++++|.++.+.. +..++.|++|++++|.++.+++.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie--~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IE--NLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccc--cc--chhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 34455666666665553 22 122 34455556666665555543 444555555555555555553333 2345555
Q ss_pred EEeccCCcCccCCc--cccCCCCCcEEECCCCCCC
Q 017986 242 VLKANNNRISFLPE--SIGNCTSLIEIDLSSNLLS 274 (363)
Q Consensus 242 ~L~l~~n~i~~~~~--~~~~~~~L~~L~L~~n~l~ 274 (363)
.|++++|.|..+.+ .+..+++|+.|++.+|++.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55555555543321 2334444444444444443
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.31 E-value=2.4e-12 Score=121.68 Aligned_cols=184 Identities=33% Similarity=0.457 Sum_probs=155.6
Q ss_pred HHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCc
Q 017986 115 SERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHL 194 (363)
Q Consensus 115 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 194 (363)
......++.+++.+|.+++++......-++|+.|++++|.+..+|..+..+++|+.|+++.|++.. ++. .....+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~-~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPK-LLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhh-hhhhhhhh
Confidence 344467899999999999999865322137999999999999998788999999999999999986 331 22378899
Q ss_pred CEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCC
Q 017986 195 TVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLS 274 (363)
Q Consensus 195 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~ 274 (363)
+.|++++|.+..+|........|+++.+++|.+...+..+..+.++..+.+.+|.+..++..+..+++++.|++++|.++
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence 99999999999999866677779999999997666777788899999999999998887778889999999999999999
Q ss_pred CCChhccCCCCCCEEECCCCCCCCCChh
Q 017986 275 ELPVTLENLHYLKALHLDNNALKSLPTT 302 (363)
Q Consensus 275 ~l~~~~~~~~~L~~L~L~~n~l~~~~~~ 302 (363)
.++. ++...+++.|++++|.+..+++.
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccc-ccccCccCEEeccCccccccchh
Confidence 9986 88889999999999988766543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.31 E-value=2.9e-13 Score=116.76 Aligned_cols=177 Identities=19% Similarity=0.217 Sum_probs=93.5
Q ss_pred CceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCC--CCh-------------------HhhcCCCCcCEEEcCC
Q 017986 143 PFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDS--ISW-------------------VQLAKLKHLTVLSISR 201 (363)
Q Consensus 143 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~--~~~-------------------~~~~~l~~L~~L~l~~ 201 (363)
++|+.+.++++.-..|-+....-|.|+++......++... .+. .....+..|+.+|+++
T Consensus 214 ~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~ 293 (490)
T KOG1259|consen 214 RNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSG 293 (490)
T ss_pred hhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccc
Confidence 4566666666654444332233456666665554443210 000 0111233455666666
Q ss_pred CcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhcc
Q 017986 202 NCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLE 281 (363)
Q Consensus 202 n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~ 281 (363)
|.|+.+.+++.-.+.++.|++++|++..+.. +..+++|+.|++++|.++.+..+-..+.++++|.|++|.+.++. .++
T Consensus 294 N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~ 371 (490)
T KOG1259|consen 294 NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLR 371 (490)
T ss_pred cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhH
Confidence 6666665555555666666666666655522 55566666666666666555444445555666666666555543 344
Q ss_pred CCCCCCEEECCCCCCCCCCh-hhhhCCCCCCEEEccCCccc
Q 017986 282 NLHYLKALHLDNNALKSLPT-TLFSKCVQLSTLELHNTEIT 321 (363)
Q Consensus 282 ~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~ 321 (363)
.+-+|..||+++|+|..+.. ...+++|.|..+.|.+|++.
T Consensus 372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 55556666666666554432 23455566666666666654
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=9.1e-13 Score=115.86 Aligned_cols=228 Identities=20% Similarity=0.253 Sum_probs=107.6
Q ss_pred CcccccccccccccccC----CCCChHHhhcccceeecccccCc----cCChhh------hhcCCceeEEEccCCcCc--
Q 017986 93 PITSRKTDRVRDMKMVP----VGKTSSERWKATGVIALAEHNLK----AIPDEV------WDCSPFIRVLDIRTNSIQ-- 156 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~----~~~~~~~~~~~l~~L~l~~n~i~----~i~~~~------~~~~~~L~~L~L~~n~i~-- 156 (363)
....++++.+.++.+.. +-...+.+.+.|+..++++-... .+|+.+ ...+|.|++|+||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 44455555565555433 11222334445555555543221 333211 122345666666666554
Q ss_pred cc---cccccCCCCCCEEEcCCCCCCCCCCCh-----------HhhcCCCCcCEEEcCCCcCCCCC-----ccccCCCCC
Q 017986 157 CV---PDQIDGLTGLKKLLLDANDLSNDSISW-----------VQLAKLKHLTVLSISRNCLNSLP-----GILGHLTAL 217 (363)
Q Consensus 157 ~i---~~~~~~l~~L~~L~L~~n~~~~~~~~~-----------~~~~~l~~L~~L~l~~n~l~~l~-----~~l~~l~~L 217 (363)
.+ ...+..+..|++|.|.+|.+....-.. .....-+.|+++.+.+|++..-+ ..+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 11 122344566666666666554311000 01122345666666666555322 334444556
Q ss_pred CEEEcccCcCCC-----cchhhcCCCCCCEEeccCCcCc-----cCCccccCCCCCcEEECCCCCCCC-----CChhc-c
Q 017986 218 QHLDVSNNKLTT-----LPTEIGLLSKLEVLKANNNRIS-----FLPESIGNCTSLIEIDLSSNLLSE-----LPVTL-E 281 (363)
Q Consensus 218 ~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~~~L~~L~L~~n~l~~-----l~~~~-~ 281 (363)
+.+.+..|.|.. +...+..+++|+.|+|+.|.++ .+...+..+++|+.|++++|.+.. +..++ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 666666665541 1234455666666666666555 112234555566666666665551 11122 2
Q ss_pred CCCCCCEEECCCCCCCCCCh----hhhhCCCCCCEEEccCCcc
Q 017986 282 NLHYLKALHLDNNALKSLPT----TLFSKCVQLSTLELHNTEI 320 (363)
Q Consensus 282 ~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~i 320 (363)
..|+|+.+.|.+|.|+.-.. ......|.|..|+|++|.+
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 34566666666666552211 1223345666666666666
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=1.7e-13 Score=120.34 Aligned_cols=223 Identities=22% Similarity=0.240 Sum_probs=165.5
Q ss_pred HHhhcccceeecccccCc----cCChhhhhcCCceeEEEccCCcCc----ccc-------ccccCCCCCCEEEcCCCCCC
Q 017986 115 SERWKATGVIALAEHNLK----AIPDEVWDCSPFIRVLDIRTNSIQ----CVP-------DQIDGLTGLKKLLLDANDLS 179 (363)
Q Consensus 115 ~~~~~~l~~L~l~~n~i~----~i~~~~~~~~~~L~~L~L~~n~i~----~i~-------~~~~~l~~L~~L~L~~n~~~ 179 (363)
......+++++++||.+. ..-.......++|+..++++-... .+| +.+-.+++|+.|+||.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 445678899999999886 222233455678999999864222 333 34456789999999999998
Q ss_pred CCCCCh--HhhcCCCCcCEEEcCCCcCCCCC--------------ccccCCCCCCEEEcccCcCCCc-----chhhcCCC
Q 017986 180 NDSISW--VQLAKLKHLTVLSISRNCLNSLP--------------GILGHLTALQHLDVSNNKLTTL-----PTEIGLLS 238 (363)
Q Consensus 180 ~~~~~~--~~~~~l~~L~~L~l~~n~l~~l~--------------~~l~~l~~L~~L~l~~n~i~~l-----~~~~~~~~ 238 (363)
...++. ..+.++..|++|.|.+|.+.... .-...-+.|+.+.+.+|++... ...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 755542 24677899999999999988322 1234456899999999988743 34567889
Q ss_pred CCCEEeccCCcCcc-----CCccccCCCCCcEEECCCCCCC-----CCChhccCCCCCCEEECCCCCCCCCChhhh----
Q 017986 239 KLEVLKANNNRISF-----LPESIGNCTSLIEIDLSSNLLS-----ELPVTLENLHYLKALHLDNNALKSLPTTLF---- 304 (363)
Q Consensus 239 ~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~L~~n~l~-----~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~---- 304 (363)
.|+.+.++.|+|.. +...+.+|++|+.|||..|-++ .+...+..+++|+.++++.|.+..-...+|
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 99999999998872 2246789999999999999988 334567888999999999999986554333
Q ss_pred -hCCCCCCEEEccCCccchhhhhc----ccCchHHHHH
Q 017986 305 -SKCVQLSTLELHNTEITMDALRQ----LEGWDDFDKR 337 (363)
Q Consensus 305 -~~l~~L~~L~L~~n~i~~~~~~~----l~~l~~l~~~ 337 (363)
...|.|++|.+.+|.|+.+.... ....|.|+.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kL 303 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKL 303 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHh
Confidence 34689999999999999876443 3445555553
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=4.9e-12 Score=109.28 Aligned_cols=196 Identities=23% Similarity=0.283 Sum_probs=144.2
Q ss_pred hcCCceeEEEccCC--cCc-------cccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCC---
Q 017986 140 DCSPFIRVLDIRTN--SIQ-------CVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSL--- 207 (363)
Q Consensus 140 ~~~~~L~~L~L~~n--~i~-------~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l--- 207 (363)
..+..|+.|..++. .+. .+|-.+..+.+|+.+.++.+.-.. +. .....-|.|+++......++..
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~--i~-~~~~~kptl~t~~v~~s~~~~~~~l 255 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN--IV-DIELLKPTLQTICVHNTTIQDVPSL 255 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh--ee-ceeecCchhheeeeecccccccccc
Confidence 34567888877653 222 223234456778888888765332 11 1122346677776655443311
Q ss_pred -C--------------------ccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEE
Q 017986 208 -P--------------------GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEI 266 (363)
Q Consensus 208 -~--------------------~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L 266 (363)
| .....+..|+++|+++|.|+.+.+++.-.+.++.|++++|.+..+.. +..+++|+.|
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~L 334 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLL 334 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEe
Confidence 1 11223467999999999999998889999999999999999998754 8889999999
Q ss_pred ECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccch-hhhhcccCchHHHHHHHHh
Q 017986 267 DLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITM-DALRQLEGWDDFDKRRRAK 341 (363)
Q Consensus 267 ~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~l~~~~~~~ 341 (363)
||++|.++.+...-..+-++++|.|+.|.|.++.. +..+-+|..||+++|+|.. +..+.++++|+|+-++...
T Consensus 335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 335 DLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred ecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 99999999887665678899999999999987753 5677899999999999965 5688999999999876653
No 35
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.08 E-value=3.5e-10 Score=79.39 Aligned_cols=71 Identities=34% Similarity=0.543 Sum_probs=67.2
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEe---cceeecCCcccccccccCCcEEEEeec
Q 017986 6 IKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIF---KGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~---~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
|+|+|||.++.+++++.++.|+.+||..|++.+++|++.||+.. .|+...|+..++.+.+..+..+.++|+
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmGs 74 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMGT 74 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEeC
Confidence 68999999999999999999999999999999999999999994 899999999999999999999998874
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.94 E-value=6.2e-11 Score=112.55 Aligned_cols=108 Identities=29% Similarity=0.382 Sum_probs=60.9
Q ss_pred HHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCc
Q 017986 115 SERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHL 194 (363)
Q Consensus 115 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 194 (363)
+..+..++.+++.+|.|..+... ...+++|++|++++|.|+.+. .+..++.|+.|++++|.+.. +. .+..++.|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~--~~--~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISD--IS--GLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcchh--cc--CCccchhh
Confidence 44556666666666666655542 234456666666666666553 34445556666666666653 21 23445666
Q ss_pred CEEEcCCCcCCCCCcc-ccCCCCCCEEEcccCcCC
Q 017986 195 TVLSISRNCLNSLPGI-LGHLTALQHLDVSNNKLT 228 (363)
Q Consensus 195 ~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~i~ 228 (363)
+.+++++|.+..+... ...+..++.+++.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 6666666666655432 344555666666666554
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.94 E-value=1.2e-10 Score=110.65 Aligned_cols=199 Identities=24% Similarity=0.340 Sum_probs=147.0
Q ss_pred HhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcC
Q 017986 116 ERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLT 195 (363)
Q Consensus 116 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 195 (363)
..+..++.+++..|.+..+-.. ...+.+|+.|++.+|+|..+...+..+++|++|++++|.|+. +. .+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~--~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LE--GLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheecccccccc--cc--chhhccchh
Confidence 4556667777888888763332 345578999999999999887557789999999999999986 22 467777899
Q ss_pred EEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchh-hcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCC
Q 017986 196 VLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLS 274 (363)
Q Consensus 196 ~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~ 274 (363)
.|++++|.+..+.. +..++.|+.+++++|.+..+... ...+..++.+.+.+|.+..+. .+..+..+..+++..|.+.
T Consensus 144 ~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 144 ELNLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred hheeccCcchhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccce
Confidence 99999999998876 55688999999999999988543 577889999999999887653 2334444555577777777
Q ss_pred CCChhccCCC--CCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchh
Q 017986 275 ELPVTLENLH--YLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 275 ~l~~~~~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
.+-. +..+. +|+.+++++|.+..++ ..+..+..+..+++.+|.+...
T Consensus 222 ~~~~-l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 222 KLEG-LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred eccC-cccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccc
Confidence 5531 12222 3788888888887764 2246667788888888877643
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=7.7e-10 Score=75.01 Aligned_cols=60 Identities=40% Similarity=0.610 Sum_probs=51.5
Q ss_pred CCCcEEECCCCCCCCCC-hhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCcc
Q 017986 261 TSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEI 320 (363)
Q Consensus 261 ~~L~~L~L~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 320 (363)
++|++|++++|.++.+| ..|..+++|++|++++|.++.+++.+|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46888888888888886 4678889999999999999988888899999999999999875
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.3e-09 Score=72.64 Aligned_cols=60 Identities=27% Similarity=0.506 Sum_probs=43.7
Q ss_pred cccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCCCEEEcCCCCC
Q 017986 119 KATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGLKKLLLDANDL 178 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~~n~~ 178 (363)
+.|++|++++|.++.+|...|..+++|++|++++|+++.++ ..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35677777777777777777777777777777777777664 4567777777777777653
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.82 E-value=1.7e-10 Score=88.56 Aligned_cols=139 Identities=22% Similarity=0.284 Sum_probs=110.6
Q ss_pred CcCEEEcCCCcCCCCCccc---cCCCCCCEEEcccCcCCCcchhh-cCCCCCCEEeccCCcCccCCccccCCCCCcEEEC
Q 017986 193 HLTVLSISRNCLNSLPGIL---GHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISFLPESIGNCTSLIEIDL 268 (363)
Q Consensus 193 ~L~~L~l~~n~l~~l~~~l---~~l~~L~~L~l~~n~i~~l~~~~-~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L 268 (363)
.+..++|+.|++..++... .....|+.+++++|.+..+|+.| ...+.++.|++.+|.+.++|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4667888888888776544 44456777899999999888877 4556889999999999999988999999999999
Q ss_pred CCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCch
Q 017986 269 SSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWD 332 (363)
Q Consensus 269 ~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~ 332 (363)
+.|.+...|..+..+.++..|+..+|.+..|+.++|.. ...-..++.++++.++....++.|.
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~~klqa~k 170 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDETKKKLQALK 170 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCcccccCcccccccC
Confidence 99999988888877888999999999999998776542 2333456678889988877776664
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.80 E-value=1e-10 Score=111.89 Aligned_cols=128 Identities=29% Similarity=0.348 Sum_probs=101.5
Q ss_pred CcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEECCCC
Q 017986 193 HLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDLSSN 271 (363)
Q Consensus 193 ~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L~~n 271 (363)
.|...++++|.+..+..++.-++.++.|++++|++..+. .+..++.|++|++++|.+..+|.- ...| +|+.|.+.+|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc
Confidence 477788888888888888888888999999999988774 778889999999999998888753 3344 4899999999
Q ss_pred CCCCCChhccCCCCCCEEECCCCCCCCCCh-hhhhCCCCCCEEEccCCccchh
Q 017986 272 LLSELPVTLENLHYLKALHLDNNALKSLPT-TLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 272 ~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
.++++- .+.++.+|+.||++.|-|..... ..+..+..|+.|+|.||++-|.
T Consensus 243 ~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 243 ALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred HHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 888775 56688889999999997764432 2345667888999999998775
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=2.2e-09 Score=92.95 Aligned_cols=200 Identities=16% Similarity=0.149 Sum_probs=82.8
Q ss_pred ccccccccccccCCCCChH--HhhcccceeecccccCccCC--hhhhhcCCceeEEEccCCcCccccccc-cCCCCCCEE
Q 017986 97 RKTDRVRDMKMVPVGKTSS--ERWKATGVIALAEHNLKAIP--DEVWDCSPFIRVLDIRTNSIQCVPDQI-DGLTGLKKL 171 (363)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~--~~~~~l~~L~l~~n~i~~i~--~~~~~~~~~L~~L~L~~n~i~~i~~~~-~~l~~L~~L 171 (363)
++.+.+.++.+..++.... .....++.+++.+|.|..=. ..+...+|.|++|+|+.|.+...-... ....+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 3444445555444442211 23344455566665554221 123344555666666655554221111 123455555
Q ss_pred EcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC---ccccCC-CCCCEEEcccCcCC---CcchhhcCCCCCCEEe
Q 017986 172 LLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP---GILGHL-TALQHLDVSNNKLT---TLPTEIGLLSKLEVLK 244 (363)
Q Consensus 172 ~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~---~~l~~l-~~L~~L~l~~n~i~---~l~~~~~~~~~L~~L~ 244 (363)
.|.+..+.+.. ....+..+|.++.|.++.|.+..+- .-.... +.++++.+..|... ....-....+++..+.
T Consensus 127 VLNgT~L~w~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 127 VLNGTGLSWTQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEcCCCCChhh-hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 55555444321 1123444555555555555433221 111111 13344444444221 0101112233444444
Q ss_pred ccCCcCccCC--ccccCCCCCcEEECCCCCCCCCC--hhccCCCCCCEEECCCCCCC
Q 017986 245 ANNNRISFLP--ESIGNCTSLIEIDLSSNLLSELP--VTLENLHYLKALHLDNNALK 297 (363)
Q Consensus 245 l~~n~i~~~~--~~~~~~~~L~~L~L~~n~l~~l~--~~~~~~~~L~~L~L~~n~l~ 297 (363)
+..|.+.... ..+..++.+..|+|+.++|.++. .++..++.|.-|.++++.+.
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 4444333221 12333344445555555555442 23444555555555555443
No 43
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.71 E-value=5e-08 Score=68.23 Aligned_cols=70 Identities=44% Similarity=0.690 Sum_probs=65.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 6 IKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+|+|||.++..++.+.++.|+.+||..+++.+|+|+..|++.+.|..+.|+..++...+.++..+.+.+
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 6899999999999999999999999999999999999999999999999998889999999998887754
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.6e-08 Score=103.20 Aligned_cols=212 Identities=27% Similarity=0.374 Sum_probs=123.1
Q ss_pred cccceeeccccc--CccCChhhhhcCCceeEEEccCC-cCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcC
Q 017986 119 KATGVIALAEHN--LKAIPDEVWDCSPFIRVLDIRTN-SIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLT 195 (363)
Q Consensus 119 ~~l~~L~l~~n~--i~~i~~~~~~~~~~L~~L~L~~n-~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 195 (363)
+.+++|-+.+|. +..++..+|..+|.|++|||++| .+..+|..++.+-+|++|+++++.+.. ++ ..+.++..|.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP-~~l~~Lk~L~ 621 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH--LP-SGLGNLKKLI 621 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc--cc-hHHHHHHhhh
Confidence 357777777775 77888888888888888888866 556788888888888888888888774 33 4577778888
Q ss_pred EEEcCCCc-CCCCCccccCCCCCCEEEcccCcCCC---cchhhcCCCCCCEEeccCC-----------------------
Q 017986 196 VLSISRNC-LNSLPGILGHLTALQHLDVSNNKLTT---LPTEIGLLSKLEVLKANNN----------------------- 248 (363)
Q Consensus 196 ~L~l~~n~-l~~l~~~l~~l~~L~~L~l~~n~i~~---l~~~~~~~~~L~~L~l~~n----------------------- 248 (363)
+|++..+. +..++.....+.+|++|.+....... .-..+..+..|+.+.....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence 88887774 44455555567788888776554221 1122233333333333222
Q ss_pred ---cCccCCccccCCCCCcEEECCCCCCCCCCh-h-----ccC-CCCCCEEECCCCC-CCCCChhhhhCCCCCCEEEccC
Q 017986 249 ---RISFLPESIGNCTSLIEIDLSSNLLSELPV-T-----LEN-LHYLKALHLDNNA-LKSLPTTLFSKCVQLSTLELHN 317 (363)
Q Consensus 249 ---~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~-~-----~~~-~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 317 (363)
.....+..+..+.+|+.|.+.++.+.+... . ... ++++..+...++. ........|. ++|+.|.+.+
T Consensus 702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~--~~L~~l~l~~ 779 (889)
T KOG4658|consen 702 EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFA--PHLTSLSLVS 779 (889)
T ss_pred cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhcc--CcccEEEEec
Confidence 112222334556677777777766653211 0 011 2233333333332 2233233233 7788888887
Q ss_pred CccchhhhhcccCchHHH
Q 017986 318 TEITMDALRQLEGWDDFD 335 (363)
Q Consensus 318 n~i~~~~~~~l~~l~~l~ 335 (363)
+..-.+.+.....+..+.
T Consensus 780 ~~~~e~~i~~~k~~~~l~ 797 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLELK 797 (889)
T ss_pred ccccccCCCHHHHhhhcc
Confidence 776665544444444333
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=9.5e-08 Score=95.16 Aligned_cols=106 Identities=26% Similarity=0.458 Sum_probs=76.7
Q ss_pred CCEEEcccCcCC-CcchhhcCCCCCCEEeccCCcCc-cCCccccCCCCCcEEECCCCCCC-CCChhccCCCCCCEEECCC
Q 017986 217 LQHLDVSNNKLT-TLPTEIGLLSKLEVLKANNNRIS-FLPESIGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDN 293 (363)
Q Consensus 217 L~~L~l~~n~i~-~l~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~L~~n~l~-~l~~~~~~~~~L~~L~L~~ 293 (363)
++.|++++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 567777777776 45777777888888888888876 66667777888888888888877 5677777888888888888
Q ss_pred CCCC-CCChhhhhC-CCCCCEEEccCCccchh
Q 017986 294 NALK-SLPTTLFSK-CVQLSTLELHNTEITMD 323 (363)
Q Consensus 294 n~l~-~~~~~~~~~-l~~L~~L~L~~n~i~~~ 323 (363)
|.++ .+|.. +.. ..++..+++.+|...|.
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCCccccC
Confidence 8777 44443 333 34566777777765443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=9.7e-09 Score=89.01 Aligned_cols=201 Identities=20% Similarity=0.208 Sum_probs=142.9
Q ss_pred cccceeecccccCccCCh--hhhhcCCceeEEEccCCcCcc---ccccccCCCCCCEEEcCCCCCCCCCCChHhh-cCCC
Q 017986 119 KATGVIALAEHNLKAIPD--EVWDCSPFIRVLDIRTNSIQC---VPDQIDGLTGLKKLLLDANDLSNDSISWVQL-AKLK 192 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~--~~~~~~~~L~~L~L~~n~i~~---i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~~l~ 192 (363)
..++.+.+.++.|....+ .+...++.++.+||.+|.|+. +...+.++|.|+.|+++.|.+.. .+. .+ ....
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~--~lp~p~~ 121 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIK--SLPLPLK 121 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccc--cCccccc
Confidence 355567788888775543 334556789999999999883 44456789999999999999875 222 22 4567
Q ss_pred CcCEEEcCCCcCC--CCCccccCCCCCCEEEcccCcCCCc--chh-h-cCCCCCCEEeccCCcCc---cCCccccCCCCC
Q 017986 193 HLTVLSISRNCLN--SLPGILGHLTALQHLDVSNNKLTTL--PTE-I-GLLSKLEVLKANNNRIS---FLPESIGNCTSL 263 (363)
Q Consensus 193 ~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~i~~l--~~~-~-~~~~~L~~L~l~~n~i~---~~~~~~~~~~~L 263 (363)
+|++|.+.+..+. .....+..++.+++|+++.|....+ .+. . ..-+.+.+|....|... .+..-..-++++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 8999999888766 4556678888999999999855422 111 1 22335666666666433 111112445788
Q ss_pred cEEECCCCCCCCCC--hhccCCCCCCEEECCCCCCCCCCh-hhhhCCCCCCEEEccCCccch
Q 017986 264 IEIDLSSNLLSELP--VTLENLHYLKALHLDNNALKSLPT-TLFSKCVQLSTLELHNTEITM 322 (363)
Q Consensus 264 ~~L~L~~n~l~~l~--~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~ 322 (363)
..+.+..|++.+.. ..+..++.+..|+|+.|+|.++.. +.+..+++|+.|.+.+|++..
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 88999999988663 345677888899999999987653 668899999999999999753
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=6.1e-09 Score=100.05 Aligned_cols=193 Identities=25% Similarity=0.268 Sum_probs=136.1
Q ss_pred hhcCCceeEEEccCCcCc-cc-cccccCCCCCCEEEcCCCCCCCCCCChHhhcCC-CCcCEEEcCCCcCCCCCcccc---
Q 017986 139 WDCSPFIRVLDIRTNSIQ-CV-PDQIDGLTGLKKLLLDANDLSNDSISWVQLAKL-KHLTVLSISRNCLNSLPGILG--- 212 (363)
Q Consensus 139 ~~~~~~L~~L~L~~n~i~-~i-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~l~~~l~--- 212 (363)
+..+++++.|.+-...-. .. |-.+..+.+|++|.+.++++... ..+..+ ..|++|.. .|.+..+...+.
T Consensus 80 ~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~----~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascg 154 (1096)
T KOG1859|consen 80 LDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA----KGLQELRHQLEKLIC-HNSLDALRHVFASCG 154 (1096)
T ss_pred HHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh----hhhHHHHHhhhhhhh-hccHHHHHHHHHHhc
Confidence 334455666665443221 11 44567789999999999998741 122222 23454433 344443222111
Q ss_pred -------CCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCC
Q 017986 213 -------HLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHY 285 (363)
Q Consensus 213 -------~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~ 285 (363)
.+..|.+.++++|.+..+..++.-++.++.|+|++|+++.+. .+..|+.|++|||++|.+..+|..-..-.+
T Consensus 155 gd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 155 GDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK 233 (1096)
T ss_pred cccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh
Confidence 123678889999999988888999999999999999999874 788999999999999999998854333346
Q ss_pred CCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh-hhcccCchHHHHHHH
Q 017986 286 LKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA-LRQLEGWDDFDKRRR 339 (363)
Q Consensus 286 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~l~~~~~ 339 (363)
|+.|.+++|.++.+.. +.++.+|+.||+++|-|.+.. +..+..+..|..+..
T Consensus 234 L~~L~lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred heeeeecccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 9999999999998753 578899999999999998763 444555556665543
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=2.2e-07 Score=92.61 Aligned_cols=92 Identities=23% Similarity=0.380 Sum_probs=81.9
Q ss_pred CCCEEeccCCcCc-cCCccccCCCCCcEEECCCCCCC-CCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEcc
Q 017986 239 KLEVLKANNNRIS-FLPESIGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELH 316 (363)
Q Consensus 239 ~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~L~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 316 (363)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.++...+..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778999999988 77788999999999999999998 778889999999999999999996656668999999999999
Q ss_pred CCccchhhhhcccC
Q 017986 317 NTEITMDALRQLEG 330 (363)
Q Consensus 317 ~n~i~~~~~~~l~~ 330 (363)
+|.+++..+..+..
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99999988777654
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.47 E-value=2.6e-08 Score=76.78 Aligned_cols=131 Identities=17% Similarity=0.237 Sum_probs=101.4
Q ss_pred CCCEEEcccCcCCCcchhh---cCCCCCCEEeccCCcCccCCccc-cCCCCCcEEECCCCCCCCCChhccCCCCCCEEEC
Q 017986 216 ALQHLDVSNNKLTTLPTEI---GLLSKLEVLKANNNRISFLPESI-GNCTSLIEIDLSSNLLSELPVTLENLHYLKALHL 291 (363)
Q Consensus 216 ~L~~L~l~~n~i~~l~~~~---~~~~~L~~L~l~~n~i~~~~~~~-~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L 291 (363)
.+..++++.|.+-.+++.. .....|+.+++++|.+..+|+.+ ..++.++.++|++|.|+++|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4667888899877666554 45567888899999999998776 4446889999999999999999999999999999
Q ss_pred CCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhc-ccCchHHHHHHHHhhccccc
Q 017986 292 DNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQ-LEGWDDFDKRRRAKHQKQLD 347 (363)
Q Consensus 292 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~l~~~~~~~~~~~~~ 347 (363)
+.|.+...|.-++. +.++-.|+..+|.+-.....- ..+.+-+..+++-.+.+...
T Consensus 108 ~~N~l~~~p~vi~~-L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAP-LIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred ccCccccchHHHHH-HHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCc
Confidence 99999988766555 889999999999876554443 36677777765544444333
No 50
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=98.47 E-value=5e-07 Score=63.62 Aligned_cols=70 Identities=34% Similarity=0.462 Sum_probs=64.9
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+++|| ..++.+.+.+.++.|+.++|+.+++.+|+|+..|++.+.|..+.|+..++...+.++..+.+.-
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 578999 8899999999999999999999999999999999999999999999999999999998876643
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.45 E-value=4.5e-07 Score=77.91 Aligned_cols=247 Identities=17% Similarity=0.122 Sum_probs=162.9
Q ss_pred hHHhhcccceeecccccCccCCh----hhhhcCCceeEEEccCCcCc----ccc-------ccccCCCCCCEEEcCCCCC
Q 017986 114 SSERWKATGVIALAEHNLKAIPD----EVWDCSPFIRVLDIRTNSIQ----CVP-------DQIDGLTGLKKLLLDANDL 178 (363)
Q Consensus 114 ~~~~~~~l~~L~l~~n~i~~i~~----~~~~~~~~L~~L~L~~n~i~----~i~-------~~~~~l~~L~~L~L~~n~~ 178 (363)
.+..+..++.++++||.|..=.. .....-.+|+..+++.-... .++ +.+-+||+|+.++|+.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34456778889999998862111 11233467888888764332 222 3456889999999999998
Q ss_pred CCCCCCh--HhhcCCCCcCEEEcCCCcCCCCCc-----c---------ccCCCCCCEEEcccCcCCCcch-----hhcCC
Q 017986 179 SNDSISW--VQLAKLKHLTVLSISRNCLNSLPG-----I---------LGHLTALQHLDVSNNKLTTLPT-----EIGLL 237 (363)
Q Consensus 179 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~l~~-----~---------l~~l~~L~~L~l~~n~i~~l~~-----~~~~~ 237 (363)
....++. ..++.-..|.+|.+++|.+..+.+ + ...-+.|+.+.+.+|++...+. .+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 7644432 246677789999999998884431 1 2234679999999998886543 23444
Q ss_pred CCCCEEeccCCcCcc--CC----ccccCCCCCcEEECCCCCCCCC-----ChhccCCCCCCEEECCCCCCCCCCh-hh--
Q 017986 238 SKLEVLKANNNRISF--LP----ESIGNCTSLIEIDLSSNLLSEL-----PVTLENLHYLKALHLDNNALKSLPT-TL-- 303 (363)
Q Consensus 238 ~~L~~L~l~~n~i~~--~~----~~~~~~~~L~~L~L~~n~l~~l-----~~~~~~~~~L~~L~L~~n~l~~~~~-~~-- 303 (363)
..|+.+.+..|+|.. +. ..+..+.+|+.||++.|.++.. ..++...+.|+.|.+..|.++.-.. .+
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 689999999998871 11 2356778999999999988732 3445667789999999998874443 22
Q ss_pred -hh--CCCCCCEEEccCCccchhhhhc-------ccCchHHHHHHHH-hhc---------cccceeeccCCCCCCcC
Q 017986 304 -FS--KCVQLSTLELHNTEITMDALRQ-------LEGWDDFDKRRRA-KHQ---------KQLDFRVMGSTEFDEGA 360 (363)
Q Consensus 304 -~~--~l~~L~~L~L~~n~i~~~~~~~-------l~~l~~l~~~~~~-~~~---------~~~~~~~~~~~~~~~~~ 360 (363)
|. ..|+|+.|...+|.+.++.+.. -..+|-|..+.+- +-. -+--+.+.++++|+++-
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d~~d~~~~if~~~ev~e~~e~d 341 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADFGDYYEDIFEVVEVVEKQEGD 341 (388)
T ss_pred HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHHHHHHHHHHhhhhccccccccc
Confidence 22 2488899999999887765443 2345555555332 100 11123556777777664
No 52
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=98.43 E-value=9.2e-07 Score=61.74 Aligned_cols=69 Identities=23% Similarity=0.329 Sum_probs=63.2
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 5 EIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 5 ~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
+|+++|| ..++++.+++.++.|+.+||..+++..+++++.|++.+.|..+.|+..++...+.++..+.+
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l 70 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLEL 70 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEE
Confidence 5789999 67899999999999999999999999999999999999999999998899999988887655
No 53
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.41 E-value=4.4e-07 Score=92.82 Aligned_cols=178 Identities=28% Similarity=0.345 Sum_probs=112.1
Q ss_pred CceeEEEccCCcCccccccccCCCCCCEEEcCCCC--CCCCCCChHhhcCCCCcCEEEcCCC-cCCCCCccccCCCCCCE
Q 017986 143 PFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDAND--LSNDSISWVQLAKLKHLTVLSISRN-CLNSLPGILGHLTALQH 219 (363)
Q Consensus 143 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~--~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~ 219 (363)
...+.+.+-+|.+..++... .++.|++|-+.+|. +. .++...|..+|.|++||+++| .+..+|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~--~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLL--EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhh--hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 35777777777777665543 34467777777775 33 244445777888888888877 56778877788888888
Q ss_pred EEcccCcCCCcchhhcCCCCCCEEeccCCcCc-cCCccccCCCCCcEEECCCCCCC---CCChhccCCCCCCEEECCCC-
Q 017986 220 LDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS-FLPESIGNCTSLIEIDLSSNLLS---ELPVTLENLHYLKALHLDNN- 294 (363)
Q Consensus 220 L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~L~~n~l~---~l~~~~~~~~~L~~L~L~~n- 294 (363)
|+++++.+..+|..++++..|.+|++..+... .++.....+.+|++|.+...... .....+..+.+|+.+.....
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 88888888888888888888888888776543 33344455777888777654422 11112223333333322221
Q ss_pred -------------------------CCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 295 -------------------------ALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 295 -------------------------~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
..... ...+..+.+|+.|.+.++.++...
T Consensus 680 ~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~-~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRSLLQSLSIEGCSKRTL-ISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred hHhHhhhhhhHHHHHHhHhhhhccccccee-ecccccccCcceEEEEcCCCchhh
Confidence 11111 123567788999999998886543
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.4e-08 Score=88.12 Aligned_cols=171 Identities=21% Similarity=0.274 Sum_probs=112.3
Q ss_pred ceeEEEccCCcCc--cccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCC-cCCCC--CccccCCCCCC
Q 017986 144 FIRVLDIRTNSIQ--CVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRN-CLNSL--PGILGHLTALQ 218 (363)
Q Consensus 144 ~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l--~~~l~~l~~L~ 218 (363)
.|+.|||++..|+ .+...+..|.+|+.|.+.++++.+. + ...++.-.+|+.|+++.+ .+++- .-.+++++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I-~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-I-VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-H-HHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 4888888887777 3333456788888888888887762 2 235666778888888877 56632 34567778888
Q ss_pred EEEcccCcCC--Ccchhhc-CCCCCCEEeccCCcC----ccCCccccCCCCCcEEECCCCC-CC-CCChhccCCCCCCEE
Q 017986 219 HLDVSNNKLT--TLPTEIG-LLSKLEVLKANNNRI----SFLPESIGNCTSLIEIDLSSNL-LS-ELPVTLENLHYLKAL 289 (363)
Q Consensus 219 ~L~l~~n~i~--~l~~~~~-~~~~L~~L~l~~n~i----~~~~~~~~~~~~L~~L~L~~n~-l~-~l~~~~~~~~~L~~L 289 (363)
.|+++-|... .+...+. --..|+.|+++++.- ..+..-...|++|..|||+.|. ++ +....+..++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 8888888654 1112221 224677788877642 1332234678888888888775 33 333456678888888
Q ss_pred ECCCCCCCCCChh---hhhCCCCCCEEEccCC
Q 017986 290 HLDNNALKSLPTT---LFSKCVQLSTLELHNT 318 (363)
Q Consensus 290 ~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n 318 (363)
.++.|. .|++. .+...|.|.+|+..++
T Consensus 344 SlsRCY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence 888885 23332 2466788888888776
No 55
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=98.30 E-value=2.2e-06 Score=59.94 Aligned_cols=69 Identities=32% Similarity=0.470 Sum_probs=63.0
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
|++.|| ..++..++.+.++.++.++|..+++.+|+|+..|++.+.|..+.|...++...+.++..+.++
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 689999 557799999999999999999999999999999999999999999999999999998887654
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.3e-08 Score=88.36 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=15.8
Q ss_pred hcCCceeEEEccCCcCc-cccccccCCCCCCEEEcCCC
Q 017986 140 DCSPFIRVLDIRTNSIQ-CVPDQIDGLTGLKKLLLDAN 176 (363)
Q Consensus 140 ~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~L~~n 176 (363)
+.+.+|+.|.|.++++. .+...+.+-.+|+.|+++++
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 33444444444444444 22223333444444444443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.29 E-value=9.9e-07 Score=72.61 Aligned_cols=123 Identities=25% Similarity=0.351 Sum_probs=77.5
Q ss_pred CCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhh-cCCCCCCEEecc
Q 017986 168 LKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKAN 246 (363)
Q Consensus 168 L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~-~~~~~L~~L~l~ 246 (363)
-+.+++.+.++.. +.. .-.-..+...+||++|.+..++. +..++.|.+|.+++|.|+.+.+.+ ..+++|+.|.+.
T Consensus 21 e~e~~LR~lkip~--ien-lg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPV--IEN-LGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccc--hhh-ccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 4555666655542 111 00113356677888887776654 567777888888888888775544 445667888888
Q ss_pred CCcCccCCc--cccCCCCCcEEECCCCCCCCCC----hhccCCCCCCEEECCCC
Q 017986 247 NNRISFLPE--SIGNCTSLIEIDLSSNLLSELP----VTLENLHYLKALHLDNN 294 (363)
Q Consensus 247 ~n~i~~~~~--~~~~~~~L~~L~L~~n~l~~l~----~~~~~~~~L~~L~L~~n 294 (363)
+|.|..+.+ .+..|+.|++|.+-+|++..-. ..+..+|+|+.||+.+-
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 877775543 3566777777777777766443 12456677777776654
No 58
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=98.25 E-value=4.6e-06 Score=59.22 Aligned_cols=70 Identities=31% Similarity=0.467 Sum_probs=63.9
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCC--CCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNV--LPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~--~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+++|| +.++.+.+++.++.|+.++|..+.+.+|+ ++..|++.+.|..+.|+..++...+.++..+.+.-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~ 73 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMV 73 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEE
Confidence 578999 88889999999999999999999999999 99999999999999999999999999988866654
No 59
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=98.25 E-value=2.7e-06 Score=58.93 Aligned_cols=67 Identities=25% Similarity=0.404 Sum_probs=60.6
Q ss_pred EEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 8 ITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 8 ~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
++|| ..|++.++.+.+..|+.++|..+++..|+|+..|++.+.|..+.|+..+....+.++..+.++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 3677 678899999999999999999999999999999999999999999999999988888876654
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=3.7e-07 Score=78.39 Aligned_cols=185 Identities=20% Similarity=0.258 Sum_probs=129.0
Q ss_pred CCceeEEEccCCcCc-----cccccccCCCCCCEEEcCCCCCCCC--C------CChHhhcCCCCcCEEEcCCCcCC-CC
Q 017986 142 SPFIRVLDIRTNSIQ-----CVPDQIDGLTGLKKLLLDANDLSND--S------ISWVQLAKLKHLTVLSISRNCLN-SL 207 (363)
Q Consensus 142 ~~~L~~L~L~~n~i~-----~i~~~~~~l~~L~~L~L~~n~~~~~--~------~~~~~~~~l~~L~~L~l~~n~l~-~l 207 (363)
+..++.++|++|.|. .+...+.+-.+|+..+++.-..... . +-..++.+||.|+.+++|+|.+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 567999999999987 3445566778888888876433210 0 00135778999999999999877 33
Q ss_pred C----ccccCCCCCCEEEcccCcCCCcc-----hh---------hcCCCCCCEEeccCCcCccCCcc-----ccCCCCCc
Q 017986 208 P----GILGHLTALQHLDVSNNKLTTLP-----TE---------IGLLSKLEVLKANNNRISFLPES-----IGNCTSLI 264 (363)
Q Consensus 208 ~----~~l~~l~~L~~L~l~~n~i~~l~-----~~---------~~~~~~L~~L~l~~n~i~~~~~~-----~~~~~~L~ 264 (363)
| +.+++.+.|.+|.+++|.+..+. .+ ...-|.|+.+....|.+...+.. +..-.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 3 45677788999999999877432 11 23456788888888888755421 22235788
Q ss_pred EEECCCCCCCCC------ChhccCCCCCCEEECCCCCCCCCC----hhhhhCCCCCCEEEccCCccchhhhh
Q 017986 265 EIDLSSNLLSEL------PVTLENLHYLKALHLDNNALKSLP----TTLFSKCVQLSTLELHNTEITMDALR 326 (363)
Q Consensus 265 ~L~L~~n~l~~l------~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~ 326 (363)
.+.+..|.|..= -..+..+.+|+.||+..|-++... ..++...+.|+.|.+.+|-++..+..
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 888888888721 123456788999999999877333 34456667788899999988877644
No 61
>PTZ00044 ubiquitin; Provisional
Probab=98.24 E-value=3.5e-06 Score=59.66 Aligned_cols=69 Identities=23% Similarity=0.423 Sum_probs=63.7
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
|++.|| ..++.+.+.+.+..|+.++|..+++.+|+|+..|++.+.|..+.|+..++...+.++..+.+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMV 70 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEE
Confidence 578999 788899999999999999999999999999999999999999999999999999988886664
No 62
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=98.24 E-value=5e-06 Score=58.85 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=64.1
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+++|| ..++.+.+.+.++.++.++|..+++.+|+|+..+++.+.|..+.|+..++...+.++..+.+.-
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 578999 7789999999999999999999999999999999999999999999999999999998876654
No 63
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.9e-06 Score=79.11 Aligned_cols=75 Identities=32% Similarity=0.485 Sum_probs=71.6
Q ss_pred cEEEEEEeCCeEEEEE-eCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccCc
Q 017986 5 EIKITVKFCGRPIPIT-LSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGV 79 (363)
Q Consensus 5 ~~~~~v~~~~~~~~i~-~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~ 79 (363)
+..|.|||+++.+++. +..+.+...||+++..+||++|..||+.++|+...|+..+..+.++++.++.+.|+.+-
T Consensus 3 ~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~ 78 (473)
T KOG1872|consen 3 SDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEA 78 (473)
T ss_pred cceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccccc
Confidence 4579999999999999 99999999999999999999999999999999999999999999999999999999875
No 64
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=98.23 E-value=4.3e-06 Score=58.83 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=61.8
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 6 IKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
|++.||-. ++..+.+.+..|+.++|+.+++.+|+|+..|++.+.|+.+.|+..++...+.++..+.+.
T Consensus 1 mqi~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 1 MQLFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVA 68 (74)
T ss_pred CEEEEECC-CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 47888864 688899999999999999999999999999999999999999999999999998887664
No 65
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=98.19 E-value=5.9e-06 Score=58.68 Aligned_cols=71 Identities=24% Similarity=0.359 Sum_probs=63.7
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 5 EIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 5 ~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
+++++|| ..++..++++.++.|+.++|..+++..++++..|++.+.|..+.|. .++...+.++..+.+.-.
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence 4789999 6688999999999999999999999999999999999999999988 899999999988776544
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.6e-06 Score=54.00 Aligned_cols=36 Identities=44% Similarity=0.692 Sum_probs=14.5
Q ss_pred CcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCC
Q 017986 263 LIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKS 298 (363)
Q Consensus 263 L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~ 298 (363)
|++|++++|+|+++|..++.+++|+.|++++|++++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 444444444444444334444444444444444443
No 67
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=2.5e-06 Score=54.48 Aligned_cols=66 Identities=29% Similarity=0.474 Sum_probs=58.6
Q ss_pred EEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEE
Q 017986 7 KITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLM 72 (363)
Q Consensus 7 ~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~ 72 (363)
.++|| ..+|.++|+..+.++++..|+.+++-.|+||..|++.+.|+++.|+-..+...+..|+.+.
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlH 68 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLH 68 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEe
Confidence 57888 8899999999999999999999999999999999999999999988777777677666544
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.18 E-value=2.3e-06 Score=70.50 Aligned_cols=101 Identities=23% Similarity=0.306 Sum_probs=48.9
Q ss_pred cceeecccccCccCChhhhhcCCceeEEEccCCcCccccccc-cCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEc
Q 017986 121 TGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQI-DGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSI 199 (363)
Q Consensus 121 l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 199 (363)
...++|++|++..++. |..++.|.+|.+.+|+|+.|.+.+ ..+++|+.|.+.+|.+.... +-..+..||.|++|.+
T Consensus 44 ~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~-dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG-DLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh-hcchhccCCccceeee
Confidence 3455566665554433 444555666666666666553332 22445555555555554311 1123445555555555
Q ss_pred CCCcCCCCC----ccccCCCCCCEEEccc
Q 017986 200 SRNCLNSLP----GILGHLTALQHLDVSN 224 (363)
Q Consensus 200 ~~n~l~~l~----~~l~~l~~L~~L~l~~ 224 (363)
-+|.++... ..+..+++|+.||+.+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 555554322 2233444555555443
No 69
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=98.14 E-value=7.9e-06 Score=57.82 Aligned_cols=70 Identities=29% Similarity=0.459 Sum_probs=63.4
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+|+|| ..++.+.+.+.+..++.++|..+++.+++|+..|++.+.|..+.|...+....+.++..+.+.-
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 578999 6788999999999999999999999999999999999999999999999999998888866543
No 70
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=98.13 E-value=1.2e-05 Score=60.18 Aligned_cols=71 Identities=23% Similarity=0.377 Sum_probs=65.5
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
..|+++|| ..++.+.+.+.+..++.++|..|++..|+|+..|++.+.|..+.|+..++...+.++..+.+.
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~ 97 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLV 97 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 36899999 788899999999999999999999999999999999999999999999999999988886654
No 71
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=98.12 E-value=9.5e-06 Score=57.52 Aligned_cols=71 Identities=27% Similarity=0.316 Sum_probs=62.6
Q ss_pred EEEEEE-eCCeE-EEEE-eCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 6 IKITVK-FCGRP-IPIT-LSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 6 ~~~~v~-~~~~~-~~i~-~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
|+++|| ..++. +.++ +.+..|+.++|..+++.+|+|+..|++.+.|+.+.|+..++...+.++..+.+.-.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~ 74 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVR 74 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 578999 55665 6885 78999999999999999999999999999999999999999999999998776543
No 72
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=2.4e-06 Score=85.31 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=48.7
Q ss_pred CCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCC--CCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEE
Q 017986 166 TGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLN--SLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVL 243 (363)
Q Consensus 166 ~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L 243 (363)
.+|++|++++........+...-.-+|+|+.|.+++-.+. .+.....++++|..||++++.++.+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 3455555555433211111112233555555555554332 2223334455555555555555554 444555555555
Q ss_pred eccCCcCccCC--ccccCCCCCcEEECCCCC
Q 017986 244 KANNNRISFLP--ESIGNCTSLIEIDLSSNL 272 (363)
Q Consensus 244 ~l~~n~i~~~~--~~~~~~~~L~~L~L~~n~ 272 (363)
.+.+-.+.... ..+.++++|+.||++...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 55544443221 123445555555555443
No 73
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.07 E-value=1.1e-05 Score=56.74 Aligned_cols=67 Identities=25% Similarity=0.310 Sum_probs=61.3
Q ss_pred EEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 8 ITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 8 ~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
+.|| +.+++..+.+.+..|+.++|..+++..|+|+..|++.+.|+.+.|+..++...+.++..+.+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMN 68 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 4678 888899999999999999999999999999999999999999999999999999988886654
No 74
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=98.06 E-value=1.2e-05 Score=55.90 Aligned_cols=67 Identities=25% Similarity=0.449 Sum_probs=61.7
Q ss_pred EEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 8 ITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 8 ~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
+.|| ..++.+++.+.+..++.++|..+++.+|+|+..|++.+.|..+.|+..++...+.+++.+.+.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAV 68 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 3678 788899999999999999999999999999999999999999999999999999999887654
No 75
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.04 E-value=1.3e-05 Score=57.32 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=62.3
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEE--EecceeecCCcccccccccCCcEEEEe
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKL--IFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l--~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
|+++|| ..++.+.+++.++.|+.++|..+++..++++..|++ .+.|..+.|+..++...+.++..+.+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~ 74 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLV 74 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEE
Confidence 789999 678999999999999999999999999999999999 678899999988999999988886554
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=2.2e-05 Score=72.80 Aligned_cols=133 Identities=20% Similarity=0.322 Sum_probs=80.9
Q ss_pred HHhhcccceeecccccCccCChhhhhcCCceeEEEccCC-cCccccccccCCCCCCEEEcCCC-CCCCCCCChHhhcCCC
Q 017986 115 SERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTN-SIQCVPDQIDGLTGLKKLLLDAN-DLSNDSISWVQLAKLK 192 (363)
Q Consensus 115 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n-~i~~i~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~~l~ 192 (363)
+..+..++.|++++|.++.+|. ..++|+.|.++++ .++.+|..+ ..+|++|.+++| .+.. + .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s--L-------P~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG--L-------PE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc--c-------cc
Confidence 3456778888888888888872 2346888888874 566666544 357888888887 3321 1 13
Q ss_pred CcCEEEcCCCcCC---CCCccccCCCCCCEEEcccCcCC---CcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEE
Q 017986 193 HLTVLSISRNCLN---SLPGILGHLTALQHLDVSNNKLT---TLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEI 266 (363)
Q Consensus 193 ~L~~L~l~~n~l~---~l~~~l~~l~~L~~L~l~~n~i~---~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L 266 (363)
+|+.|++..+... .+|. +|+.|.+.++... .++. .-+++|++|++++|....+|+.+. .+|+.|
T Consensus 113 sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L 182 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSI 182 (426)
T ss_pred ccceEEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEE
Confidence 5777777666543 3333 3555555432211 1111 123578888888777665554433 477777
Q ss_pred ECCCCC
Q 017986 267 DLSSNL 272 (363)
Q Consensus 267 ~L~~n~ 272 (363)
+++.+.
T Consensus 183 ~ls~n~ 188 (426)
T PRK15386 183 TLHIEQ 188 (426)
T ss_pred Eecccc
Confidence 776653
No 77
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=7.5e-06 Score=50.99 Aligned_cols=36 Identities=36% Similarity=0.562 Sum_probs=15.1
Q ss_pred cCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCC
Q 017986 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTT 229 (363)
Q Consensus 194 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~ 229 (363)
|++|++++|+++.+|+.++.+++|+.|++++|.++.
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 444444444444444334444444444444444443
No 78
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=98.00 E-value=1.8e-05 Score=55.06 Aligned_cols=66 Identities=26% Similarity=0.414 Sum_probs=57.6
Q ss_pred EEEE-e-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCC-cccccccccCCcEEEE
Q 017986 8 ITVK-F-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANE-ETLGVAGVTNGVKLML 73 (363)
Q Consensus 8 ~~v~-~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~-~~~~~~~~~~~~~l~~ 73 (363)
++|| . .++.+++.+.+..|+.++|..+++.+|+|+..|++.+.|+.+.|+ ..++...+.++..+.+
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 3566 4 788999999999999999999999999999999999999999987 4688888888876543
No 79
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=97.99 E-value=1.7e-05 Score=56.01 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=59.2
Q ss_pred eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 12 FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 12 ~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
..++.+++.+.+..|+.++|..|++.+|+|+..|++.+.|..+.|+..++...+.++..+.+.-
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEE
Confidence 4788999999999999999999999999999999999999999999999999999998876654
No 80
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=97.99 E-value=1.8e-05 Score=53.83 Aligned_cols=63 Identities=37% Similarity=0.556 Sum_probs=55.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCC
Q 017986 6 IKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNG 68 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~ 68 (363)
|+|.||+.++..++.+.+..|+.+||..+.+.+++++..+++.+.|..+.|...++...+.++
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~ 63 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDG 63 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCC
Confidence 578999777899999999999999999999999999999999999999988877777766554
No 81
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=4.4e-05 Score=70.90 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=86.1
Q ss_pred CCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCC-cCCCCCccccCCCCCCEE
Q 017986 142 SPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRN-CLNSLPGILGHLTALQHL 220 (363)
Q Consensus 142 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L 220 (363)
+++++.|++++|.++.+|. -.++|+.|.+++|.-.. .++ ..+ .++|+.|++++| .+..+|. .|+.|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLt-sLP-~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLT-TLP-GSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcc-cCC-chh--hhhhhheEccCccccccccc------ccceE
Confidence 4789999999999999883 24579999998854432 222 111 357999999998 6766664 46677
Q ss_pred EcccCcCCCcchhhcCCCCCCEEeccCCcCc---cCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCC
Q 017986 221 DVSNNKLTTLPTEIGLLSKLEVLKANNNRIS---FLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNA 295 (363)
Q Consensus 221 ~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~---~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~ 295 (363)
++..+....++. -+++|+.|.+.+++.. .++. .-.++|++|++++|....+|..+. .+|+.|+++.+.
T Consensus 118 ~L~~n~~~~L~~---LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 118 EIKGSATDSIKN---VPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred EeCCCCCccccc---CcchHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence 777665433211 1224566666443211 1111 112689999999988766664433 588999988763
No 82
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=97.90 E-value=4.9e-05 Score=53.45 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=55.6
Q ss_pred cEEEEEE-eCCeE--EEEEeCCCCcHHHHHHhhcccc--CCCCCCeEEEecceeecCCccccccc--ccCCcEEEEe
Q 017986 5 EIKITVK-FCGRP--IPITLSPDSTVLRLKNLLLPLT--NVLPRGQKLIFKGKVLANEETLGVAG--VTNGVKLMLI 74 (363)
Q Consensus 5 ~~~~~v~-~~~~~--~~i~~~~~~~~~~l~~~l~~~~--~~~~~~~~l~~~~~~~~d~~~~~~~~--~~~~~~l~~~ 74 (363)
+|+++|| ..+++ +.+++.+..|+.++|..+.+.. ..+++.|+|.++|+.+.|+..++... +..+..+.++
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence 4889999 57777 5555589999999999998775 35579999999999999998887773 6666665543
No 83
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=97.83 E-value=8.6e-05 Score=51.35 Aligned_cols=64 Identities=31% Similarity=0.575 Sum_probs=59.4
Q ss_pred eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 12 FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 12 ~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
..++.+++.+.++.++.+||..+.+.+++|+..+++.+.|..+.|...+....+.++..+.+..
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEE
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEE
Confidence 4677999999999999999999999999999999999999999999999999999999877654
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.74 E-value=8.9e-05 Score=58.08 Aligned_cols=120 Identities=21% Similarity=0.429 Sum_probs=50.2
Q ss_pred HhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccCcCCCcc-hhhcCCCCCCEEeccCCcCccCCc-cccCCCC
Q 017986 186 VQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLP-TEIGLLSKLEVLKANNNRISFLPE-SIGNCTS 262 (363)
Q Consensus 186 ~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~ 262 (363)
.+|.++.+|+.+.+.. .+..++ ..+..++.|+.+.+..+ +..++ ..+..+..++.+.+.. .+..++. .+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455566666666653 344443 34555556666666553 44443 2345555666666654 3433332 3555677
Q ss_pred CcEEECCCCCCCCCC-hhccCCCCCCEEECCCCCCCCCChhhhhCCCCCC
Q 017986 263 LIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLS 311 (363)
Q Consensus 263 L~~L~L~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 311 (363)
++.+++..+ +..++ ..+..+ .++.+.+.. .++.++..+|.+|++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 777777554 44442 345555 777777765 56677777777777653
No 85
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=97.71 E-value=0.00012 Score=51.04 Aligned_cols=68 Identities=28% Similarity=0.405 Sum_probs=58.7
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
|+++|| ..++ ..+.+.+..|+.++|..+++..|+++..+++.+.|+.+.|+..++...+.++..+.+.
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 467888 4444 5889999999999999999999999999999999999999999999999888876553
No 86
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.66 E-value=0.00013 Score=57.07 Aligned_cols=106 Identities=18% Similarity=0.294 Sum_probs=38.5
Q ss_pred CChhhhhcCCceeEEEccCCcCcccc-ccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccc
Q 017986 134 IPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GIL 211 (363)
Q Consensus 134 i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l 211 (363)
|+..+|..+++|+.+.+.. .+..++ ..|.++++|+.+.+..+ +. .+....|..+++++.+.+.. .+..++ ..+
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc--ccceeeeecccccccccccc-cccccccccc
Confidence 3444555555555555543 344442 23445555555555443 22 13333455555555555543 333332 223
Q ss_pred cCCCCCCEEEcccCcCCCcch-hhcCCCCCCEEecc
Q 017986 212 GHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKAN 246 (363)
Q Consensus 212 ~~l~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~ 246 (363)
..+++++.+.+..+ +..++. .+..+ .++.+.+.
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 34555555555443 333322 22333 55555444
No 87
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.64 E-value=9.5e-05 Score=68.71 Aligned_cols=76 Identities=28% Similarity=0.438 Sum_probs=69.2
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccC
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQG 78 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~ 78 (363)
++.|+|+||-.+.++.+.+..+.++++||+.|...++++++.++|+|.|+.++|+..+....+.+++++.++-...
T Consensus 13 ~~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 13 ASLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred cceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 3579999996666999999999999999999999999999999999999999999999999999999987765443
No 88
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=1.6e-06 Score=74.81 Aligned_cols=101 Identities=23% Similarity=0.219 Sum_probs=75.3
Q ss_pred CCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCCh-hhhhCCCCCCEEEc
Q 017986 237 LSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPT-TLFSKCVQLSTLEL 315 (363)
Q Consensus 237 ~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 315 (363)
+.+.+.|++++|++.++ .....++.|+.|.|+-|.|+++. .+..|++|++|+|..|.|.++.+ ..+.++|+|++|.|
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 44667788888888866 23567788888989888888875 56788889999999998888875 45678899999999
Q ss_pred cCCccchhh-----hhcccCchHHHHHHH
Q 017986 316 HNTEITMDA-----LRQLEGWDDFDKRRR 339 (363)
Q Consensus 316 ~~n~i~~~~-----~~~l~~l~~l~~~~~ 339 (363)
..|+=.+.+ ...+..+|+|+++++
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccC
Confidence 998866553 234455566665544
No 89
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=0.00017 Score=66.80 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=65.3
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccC---CCCCCeEEEecceeecCCcccccccccCCcEEEEeecc
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTN---VLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~---~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
|+|+|| ..++++.|++.++.|+.++|..|....| +++..+||++.|+.+.|+..++...+.++..+.+....
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 589999 8899999999999999999999999988 99999999999999999999999999988886665443
No 90
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=8e-05 Score=74.64 Aligned_cols=130 Identities=22% Similarity=0.232 Sum_probs=76.0
Q ss_pred CceeEEEccCCcCc--ccccc-ccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCE
Q 017986 143 PFIRVLDIRTNSIQ--CVPDQ-IDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQH 219 (363)
Q Consensus 143 ~~L~~L~L~~n~i~--~i~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~ 219 (363)
.+|+.|++++...- .-+.. -..+|+|++|.+.+-.+..... ...+.++|+|..||+++++++.+. .++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~nl~-GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNISNLS-GISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhH-HHHhhccCccceeecCCCCccCcH-HHhccccHHH
Confidence 45777777664221 11111 1346777777777655543111 134566777777777777777663 3677777777
Q ss_pred EEcccCcCCCcc--hhhcCCCCCCEEeccCCcCccCC-------ccccCCCCCcEEECCCCCCC
Q 017986 220 LDVSNNKLTTLP--TEIGLLSKLEVLKANNNRISFLP-------ESIGNCTSLIEIDLSSNLLS 274 (363)
Q Consensus 220 L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~i~~~~-------~~~~~~~~L~~L~L~~n~l~ 274 (363)
|.+.+=.+..-. ..+..+++|+.||+|.......+ +.-..+|+|+.||.++..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 766555554321 34567777777777765443221 12244678888888876665
No 91
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=97.39 E-value=0.00058 Score=47.89 Aligned_cols=59 Identities=32% Similarity=0.340 Sum_probs=49.1
Q ss_pred eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeec-CCccccccccc-CCcEE
Q 017986 12 FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLA-NEETLGVAGVT-NGVKL 71 (363)
Q Consensus 12 ~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~-d~~~~~~~~~~-~~~~l 71 (363)
-.+.+..+.+.+..|+.++|..+++.+|+|+..|++ +.|+.+. |...++...+. +|..+
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~ 70 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSA 70 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEE
Confidence 456688899999999999999999999999999999 9998885 54678877777 44443
No 92
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=97.29 E-value=0.00076 Score=46.34 Aligned_cols=66 Identities=36% Similarity=0.612 Sum_probs=57.8
Q ss_pred EE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 10 VK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 10 v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|| +.++.+.+.+.+..++.++|..+.+.+++++..+++.+.+..+.|...+....+.++..+.+..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 66 4588999999999999999999999999999999999999999888888888888887766643
No 93
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=97.23 E-value=0.0023 Score=46.44 Aligned_cols=71 Identities=14% Similarity=0.297 Sum_probs=64.5
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
..|++.|+ -.++.+.+.+..+.++..+++.+.+..|+++..+++.|.|..+.+......+.+.++..+.+.
T Consensus 10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 46788888 557789999999999999999999999999999999999999999999999999999887664
No 94
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=1.6e-05 Score=68.81 Aligned_cols=80 Identities=31% Similarity=0.308 Sum_probs=51.6
Q ss_pred CCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchh--hcCCCCCCE
Q 017986 165 LTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTE--IGLLSKLEV 242 (363)
Q Consensus 165 l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~--~~~~~~L~~ 242 (363)
+.+.+.|++.+|.+.+ + ..+..++.|++|.|+-|.|+++.. +..+++|++|++..|.|..+.+- +.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~D--I--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD--I--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccH--H--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 4455666777776664 2 245667777777777777776644 56677777777777777665332 366677777
Q ss_pred EeccCCc
Q 017986 243 LKANNNR 249 (363)
Q Consensus 243 L~l~~n~ 249 (363)
|+|..|.
T Consensus 93 LWL~ENP 99 (388)
T KOG2123|consen 93 LWLDENP 99 (388)
T ss_pred HhhccCC
Confidence 7776654
No 95
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00027 Score=60.85 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=15.9
Q ss_pred CCCCCEEEcccC--cCC-CcchhhcCCCCCCEEeccCCcCc
Q 017986 214 LTALQHLDVSNN--KLT-TLPTEIGLLSKLEVLKANNNRIS 251 (363)
Q Consensus 214 l~~L~~L~l~~n--~i~-~l~~~~~~~~~L~~L~l~~n~i~ 251 (363)
+++|+.|.++.| ++. .++.....+++|+++++++|+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 445555555555 222 12222223344444444444443
No 96
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.11 E-value=3.2e-05 Score=70.52 Aligned_cols=123 Identities=24% Similarity=0.191 Sum_probs=71.7
Q ss_pred CCCCCEEEcccCc-CCCc-chhh-cCCCCCCEEeccCCc-CccCC--ccccCCCCCcEEECCCCCCC---CCChhccCCC
Q 017986 214 LTALQHLDVSNNK-LTTL-PTEI-GLLSKLEVLKANNNR-ISFLP--ESIGNCTSLIEIDLSSNLLS---ELPVTLENLH 284 (363)
Q Consensus 214 l~~L~~L~l~~n~-i~~l-~~~~-~~~~~L~~L~l~~n~-i~~~~--~~~~~~~~L~~L~L~~n~l~---~l~~~~~~~~ 284 (363)
+..|+.+..+++. ++.. -..+ ....+|+.+-+.+|+ ++... ..-.+++.|+.+++..+... ++...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 3456666665553 2211 1122 556788888888775 33221 11256678888888777644 2444445778
Q ss_pred CCCEEECCCCC-CCCCChhhh----hCCCCCCEEEccCCcc-chhhhhcccCchHHHH
Q 017986 285 YLKALHLDNNA-LKSLPTTLF----SKCVQLSTLELHNTEI-TMDALRQLEGWDDFDK 336 (363)
Q Consensus 285 ~L~~L~L~~n~-l~~~~~~~~----~~l~~L~~L~L~~n~i-~~~~~~~l~~l~~l~~ 336 (363)
.|+.+.+++|. +++.....+ .++..|..+.|++++. +...+..+..++.|+.
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 88888888874 443322223 2356788888888875 4445555555555554
No 97
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.00027 Score=51.23 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=58.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEE
Q 017986 6 IKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKL 71 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l 71 (363)
+.+-+++.++++.+.+.+..+++.+|+.+...+|+||+.+.+.+.++.++|...+....+.....+
T Consensus 2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl 67 (128)
T KOG0003|consen 2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67 (128)
T ss_pred cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhh
Confidence 345567999999999999999999999999999999999999999999999988888777665553
No 98
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.00037 Score=60.02 Aligned_cols=55 Identities=33% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCCcCEEEcCCCcCCCCC--ccccCCCCCCEEEcccCcCCCcc----hhhcCCCCCCEEec
Q 017986 191 LKHLTVLSISRNCLNSLP--GILGHLTALQHLDVSNNKLTTLP----TEIGLLSKLEVLKA 245 (363)
Q Consensus 191 l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~i~~l~----~~~~~~~~L~~L~l 245 (363)
+|+|++++++.|++..+. ..+..+.+|..|++..|..+.+. ..+..+++|++|+-
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 355555555555444221 11334444555555555444321 12344455555543
No 99
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=96.86 E-value=0.0092 Score=42.88 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=55.4
Q ss_pred EEEEEEeC--CeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEE-ecce-----ee-cCCcccccccccCCcEEEEeec
Q 017986 6 IKITVKFC--GRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLI-FKGK-----VL-ANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 6 ~~~~v~~~--~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~-~~~~-----~~-~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
++|.|+.. .......+....|+.+||..++..+|+++..+++. +.+. .+ .|...+....+.+|..+.+...
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 45566644 66777779999999999999999999999999996 4544 23 4556688888888888877654
No 100
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.71 E-value=7.9e-05 Score=68.04 Aligned_cols=242 Identities=20% Similarity=0.210 Sum_probs=136.8
Q ss_pred CCcccccccccccccccCCCCChH----Hhhcccceeecccc-cCccCChh-hhhcCCceeEEEccCCc-Cc--cccccc
Q 017986 92 SPITSRKTDRVRDMKMVPVGKTSS----ERWKATGVIALAEH-NLKAIPDE-VWDCSPFIRVLDIRTNS-IQ--CVPDQI 162 (363)
Q Consensus 92 ~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~l~~L~l~~n-~i~~i~~~-~~~~~~~L~~L~L~~n~-i~--~i~~~~ 162 (363)
...+.++++.+.++.. +....+ ..+..++.+++..+ .|++..-. ....+++|++|+++.+. +. .+...+
T Consensus 161 ~~CpnIehL~l~gc~~--iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKK--ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred hhCCchhhhhhhccee--ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 3455566666665552 222222 24456666766663 45533322 44556677777776552 22 111112
Q ss_pred cCCCCCC--------------------------EEEcCCCC-CCCCCCChHhhcCCCCcCEEEcCCC-cCCCCC--cccc
Q 017986 163 DGLTGLK--------------------------KLLLDAND-LSNDSISWVQLAKLKHLTVLSISRN-CLNSLP--GILG 212 (363)
Q Consensus 163 ~~l~~L~--------------------------~L~L~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~--~~l~ 212 (363)
.++..++ .+++..|. +++. --+..-..+..|++++.+++ .++..+ ..-.
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~-~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE-DLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch-HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 2233333 33333332 2221 11223344667788887766 333221 2234
Q ss_pred CCCCCCEEEcccCc-CCCcc-hhh-cCCCCCCEEeccCCcCc---cCCccccCCCCCcEEECCCCCCC-CC-----Chhc
Q 017986 213 HLTALQHLDVSNNK-LTTLP-TEI-GLLSKLEVLKANNNRIS---FLPESIGNCTSLIEIDLSSNLLS-EL-----PVTL 280 (363)
Q Consensus 213 ~l~~L~~L~l~~n~-i~~l~-~~~-~~~~~L~~L~l~~n~i~---~~~~~~~~~~~L~~L~L~~n~l~-~l-----~~~~ 280 (363)
+..+|+.+.++.|+ ++... ..+ .+++.|+.+++.++... .+..--.+|+.|+.+.++++... +- ...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 56789999999885 33221 112 56788999999888654 23334567899999999987643 21 2223
Q ss_pred cCCCCCCEEECCCCCCC-CCChhhhhCCCCCCEEEccCCc-cchhhhhcc-cCchHHHH
Q 017986 281 ENLHYLKALHLDNNALK-SLPTTLFSKCVQLSTLELHNTE-ITMDALRQL-EGWDDFDK 336 (363)
Q Consensus 281 ~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l-~~l~~l~~ 336 (363)
..+..++.+.|++++.. +-.-..+..|++|+.+++.+++ ++.+.+..+ ..+|+++.
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 45678899999999655 3333556788999999998886 666655443 44555543
No 101
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=96.61 E-value=0.0051 Score=54.48 Aligned_cols=73 Identities=27% Similarity=0.429 Sum_probs=66.2
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccC--CCCCCeEEEecceeecCCcccccccccCCcEEEEeeccC
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTN--VLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQG 78 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~--~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~ 78 (363)
++++|| ..+.++.|.+.++.++.++|..|+...| +|...||++..|+.+.|+..+....+....-+.+..+.+
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 478999 8888999999999999999999999987 999999999999999999999999999888876666554
No 102
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=96.61 E-value=0.011 Score=42.82 Aligned_cols=72 Identities=24% Similarity=0.418 Sum_probs=54.7
Q ss_pred EEEEEEeCCe---EEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecc--------eeecCCcccccccccCCcEEEEe
Q 017986 6 IKITVKFCGR---PIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKG--------KVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 6 ~~~~v~~~~~---~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~--------~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
++|.|..... .....+....|+.+||..++.++|+++..+++.+.. ....|...+....+.+|..+.+.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 5677775444 889999999999999999999999999999999771 12234566888888888888776
Q ss_pred ecc
Q 017986 75 GTQ 77 (363)
Q Consensus 75 ~~~ 77 (363)
...
T Consensus 82 D~~ 84 (87)
T PF14560_consen 82 DTN 84 (87)
T ss_dssp E-T
T ss_pred eCC
Confidence 653
No 103
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0021 Score=50.46 Aligned_cols=68 Identities=28% Similarity=0.445 Sum_probs=60.5
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
++|.|+ ..++++...+..+++++.+|+.|++-+++|+.+|++.|.+.++.|...+++..+.....+.+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l 69 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 69 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEE
Confidence 356778 55678999999999999999999999999999999999999999999999998888877554
No 104
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=96.52 E-value=0.011 Score=40.95 Aligned_cols=68 Identities=28% Similarity=0.435 Sum_probs=59.9
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCC-CCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLP-RGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~-~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
|+++|+ ..++.+.+.+.++.++..+...+.+..++++ ...++.|.|..+.+....+.+.+.++..+.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEE
Confidence 788999 4566999999999999999999999999999 9999999999999999999999999887665
No 105
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.35 E-value=1.5e-05 Score=76.32 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=17.3
Q ss_pred cceeecccccCccCChh----hhhcCCceeEEEccCCcCc
Q 017986 121 TGVIALAEHNLKAIPDE----VWDCSPFIRVLDIRTNSIQ 156 (363)
Q Consensus 121 l~~L~l~~n~i~~i~~~----~~~~~~~L~~L~L~~n~i~ 156 (363)
+..+.+.+|.+..-... .+...+.|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 44455555555533321 1233345555555555555
No 106
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.14 E-value=0.00079 Score=65.14 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=26.3
Q ss_pred CCCCcCEEEcCCCc-CCCCC--ccccCCCCCCEEEcccCc-CCC--cchhhcCCCCCCEEeccCCc
Q 017986 190 KLKHLTVLSISRNC-LNSLP--GILGHLTALQHLDVSNNK-LTT--LPTEIGLLSKLEVLKANNNR 249 (363)
Q Consensus 190 ~l~~L~~L~l~~n~-l~~l~--~~l~~l~~L~~L~l~~n~-i~~--l~~~~~~~~~L~~L~l~~n~ 249 (363)
.+++|+.++++++. ++... .....+++|+.|.+.+|. ++. +-.....++.|++|+++++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34555555555554 33221 111224455555544443 331 11222444555555555554
No 107
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.11 E-value=0.0015 Score=63.14 Aligned_cols=128 Identities=21% Similarity=0.179 Sum_probs=78.4
Q ss_pred hhcccceeecccc-cCccCC-hhhhhcCCceeEEEccCC--cCcccc----ccccCCCCCCEEEcCCCC-CCCCCCChHh
Q 017986 117 RWKATGVIALAEH-NLKAIP-DEVWDCSPFIRVLDIRTN--SIQCVP----DQIDGLTGLKKLLLDAND-LSNDSISWVQ 187 (363)
Q Consensus 117 ~~~~l~~L~l~~n-~i~~i~-~~~~~~~~~L~~L~L~~n--~i~~i~----~~~~~l~~L~~L~L~~n~-~~~~~~~~~~ 187 (363)
..+.++.+.+.++ .+.... ..+...+++|+.|+++++ .+...+ .....+.+|+.|+++++. +++..+. ..
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-AL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-HH
Confidence 3577777777776 344422 234566788999999873 222111 223557889999999888 6653333 12
Q ss_pred hcCCCCcCEEEcCCCc-CCC--CCccccCCCCCCEEEcccCcCC---CcchhhcCCCCCCEEec
Q 017986 188 LAKLKHLTVLSISRNC-LNS--LPGILGHLTALQHLDVSNNKLT---TLPTEIGLLSKLEVLKA 245 (363)
Q Consensus 188 ~~~l~~L~~L~l~~n~-l~~--l~~~l~~l~~L~~L~l~~n~i~---~l~~~~~~~~~L~~L~l 245 (363)
...+++|+.|.+..+. ++. +......++.|++|+++.|... .+......+++++.+.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 2348899999987775 552 3344566778999999988543 12222344565555443
No 108
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0043 Score=32.14 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=13.1
Q ss_pred ceeEEEccCCcCcccccccc
Q 017986 144 FIRVLDIRTNSIQCVPDQID 163 (363)
Q Consensus 144 ~L~~L~L~~n~i~~i~~~~~ 163 (363)
+|++|+|++|+++.+|..|.
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 36677777777776665543
No 109
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.89 E-value=0.00011 Score=70.60 Aligned_cols=180 Identities=28% Similarity=0.342 Sum_probs=82.9
Q ss_pred eeEEEccCCcCcc-----ccccccCCCCCCEEEcCCCCCCCCCCCh--HhhcCC-CCcCEEEcCCCcCCC-----CCccc
Q 017986 145 IRVLDIRTNSIQC-----VPDQIDGLTGLKKLLLDANDLSNDSISW--VQLAKL-KHLTVLSISRNCLNS-----LPGIL 211 (363)
Q Consensus 145 L~~L~L~~n~i~~-----i~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~~l-~~L~~L~l~~n~l~~-----l~~~l 211 (363)
+..|.|.+|.+.. +...+...++|+.|++++|.+.+..... ..+... ..+++|++..|.++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4555555555542 2233445556666666666655321110 011111 234455555555442 22334
Q ss_pred cCCCCCCEEEcccCcCC-----Ccchhhc----CCCCCCEEeccCCcCccC-----CccccCCCC-CcEEECCCCCCCCC
Q 017986 212 GHLTALQHLDVSNNKLT-----TLPTEIG----LLSKLEVLKANNNRISFL-----PESIGNCTS-LIEIDLSSNLLSEL 276 (363)
Q Consensus 212 ~~l~~L~~L~l~~n~i~-----~l~~~~~----~~~~L~~L~l~~n~i~~~-----~~~~~~~~~-L~~L~L~~n~l~~l 276 (363)
.....++.++++.|.+. .++..+. ...++++|.+.+|.++.. ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 44445555566555543 1112222 344556666666655411 112233333 44466666655522
Q ss_pred -----ChhccCC-CCCCEEECCCCCCCCCC----hhhhhCCCCCCEEEccCCccchhh
Q 017986 277 -----PVTLENL-HYLKALHLDNNALKSLP----TTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 277 -----~~~~~~~-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
...+... +.+++++++.|.++.-. ......+++++.+.+++|+++...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 1223333 45566666666665222 233344556666666666665543
No 110
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=95.83 E-value=0.013 Score=40.71 Aligned_cols=52 Identities=25% Similarity=0.399 Sum_probs=46.0
Q ss_pred CCCcHHHHHHhhcccc--CCC-CCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 23 PDSTVLRLKNLLLPLT--NVL-PRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 23 ~~~~~~~l~~~l~~~~--~~~-~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
.+.|+.++|..|++.. +++ ++.|+|.+.|+.+.|+..++...+..+..+.++
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv 73 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHIL 73 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEE
Confidence 4689999999999885 564 899999999999999999999999999887764
No 111
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=95.17 E-value=0.057 Score=39.22 Aligned_cols=60 Identities=28% Similarity=0.418 Sum_probs=51.5
Q ss_pred EEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCC-cccccccccCCcEEEEee
Q 017986 16 PIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANE-ETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 16 ~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~-~~~~~~~~~~~~~l~~~~ 75 (363)
..++.+.++.|+.+||..|.+..+++|..|++.+.|..+.|+ ..+....+..++.+.+.-
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKA 76 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEe
Confidence 456778999999999999999999999999999999878777 558888888888866654
No 112
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.88 E-value=0.03 Score=30.17 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=16.7
Q ss_pred CCCCEEECCCCCCCCCChhhhh
Q 017986 284 HYLKALHLDNNALKSLPTTLFS 305 (363)
Q Consensus 284 ~~L~~L~L~~n~l~~~~~~~~~ 305 (363)
++|++|+|++|.|+.+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677888888888888777664
No 113
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.88 E-value=0.03 Score=30.17 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=16.7
Q ss_pred CCCCEEECCCCCCCCCChhhhh
Q 017986 284 HYLKALHLDNNALKSLPTTLFS 305 (363)
Q Consensus 284 ~~L~~L~L~~n~l~~~~~~~~~ 305 (363)
++|++|+|++|.|+.+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677888888888888777664
No 114
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.88 E-value=0.0065 Score=31.43 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=6.4
Q ss_pred CCEEECCCCCCCCCC
Q 017986 286 LKALHLDNNALKSLP 300 (363)
Q Consensus 286 L~~L~L~~n~l~~~~ 300 (363)
|++|++++|+++.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 344444444444443
No 115
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.56 E-value=0.017 Score=30.46 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=16.3
Q ss_pred CCCCCEEEccCCccchhhhhcc
Q 017986 307 CVQLSTLELHNTEITMDALRQL 328 (363)
Q Consensus 307 l~~L~~L~L~~n~i~~~~~~~l 328 (363)
+++|+.|+|++|+|+++++..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4789999999999999887665
No 116
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.10 E-value=0.03 Score=26.87 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=6.0
Q ss_pred ceeEEEccCCcCccc
Q 017986 144 FIRVLDIRTNSIQCV 158 (363)
Q Consensus 144 ~L~~L~L~~n~i~~i 158 (363)
+|++|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 355555555555443
No 117
>PLN02560 enoyl-CoA reductase
Probab=93.83 E-value=0.19 Score=45.54 Aligned_cols=70 Identities=27% Similarity=0.415 Sum_probs=51.2
Q ss_pred EEEEEE-eCCeEE---EEEeCCCCcHHHHHHhhccccCC-CCCCeEEEec---c----eeecCCcccccccccCCcEEEE
Q 017986 6 IKITVK-FCGRPI---PITLSPDSTVLRLKNLLLPLTNV-LPRGQKLIFK---G----KVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 6 ~~~~v~-~~~~~~---~i~~~~~~~~~~l~~~l~~~~~~-~~~~~~l~~~---~----~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
|+++|+ ..++.+ .+++.++.|+.++|..+++..+. ++..|++.+. + ..+.|+..+....+.++.++.+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 356777 335554 78999999999999999988865 8899999973 2 2456666677777777776555
Q ss_pred ee
Q 017986 74 IG 75 (363)
Q Consensus 74 ~~ 75 (363)
-+
T Consensus 81 kD 82 (308)
T PLN02560 81 KD 82 (308)
T ss_pred Ee
Confidence 33
No 118
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=93.23 E-value=0.21 Score=37.29 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=50.2
Q ss_pred EEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccc
Q 017986 7 KITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGV 65 (363)
Q Consensus 7 ~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~ 65 (363)
=+-||..+-++-++-.+..++.++|..|+++...||..|+|+-.+..+.|...+....+
T Consensus 4 FlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~ 62 (119)
T cd01788 4 FLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGF 62 (119)
T ss_pred EEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCc
Confidence 35678888899999999999999999999999999999999955566777777766655
No 119
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.87 E-value=0.08 Score=28.44 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=13.0
Q ss_pred cccceeecccccCccCChhhhh
Q 017986 119 KATGVIALAEHNLKAIPDEVWD 140 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~ 140 (363)
..|+.|++++|.|+.+|.++|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 3456666666666666665553
No 120
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.87 E-value=0.08 Score=28.44 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=13.0
Q ss_pred cccceeecccccCccCChhhhh
Q 017986 119 KATGVIALAEHNLKAIPDEVWD 140 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~ 140 (363)
..|+.|++++|.|+.+|.++|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 3456666666666666665553
No 121
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=92.70 E-value=0.19 Score=37.62 Aligned_cols=60 Identities=28% Similarity=0.310 Sum_probs=46.1
Q ss_pred cEEEEEE-eCC-eEEEEEeCCCCcHHHHHHhhcc-----ccCCC--CCCeEEEecceeecCCccccccc
Q 017986 5 EIKITVK-FCG-RPIPITLSPDSTVLRLKNLLLP-----LTNVL--PRGQKLIFKGKVLANEETLGVAG 64 (363)
Q Consensus 5 ~~~~~v~-~~~-~~~~i~~~~~~~~~~l~~~l~~-----~~~~~--~~~~~l~~~~~~~~d~~~~~~~~ 64 (363)
.+-++-| +.| -.=|....++.|+.++|..|.+ -+++| +..|+|++.|+.+.|+..++...
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~ 72 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECR 72 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhC
Confidence 3445555 333 2556677899999999988883 34555 99999999999999999888887
No 122
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=91.97 E-value=0.81 Score=31.36 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=51.4
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecce-----eecCCcccccccccCCcEEEEee
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGK-----VLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~-----~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+|+|+ |+...+-..+.+-..+-.+|+.|..--+++. .|++.|+.. .+.+..+++...+.....+.+++
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 589999 9888999999999999999999998887776 888887652 34444455555555555554443
No 123
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.79 E-value=0.0032 Score=53.47 Aligned_cols=86 Identities=21% Similarity=0.282 Sum_probs=53.7
Q ss_pred cCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEEC
Q 017986 212 GHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHL 291 (363)
Q Consensus 212 ~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L 291 (363)
......+.||++.|++-.+...+..++.+..++++.|.+..+|..+.....+..+++..|..+..|..++..++++.+++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34455666666666665555555555666666666666666666665555556666666666666666666666666666
Q ss_pred CCCCCC
Q 017986 292 DNNALK 297 (363)
Q Consensus 292 ~~n~l~ 297 (363)
-+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 666554
No 124
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=0.1 Score=43.62 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=16.6
Q ss_pred CCCCEEEccCCc-cchhhhhcccCchHHHHHH
Q 017986 308 VQLSTLELHNTE-ITMDALRQLEGWDDFDKRR 338 (363)
Q Consensus 308 ~~L~~L~L~~n~-i~~~~~~~l~~l~~l~~~~ 338 (363)
++|+.|++++|+ ||..++..+..+++|+.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455555555543 5555555555555555443
No 125
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.09 E-value=0.0032 Score=53.53 Aligned_cols=88 Identities=25% Similarity=0.250 Sum_probs=63.2
Q ss_pred hhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEE
Q 017986 187 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEI 266 (363)
Q Consensus 187 ~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L 266 (363)
.+..+...+.||++.|++..+...++.+..+..|+++.|.+..+|..++....+..+++..|..+..|-.+...++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 45556667777777777766665566666677777777777777777777777777777777777777777777777777
Q ss_pred ECCCCCCC
Q 017986 267 DLSSNLLS 274 (363)
Q Consensus 267 ~L~~n~l~ 274 (363)
++-++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777654
No 126
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=0.65 Score=47.83 Aligned_cols=72 Identities=22% Similarity=0.389 Sum_probs=64.0
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeecc
Q 017986 5 EIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 5 ~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
++.|+|| .+.+.-.+.+..-.|+.+||..+.+-++++.+.|+++++|+.+.|+......++ +|+.+.+++..
T Consensus 2 e~~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 2 EPNVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred CcceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccC
Confidence 4569999 777777788888899999999999999999999999999999999999999998 88888887653
No 127
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.40 E-value=0.26 Score=27.06 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.3
Q ss_pred CCCCEEEccCCccchhhhhcc
Q 017986 308 VQLSTLELHNTEITMDALRQL 328 (363)
Q Consensus 308 ~~L~~L~L~~n~i~~~~~~~l 328 (363)
++|+.|+|++|.|+.++...+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 578999999999988876655
No 128
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=86.12 E-value=3 Score=26.63 Aligned_cols=61 Identities=30% Similarity=0.472 Sum_probs=46.8
Q ss_pred CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 13 CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 13 ~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
.+....+.+.+..++.+++..+.+..+.++..+++.+.+....+........+..+..+.+
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 66 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVL 66 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEE
Confidence 3667778888999999999999999899999999999888777665543444555554443
No 129
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=85.70 E-value=8.2 Score=25.76 Aligned_cols=63 Identities=29% Similarity=0.433 Sum_probs=53.6
Q ss_pred eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 12 FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 12 ~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
..++..++.+....++..+|..+....++++..|.+.+.+..+.|...+....+.....+.+.
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~ 69 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLV 69 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEE
Confidence 678889999999999999999999999999999999999999998877777666666665543
No 130
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=83.91 E-value=0.78 Score=52.41 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=29.7
Q ss_pred ECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 290 HLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 290 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
||++|+|+.++...|..+++|+.|+|++|++.|++
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccc
Confidence 57888888888888888888888888888888875
No 131
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=83.72 E-value=2.2 Score=29.84 Aligned_cols=55 Identities=33% Similarity=0.428 Sum_probs=40.8
Q ss_pred EEEEeCCCCcHHHHHHhhcccc-CCCCCCeEEE--ecceeecCCcccccccccCCcEEE
Q 017986 17 IPITLSPDSTVLRLKNLLLPLT-NVLPRGQKLI--FKGKVLANEETLGVAGVTNGVKLM 72 (363)
Q Consensus 17 ~~i~~~~~~~~~~l~~~l~~~~-~~~~~~~~l~--~~~~~~~d~~~~~~~~~~~~~~l~ 72 (363)
++++ .++.|+.+||..+.+.. .+++..|++. ..|..+.|...+....+.++..+.
T Consensus 16 ~~~~-~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~ly 73 (77)
T cd01801 16 LKVS-SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLY 73 (77)
T ss_pred cccC-CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEE
Confidence 3444 68899999999998776 4678888886 677778777777777776666544
No 132
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.60 E-value=0.24 Score=41.46 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=22.0
Q ss_pred CCCCCEEECCCC-CCCCCChhhhhCCCCCCEEEccCC
Q 017986 283 LHYLKALHLDNN-ALKSLPTTLFSKCVQLSTLELHNT 318 (363)
Q Consensus 283 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 318 (363)
.++|+.|++++| .||+-.-..+..+++|+.|.+.+=
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 456677777766 566655555566666666655543
No 133
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.15 E-value=0.73 Score=24.63 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=15.0
Q ss_pred CCCCCEEEccCCc-cchhhhhcc
Q 017986 307 CVQLSTLELHNTE-ITMDALRQL 328 (363)
Q Consensus 307 l~~L~~L~L~~n~-i~~~~~~~l 328 (363)
|++|+.|++++|. ||+.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 4677777777774 777766554
No 134
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=80.24 E-value=2.2 Score=37.94 Aligned_cols=58 Identities=21% Similarity=0.428 Sum_probs=49.5
Q ss_pred CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcE
Q 017986 13 CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVK 70 (363)
Q Consensus 13 ~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~ 70 (363)
..+.++|.+..+..+.++|+-..+..|+|+..-+++|.|+.+.++......++..-+.
T Consensus 12 ~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~ 69 (446)
T KOG0006|consen 12 SSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSA 69 (446)
T ss_pred ccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccch
Confidence 3458999999999999999999999999999999999999999988777555554333
No 135
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=78.30 E-value=7.9 Score=27.37 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=31.9
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEec
Q 017986 4 NEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFK 50 (363)
Q Consensus 4 ~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~ 50 (363)
.+|=+-||..+....|.+++..++.+|++.+.+..+++...+.+...
T Consensus 3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~ 49 (80)
T PF11543_consen 3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKD 49 (80)
T ss_dssp ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSS
T ss_pred ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEec
Confidence 46678888889999999999999999999999999999887776543
No 136
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=75.59 E-value=10 Score=26.60 Aligned_cols=69 Identities=29% Similarity=0.333 Sum_probs=47.4
Q ss_pred cEEEEEEeCC-eEEEEEeCCCCcHHHHHHhhccccCCCC---C---CeEEE-ecceeecCCcccccccccCCcEEEE
Q 017986 5 EIKITVKFCG-RPIPITLSPDSTVLRLKNLLLPLTNVLP---R---GQKLI-FKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 5 ~~~~~v~~~~-~~~~i~~~~~~~~~~l~~~l~~~~~~~~---~---~~~l~-~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
-++|+|.+.. +.+++.+..+.++.++-..+-+..+.+. . ..++. ..|..+.+...+....+.+|..+.+
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 3799999986 9999999999999998855555543322 2 23455 7788899999999999999887654
No 137
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.57 E-value=2.5 Score=22.73 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=8.5
Q ss_pred CCCCEEECCCCCCCCC
Q 017986 284 HYLKALHLDNNALKSL 299 (363)
Q Consensus 284 ~~L~~L~L~~n~l~~~ 299 (363)
.+|+.|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 3455555555555543
No 138
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.26 E-value=2.4 Score=22.81 Aligned_cols=17 Identities=47% Similarity=0.616 Sum_probs=10.4
Q ss_pred CcCEEEcCCCcCCCCCc
Q 017986 193 HLTVLSISRNCLNSLPG 209 (363)
Q Consensus 193 ~L~~L~l~~n~l~~l~~ 209 (363)
+|+.|+.++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666654
No 139
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.12 E-value=2.1 Score=41.35 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=35.9
Q ss_pred hhcccceeecccccCccCCh--hhhhcCCceeEEEccCC--cCcccccccc--CCCCCCEEEcCCCCCCC
Q 017986 117 RWKATGVIALAEHNLKAIPD--EVWDCSPFIRVLDIRTN--SIQCVPDQID--GLTGLKKLLLDANDLSN 180 (363)
Q Consensus 117 ~~~~l~~L~l~~n~i~~i~~--~~~~~~~~L~~L~L~~n--~i~~i~~~~~--~l~~L~~L~L~~n~~~~ 180 (363)
+.+.+..++|++|++..+.. .+....|+|+.|+|++| .+..-+ .+. +...|+.|.+.||.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcccc
Confidence 44555667777777765543 23344577777777777 333221 111 22346677777777754
No 140
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=72.47 E-value=39 Score=25.53 Aligned_cols=64 Identities=25% Similarity=0.462 Sum_probs=44.6
Q ss_pred EEEEEE-eCCe-EEEEEeCCCCcHHHHHHhhccc-c-CC-----CCCCeEEEecceeecCCcccccccccCCc
Q 017986 6 IKITVK-FCGR-PIPITLSPDSTVLRLKNLLLPL-T-NV-----LPRGQKLIFKGKVLANEETLGVAGVTNGV 69 (363)
Q Consensus 6 ~~~~v~-~~~~-~~~i~~~~~~~~~~l~~~l~~~-~-~~-----~~~~~~l~~~~~~~~d~~~~~~~~~~~~~ 69 (363)
|.++-+ ..|+ .-+....+..|+.++|..+..- . +. .+..-+|+..|+.+.|...++...+..+.
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~ 75 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGE 75 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTS
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCC
Confidence 556666 6777 8999999999999999766532 1 11 22667899999999999999988777654
No 141
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=65.98 E-value=26 Score=23.60 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=41.4
Q ss_pred EEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 10 VKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 10 v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
|.+..+...|.+.+..++.++=...-+-.++.++.-.+...++.+.-...+....+.+++++++
T Consensus 2 i~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 2 ICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp E-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred CccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 4567788999999999998887655556688888888889998888778888888999888763
No 142
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.08 E-value=4.6 Score=39.17 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=6.5
Q ss_pred CCCCEEeccCCcCc
Q 017986 238 SKLEVLKANNNRIS 251 (363)
Q Consensus 238 ~~L~~L~l~~n~i~ 251 (363)
+.+..+++++|++-
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 34444445555443
No 143
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=61.14 E-value=35 Score=23.75 Aligned_cols=46 Identities=9% Similarity=0.229 Sum_probs=36.6
Q ss_pred cEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEec
Q 017986 5 EIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFK 50 (363)
Q Consensus 5 ~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~ 50 (363)
+++|+|++++....+.+....+..+|...+.+..+.+...-.+.+.
T Consensus 1 ~~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 1 TVDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred CccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 3678889998999999999999999999999988776533344433
No 144
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=53.35 E-value=24 Score=24.80 Aligned_cols=39 Identities=21% Similarity=0.110 Sum_probs=34.7
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCC
Q 017986 6 IKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRG 44 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~ 44 (363)
++++|++.+..=.++...+.+++.|+..+..+.++|+.-
T Consensus 1 ~~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~ 39 (82)
T cd06397 1 TQFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIK 39 (82)
T ss_pred CeEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhH
Confidence 367899999999999999999999999999999998754
No 145
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=51.17 E-value=51 Score=23.33 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=32.3
Q ss_pred EEEEEEeCCeEEEEEeCC--CCcHHHHHHhhccccCCC
Q 017986 6 IKITVKFCGRPIPITLSP--DSTVLRLKNLLLPLTNVL 41 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~--~~~~~~l~~~l~~~~~~~ 41 (363)
++|++.+.+.++-+.+.+ ..++.+|+..+...++++
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 478888999999999998 779999999999998887
No 146
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=50.94 E-value=67 Score=22.34 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=36.2
Q ss_pred cEEEEEEeCCeEEE-EEeCCCCcHHHHHHhhccccCCCCCCeEEEe
Q 017986 5 EIKITVKFCGRPIP-ITLSPDSTVLRLKNLLLPLTNVLPRGQKLIF 49 (363)
Q Consensus 5 ~~~~~v~~~~~~~~-i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~ 49 (363)
+++|++.+.+...- +.+....+..+|...+.+..+.++..-++.+
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y 46 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKY 46 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEe
Confidence 47889999999777 9999999999999999998877744444443
No 147
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=47.44 E-value=66 Score=22.71 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=38.5
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEeccee
Q 017986 6 IKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKV 53 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~ 53 (363)
--|+|.++. ++.|.+.++....+|.+.+.+-.++|++.-++.++...
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 346666666 99999999999999999999998898877777766643
No 148
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.26 E-value=9.6 Score=25.36 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=47.9
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
|.+.+- .-+|++.|.--+++|+-++|..+...+|-.+..-.+.-....+.|.-.++..++.++..+++
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 445555 67888899988999999999999888887775444443344556666666666666665543
No 149
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=45.76 E-value=57 Score=23.39 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=33.4
Q ss_pred cEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCC
Q 017986 5 EIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVL 41 (363)
Q Consensus 5 ~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~ 41 (363)
-|+|+|.+.+-..-+.+.++++..+|...+.+.+++.
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~ 38 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK 38 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3778888889999999999999999999999999874
No 150
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=45.44 E-value=28 Score=25.58 Aligned_cols=56 Identities=27% Similarity=0.446 Sum_probs=39.4
Q ss_pred EEEEeC----CeEEEEEeCCCCcHHHHHHhhcccc--CCCCCCeEEEecceeecCCcccccc
Q 017986 8 ITVKFC----GRPIPITLSPDSTVLRLKNLLLPLT--NVLPRGQKLIFKGKVLANEETLGVA 63 (363)
Q Consensus 8 ~~v~~~----~~~~~i~~~~~~~~~~l~~~l~~~~--~~~~~~~~l~~~~~~~~d~~~~~~~ 63 (363)
++||+. +..++|+--...|+.+||..+.+.. .......++...|+.+.|.+.+...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 445543 3345555447899999998888776 4444677788999999988776554
No 151
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=45.18 E-value=1e+02 Score=21.39 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=45.2
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCC--CeEEE-ecceeecCCc--ccccccccCCcEE
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPR--GQKLI-FKGKVLANEE--TLGVAGVTNGVKL 71 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~--~~~l~-~~~~~~~d~~--~~~~~~~~~~~~l 71 (363)
...++.|| ..|+.+.-.+..+.++.++..-+......+.. .+... +....+.++. .+..+.+.....+
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l 78 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATL 78 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEE
Confidence 46789999 66678999999999999999777765533332 33322 5566666664 5555555554443
No 152
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=43.26 E-value=1.3e+02 Score=22.12 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=61.6
Q ss_pred CcEEEEEEeCCe-EEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeecc
Q 017986 4 NEIKITVKFCGR-PIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 4 ~~~~~~v~~~~~-~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
.-|+++|+=++. .+...+.-.+...-|.....+..|+....-+..|.|..+.+...-..+.+.++..+++....
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q 93 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQ 93 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeec
Confidence 457788885444 66788888888888889999999999999999999999999999999999999888776543
No 153
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.20 E-value=18 Score=42.15 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=27.2
Q ss_pred ecccccCccCChhhhhcCCceeEEEccCCcCc
Q 017986 125 ALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQ 156 (363)
Q Consensus 125 ~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~ 156 (363)
+|++|+|+.|+...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47888888888888888888899999888776
No 154
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=41.48 E-value=1.2e+02 Score=21.12 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=44.3
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEE-ecceeecCC---cccccccccCCcEE
Q 017986 5 EIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLI-FKGKVLANE---ETLGVAGVTNGVKL 71 (363)
Q Consensus 5 ~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~-~~~~~~~d~---~~~~~~~~~~~~~l 71 (363)
..++.|| ..|..+.-.+..+.++.++.+-+....+.....+.+. +..+.+.++ ..+..+.+.+...+
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L 75 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVL 75 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEE
Confidence 4688999 7788899999999999999988875543333333333 666666543 34555555554443
No 155
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=41.28 E-value=23 Score=33.93 Aligned_cols=181 Identities=22% Similarity=0.159 Sum_probs=90.8
Q ss_pred CceeEEEccCCcCc-cccccccCCCCCCEEEcCCCCCCCCCCChHhhcC-CCCcCEEEcCCCcCC-CCCccccCC---CC
Q 017986 143 PFIRVLDIRTNSIQ-CVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAK-LKHLTVLSISRNCLN-SLPGILGHL---TA 216 (363)
Q Consensus 143 ~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~-~l~~~l~~l---~~ 216 (363)
+.+++++++.|.+. .+|..+.. .---+.++.|..+..++.....+. -..+.+++++.|... .+|..+..+ .-
T Consensus 165 pr~r~~dls~npi~dkvpihl~~--p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQ--PGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccC--CCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 55778888888776 33322211 011156666666554333211111 123777888888665 455433222 23
Q ss_pred CCEEEcccCcCC--Cc--chhhcCCCCCCEEeccCCcCc-----cCCcc----ccCCCCCcEEECCCCCCC--CCChhc-
Q 017986 217 LQHLDVSNNKLT--TL--PTEIGLLSKLEVLKANNNRIS-----FLPES----IGNCTSLIEIDLSSNLLS--ELPVTL- 280 (363)
Q Consensus 217 L~~L~l~~n~i~--~l--~~~~~~~~~L~~L~l~~n~i~-----~~~~~----~~~~~~L~~L~L~~n~l~--~l~~~~- 280 (363)
++.++.+...+. .+ +-..+.-+.++..+++.|... +.+.. ++.-.++ +|++.++... ..+..+
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Confidence 566677666554 22 122355567888888777654 33322 3333455 6666555433 111111
Q ss_pred ----cCCCCCCEEECCCCCCCCCC-hhhhhCCCCCCEEEccCCccchhhhh
Q 017986 281 ----ENLHYLKALHLDNNALKSLP-TTLFSKCVQLSTLELHNTEITMDALR 326 (363)
Q Consensus 281 ----~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~ 326 (363)
..-..=-++++..|...+-. ..+..+-..+++|....|...++.-.
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred ccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccc
Confidence 01111224566666554221 11122225688888888888776533
No 156
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=37.41 E-value=1.4e+02 Score=20.71 Aligned_cols=36 Identities=6% Similarity=0.162 Sum_probs=29.6
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccC
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTN 39 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~ 39 (363)
...++.|| ..|..+...+..+.++.++.+-+....+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~ 39 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT 39 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc
Confidence 35789999 7778899999999999999988854443
No 157
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=33.35 E-value=92 Score=22.06 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=31.6
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCC
Q 017986 6 IKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVL 41 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~ 41 (363)
++|++.+++-..-+.+.+..+..+|+..+.+..++.
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~ 36 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLD 36 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 467888999999999999999999999998888664
No 158
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=31.95 E-value=1.1e+02 Score=21.03 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=30.8
Q ss_pred EEEEEEeCCeEEEEEeC-CCCcHHHHHHhhccccCCCC
Q 017986 6 IKITVKFCGRPIPITLS-PDSTVLRLKNLLLPLTNVLP 42 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~-~~~~~~~l~~~l~~~~~~~~ 42 (363)
++|++++.+....+.+. ...+..+|+..+.+..+.+.
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~ 38 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDA 38 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCC
Confidence 46788888777777777 89999999999999887765
No 159
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=31.16 E-value=1.8e+02 Score=19.98 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=39.6
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEE-ecceeecC---Cccccccccc
Q 017986 5 EIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLI-FKGKVLAN---EETLGVAGVT 66 (363)
Q Consensus 5 ~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~-~~~~~~~d---~~~~~~~~~~ 66 (363)
..++.|| ..|+.+.-.+..+.++.++.+-+..........+.+. +..+.+.+ ...+..+.+.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~ 68 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPPAEPFTLMTSFPRRVLTDLDYELTLQEAGLV 68 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCCCEEEEeCCCCccCCCCCccCcHHHcCCc
Confidence 3578899 7777899999999999999977765543233333332 44555544 2334444444
No 160
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=30.84 E-value=88 Score=22.78 Aligned_cols=43 Identities=23% Similarity=0.117 Sum_probs=37.7
Q ss_pred EEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEe
Q 017986 7 KITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIF 49 (363)
Q Consensus 7 ~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~ 49 (363)
-+-||.-+-++=++-.+..++.++|..+.++..-|+..|++..
T Consensus 4 f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~k 46 (110)
T KOG4495|consen 4 FLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYK 46 (110)
T ss_pred eeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheee
Confidence 4567788889999999999999999999999988998888874
No 161
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.27 E-value=1.6e+02 Score=20.97 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=32.2
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCC
Q 017986 6 IKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLP 42 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~ 42 (363)
|++++.+.+...-..+....+.+.|.+.+.+++....
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~ 37 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHN 37 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCC
Confidence 5788889999999999999999999999999985544
No 162
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=24.92 E-value=1.8e+02 Score=23.71 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=38.1
Q ss_pred EEEEEE-eCC----eEEEEEeCCCCcHHHHHHhhccccCCCCCCe-EEEe-cceee
Q 017986 6 IKITVK-FCG----RPIPITLSPDSTVLRLKNLLLPLTNVLPRGQ-KLIF-KGKVL 54 (363)
Q Consensus 6 ~~~~v~-~~~----~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~-~l~~-~~~~~ 54 (363)
|+|-|+ +.+ .++.+++..+.++.++...+.+..++++..+ .+.. .++.+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l 56 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQL 56 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCee
Confidence 578888 666 4888999999999999999999998887774 3454 34455
No 163
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=22.81 E-value=2.9e+02 Score=23.46 Aligned_cols=63 Identities=25% Similarity=0.384 Sum_probs=44.4
Q ss_pred EEEEeCCCCcHHHHHHhhccccCCCCCCeEEE-ecc-----eeecC-CcccccccccCCcEEEEeeccCc
Q 017986 17 IPITLSPDSTVLRLKNLLLPLTNVLPRGQKLI-FKG-----KVLAN-EETLGVAGVTNGVKLMLIGTQGV 79 (363)
Q Consensus 17 ~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~-~~~-----~~~~d-~~~~~~~~~~~~~~l~~~~~~~~ 79 (363)
....+....++.+||..|+-++|.++.-=.+- +.+ ..+.+ +..+..+...++-.+.++.+.+.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~ 84 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQ 84 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcc
Confidence 44457788999999999999998887443333 322 23333 35578888888888888887654
No 164
>COG5417 Uncharacterized small protein [Function unknown]
Probab=20.90 E-value=3e+02 Score=19.13 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=43.1
Q ss_pred cEEEEEE---eCCeEEEEEeCCCCcHHHHHHhhc---ccc--CCCCCCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 5 EIKITVK---FCGRPIPITLSPDSTVLRLKNLLL---PLT--NVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 5 ~~~~~v~---~~~~~~~i~~~~~~~~~~l~~~l~---~~~--~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
-|+|||. |.++.+++.++.-..+..+=...- ++. ......=+..-++..+.++..+....+.+|..++.
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 4788887 888899999876655444432221 121 11222334556667788888888888888777654
Done!