Query 017986
Match_columns 363
No_of_seqs 242 out of 3635
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 08:05:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyj_A Leucine-rich repeat-con 99.9 1.3E-26 4.4E-31 220.7 20.2 228 94-324 63-295 (440)
2 2id5_A Lingo-1, leucine rich r 99.9 1.2E-26 4.2E-31 223.1 20.0 279 39-324 29-336 (477)
3 3o6n_A APL1; leucine-rich repe 99.9 5.1E-26 1.7E-30 213.2 23.1 231 90-326 88-357 (390)
4 3zyi_A Leucine-rich repeat-con 99.9 1.9E-26 6.4E-31 220.4 20.0 228 94-324 74-306 (452)
5 3v47_A TOLL-like receptor 5B a 99.9 4.9E-26 1.7E-30 217.4 21.7 288 34-325 22-412 (455)
6 2id5_A Lingo-1, leucine rich r 99.9 1.3E-26 4.6E-31 222.8 16.5 245 90-336 51-324 (477)
7 1ozn_A Reticulon 4 receptor; N 99.9 1E-25 3.4E-30 202.2 20.9 222 99-325 15-242 (285)
8 2z66_A Variable lymphocyte rec 99.9 4.1E-26 1.4E-30 206.8 18.4 230 94-324 27-264 (306)
9 1xku_A Decorin; proteoglycan, 99.9 1.2E-25 4.3E-30 205.8 21.0 227 91-322 72-307 (330)
10 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-26 4E-31 211.1 13.4 240 95-338 50-297 (313)
11 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-26 7.3E-31 211.1 14.2 238 92-335 75-323 (332)
12 3v47_A TOLL-like receptor 5B a 99.9 3.1E-26 1.1E-30 218.8 15.9 118 89-207 48-169 (455)
13 4fcg_A Uncharacterized protein 99.9 6.1E-26 2.1E-30 207.7 17.1 213 119-335 81-304 (328)
14 1xku_A Decorin; proteoglycan, 99.9 5E-25 1.7E-29 201.8 23.1 229 95-330 52-285 (330)
15 3o6n_A APL1; leucine-rich repe 99.9 1.6E-25 5.4E-30 209.8 19.1 234 92-331 66-341 (390)
16 2z80_A TOLL-like receptor 2, v 99.9 1.7E-26 5.7E-31 213.7 12.0 227 96-324 53-317 (353)
17 3oja_B Anopheles plasmodium-re 99.9 4.3E-25 1.5E-29 218.1 22.7 227 90-325 94-362 (597)
18 4fmz_A Internalin; leucine ric 99.9 1.2E-24 4.2E-29 200.5 23.9 270 43-335 45-314 (347)
19 2ft3_A Biglycan; proteoglycan, 99.9 4.1E-25 1.4E-29 202.5 20.0 230 94-331 53-287 (332)
20 4fcg_A Uncharacterized protein 99.9 3.6E-25 1.2E-29 202.6 19.5 227 94-322 80-315 (328)
21 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-25 5E-30 221.8 17.6 129 211-339 395-528 (606)
22 3rgz_A Protein brassinosteroid 99.9 4.7E-25 1.6E-29 223.9 20.7 241 94-336 393-708 (768)
23 4fmz_A Internalin; leucine ric 99.9 4.2E-24 1.4E-28 196.9 24.6 272 41-336 65-337 (347)
24 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-25 6.3E-30 203.6 15.1 235 93-340 32-270 (317)
25 3rgz_A Protein brassinosteroid 99.9 1.4E-24 4.7E-29 220.5 22.7 234 91-326 414-722 (768)
26 2z66_A Variable lymphocyte rec 99.9 2.9E-25 9.9E-30 201.2 15.6 231 100-336 12-252 (306)
27 3t6q_A CD180 antigen; protein- 99.9 7.2E-25 2.5E-29 216.8 19.6 278 39-323 30-365 (606)
28 3zyj_A Leucine-rich repeat-con 99.9 7.3E-25 2.5E-29 208.6 18.5 233 99-337 47-284 (440)
29 2o6q_A Variable lymphocyte rec 99.9 3E-24 1E-28 191.0 21.3 200 120-324 17-221 (270)
30 3oja_B Anopheles plasmodium-re 99.9 9.3E-25 3.2E-29 215.7 18.9 235 92-332 72-348 (597)
31 2z62_A TOLL-like receptor 4, v 99.9 7.4E-25 2.5E-29 195.6 16.4 204 119-324 28-240 (276)
32 3zyi_A Leucine-rich repeat-con 99.9 1.6E-24 5.4E-29 207.0 19.3 233 99-337 58-295 (452)
33 4ecn_A Leucine-rich repeat pro 99.9 1.3E-24 4.5E-29 220.9 19.4 254 92-359 512-824 (876)
34 1ziw_A TOLL-like receptor 3; i 99.9 7.5E-24 2.6E-28 212.4 23.5 237 95-331 381-634 (680)
35 3oja_A Leucine-rich immune mol 99.9 1.4E-24 4.8E-29 209.1 16.7 235 93-340 32-270 (487)
36 3t6q_A CD180 antigen; protein- 99.9 3.6E-24 1.2E-28 211.8 19.5 208 115-324 346-563 (606)
37 1h6u_A Internalin H; cell adhe 99.9 1.2E-23 4E-28 190.8 20.8 199 114-325 36-234 (308)
38 1ogq_A PGIP-2, polygalacturona 99.9 8E-25 2.7E-29 199.0 12.7 229 89-322 70-305 (313)
39 1p9a_G Platelet glycoprotein I 99.9 1.2E-23 4.1E-28 189.1 19.7 202 115-324 6-211 (290)
40 1ozn_A Reticulon 4 receptor; N 99.9 3.6E-24 1.2E-28 192.0 15.2 233 94-330 31-270 (285)
41 1wwl_A Monocyte differentiatio 99.9 1.1E-24 3.8E-29 198.0 11.9 221 97-323 65-311 (312)
42 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-23 7.2E-28 209.1 21.9 235 93-329 327-605 (680)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.3E-23 2.1E-27 201.2 24.7 136 190-325 351-514 (562)
44 3vq2_A TLR4, TOLL-like recepto 99.9 6.9E-24 2.4E-28 209.8 17.9 228 93-324 326-561 (606)
45 4eco_A Uncharacterized protein 99.9 2.1E-24 7.1E-29 214.6 14.1 239 92-335 270-569 (636)
46 2z63_A TOLL-like receptor 4, v 99.9 6.6E-24 2.3E-28 208.3 17.3 87 237-323 444-533 (570)
47 2z7x_B TOLL-like receptor 1, v 99.9 9.9E-24 3.4E-28 204.9 18.4 230 91-328 41-419 (520)
48 1o6v_A Internalin A; bacterial 99.9 6.6E-23 2.2E-27 196.6 23.1 108 212-324 262-369 (466)
49 2z7x_B TOLL-like receptor 1, v 99.9 4.8E-23 1.6E-27 200.1 22.2 136 190-325 322-485 (520)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.1E-23 1.7E-27 201.9 22.4 231 90-328 71-448 (562)
51 4ecn_A Leucine-rich repeat pro 99.9 8.1E-24 2.8E-28 215.1 16.3 239 93-336 489-780 (876)
52 4eco_A Uncharacterized protein 99.9 2.3E-24 7.8E-29 214.3 11.7 228 91-321 202-470 (636)
53 2z81_A CD282 antigen, TOLL-lik 99.9 4.3E-23 1.5E-27 201.7 20.2 227 93-325 279-514 (549)
54 1o6v_A Internalin A; bacterial 99.9 2.5E-22 8.5E-27 192.5 24.9 173 140-323 174-346 (466)
55 3bz5_A Internalin-J, INLJ; leu 99.9 8.6E-23 2.9E-27 195.0 20.9 187 93-300 62-249 (457)
56 2z80_A TOLL-like receptor 2, v 99.9 1E-23 3.4E-28 194.9 13.6 230 101-335 37-304 (353)
57 2z81_A CD282 antigen, TOLL-lik 99.9 3.9E-23 1.3E-27 202.0 17.8 145 190-336 332-501 (549)
58 3rfs_A Internalin B, repeat mo 99.9 6.4E-23 2.2E-27 182.7 15.8 177 142-323 40-220 (272)
59 2z63_A TOLL-like receptor 4, v 99.9 4.8E-23 1.6E-27 202.1 16.3 137 39-180 25-163 (570)
60 3j0a_A TOLL-like receptor 5; m 99.9 6.8E-23 2.3E-27 210.1 18.0 283 34-322 16-376 (844)
61 4g8a_A TOLL-like receptor 4; l 99.9 2E-22 6.9E-27 199.8 20.5 116 89-205 70-186 (635)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-23 4.8E-28 191.1 10.6 210 114-336 29-241 (317)
63 2xwt_C Thyrotropin receptor; s 99.9 6.3E-23 2.2E-27 179.1 13.8 194 119-318 31-236 (239)
64 3j0a_A TOLL-like receptor 5; m 99.9 7.5E-23 2.6E-27 209.8 15.3 242 95-336 24-342 (844)
65 4g8a_A TOLL-like receptor 4; l 99.9 9.3E-22 3.2E-26 195.0 21.9 141 34-179 43-186 (635)
66 2z62_A TOLL-like receptor 4, v 99.9 3.2E-22 1.1E-26 178.4 16.8 203 94-298 27-238 (276)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-21 6.5E-26 191.5 23.2 216 93-332 79-308 (622)
68 4glp_A Monocyte differentiatio 99.9 5.6E-23 1.9E-27 186.5 10.6 201 117-323 89-309 (310)
69 2xwt_C Thyrotropin receptor; s 99.9 7.9E-23 2.7E-27 178.5 10.8 196 131-333 23-230 (239)
70 3bz5_A Internalin-J, INLJ; leu 99.9 1E-21 3.6E-26 187.5 19.3 218 92-332 39-257 (457)
71 3rfs_A Internalin B, repeat mo 99.9 9.5E-22 3.3E-26 175.0 17.8 225 96-334 20-248 (272)
72 3m19_A Variable lymphocyte rec 99.9 2.1E-21 7.3E-26 170.7 19.5 176 145-324 16-195 (251)
73 3oja_A Leucine-rich immune mol 99.9 2.2E-22 7.6E-27 193.7 14.2 206 117-335 32-240 (487)
74 2o6q_A Variable lymphocyte rec 99.9 3E-21 1E-25 171.6 20.5 197 97-298 18-219 (270)
75 1h6u_A Internalin H; cell adhe 99.9 1.2E-21 4.2E-26 177.5 17.4 197 93-302 39-235 (308)
76 1p9a_G Platelet glycoprotein I 99.9 1.9E-21 6.6E-26 174.6 17.6 180 139-323 6-187 (290)
77 3cvr_A Invasion plasmid antige 99.9 1.7E-21 5.9E-26 189.7 18.5 189 120-333 60-255 (571)
78 1wwl_A Monocyte differentiatio 99.9 6.4E-22 2.2E-26 179.7 11.8 202 94-299 94-311 (312)
79 1h6t_A Internalin B; cell adhe 99.9 2.8E-21 9.5E-26 173.7 14.9 170 144-324 47-216 (291)
80 1jl5_A Outer protein YOPM; leu 99.9 2.4E-20 8.1E-25 177.9 21.8 215 91-331 149-382 (454)
81 2ca6_A RAN GTPase-activating p 99.9 1.3E-22 4.4E-27 189.8 5.1 232 93-324 30-319 (386)
82 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-20 9.4E-25 183.3 21.4 211 95-336 61-288 (622)
83 4glp_A Monocyte differentiatio 99.8 1.7E-21 5.8E-26 176.8 9.8 201 95-298 91-308 (310)
84 3m19_A Variable lymphocyte rec 99.8 7.2E-20 2.5E-24 160.9 18.9 176 119-299 14-194 (251)
85 1h6t_A Internalin B; cell adhe 99.8 2.9E-20 1E-24 167.0 15.4 178 114-302 41-218 (291)
86 1m9s_A Internalin B; cell inva 99.8 2.6E-20 8.8E-25 183.2 15.4 177 114-301 38-214 (605)
87 1jl5_A Outer protein YOPM; leu 99.8 8.2E-20 2.8E-24 174.2 17.2 198 98-322 74-271 (454)
88 1m9s_A Internalin B; cell inva 99.8 4E-20 1.4E-24 181.8 14.4 200 118-330 20-219 (605)
89 3goz_A Leucine-rich repeat-con 99.8 4.7E-21 1.6E-25 177.7 7.3 234 93-326 20-302 (362)
90 2ast_B S-phase kinase-associat 99.8 6E-21 2E-25 174.9 7.3 225 97-328 49-291 (336)
91 4ay9_X Follicle-stimulating ho 99.8 3.5E-20 1.2E-24 170.9 11.5 212 99-318 13-233 (350)
92 3cvr_A Invasion plasmid antige 99.8 2.3E-19 7.9E-24 174.7 16.8 187 96-307 60-253 (571)
93 1xeu_A Internalin C; cellular 99.8 8.2E-20 2.8E-24 161.6 11.9 172 117-300 17-188 (263)
94 1z7x_W Ribonuclease inhibitor; 99.8 2.2E-21 7.4E-26 185.5 1.8 232 96-327 143-417 (461)
95 2xot_A Amphoterin-induced prot 99.8 1.9E-19 6.5E-24 166.8 14.4 135 190-324 62-205 (361)
96 2ca6_A RAN GTPase-activating p 99.8 1.7E-20 5.9E-25 175.3 7.1 213 113-325 26-291 (386)
97 3goz_A Leucine-rich repeat-con 99.8 2.7E-20 9.3E-25 172.5 8.1 207 115-321 18-266 (362)
98 2ast_B S-phase kinase-associat 99.8 3.6E-20 1.2E-24 169.7 5.5 212 121-336 49-276 (336)
99 1xeu_A Internalin C; cellular 99.8 3.3E-19 1.1E-23 157.8 11.5 167 97-276 21-187 (263)
100 2o6s_A Variable lymphocyte rec 99.8 1.6E-18 5.3E-23 147.8 14.1 138 188-332 48-189 (208)
101 1z7x_W Ribonuclease inhibitor; 99.8 2.2E-20 7.6E-25 178.4 2.4 231 96-328 86-361 (461)
102 4ay9_X Follicle-stimulating ho 99.8 1E-18 3.5E-23 161.1 12.7 220 94-319 29-257 (350)
103 3e6j_A Variable lymphocyte rec 99.8 9.7E-18 3.3E-22 145.2 16.8 133 192-324 40-175 (229)
104 2v9t_B SLIT homolog 2 protein 99.8 9E-18 3.1E-22 144.5 15.5 132 193-324 33-168 (220)
105 4ezg_A Putative uncharacterize 99.8 5.2E-18 1.8E-22 143.4 12.9 150 143-322 44-195 (197)
106 4ezg_A Putative uncharacterize 99.8 5.7E-18 2E-22 143.1 12.9 155 113-274 38-194 (197)
107 2o6s_A Variable lymphocyte rec 99.8 4E-18 1.4E-22 145.3 11.7 176 122-308 10-189 (208)
108 2xot_A Amphoterin-induced prot 99.8 5.4E-18 1.9E-22 156.9 13.1 172 122-298 21-203 (361)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-17 8.7E-22 141.6 16.1 130 195-324 35-169 (220)
110 3e6j_A Variable lymphocyte rec 99.7 6.5E-17 2.2E-21 140.0 16.7 147 123-274 23-172 (229)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 4.8E-17 1.6E-21 139.9 14.7 148 123-297 15-166 (220)
112 2v9t_B SLIT homolog 2 protein 99.7 4.4E-17 1.5E-21 140.1 14.4 148 122-274 14-165 (220)
113 1dce_A Protein (RAB geranylger 99.7 2.3E-19 7.9E-24 175.3 -3.5 105 217-323 443-548 (567)
114 2wfh_A SLIT homolog 2 protein 99.7 3E-16 1E-20 132.1 14.5 128 195-324 13-142 (193)
115 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.5E-21 131.1 10.2 129 192-321 24-160 (168)
116 1dce_A Protein (RAB geranylger 99.7 2.9E-19 9.7E-24 174.6 -7.0 197 116-315 346-567 (567)
117 1w8a_A SLIT protein; signaling 99.7 4.7E-16 1.6E-20 130.8 12.8 129 195-325 11-143 (192)
118 3sb4_A Hypothetical leucine ri 99.7 5.6E-17 1.9E-21 148.2 6.8 237 94-336 24-325 (329)
119 4b8c_D Glucose-repressible alc 99.7 2.3E-17 7.9E-22 165.9 4.4 190 119-318 173-369 (727)
120 3sb4_A Hypothetical leucine ri 99.7 2E-16 6.8E-21 144.5 10.2 219 94-315 48-328 (329)
121 1a9n_A U2A', U2A'; complex (nu 99.7 2.3E-16 7.8E-21 130.7 9.4 134 188-322 15-154 (176)
122 2ell_A Acidic leucine-rich nuc 99.7 2.9E-16 1E-20 129.0 9.6 107 143-253 24-135 (168)
123 2je0_A Acidic leucine-rich nuc 99.7 2.8E-16 9.4E-21 126.5 9.1 125 192-317 17-149 (149)
124 4fdw_A Leucine rich hypothetic 99.6 6.2E-15 2.1E-19 137.9 15.2 225 96-332 136-369 (401)
125 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 120.6 14.8 129 194-324 9-140 (177)
126 4b8c_D Glucose-repressible alc 99.6 1.3E-15 4.4E-20 153.2 10.7 185 143-330 173-363 (727)
127 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.1E-20 120.7 9.0 122 143-268 17-147 (149)
128 2wfh_A SLIT homolog 2 protein 99.6 2E-14 6.8E-19 120.8 12.5 125 122-251 13-139 (193)
129 3ogk_B Coronatine-insensitive 99.6 1.5E-15 5.1E-20 149.5 6.3 175 141-316 162-350 (592)
130 1a9n_A U2A', U2A'; complex (nu 99.6 6.2E-15 2.1E-19 122.0 8.5 15 144-158 20-34 (176)
131 4fdw_A Leucine rich hypothetic 99.5 6.1E-14 2.1E-18 131.2 15.2 215 96-321 158-383 (401)
132 1w8a_A SLIT protein; signaling 99.5 2.9E-14 9.8E-19 119.8 11.6 124 122-250 11-138 (192)
133 3ogk_B Coronatine-insensitive 99.5 6.1E-15 2.1E-19 145.1 6.6 134 94-227 163-305 (592)
134 1ds9_A Outer arm dynein; leuci 99.5 1.1E-16 3.9E-21 135.2 -7.1 132 187-322 43-186 (198)
135 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 112.7 11.7 106 217-324 11-118 (170)
136 1ds9_A Outer arm dynein; leuci 99.5 4.7E-16 1.6E-20 131.4 -4.6 122 203-326 36-158 (198)
137 2p1m_B Transport inhibitor res 99.5 3.9E-15 1.3E-19 146.5 0.9 239 94-336 104-376 (594)
138 2p1m_B Transport inhibitor res 99.5 1.8E-15 6.3E-20 148.8 -1.8 232 94-328 129-392 (594)
139 2o6r_A Variable lymphocyte rec 99.5 7.9E-13 2.7E-17 109.3 14.2 86 189-274 49-137 (177)
140 2r9u_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 111.2 11.8 105 218-324 15-121 (174)
141 3un9_A NLR family member X1; l 99.4 4E-14 1.4E-18 131.2 0.0 180 143-323 72-285 (372)
142 3un9_A NLR family member X1; l 99.3 1.1E-13 3.8E-18 128.2 1.2 165 165-331 71-262 (372)
143 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 102.0 12.8 106 194-301 14-122 (174)
144 3g39_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 100.5 12.8 105 194-300 11-118 (170)
145 2ifg_A High affinity nerve gro 99.3 2E-11 6.9E-16 111.9 10.5 96 226-323 20-118 (347)
146 4gt6_A Cell surface protein; l 99.2 7.6E-10 2.6E-14 103.3 16.7 110 211-323 261-372 (394)
147 4fs7_A Uncharacterized protein 99.1 6.5E-10 2.2E-14 103.7 15.3 77 257-336 293-370 (394)
148 2ifg_A High affinity nerve gro 99.1 1.8E-10 6.3E-15 105.5 9.1 102 196-298 12-117 (347)
149 4gt6_A Cell surface protein; l 99.1 8.4E-10 2.9E-14 103.0 13.6 100 233-336 260-361 (394)
150 4fs7_A Uncharacterized protein 99.1 1.4E-09 4.7E-14 101.5 13.1 202 110-318 153-376 (394)
151 4h09_A Hypothetical leucine ri 99.0 1.4E-08 4.6E-13 94.2 17.2 234 95-336 46-337 (379)
152 2ra8_A Uncharacterized protein 99.0 1.9E-09 6.4E-14 99.1 9.3 141 187-329 167-328 (362)
153 1v5t_A 8430435I17RIK protein; 98.9 3.5E-09 1.2E-13 76.7 7.3 77 2-78 4-84 (90)
154 1wgg_A Ubiquitin carboxyl-term 98.9 5.2E-09 1.8E-13 76.7 7.7 76 2-78 4-80 (96)
155 1io0_A Tropomodulin; LRR prote 98.8 2E-09 6.9E-14 89.4 3.9 114 211-324 32-167 (185)
156 2ra8_A Uncharacterized protein 98.8 7.5E-09 2.6E-13 95.1 7.5 82 236-319 250-341 (362)
157 3plu_A Ubiquitin-like modifier 98.7 3.1E-08 1.1E-12 70.6 7.7 71 3-73 19-90 (93)
158 1v86_A DNA segment, CHR 7, way 98.7 2.5E-08 8.6E-13 72.9 7.1 75 3-78 15-89 (95)
159 1io0_A Tropomodulin; LRR prote 98.7 8.9E-09 3E-13 85.5 4.8 87 211-297 61-164 (185)
160 3shq_A UBLCP1; phosphatase, hy 98.7 1.9E-08 6.5E-13 90.1 6.7 79 1-79 1-82 (320)
161 2kd0_A LRR repeats and ubiquit 98.7 1.2E-07 4E-12 67.8 9.6 75 3-77 10-84 (85)
162 1wxv_A BAG-family molecular ch 98.7 9.5E-08 3.2E-12 69.5 9.1 77 2-78 4-86 (92)
163 4h09_A Hypothetical leucine ri 98.7 1.7E-07 5.9E-12 86.6 12.8 213 114-337 41-315 (379)
164 2lxa_A Ubiquitin-like protein 98.7 3.1E-08 1.1E-12 70.8 5.8 75 5-79 1-80 (87)
165 3phx_B Ubiquitin-like protein 98.6 1.3E-07 4.4E-12 66.7 8.4 72 3-74 2-74 (79)
166 2bwf_A Ubiquitin-like protein 98.6 2.5E-07 8.7E-12 64.7 9.3 72 5-76 4-75 (77)
167 2kk8_A Uncharacterized protein 98.6 1.4E-07 4.6E-12 67.2 7.5 72 4-75 9-82 (84)
168 4a20_A Ubiquitin-like protein 98.6 2.1E-07 7E-12 68.1 8.3 75 2-76 16-95 (98)
169 2kan_A Uncharacterized protein 98.6 2.5E-07 8.5E-12 67.4 8.6 74 3-76 13-87 (94)
170 2dzi_A Ubiquitin-like protein 98.6 2.4E-07 8.2E-12 65.5 8.3 73 2-74 4-77 (81)
171 3v6c_B Ubiquitin; structural g 98.6 2.8E-07 9.7E-12 66.8 8.5 72 3-74 15-87 (91)
172 4eew_A Large proline-rich prot 98.5 2.9E-07 1E-11 66.2 8.2 71 3-74 15-86 (88)
173 3dbh_I NEDD8; cell cycle, acti 98.5 3.3E-07 1.1E-11 65.9 8.2 72 3-74 10-82 (88)
174 2dzm_A FAS-associated factor 1 98.5 1.2E-07 4.2E-12 69.4 5.4 70 5-74 9-79 (100)
175 2hj8_A Interferon-induced 17 k 98.5 2.4E-07 8.3E-12 66.6 6.8 74 3-76 2-76 (88)
176 4fbj_B NEDD8; effector-HOST ta 98.5 2.8E-07 9.5E-12 66.3 7.1 70 6-75 1-71 (88)
177 3m62_B UV excision repair prot 98.5 2.4E-07 8.3E-12 69.1 7.0 74 5-78 1-75 (106)
178 2klc_A Ubiquilin-1; ubiquitin- 98.5 5.5E-07 1.9E-11 66.5 8.8 75 2-76 22-96 (101)
179 4hcn_B Polyubiquitin, ubiquiti 98.5 2.8E-07 9.7E-12 67.7 7.2 73 3-75 20-93 (98)
180 2l7r_A Ubiquitin-like protein 98.5 2.1E-07 7.2E-12 67.7 6.4 71 3-74 17-87 (93)
181 3mtn_B UBA80, ubcep1, ubiquiti 98.5 5E-07 1.7E-11 64.5 8.1 72 4-75 2-74 (85)
182 3n3k_B Ubiquitin; hydrolase, p 98.5 2.9E-07 9.8E-12 65.8 6.7 72 4-75 2-74 (85)
183 4dwf_A HLA-B-associated transc 98.5 4.7E-07 1.6E-11 65.5 7.8 73 3-76 3-76 (90)
184 1uh6_A Ubiquitin-like 5; beta- 98.5 3E-07 1E-11 66.9 6.5 70 4-73 27-97 (100)
185 1yqb_A Ubiquilin 3; structural 98.5 5.4E-07 1.8E-11 66.4 7.7 75 2-76 19-93 (100)
186 3m63_B Ubiquitin domain-contai 98.4 1.1E-07 3.9E-12 70.2 3.8 73 4-76 27-99 (101)
187 1wh3_A 59 kDa 2'-5'-oligoadeny 98.4 9.9E-07 3.4E-11 63.3 8.7 73 3-75 5-78 (87)
188 2wyq_A HHR23A, UV excision rep 98.4 1.8E-06 6.2E-11 61.5 9.5 74 3-76 3-80 (85)
189 1wy8_A NP95-like ring finger p 98.4 1.3E-06 4.5E-11 62.9 8.7 74 2-75 4-80 (89)
190 1j8c_A Ubiquitin-like protein 98.4 1.6E-06 5.5E-11 66.5 9.5 75 3-77 30-104 (125)
191 1uel_A HHR23B, UV excision rep 98.4 1.7E-06 5.7E-11 63.2 9.1 72 6-77 1-76 (95)
192 1wx8_A Riken cDNA 4931431F19; 98.4 5.2E-07 1.8E-11 66.1 6.1 73 3-75 15-87 (96)
193 1ttn_A DC-UBP, dendritic cell- 98.4 2.1E-06 7.1E-11 64.0 9.4 75 3-77 21-96 (106)
194 1sif_A Ubiquitin; hydrophobic 98.4 9.4E-07 3.2E-11 63.5 7.3 71 5-75 9-80 (88)
195 2faz_A Ubiquitin-like containi 98.4 1.1E-06 3.6E-11 61.7 7.3 70 5-74 2-74 (78)
196 1v5o_A 1700011N24RIK protein; 98.4 1.7E-06 6E-11 63.9 8.4 75 3-77 5-85 (102)
197 1ndd_A NEDD8, protein (ubiquit 98.4 1.4E-06 4.8E-11 60.6 7.4 70 6-75 1-71 (76)
198 1wx7_A Ubiquilin 3; ubiquitin- 98.3 2.3E-06 7.9E-11 63.8 8.9 75 3-77 15-89 (106)
199 3vdz_A Ubiquitin-40S ribosomal 98.3 1.7E-06 5.8E-11 65.1 8.0 72 4-75 34-106 (111)
200 3a9j_A Ubiquitin; protein comp 98.3 1.7E-06 5.9E-11 60.1 7.4 70 6-75 1-71 (76)
201 3k9o_B Ubiquitin, UBB+1; E2-25 98.3 1.7E-06 5.9E-11 63.2 7.4 71 6-76 2-73 (96)
202 1wju_A NEDD8 ultimate buster-1 98.3 1.9E-06 6.5E-11 62.7 7.3 73 5-77 15-92 (100)
203 1x1m_A Ubiquitin-like protein 98.3 1.8E-06 6.3E-11 64.4 7.2 77 1-77 8-100 (107)
204 1wgd_A Homocysteine-responsive 98.3 2E-06 6.7E-11 62.5 7.1 73 3-75 5-84 (93)
205 2ojr_A Ubiquitin; lanthide-bin 98.3 4E-06 1.4E-10 63.0 8.7 73 3-75 33-106 (111)
206 1yx5_B Ubiquitin; proteasome, 98.3 3.7E-06 1.3E-10 61.7 8.3 71 6-76 1-72 (98)
207 2daf_A FLJ35834 protein; hypot 98.3 3.2E-06 1.1E-10 62.7 7.7 77 1-77 11-89 (118)
208 3u30_A Ubiquitin, linear DI-ub 98.2 4.2E-06 1.5E-10 68.3 8.6 74 3-76 18-92 (172)
209 2kdi_A Ubiquitin, vacuolar pro 98.2 3.5E-06 1.2E-10 63.6 7.4 73 4-76 8-81 (114)
210 2kdb_A Homocysteine-responsive 98.2 3.1E-06 1E-10 61.9 6.8 72 2-73 20-98 (99)
211 2fnj_B Transcription elongatio 98.2 1.2E-05 4.1E-10 60.2 9.3 72 5-76 2-80 (118)
212 2uyz_B Small ubiquitin-related 98.2 4.1E-06 1.4E-10 58.8 6.4 71 5-75 3-74 (79)
213 1we6_A Splicing factor, putati 98.1 6.3E-06 2.2E-10 61.9 6.9 73 3-75 25-102 (111)
214 1wyw_B Ubiquitin-like protein 98.1 5.9E-06 2E-10 60.4 6.5 73 3-75 19-92 (97)
215 1wia_A Hypothetical ubiquitin- 98.1 2.2E-05 7.6E-10 57.1 9.6 72 3-77 5-78 (95)
216 3rw6_A Nuclear RNA export fact 98.1 5.1E-07 1.7E-11 78.9 0.8 61 260-321 169-233 (267)
217 3rt3_B Ubiquitin-like protein 98.1 1.3E-05 4.4E-10 64.4 8.5 73 3-75 79-152 (159)
218 3rt3_B Ubiquitin-like protein 98.1 8.1E-06 2.8E-10 65.6 7.1 71 6-76 3-76 (159)
219 3q3f_A Ribonuclease/ubiquitin 98.1 1E-05 3.5E-10 66.4 7.6 72 5-76 105-177 (189)
220 1we7_A SF3A1 protein; structur 98.1 1.8E-05 6.1E-10 59.8 8.5 73 3-75 23-106 (115)
221 3e4g_A ATP synthase subunit S, 98.0 2.5E-06 8.5E-11 69.4 3.6 86 239-324 62-156 (176)
222 3l0w_B Monoubiquitinated proli 98.0 1.3E-05 4.4E-10 64.9 7.8 71 6-76 1-72 (169)
223 2kjr_A CG11242; UBL, ubiquitin 98.0 2.1E-05 7.1E-10 57.1 8.1 73 3-75 13-94 (95)
224 1v6e_A Cytoskeleton-associated 98.0 1.9E-05 6.6E-10 57.4 7.8 74 4-77 6-88 (95)
225 4ajy_B Transcription elongatio 98.0 1.5E-05 5.3E-10 59.4 7.2 70 6-75 3-79 (118)
226 3b1l_X E3 ubiquitin-protein li 97.3 7.2E-07 2.5E-11 62.2 0.0 68 6-73 1-69 (76)
227 2kj6_A Tubulin folding cofacto 98.0 1.9E-05 6.5E-10 57.4 7.5 75 2-76 11-95 (97)
228 3rw6_A Nuclear RNA export fact 98.0 9.3E-06 3.2E-10 70.9 6.2 107 114-222 136-258 (267)
229 4dbg_A Ranbp-type and C3HC4-ty 97.9 5.2E-05 1.8E-09 55.6 8.7 71 5-75 24-98 (105)
230 1v2y_A 3300001G02RIK protein; 97.9 1.9E-05 6.5E-10 58.2 6.2 75 3-77 5-96 (105)
231 3rfe_A Platelet glycoprotein I 97.9 1.9E-05 6.6E-10 61.1 6.6 59 264-324 11-71 (130)
232 3b08_A Polyubiquitin-C, ubiqui 97.9 2.7E-05 9.1E-10 62.0 7.5 71 6-76 1-72 (152)
233 2gow_A HCG-1 protein, ubiquiti 97.9 5.9E-05 2E-09 57.4 8.3 67 4-70 16-91 (125)
234 3ai5_A Yeast enhanced green fl 97.8 4.5E-05 1.5E-09 67.3 8.3 72 3-74 231-303 (307)
235 3e4g_A ATP synthase subunit S, 97.8 1.4E-06 4.8E-11 70.9 -1.2 79 260-338 60-145 (176)
236 3u5e_m 60S ribosomal protein L 97.8 2.3E-06 7.8E-11 66.1 0.0 70 6-75 1-71 (128)
237 4b6w_A Tubulin-specific chaper 97.8 8.7E-05 3E-09 52.7 8.2 72 5-76 2-83 (86)
238 1se9_A Ubiquitin family; ubiqu 97.8 0.00013 4.5E-09 55.2 9.6 67 2-68 13-88 (126)
239 1t0y_A Tubulin folding cofacto 97.8 6.4E-05 2.2E-09 57.3 7.9 76 3-78 4-88 (122)
240 1pgv_A TMD-1, tropomodulin TMD 97.8 3.8E-05 1.3E-09 63.6 6.8 111 212-322 38-171 (197)
241 1wgh_A Ubiquitin-like 3, HCG-1 97.8 0.00014 4.9E-09 54.5 9.3 66 4-69 15-89 (116)
242 3b08_A Polyubiquitin-C, ubiqui 97.8 7.9E-05 2.7E-09 59.2 8.4 72 4-75 75-147 (152)
243 3u30_A Ubiquitin, linear DI-ub 97.8 6.7E-05 2.3E-09 61.0 7.8 71 4-74 95-166 (172)
244 1oqy_A HHR23A, UV excision rep 97.7 4.9E-05 1.7E-09 69.0 7.1 75 2-76 4-82 (368)
245 1pgv_A TMD-1, tropomodulin TMD 97.7 4.4E-05 1.5E-09 63.2 5.8 85 211-295 66-168 (197)
246 2dzj_A Synaptic glycoprotein S 97.7 5.4E-05 1.8E-09 54.1 5.3 70 4-73 9-85 (88)
247 3u5c_f 40S ribosomal protein S 97.7 5.5E-06 1.9E-10 65.6 0.0 70 6-75 1-71 (152)
248 1wf9_A NPL4 family protein; be 97.5 0.00021 7.2E-09 53.0 6.6 74 3-76 5-94 (107)
249 1wjn_A Tubulin-folding protein 97.4 0.0008 2.7E-08 48.9 8.5 76 1-76 5-92 (97)
250 2kzr_A Ubiquitin thioesterase 97.3 0.00035 1.2E-08 49.6 5.7 71 6-76 1-77 (86)
251 2xzm_9 RPS31E; ribosome, trans 97.3 3.9E-05 1.3E-09 62.5 0.0 56 6-61 1-57 (189)
252 2io0_B Small ubiquitin-related 97.2 0.0014 4.9E-08 46.8 7.5 76 1-76 1-77 (91)
253 2io1_B Small ubiquitin-related 97.0 0.0018 6.1E-08 46.6 6.9 72 4-75 6-78 (94)
254 1wm3_A Ubiquitin-like protein 97.0 0.0034 1.1E-07 42.7 7.5 68 6-73 2-70 (72)
255 3a4r_A Nfatc2-interacting prot 97.0 0.0038 1.3E-07 43.3 7.8 72 3-74 5-78 (79)
256 3rfe_A Platelet glycoprotein I 96.7 0.0037 1.3E-07 48.0 6.3 54 123-179 12-68 (130)
257 2d07_B Ubiquitin-like protein 96.3 0.016 5.5E-07 41.5 7.4 71 4-74 16-87 (93)
258 1wz0_A Ubiquitin-like protein 96.2 0.016 5.5E-07 42.4 6.9 71 4-74 23-94 (104)
259 2k8h_A Small ubiquitin protein 96.0 0.012 4.2E-07 43.4 5.6 72 4-75 25-97 (110)
260 2eke_C Ubiquitin-like protein 95.9 0.03 1E-06 41.0 7.1 72 3-74 29-100 (106)
261 3kyd_D Small ubiquitin-related 94.0 0.22 7.5E-06 36.9 7.3 71 4-74 39-110 (115)
262 3pge_A SUMO-modified prolifera 93.1 0.32 1.1E-05 39.8 7.6 73 4-76 28-100 (200)
263 4efo_A Serine/threonine-protei 92.9 0.36 1.2E-05 34.2 6.7 50 13-62 22-71 (94)
264 3tix_A Ubiquitin-like protein 92.5 0.35 1.2E-05 39.0 6.8 73 4-76 56-128 (207)
265 2pjh_A Protein NPL4, nuclear p 92.0 0.1 3.5E-06 36.0 2.9 49 5-53 4-52 (80)
266 2jxx_A Nfatc2-interacting prot 87.9 3.3 0.00011 29.5 8.0 72 3-74 23-96 (97)
267 2l76_A Nfatc2-interacting prot 85.0 4.2 0.00014 28.6 7.1 73 3-75 19-91 (95)
268 2lz0_A Uncharacterized protein 82.2 1.3 4.5E-05 31.8 3.8 48 128-176 5-53 (100)
269 3uf8_A Ubiquitin-like protein 81.6 4.1 0.00014 33.6 7.0 74 3-76 19-92 (209)
270 2lz0_A Uncharacterized protein 81.1 1.7 5.7E-05 31.2 4.0 39 278-317 14-52 (100)
271 2bps_A YUKD protein; ubiquitin 76.6 6.2 0.00021 27.0 5.5 69 5-73 4-80 (81)
272 2al3_A TUG long isoform; TUG U 76.5 9.5 0.00032 26.6 6.4 74 6-79 10-84 (90)
273 3v7o_A Minor nucleoprotein VP3 74.3 0.64 2.2E-05 38.1 0.0 71 4-74 20-90 (227)
274 1vd2_A Protein kinase C, IOTA 68.3 12 0.0004 26.1 5.4 40 3-42 4-43 (89)
275 3ix6_A TS, tsase, thymidylate 59.2 2 6.7E-05 38.5 0.0 71 4-74 20-90 (360)
276 3goe_A DNA repair protein RAD6 57.9 40 0.0014 22.7 7.8 69 6-74 10-80 (82)
277 1oey_A P67-PHOX, neutrophil cy 57.8 25 0.00086 24.0 5.4 48 3-51 3-50 (83)
278 4da1_A Protein phosphatase 1K, 44.5 4.7 0.00016 36.7 0.0 71 4-74 29-99 (389)
279 2dzk_A UBX domain-containing p 25.7 1.8E+02 0.0062 20.6 7.5 72 4-75 12-89 (109)
280 3qx1_A FAS-associated factor 1 24.5 1.6E+02 0.0055 19.6 7.6 69 4-73 6-80 (84)
281 1ip9_A BEM1 protein; ubiquitin 23.8 96 0.0033 21.2 3.8 37 4-40 11-47 (85)
282 1wj4_A KIAA0794 protein; UBX d 22.1 2.4E+02 0.008 20.6 6.8 69 4-73 42-116 (124)
No 1
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=220.74 Aligned_cols=228 Identities=20% Similarity=0.328 Sum_probs=207.1
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccc-cccCCCCCCEEE
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTGLKKLL 172 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~ 172 (363)
...++.+.+.++.+..+....|..++.|++|++++|.++.++...|..+++|++|+|++|+++.++. .|..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4568899999999999988899999999999999999999999999999999999999999998865 588999999999
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCC-cCCCCC-ccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcC
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRN-CLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRI 250 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i 250 (363)
+++|.+.. ++...|..+++|++|++++| .+..++ ..+..+++|++|++++|.++.+|. +..+++|+.|++++|.+
T Consensus 143 L~~N~i~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIES--IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCC
T ss_pred CCCCcccc--cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCcc
Confidence 99999985 45457899999999999985 677776 468889999999999999999874 78899999999999999
Q ss_pred ccC-CccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 251 SFL-PESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 251 ~~~-~~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
+.+ +..+..+++|+.|++++|.++.+ +..+..+++|+.|+|++|+++.++...|..+++|+.|+|++|++.|++
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 976 46789999999999999999977 556889999999999999999999999999999999999999999876
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=223.09 Aligned_cols=279 Identities=19% Similarity=0.246 Sum_probs=195.8
Q ss_pred CCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccCcccCCCccccccCCCcccccccccccccccCCCCChHHhh
Q 017986 39 NVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRKTDRVRDMKMVPVGKTSSERW 118 (363)
Q Consensus 39 ~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 118 (363)
++++..+.+.+.+..+........ .....++.+...+.. ............+.++.+.+.++.+..+....|..+
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEF---ASFPHLEELELNENI--VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTT---TTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCCcEEECCCCccceECHhHc---cCCCCCCEEECCCCc--cCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 566677788877766654322222 222223333333321 111222334456678888888888888777777888
Q ss_pred cccceeecccccCccCChhhhhcCCceeEEEccCCcCccc-cccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEE
Q 017986 119 KATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV-PDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVL 197 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L 197 (363)
+.|++|++++|.+..+++..|..+++|++|++++|.+..+ +..|..+++|+.|++++|.+.. ++...+..+++|+.|
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVL 181 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS--CCHHHHTTCTTCCEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc--cChhHhcccCCCcEE
Confidence 8888888888888887777777788888888888888766 4467788888888888888774 454567777888888
Q ss_pred EcCCCcCCCCC-ccccCCC------------------------CCCEEEcccCcCCCcc-hhhcCCCCCCEEeccCCcCc
Q 017986 198 SISRNCLNSLP-GILGHLT------------------------ALQHLDVSNNKLTTLP-TEIGLLSKLEVLKANNNRIS 251 (363)
Q Consensus 198 ~l~~n~l~~l~-~~l~~l~------------------------~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~i~ 251 (363)
++++|.+..++ ..+..++ +|++|++++|.++.+| ..+..+++|+.|++++|.++
T Consensus 182 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 88777776553 2344444 4555555566666665 34677788888888888887
Q ss_pred cCCc-cccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 252 FLPE-SIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 252 ~~~~-~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
.++. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+++..|..+++|+.|++++|+++|++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 6653 467778888888888888866 566778888888888888888888887888888888888888888764
No 3
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=5.1e-26 Score=213.18 Aligned_cols=231 Identities=22% Similarity=0.270 Sum_probs=171.5
Q ss_pred cCCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCC
Q 017986 90 AQSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGL 168 (363)
Q Consensus 90 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L 168 (363)
.....+.++.+.+.++.+..+....+..++.|++|++++|.++.+|...|..+++|++|++++|+++.++ ..+..+++|
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 4456677888888888888888778888888888888888888888888888888888888888888764 457788888
Q ss_pred CEEEcCCCCCCCCCCChHhhcC-------------------------------------CCCcCEEEcCCCcCCCCCccc
Q 017986 169 KKLLLDANDLSNDSISWVQLAK-------------------------------------LKHLTVLSISRNCLNSLPGIL 211 (363)
Q Consensus 169 ~~L~L~~n~~~~~~~~~~~~~~-------------------------------------l~~L~~L~l~~n~l~~l~~~l 211 (363)
++|++++|.++.. +...+.. .++|+.|++++|.++..+ .+
T Consensus 168 ~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l 244 (390)
T 3o6n_A 168 QNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WL 244 (390)
T ss_dssp CEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GG
T ss_pred CEEECCCCcCCcc--ccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HH
Confidence 8888888887642 2111111 123444444444444332 35
Q ss_pred cCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEE
Q 017986 212 GHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALH 290 (363)
Q Consensus 212 ~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~ 290 (363)
..+++|++|++++|.++.+ |..+..+++|+.|++++|.++.++..+..+++|++|++++|.+..+|..+..+++|+.|+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEE
Confidence 6677788888888877765 566777888888888888888777666777888888888888888877777788888888
Q ss_pred CCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhh
Q 017986 291 LDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALR 326 (363)
Q Consensus 291 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 326 (363)
+++|.++.++ +..+++|+.|++++|++++++..
T Consensus 325 L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 325 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CCCCccceeC---chhhccCCEEEcCCCCccchhHH
Confidence 8888888775 46678888888888888887543
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.9e-26 Score=220.37 Aligned_cols=228 Identities=20% Similarity=0.302 Sum_probs=206.9
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccccc-ccCCCCCCEEE
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQ-IDGLTGLKKLL 172 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~-~~~l~~L~~L~ 172 (363)
...++.+.+.++.+..+....|..++.|++|++++|.++.++...|..+++|++|+|++|+++.++.. |..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35789999999999999888999999999999999999999999999999999999999999988654 88899999999
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCC-cCCCCC-ccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcC
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRN-CLNSLP-GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRI 250 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i 250 (363)
+++|.+.. ++...|..+++|+.|++++| .+..++ ..+..+++|++|++++|.++.+| .+..+++|+.|++++|.+
T Consensus 154 L~~N~l~~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIES--IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCCE--ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred CCCCCcce--eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence 99999984 55567899999999999984 677776 46888999999999999999886 478899999999999999
Q ss_pred ccC-CccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 251 SFL-PESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 251 ~~~-~~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
+.+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|+|++|+++.++...|..+++|+.|++++|++.|++
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 976 45789999999999999999977 567889999999999999999999999999999999999999999886
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=4.9e-26 Score=217.43 Aligned_cols=288 Identities=18% Similarity=0.217 Sum_probs=195.7
Q ss_pred hccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccCcccCCCccccccCCCcccccccccccccccCCCCC
Q 017986 34 LLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRKTDRVRDMKMVPVGKT 113 (363)
Q Consensus 34 l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 113 (363)
+..+..+++..+.+.+.+..+.+........+. .++.+...+... .+..........+.++.+.+.++.+..+...
T Consensus 22 l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~---~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 22 LHQVPELPAHVNYVDLSLNSIAELNETSFSRLQ---DLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp CSSCCCCCTTCCEEECCSSCCCEECTTTTSSCT---TCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred cccCCCCCCccCEEEecCCccCcCChhHhccCc---cccEEECcCCcc-cceECcccccccccCCEEeCCCCccCccChh
Confidence 334444566778888877766543222222222 233333332211 1112223344566777777877777777677
Q ss_pred hHHhhcccceeecccccCcc--CChhhhhcCCceeEEEccCCcCccc-ccc-ccCCCCCCEEEcCCCCCCCCCCChH-h-
Q 017986 114 SSERWKATGVIALAEHNLKA--IPDEVWDCSPFIRVLDIRTNSIQCV-PDQ-IDGLTGLKKLLLDANDLSNDSISWV-Q- 187 (363)
Q Consensus 114 ~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~~L~~L~L~~n~i~~i-~~~-~~~l~~L~~L~L~~n~~~~~~~~~~-~- 187 (363)
.+..++.|++|++++|.++. .+...+..+++|++|++++|+++.+ |.. +..+++|++|++++|.+........ .
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 177 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc
Confidence 77777777888887777765 2233366667777777777777765 333 6677777777777776654211100 0
Q ss_pred ------------------------------hcCCC---------------------------------------------
Q 017986 188 ------------------------------LAKLK--------------------------------------------- 192 (363)
Q Consensus 188 ------------------------------~~~l~--------------------------------------------- 192 (363)
+..++
T Consensus 178 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 257 (455)
T 3v47_A 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257 (455)
T ss_dssp TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT
T ss_pred ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc
Confidence 01123
Q ss_pred ------------------CcCEEEcCCCcCCCC-CccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCcc
Q 017986 193 ------------------HLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISF 252 (363)
Q Consensus 193 ------------------~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~ 252 (363)
+|+.|++++|.+..+ +..+..+++|++|++++|.++.+ +..+..+++|+.|++++|.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 445555555554433 45577788899999999988876 5577888999999999999886
Q ss_pred CC-ccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhh
Q 017986 253 LP-ESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDAL 325 (363)
Q Consensus 253 ~~-~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 325 (363)
++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|+++.++...|..+++|+.|++++|+++|+++
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 64 5678899999999999999877 6678889999999999999999998888999999999999999998754
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=222.84 Aligned_cols=245 Identities=21% Similarity=0.253 Sum_probs=171.6
Q ss_pred cCCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccc-cccccCCCCC
Q 017986 90 AQSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV-PDQIDGLTGL 168 (363)
Q Consensus 90 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L 168 (363)
.....+.++.+.+.++.+..+....|..++.|++|++++|.++.+|...|..+++|++|+|++|++..+ +..|..+++|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 445667788888888888888788888888899999999988888888888888899999998888866 5567888899
Q ss_pred CEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccCcCCCcc-hhhcCCCCCCEEecc
Q 017986 169 KKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLP-TEIGLLSKLEVLKAN 246 (363)
Q Consensus 169 ~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~ 246 (363)
++|++++|.+.. +....|.++++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++ ..+..+++|+.|+++
T Consensus 131 ~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 131 KSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp CEEEECCTTCCE--ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred CEEECCCCccce--eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 999999888874 33346788889999999999888876 45778888999999988887653 345555555555555
Q ss_pred C------------------------CcCccCCc-cccCCCCCcEEECCCCCCCCCC-hhccCCCCCCEEECCCCCCCCCC
Q 017986 247 N------------------------NRISFLPE-SIGNCTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLP 300 (363)
Q Consensus 247 ~------------------------n~i~~~~~-~~~~~~~L~~L~L~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~~~ 300 (363)
+ |.++.+|. .+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.++.++
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence 4 44444442 3455555566666655555443 23455556666666666666555
Q ss_pred hhhhhCCCCCCEEEccCCccchhhhhcccCchHHHH
Q 017986 301 TTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 301 ~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~ 336 (363)
+..|..+++|+.|++++|.++......+..+++|+.
T Consensus 289 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 555566666666666666666555555555555443
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1e-25 Score=202.16 Aligned_cols=222 Identities=27% Similarity=0.333 Sum_probs=191.9
Q ss_pred ccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccc-cccccCCCCCCEEEcCCCC
Q 017986 99 TDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV-PDQIDGLTGLKKLLLDAND 177 (363)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~L~~n~ 177 (363)
.+...+..+..++. ...+.+++|++++|.++.++...|..+++|++|++++|.++.+ +..+..+++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSSCCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCcccCCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34444444444432 2246899999999999999988889999999999999999977 6678999999999999997
Q ss_pred -CCCCCCChHhhcCCCCcCEEEcCCCcCCCC-CccccCCCCCCEEEcccCcCCCcch-hhcCCCCCCEEeccCCcCccCC
Q 017986 178 -LSNDSISWVQLAKLKHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISFLP 254 (363)
Q Consensus 178 -~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~i~~~~ 254 (363)
+.. +....+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++
T Consensus 92 ~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 92 QLRS--VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TCCC--CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred Cccc--cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 664 4335688999999999999999987 5678889999999999999998864 4788999999999999999887
Q ss_pred c-cccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhh
Q 017986 255 E-SIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDAL 325 (363)
Q Consensus 255 ~-~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 325 (363)
. .+..+++|++|++++|.+..+ |..+..+++|+.|++++|.++.+++..+..+++|+.|++++|++++++.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 5 488899999999999999977 7788999999999999999999999889999999999999999998753
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.1e-26 Score=206.77 Aligned_cols=230 Identities=19% Similarity=0.250 Sum_probs=201.0
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCC--hhhhhcCCceeEEEccCCcCccccccccCCCCCCEE
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIP--DEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKL 171 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~--~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L 171 (363)
...++.+.+.++.+..+....+..++.|++|++++|.++.+. ...+..+++|++|++++|.+..++..+..+++|++|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 357899999999999888888999999999999999998663 233445789999999999999998889999999999
Q ss_pred EcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCC-CccccCCCCCCEEEcccCcCCC--cchhhcCCCCCCEEeccCC
Q 017986 172 LLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTT--LPTEIGLLSKLEVLKANNN 248 (363)
Q Consensus 172 ~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~i~~--l~~~~~~~~~L~~L~l~~n 248 (363)
++++|.+.... ....+..+++|++|++++|.+..+ +..+..+++|++|++++|.+.. +|..+..+++|+.|++++|
T Consensus 107 ~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESST-TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccc-cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 99999988632 224688899999999999998855 5668889999999999999985 6788899999999999999
Q ss_pred cCccC-CccccCCCCCcEEECCCCCCCCCCh-hccCCCCCCEEECCCCCCCCCChhhhhCCC-CCCEEEccCCccchhh
Q 017986 249 RISFL-PESIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTLFSKCV-QLSTLELHNTEITMDA 324 (363)
Q Consensus 249 ~i~~~-~~~~~~~~~L~~L~L~~n~l~~l~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~ 324 (363)
.++.+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.++..++..+..++ +|+.|++++|+++|++
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 99977 5678899999999999999998854 678899999999999999988877788885 9999999999999875
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.2e-25 Score=205.80 Aligned_cols=227 Identities=21% Similarity=0.303 Sum_probs=156.0
Q ss_pred CCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccc-cccCCCCCC
Q 017986 91 QSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTGLK 169 (363)
Q Consensus 91 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~ 169 (363)
....+.++.+.+.++.+..+.+..+..++.|++|++++|.++.+|..++ ++|++|++++|.++.++. .+..+++|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCcccc
Confidence 3445667777777777766666666777777777777777777766554 457777777777766543 366677777
Q ss_pred EEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCC
Q 017986 170 KLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNN 248 (363)
Q Consensus 170 ~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n 248 (363)
.|++++|.+.........+..+++|++|++++|.++.+|..+. ++|++|++++|.++.+ +..+..+++|+.|++++|
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 7777777765322333456677777777777777777765433 6777777777777765 456677777777777777
Q ss_pred cCccCCc-cccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCC------CCCCEEEccCCccc
Q 017986 249 RISFLPE-SIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKC------VQLSTLELHNTEIT 321 (363)
Q Consensus 249 ~i~~~~~-~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~L~~n~i~ 321 (363)
.++.++. .+..+++|++|++++|.+..+|..+..+++|++|++++|.++.++...|... +.++.+++++|++.
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 7775543 5667777777777777777777777777777777777777777776666432 56777777777775
Q ss_pred h
Q 017986 322 M 322 (363)
Q Consensus 322 ~ 322 (363)
.
T Consensus 307 ~ 307 (330)
T 1xku_A 307 Y 307 (330)
T ss_dssp G
T ss_pred c
Confidence 4
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.2e-26 Score=211.14 Aligned_cols=240 Identities=16% Similarity=0.194 Sum_probs=203.5
Q ss_pred ccccccccccccccC--CCCChHHhhcccceeeccc-ccCccCChhhhhcCCceeEEEccCCcCc-cccccccCCCCCCE
Q 017986 95 TSRKTDRVRDMKMVP--VGKTSSERWKATGVIALAE-HNLKAIPDEVWDCSPFIRVLDIRTNSIQ-CVPDQIDGLTGLKK 170 (363)
Q Consensus 95 ~~l~~l~~~~~~~~~--~~~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~ 170 (363)
..++.+.+.++.+.+ .....+..++.|++|++++ |.+....+..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 357888888888876 5567899999999999995 8887444445677899999999999998 77888999999999
Q ss_pred EEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCC-CCCccccCCC-CCCEEEcccCcCC-CcchhhcCCCCCCEEeccC
Q 017986 171 LLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLN-SLPGILGHLT-ALQHLDVSNNKLT-TLPTEIGLLSKLEVLKANN 247 (363)
Q Consensus 171 L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~-~L~~L~l~~n~i~-~l~~~~~~~~~L~~L~l~~ 247 (363)
|++++|.+... ++ ..+..+++|++|++++|.++ .+|..+..++ .|++|++++|.++ .+|..+..+. |+.|++++
T Consensus 130 L~Ls~N~l~~~-~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGT-LP-PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESC-CC-GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EeCCCCccCCc-CC-hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 99999998852 22 46889999999999999998 7888888887 9999999999998 5688888776 99999999
Q ss_pred CcCc-cCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhh
Q 017986 248 NRIS-FLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALR 326 (363)
Q Consensus 248 n~i~-~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 326 (363)
|.+. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.++...+..+..+++|+.|++++|++++..+.
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 9998 455678999999999999999996655688899999999999999955556689999999999999999988766
Q ss_pred cccCchHHHHHH
Q 017986 327 QLEGWDDFDKRR 338 (363)
Q Consensus 327 ~l~~l~~l~~~~ 338 (363)
. ..+++|+.+.
T Consensus 287 ~-~~l~~L~~l~ 297 (313)
T 1ogq_A 287 G-GNLQRFDVSA 297 (313)
T ss_dssp S-TTGGGSCGGG
T ss_pred C-ccccccChHH
Confidence 5 6667666543
No 11
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=2.1e-26 Score=211.10 Aligned_cols=238 Identities=21% Similarity=0.272 Sum_probs=138.4
Q ss_pred CCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccc-cccCCCCCCE
Q 017986 92 SPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTGLKK 170 (363)
Q Consensus 92 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~ 170 (363)
...+.++.+.+.++.+..+....+..++.|++|++++|.++.+|..++ ++|++|++++|+++.++. .+..+++|++
T Consensus 75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 344455555555555555555555555566666666666655555443 455666666665555543 2555566666
Q ss_pred EEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcc-hhhcCCCCCCEEeccCCc
Q 017986 171 LLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLP-TEIGLLSKLEVLKANNNR 249 (363)
Q Consensus 171 L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~ 249 (363)
|++++|.+.........+..+ +|+.|++++|.++.+|..+. ++|++|++++|.++.++ ..+..+++|+.|++++|.
T Consensus 152 L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 152 IEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp EECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred EECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 666666554211222234444 56666666666665554332 46666666666666553 455666677777777777
Q ss_pred CccCCc-cccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCC------CCCCEEEccCCccc-
Q 017986 250 ISFLPE-SIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKC------VQLSTLELHNTEIT- 321 (363)
Q Consensus 250 i~~~~~-~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l------~~L~~L~L~~n~i~- 321 (363)
+..++. .+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.++...|..+ +.|+.|++++|+++
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 665543 4666667777777777777666666666777777777777776666555442 45667777777665
Q ss_pred -hhhhhcccCchHHH
Q 017986 322 -MDALRQLEGWDDFD 335 (363)
Q Consensus 322 -~~~~~~l~~l~~l~ 335 (363)
+..+..+..++.|+
T Consensus 309 ~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 309 WEVQPATFRCVTDRL 323 (332)
T ss_dssp GGSCGGGGTTBCCST
T ss_pred cccCcccccccchhh
Confidence 33334444444443
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3.1e-26 Score=218.79 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=90.1
Q ss_pred ccCCCccccccccccccccc-CCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcc-cccc--ccC
Q 017986 89 EAQSPITSRKTDRVRDMKMV-PVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQC-VPDQ--IDG 164 (363)
Q Consensus 89 ~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~-i~~~--~~~ 164 (363)
......+.++.+.+.++.+. .+....+..++.|++|++++|.+..+++..+..+++|++|++++|+++. ++.. +..
T Consensus 48 ~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 127 (455)
T 3v47_A 48 TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127 (455)
T ss_dssp TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT
T ss_pred hHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC
Confidence 34456777888888888775 4556678888888899999888888877777888889999998888874 3333 778
Q ss_pred CCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCC
Q 017986 165 LTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSL 207 (363)
Q Consensus 165 l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 207 (363)
+++|++|++++|.+.... +...+.++++|++|++++|.+..+
T Consensus 128 l~~L~~L~L~~n~l~~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQ-PASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp CTTCCEEECCSSBCCSCC-CCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cccCCEEECCCCccCccC-cccccCCCCcccEEeCCCCccccc
Confidence 888999999988887532 223377888899999988887754
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.1e-26 Score=207.71 Aligned_cols=213 Identities=24% Similarity=0.278 Sum_probs=127.4
Q ss_pred cccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEE
Q 017986 119 KATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLS 198 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~ 198 (363)
..++.|++++|.++.+|..++. +++|++|++++|.++.+|..+..+++|++|++++|.+.. ++ ..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~-l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~--lp-~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRA--LP-ASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGG-GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCC--CC-GGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhh-CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcccc--Cc-HHHhcCcCCCEEE
Confidence 4556666666666666655444 456666666666666666666666666666666666652 33 2455666666666
Q ss_pred cCCCc-CCCCCcccc---------CCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEEC
Q 017986 199 ISRNC-LNSLPGILG---------HLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDL 268 (363)
Q Consensus 199 l~~n~-l~~l~~~l~---------~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L 268 (363)
+++|. +..+|..+. .+++|++|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|++|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 66643 334444333 25666666666666666666666666666666666666666655666666666666
Q ss_pred CCCCCC-CCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHH
Q 017986 269 SSNLLS-ELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335 (363)
Q Consensus 269 ~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~ 335 (363)
++|.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|++.+..+..+..++++.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 665544 4455566666666666666654433333356666666666666666666666655555544
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=5e-25 Score=201.77 Aligned_cols=229 Identities=19% Similarity=0.308 Sum_probs=203.3
Q ss_pred ccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcC
Q 017986 95 TSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLD 174 (363)
Q Consensus 95 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~ 174 (363)
+.++.+.+.++.+..+....+..++.|++|++++|.++.+++..+..+++|++|++++|+++.+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 568889999999999988889999999999999999999977788889999999999999999887654 799999999
Q ss_pred CCCCCCCCCChHhhcCCCCcCEEEcCCCcCCC---CCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCc
Q 017986 175 ANDLSNDSISWVQLAKLKHLTVLSISRNCLNS---LPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS 251 (363)
Q Consensus 175 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~ 251 (363)
+|.+.. +....+.++++|+.|++++|.+.. .+..+..+++|++|++++|.++.+|..+. ++|+.|++++|.++
T Consensus 130 ~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 130 ENEITK--VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp SSCCCB--BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred CCcccc--cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC
Confidence 999984 565678999999999999999873 45678889999999999999998877554 79999999999999
Q ss_pred cC-CccccCCCCCcEEECCCCCCCCCC-hhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhccc
Q 017986 252 FL-PESIGNCTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLE 329 (363)
Q Consensus 252 ~~-~~~~~~~~~L~~L~L~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~ 329 (363)
.+ +..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|+|++.....+.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCccChhhcC
Confidence 66 467899999999999999999775 4688999999999999999999865 68899999999999999988766664
Q ss_pred C
Q 017986 330 G 330 (363)
Q Consensus 330 ~ 330 (363)
.
T Consensus 285 ~ 285 (330)
T 1xku_A 285 P 285 (330)
T ss_dssp C
T ss_pred C
Confidence 3
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-25 Score=209.83 Aligned_cols=234 Identities=18% Similarity=0.215 Sum_probs=174.2
Q ss_pred CCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccccc-ccCCCCCCE
Q 017986 92 SPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQ-IDGLTGLKK 170 (363)
Q Consensus 92 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~-~~~l~~L~~ 170 (363)
..++.++.+.+.++.+..+....+..++.|++|++++|.++.+++..+..+++|++|++++|.++.+|.. |..+++|++
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 3456788888888888888777888888888888888888888888888888888889988888888765 578888889
Q ss_pred EEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCC-----------------------------------
Q 017986 171 LLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLT----------------------------------- 215 (363)
Q Consensus 171 L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~----------------------------------- 215 (363)
|++++|.+.. +....+..+++|++|++++|.++.++ +..++
T Consensus 146 L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 146 LSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp EECCSSCCCB--CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEE
T ss_pred EECCCCccCc--cChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecc
Confidence 9998888874 33345788888888888888877553 11222
Q ss_pred -----CCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccC-CccccCCCCCcEEECCCCCCCCCChhccCCCCCCEE
Q 017986 216 -----ALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL-PESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKAL 289 (363)
Q Consensus 216 -----~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L 289 (363)
+|+.|++++|.++.. +.+..+++|+.|++++|.+..+ |..+..+++|++|++++|.++.++..+..+++|++|
T Consensus 222 ~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 222 GPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300 (390)
T ss_dssp CCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEE
T ss_pred ccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEE
Confidence 344444444444443 3456677888888888887755 456777888888888888888777666777888888
Q ss_pred ECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCc
Q 017986 290 HLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGW 331 (363)
Q Consensus 290 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l 331 (363)
++++|.++.++.. +..+++|+.|++++|+++...+..+..+
T Consensus 301 ~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~L 341 (390)
T 3o6n_A 301 DLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHTL 341 (390)
T ss_dssp ECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTCCC
T ss_pred ECCCCcceecCcc-ccccCcCCEEECCCCccceeCchhhccC
Confidence 8888888877765 5667888888888888877654444333
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.7e-26 Score=213.66 Aligned_cols=227 Identities=17% Similarity=0.268 Sum_probs=131.9
Q ss_pred cccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccccc-ccCCCCCCEEEcC
Q 017986 96 SRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQ-IDGLTGLKKLLLD 174 (363)
Q Consensus 96 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~-~~~l~~L~~L~L~ 174 (363)
.++.+.+.++.+..+....+..++.|++|++++|.++.++...|..+++|++|++++|+++.++.. +..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 445555555555554444455555555555555555555544445555555555555555544433 4455555555555
Q ss_pred CCCCCCCCCCh-HhhcCCCCcCEEEcCCC-cCCCCC-ccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcC
Q 017986 175 ANDLSNDSISW-VQLAKLKHLTVLSISRN-CLNSLP-GILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRI 250 (363)
Q Consensus 175 ~n~~~~~~~~~-~~~~~l~~L~~L~l~~n-~l~~l~-~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i 250 (363)
+|.+.. ++. ..+..+++|++|++++| .++.++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+
T Consensus 133 ~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 133 GNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp TCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 555543 221 23444555555555555 344332 3344455555555555555443 34445555555555555555
Q ss_pred ccCCcc-ccCCCCCcEEECCCCCCCC--------------------------------CChhccCCCCCCEEECCCCCCC
Q 017986 251 SFLPES-IGNCTSLIEIDLSSNLLSE--------------------------------LPVTLENLHYLKALHLDNNALK 297 (363)
Q Consensus 251 ~~~~~~-~~~~~~L~~L~L~~n~l~~--------------------------------l~~~~~~~~~L~~L~L~~n~l~ 297 (363)
..++.. +..+++|+.|++++|.++. +|..+..+++|+.|++++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 444332 2234455555555554443 4556778999999999999999
Q ss_pred CCChhhhhCCCCCCEEEccCCccchhh
Q 017986 298 SLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 298 ~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
.++..+|..+++|+.|++++|+++|++
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 999988899999999999999999865
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.3e-25 Score=218.13 Aligned_cols=227 Identities=22% Similarity=0.282 Sum_probs=170.5
Q ss_pred cCCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCC
Q 017986 90 AQSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGL 168 (363)
Q Consensus 90 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L 168 (363)
.....+.++.|.+.++.+..+....|..++.|++|++++|.++.+|..+|..+++|++|++++|.++.++ ..|..+++|
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 4456667888888888888887777888888888888888888888887777888888888888888664 457788888
Q ss_pred CEEEcCCCCCCCCCCChHhhcCCCC----------------------------------------cCEEEcCCCcCCCCC
Q 017986 169 KKLLLDANDLSNDSISWVQLAKLKH----------------------------------------LTVLSISRNCLNSLP 208 (363)
Q Consensus 169 ~~L~L~~n~~~~~~~~~~~~~~l~~----------------------------------------L~~L~l~~n~l~~l~ 208 (363)
++|++++|.+... + +..+++ |+.|++++|.++..
T Consensus 174 ~~L~L~~N~l~~~--~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~- 247 (597)
T 3oja_B 174 QNLQLSSNRLTHV--D---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT- 247 (597)
T ss_dssp CEEECTTSCCSBC--C---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-
T ss_pred cEEECcCCCCCCc--C---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-
Confidence 8888888877642 2 122222 33333344433332
Q ss_pred ccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCC
Q 017986 209 GILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLK 287 (363)
Q Consensus 209 ~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~ 287 (363)
..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 2356677888888888888765 667788888888888888888777777778888888888888888887777888888
Q ss_pred EEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhh
Q 017986 288 ALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDAL 325 (363)
Q Consensus 288 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 325 (363)
.|++++|.++.++ +..+++|+.|++++|+++|++.
T Consensus 328 ~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 328 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH
T ss_pred EEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH
Confidence 8888888888776 4667888888888888887653
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.2e-24 Score=200.47 Aligned_cols=270 Identities=20% Similarity=0.320 Sum_probs=161.5
Q ss_pred CCeEEEecceeecCCcccccccccCCcEEEEeeccCcccCCCccccccCCCcccccccccccccccCCCCChHHhhcccc
Q 017986 43 RGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRKTDRVRDMKMVPVGKTSSERWKATG 122 (363)
Q Consensus 43 ~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 122 (363)
..+.+.+.+..+.+...+.. + ..++.+...++.... +. .....+.++.+.+.++.+..+. .+..++.|+
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~--~---~~L~~L~l~~n~i~~--~~--~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~ 113 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEY--L---TNLEYLNLNGNQITD--IS--PLSNLVKLTNLYIGTNKITDIS--ALQNLTNLR 113 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGG--C---TTCCEEECCSSCCCC--CG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCS
T ss_pred cccEEEEeCCccccchhhhh--c---CCccEEEccCCcccc--ch--hhhcCCcCCEEEccCCcccCch--HHcCCCcCC
Confidence 56677777776665433221 2 223333333332111 11 1445677888888888777764 577888888
Q ss_pred eeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCC
Q 017986 123 VIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRN 202 (363)
Q Consensus 123 ~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n 202 (363)
+|++++|.+..++. +..+++|++|++++|........+..+++|++|++++|.+... . .+..+++|+.|++++|
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV--T--PIANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC--G--GGGGCTTCSEEECTTS
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc--h--hhccCCCCCEEEccCC
Confidence 88888888887776 5667788888888874443333467777777777777776642 1 2566777777777777
Q ss_pred cCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccC
Q 017986 203 CLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLEN 282 (363)
Q Consensus 203 ~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~ 282 (363)
.+..++. +..+++|+.+++++|.+..++. +..+++|+.|++++|.++.++. +..+++|++|++++|.++.++ .+..
T Consensus 188 ~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~ 263 (347)
T 4fmz_A 188 QIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKD 263 (347)
T ss_dssp CCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTT
T ss_pred ccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhc
Confidence 7766654 5555566666666665555433 4555566666666666555544 555556666666666555543 3455
Q ss_pred CCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHH
Q 017986 283 LHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335 (363)
Q Consensus 283 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~ 335 (363)
+++|++|++++|.++.++ .+..+++|+.|++++|++++..+..+..+++|+
T Consensus 264 l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp CTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred CCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 555556666555555552 245555555555555555555555444444443
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=4.1e-25 Score=202.54 Aligned_cols=230 Identities=20% Similarity=0.317 Sum_probs=202.3
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEc
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLL 173 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L 173 (363)
.+.++.+.+.++.+..+....+..++.|++|++++|.++.+++..+..+++|++|++++|+++.+|..+. ++|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 3578899999999988888889999999999999999999988888899999999999999999887664 89999999
Q ss_pred CCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCC---CCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcC
Q 017986 174 DANDLSNDSISWVQLAKLKHLTVLSISRNCLNS---LPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRI 250 (363)
Q Consensus 174 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i 250 (363)
++|.+.. ++...+..+++|+.|++++|.++. .+..+..+ +|++|++++|.++.+|..+. ++|+.|++++|.+
T Consensus 131 ~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRIRK--VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp CSSCCCC--CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCC
T ss_pred CCCccCc--cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcC
Confidence 9999985 444568999999999999999873 35666666 89999999999999887654 7999999999999
Q ss_pred ccCC-ccccCCCCCcEEECCCCCCCCCC-hhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcc
Q 017986 251 SFLP-ESIGNCTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQL 328 (363)
Q Consensus 251 ~~~~-~~~~~~~~L~~L~L~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l 328 (363)
..++ ..+..+++|++|++++|.+..++ ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|+|++.....+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCCCCCccChhHc
Confidence 9776 56899999999999999999885 4688999999999999999999876 7889999999999999998877766
Q ss_pred cCc
Q 017986 329 EGW 331 (363)
Q Consensus 329 ~~l 331 (363)
...
T Consensus 285 ~~~ 287 (332)
T 2ft3_A 285 CPV 287 (332)
T ss_dssp SCS
T ss_pred ccc
Confidence 543
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.6e-25 Score=202.56 Aligned_cols=227 Identities=19% Similarity=0.218 Sum_probs=195.3
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEc
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLL 173 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L 173 (363)
...++.+.+.++.+..+.. .+..++.|++|++++|.++.+|..+ ..+++|++|++++|+++.+|..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 3567889999999886654 4667999999999999999998754 5678999999999999999999999999999999
Q ss_pred CCCCCCCCCCCh-------HhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEecc
Q 017986 174 DANDLSNDSISW-------VQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKAN 246 (363)
Q Consensus 174 ~~n~~~~~~~~~-------~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~ 246 (363)
++|.+....... ..+.++++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 998776532221 1134599999999999999999988999999999999999999998889999999999999
Q ss_pred CCcCc-cCCccccCCCCCcEEECCCCCCC-CCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccch
Q 017986 247 NNRIS-FLPESIGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITM 322 (363)
Q Consensus 247 ~n~i~-~~~~~~~~~~~L~~L~L~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 322 (363)
+|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|++....+..+..+++|+.+++..+.+..
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 98876 67778999999999999998765 678889999999999999987765444568999999999999887654
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=1.5e-25 Score=221.79 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=89.1
Q ss_pred ccCCCCCCEEEcccCcCCCcc--hhhcCCCCCCEEeccCCcCcc-CCccccCCCCCcEEECCCCCCCC--CChhccCCCC
Q 017986 211 LGHLTALQHLDVSNNKLTTLP--TEIGLLSKLEVLKANNNRISF-LPESIGNCTSLIEIDLSSNLLSE--LPVTLENLHY 285 (363)
Q Consensus 211 l~~l~~L~~L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~L~~n~l~~--l~~~~~~~~~ 285 (363)
+..+++|++|++++|.+...+ ..+..+++|+.|++++|.+.. .|..+..+++|++|++++|.+.. +|..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 344445555555555444432 245556666666666666653 34456677777777777777764 4666778888
Q ss_pred CCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHHHHH
Q 017986 286 LKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDKRRR 339 (363)
Q Consensus 286 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~~~~ 339 (363)
|+.|++++|.++.+++..|..+++|+.|++++|++++..+..+..+++|+.++.
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 888888888888887777888888888888888888887777777777765433
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=4.7e-25 Score=223.90 Aligned_cols=241 Identities=22% Similarity=0.301 Sum_probs=143.4
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCc-cccccccCCCCCCEEE
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQ-CVPDQIDGLTGLKKLL 172 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~~L~ 172 (363)
.+.++.+.+.++.+.+..+..+..++.|++|++++|.++...+..+..+++|++|++++|++. .+|..+..+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 345666666666666555556666666666666666666444444555566666666666666 4455566666666666
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCC-CCCccccCCCCCCEEEcccCcCC-CcchhhcCCCCCCEEeccCCcC
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRNCLN-SLPGILGHLTALQHLDVSNNKLT-TLPTEIGLLSKLEVLKANNNRI 250 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~i~-~l~~~~~~~~~L~~L~l~~n~i 250 (363)
+++|.+.+. ++ ..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+
T Consensus 473 L~~N~l~~~-~p-~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 473 LDFNDLTGE-IP-SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCCSC-CC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred ecCCcccCc-CC-HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 666666542 22 34566666666666666666 45555666666666666666665 4455566666666666666654
Q ss_pred c-cCCcc----------------------------------------------------------------------ccC
Q 017986 251 S-FLPES----------------------------------------------------------------------IGN 259 (363)
Q Consensus 251 ~-~~~~~----------------------------------------------------------------------~~~ 259 (363)
. .+|.. +..
T Consensus 551 ~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~ 630 (768)
T 3rgz_A 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 630 (768)
T ss_dssp ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence 4 33221 222
Q ss_pred CCCCcEEECCCCCCC-CCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHH
Q 017986 260 CTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 260 ~~~L~~L~L~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~ 336 (363)
+++|+.|++++|.++ .+|..++.++.|+.|+|++|.++...+..++.+++|+.|+|++|++++..+..+..++.|+.
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 345566666666665 45556666666666666666666333344566666666666666666666665555555544
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=4.2e-24 Score=196.89 Aligned_cols=272 Identities=24% Similarity=0.305 Sum_probs=222.2
Q ss_pred CCCCeEEEecceeecCCcccccccccCCcEEEEeeccCcccCCCccccccCCCcccccccccccccccCCCCChHHhhcc
Q 017986 41 LPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRKTDRVRDMKMVPVGKTSSERWKA 120 (363)
Q Consensus 41 ~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 120 (363)
.+..+.+.+.+..+.+... +.....+..+...++.... + +.....+.++.+.+.++.+..+.. +..++.
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~L~~n~i~~--~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~ 133 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITD--I--SALQNLTNLRELYLNEDNISDISP--LANLTK 133 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC--C--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTT
T ss_pred cCCccEEEccCCccccchh-----hhcCCcCCEEEccCCcccC--c--hHHcCCCcCCEEECcCCcccCchh--hccCCc
Confidence 3477888888887776544 2233333444444432111 1 345577889999999999888764 889999
Q ss_pred cceeeccccc-CccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEc
Q 017986 121 TGVIALAEHN-LKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSI 199 (363)
Q Consensus 121 l~~L~l~~n~-i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 199 (363)
|++|++++|. +..++. +..+++|++|++++|.+..++. +..+++|+.|++++|.+.. ++ .+..+++|+.+++
T Consensus 134 L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~--~~--~~~~l~~L~~L~l 206 (347)
T 4fmz_A 134 MYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED--IS--PLASLTSLHYFTA 206 (347)
T ss_dssp CCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCC--CG--GGGGCTTCCEEEC
T ss_pred eeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccc--cc--cccCCCccceeec
Confidence 9999999995 444443 6778999999999999998765 8889999999999999885 32 3788999999999
Q ss_pred CCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChh
Q 017986 200 SRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVT 279 (363)
Q Consensus 200 ~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~ 279 (363)
++|.+..++. +..+++|++|++++|.++.++. +..+++|+.|++++|.++.+ +.+..+++|++|++++|.++.++ .
T Consensus 207 ~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~ 282 (347)
T 4fmz_A 207 YVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-V 282 (347)
T ss_dssp CSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-G
T ss_pred ccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-h
Confidence 9999998876 7889999999999999998866 88999999999999999987 46888999999999999999885 6
Q ss_pred ccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHH
Q 017986 280 LENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 280 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~ 336 (363)
+..+++|+.|++++|.++..++..+..+++|+.|++++|++++..+ +..+++|+.
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 7889999999999999999988889999999999999999998765 555555543
No 24
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-25 Score=203.57 Aligned_cols=235 Identities=17% Similarity=0.135 Sum_probs=203.6
Q ss_pred CcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEE
Q 017986 93 PITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLL 172 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~ 172 (363)
..+.++.+.+.++.+..+....+..++.|++|++++|.++.+++ +..+++|++|++++|+++.++. .++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 45678999999999999888889999999999999999987775 7788999999999999987753 48999999
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccCcCCCc-chhh-cCCCCCCEEeccCCc
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTL-PTEI-GLLSKLEVLKANNNR 249 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l-~~~~-~~~~~L~~L~l~~n~ 249 (363)
+++|.+.... ...+++|++|++++|.++.++ ..+..+++|++|++++|.++.+ +..+ ..+++|+.|++++|.
T Consensus 106 l~~n~l~~~~-----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 106 AANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CCSSCCSEEE-----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CCCCccCCcC-----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 9999988522 345789999999999999885 4678899999999999999976 4444 478999999999999
Q ss_pred CccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccc-hhhhhcc
Q 017986 250 ISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEIT-MDALRQL 328 (363)
Q Consensus 250 i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~l 328 (363)
++.++. ...+++|++|++++|.++.+|..+..+++|+.|++++|.++.++.. +..+++|+.|++++|+++ +..+..+
T Consensus 181 l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 181 IYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred Cccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHH
Confidence 998754 3458999999999999999988899999999999999999998765 788999999999999999 4556778
Q ss_pred cCchHHHHHHHH
Q 017986 329 EGWDDFDKRRRA 340 (363)
Q Consensus 329 ~~l~~l~~~~~~ 340 (363)
..++.|+.+...
T Consensus 259 ~~~~~L~~l~l~ 270 (317)
T 3o53_A 259 SKNQRVQTVAKQ 270 (317)
T ss_dssp HTCHHHHHHHHH
T ss_pred hccccceEEECC
Confidence 889999888765
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.4e-24 Score=220.48 Aligned_cols=234 Identities=21% Similarity=0.272 Sum_probs=204.7
Q ss_pred CCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCc-cccccccCCCCCC
Q 017986 91 QSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQ-CVPDQIDGLTGLK 169 (363)
Q Consensus 91 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~~L~ 169 (363)
....+.++.+.+.++.+.+..+..+..++.|++|++++|.+....+..+..+++|++|++++|+++ .+|..+..+++|+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 345678999999999999888889999999999999999998555555677899999999999998 5688899999999
Q ss_pred EEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCC-CCCccccCCCCCCEEEcccCcCC-Ccchh--------------
Q 017986 170 KLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLN-SLPGILGHLTALQHLDVSNNKLT-TLPTE-------------- 233 (363)
Q Consensus 170 ~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~i~-~l~~~-------------- 233 (363)
.|++++|.+.+. ++ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..
T Consensus 494 ~L~L~~N~l~~~-~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 494 WISLSNNRLTGE-IP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp EEECCSSCCCSC-CC-GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred EEEccCCccCCc-CC-hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 999999999863 33 46788999999999999988 77888999999999999999876 44433
Q ss_pred --------------------------------------------------------hcCCCCCCEEeccCCcCc-cCCcc
Q 017986 234 --------------------------------------------------------IGLLSKLEVLKANNNRIS-FLPES 256 (363)
Q Consensus 234 --------------------------------------------------------~~~~~~L~~L~l~~n~i~-~~~~~ 256 (363)
+..+++|+.|++++|.++ .+|..
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 233567999999999998 78889
Q ss_pred ccCCCCCcEEECCCCCCC-CCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhh
Q 017986 257 IGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALR 326 (363)
Q Consensus 257 ~~~~~~L~~L~L~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 326 (363)
++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+++...+..++.++.|++|++++|+++|..|.
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999999999998 7899999999999999999999966566689999999999999999998765
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=2.9e-25 Score=201.16 Aligned_cols=231 Identities=23% Similarity=0.288 Sum_probs=196.6
Q ss_pred cccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccc---cccccCCCCCCEEEcCCC
Q 017986 100 DRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV---PDQIDGLTGLKKLLLDAN 176 (363)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i---~~~~~~l~~L~~L~L~~n 176 (363)
+.+.+..+..++... .+.+++|++++|.++.+|..+|..+++|++|++++|.++.+ +..+..+++|++|++++|
T Consensus 12 l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 12 IRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 444444444444322 36799999999999999999999999999999999999855 456778999999999999
Q ss_pred CCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC--ccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCcc-
Q 017986 177 DLSNDSISWVQLAKLKHLTVLSISRNCLNSLP--GILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISF- 252 (363)
Q Consensus 177 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~- 252 (363)
.+.. ++ ..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+... +..+..+++|+.|++++|.+..
T Consensus 89 ~i~~--l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 89 GVIT--MS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SEEE--EE-EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cccc--Ch-hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 9874 33 24788999999999999999876 3688899999999999999865 5667889999999999999985
Q ss_pred -CCccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccC
Q 017986 253 -LPESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEG 330 (363)
Q Consensus 253 -~~~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~ 330 (363)
+|..+..+++|++|++++|.+..+ |..+..+++|++|++++|.++.++...+..+++|+.|++++|++++..+..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 677889999999999999999977 667889999999999999999998878999999999999999999988877777
Q ss_pred ch-HHHH
Q 017986 331 WD-DFDK 336 (363)
Q Consensus 331 l~-~l~~ 336 (363)
++ +|+.
T Consensus 246 ~~~~L~~ 252 (306)
T 2z66_A 246 FPSSLAF 252 (306)
T ss_dssp CCTTCCE
T ss_pred hhccCCE
Confidence 64 4443
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=7.2e-25 Score=216.83 Aligned_cols=278 Identities=16% Similarity=0.160 Sum_probs=149.5
Q ss_pred CCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccCcccCCCccccccCCCcccccccccccccccCCCCChHHhh
Q 017986 39 NVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRKTDRVRDMKMVPVGKTSSERW 118 (363)
Q Consensus 39 ~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 118 (363)
++|...+.+.+.+..+....... +.....++.+...+.. ............+.++.+.+.++.+..+.+..+..+
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTT---FSRLINLTFLDLTRCQ--IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTT---STTCTTCSEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CCCCcCcEEEccCCccCcCChhH---hccCccceEEECCCCc--cceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 46667777887777665432211 2222222333333321 111222334456677777777777777666677777
Q ss_pred cccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcC--
Q 017986 119 KATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLT-- 195 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~-- 195 (363)
+.|++|++++|.++.++...+..+++|++|++++|++..++ +.+..+++|++|++++|.+.. +....+..+++|+
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY--LSKEDMSSLQQATNL 182 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE--ECHHHHHTTTTCCSE
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc--cChhhhhhhccccee
Confidence 77777777777777776666667777777777777777652 334447777777777777763 3334566666666
Q ss_pred EEEcCCCcCCCCCccccCCC----------------------------------------------------CCCEEEcc
Q 017986 196 VLSISRNCLNSLPGILGHLT----------------------------------------------------ALQHLDVS 223 (363)
Q Consensus 196 ~L~l~~n~l~~l~~~l~~l~----------------------------------------------------~L~~L~l~ 223 (363)
.|++++|.+..++....... +|+.|+++
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 66666666554321111000 33444444
Q ss_pred cCcCCCcch-hhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCC-CCC
Q 017986 224 NNKLTTLPT-EIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALK-SLP 300 (363)
Q Consensus 224 ~n~i~~l~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~-~~~ 300 (363)
+|.++.++. .+..+++|+.|++++|.++.+|..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+. .++
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred cCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 444444422 24445555555555555555555555555555555555555543 233444444444444444443 333
Q ss_pred hhhhhCCCCCCEEEccCCccchh
Q 017986 301 TTLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 301 ~~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
...+..+++|+.|++++|.+++.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEE
T ss_pred hhhhhccCcCCEEECCCCccccc
Confidence 33344444444444444444433
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=7.3e-25 Score=208.64 Aligned_cols=233 Identities=20% Similarity=0.292 Sum_probs=200.6
Q ss_pred ccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCCCEEEcCCCC
Q 017986 99 TDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGLKKLLLDAND 177 (363)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~~n~ 177 (363)
.+...+..+..++... .+.++.|++++|.++.++...|..+++|++|+|++|.++.++ ..|.++++|++|++++|.
T Consensus 47 ~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4445555555554332 267899999999999999988999999999999999999874 668999999999999999
Q ss_pred CCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccC-cCCCcch-hhcCCCCCCEEeccCCcCccCC
Q 017986 178 LSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNN-KLTTLPT-EIGLLSKLEVLKANNNRISFLP 254 (363)
Q Consensus 178 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n-~i~~l~~-~~~~~~~L~~L~l~~n~i~~~~ 254 (363)
++. ++...|..+++|++|++++|.++.++ ..+..+++|++|++++| .+..++. .+..+++|+.|++++|.++.+|
T Consensus 124 l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 124 LTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CSS--CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CCe--eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 985 55457899999999999999999886 46888999999999994 5666654 5789999999999999999887
Q ss_pred ccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchH
Q 017986 255 ESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDD 333 (363)
Q Consensus 255 ~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 333 (363)
.+..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.+++..|..+++|+.|+|++|+++......+..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 478899999999999999977 678899999999999999999999888999999999999999999887777777776
Q ss_pred HHHH
Q 017986 334 FDKR 337 (363)
Q Consensus 334 l~~~ 337 (363)
|+.+
T Consensus 281 L~~L 284 (440)
T 3zyj_A 281 LERI 284 (440)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 6543
No 29
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3e-24 Score=191.03 Aligned_cols=200 Identities=31% Similarity=0.479 Sum_probs=177.4
Q ss_pred ccceeecccccCccCChhhhhcCCceeEEEccCCcCccccc-cccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEE
Q 017986 120 ATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLS 198 (363)
Q Consensus 120 ~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~ 198 (363)
..+.++++++.++.+|..+. +++++|++++|+++.++. .|..+++|++|++++|.+.. ++...|..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEE
Confidence 45679999999999997653 579999999999998864 68899999999999999985 4545678899999999
Q ss_pred cCCCcCCCCC-ccccCCCCCCEEEcccCcCCCcc-hhhcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEECCCCCCCC
Q 017986 199 ISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLP-TEIGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDLSSNLLSE 275 (363)
Q Consensus 199 l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L~~n~l~~ 275 (363)
+++|.++.++ ..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+..++.. +..+++|++|++++|.+..
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 9999999887 45688999999999999999885 4568999999999999999988764 7889999999999999998
Q ss_pred CCh-hccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 276 LPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 276 l~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
++. .+..+++|++|++++|.++.++..+|..+++|+.|++++|++.|.+
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 864 5788999999999999999999988999999999999999999875
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.3e-25 Score=215.70 Aligned_cols=235 Identities=18% Similarity=0.214 Sum_probs=180.8
Q ss_pred CCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccccc-ccCCCCCCE
Q 017986 92 SPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQ-IDGLTGLKK 170 (363)
Q Consensus 92 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~-~~~l~~L~~ 170 (363)
..++.++.+.+.++.+..+....+..++.|++|++++|.++.+++..|..+++|++|+|++|.++.+|.. |..+++|++
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 3456788888888888888877888888999999999999888888888888899999999988888665 578889999
Q ss_pred EEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCC-----------------------------------
Q 017986 171 LLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLT----------------------------------- 215 (363)
Q Consensus 171 L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~----------------------------------- 215 (363)
|++++|.+.. +....+..+++|++|++++|.++.++ +..++
T Consensus 152 L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 152 LSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp EECCSSCCCB--CCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred EEeeCCcCCC--CChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 9999988875 33346788888999999988887654 12222
Q ss_pred -----CCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccC-CccccCCCCCcEEECCCCCCCCCChhccCCCCCCEE
Q 017986 216 -----ALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL-PESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKAL 289 (363)
Q Consensus 216 -----~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L 289 (363)
+|+.|++++|.++.. ..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.++.+|..+..+++|+.|
T Consensus 228 ~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 306 (597)
T 3oja_B 228 GPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306 (597)
T ss_dssp CSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEE
T ss_pred cccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEE
Confidence 234444444444432 3467778888888888888855 556788888999999998888887777778889999
Q ss_pred ECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCch
Q 017986 290 HLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWD 332 (363)
Q Consensus 290 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~ 332 (363)
+|++|.++.+|.. +..+++|+.|++++|+++...+..+..+.
T Consensus 307 ~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~L~ 348 (597)
T 3oja_B 307 DLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLSTHHTLK 348 (597)
T ss_dssp ECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCTTCCCS
T ss_pred ECCCCCCCccCcc-cccCCCCCEEECCCCCCCCcChhhcCCCC
Confidence 9999998888765 57788999999999998877544444433
No 31
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=7.4e-25 Score=195.56 Aligned_cols=204 Identities=26% Similarity=0.358 Sum_probs=177.0
Q ss_pred cccceeecccccCccCChhhhhcCCceeEEEccCCcCccccc-cccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEE
Q 017986 119 KATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVL 197 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L 197 (363)
+.+++|++++|.++.++...+..+++|++|++++|.++.++. .|..+++|++|++++|.+.. +....+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc--cChhhhcCCccccEE
Confidence 468999999999999998888888999999999999997754 68889999999999999875 333568889999999
Q ss_pred EcCCCcCCCCCc-cccCCCCCCEEEcccCcCCC--cchhhcCCCCCCEEeccCCcCccCC-ccccCCCCCc----EEECC
Q 017986 198 SISRNCLNSLPG-ILGHLTALQHLDVSNNKLTT--LPTEIGLLSKLEVLKANNNRISFLP-ESIGNCTSLI----EIDLS 269 (363)
Q Consensus 198 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~i~~--l~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~----~L~L~ 269 (363)
++++|.+..++. .+..+++|++|++++|.++. +|..+..+++|+.|++++|.++.++ ..+..+++|+ .|+++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 999999998764 68889999999999999986 5788899999999999999999765 3455555555 89999
Q ss_pred CCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 270 SNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 270 ~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
+|.+..++.......+|+.|++++|.++.++..+|..+++|+.|++++|+++|++
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp SSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 9999988766555668999999999999999988999999999999999999865
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.6e-24 Score=207.01 Aligned_cols=233 Identities=21% Similarity=0.262 Sum_probs=199.2
Q ss_pred ccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCCCEEEcCCCC
Q 017986 99 TDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGLKKLLLDAND 177 (363)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~~n~ 177 (363)
.+...+..+..++... .+.+++|++++|.++.++...|..+++|++|+|++|.++.++ ..|.++++|++|++++|.
T Consensus 58 ~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 3444444444444321 267899999999999999888999999999999999999774 678999999999999999
Q ss_pred CCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEccc-CcCCCcch-hhcCCCCCCEEeccCCcCccCC
Q 017986 178 LSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSN-NKLTTLPT-EIGLLSKLEVLKANNNRISFLP 254 (363)
Q Consensus 178 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~-n~i~~l~~-~~~~~~~L~~L~l~~n~i~~~~ 254 (363)
+.. ++...|..+++|++|++++|.++.++ ..+..+++|+.|++++ +.+..++. .+..+++|+.|++++|.++.+|
T Consensus 135 l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 135 LTV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp CSB--CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CCc--cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 985 55456889999999999999999886 4688999999999998 46667754 5789999999999999999886
Q ss_pred ccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchH
Q 017986 255 ESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDD 333 (363)
Q Consensus 255 ~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 333 (363)
.+..+++|++|++++|.+..+ |..+..+++|+.|++++|.++.+++..|..+++|+.|+|++|+++......+..+++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 478899999999999999977 677899999999999999999998888999999999999999999887777777666
Q ss_pred HHHH
Q 017986 334 FDKR 337 (363)
Q Consensus 334 l~~~ 337 (363)
|+.+
T Consensus 292 L~~L 295 (452)
T 3zyi_A 292 LVEL 295 (452)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 6543
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.3e-24 Score=220.94 Aligned_cols=254 Identities=20% Similarity=0.247 Sum_probs=141.4
Q ss_pred CCccccccccccccc-ccC-CCCChHHhhc-------ccceeecccccCccCCh-hhhhcCCceeEEEccCCcCcccccc
Q 017986 92 SPITSRKTDRVRDMK-MVP-VGKTSSERWK-------ATGVIALAEHNLKAIPD-EVWDCSPFIRVLDIRTNSIQCVPDQ 161 (363)
Q Consensus 92 ~~~~~l~~l~~~~~~-~~~-~~~~~~~~~~-------~l~~L~l~~n~i~~i~~-~~~~~~~~L~~L~L~~n~i~~i~~~ 161 (363)
...+.++.+.+.++. +.. ..+..+..+. .|+.|++++|.++.+|. ..+..+++|++|++++|+++.+| .
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~ 590 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-A 590 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-C
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-h
Confidence 345566666666665 433 2223334443 66666666666666665 34455566666666666666665 5
Q ss_pred ccCCCCCCEEEcCCCCCCCCCCChHhhcCCCC-cCEEEcCCCcCCCCCccccCC--------------------------
Q 017986 162 IDGLTGLKKLLLDANDLSNDSISWVQLAKLKH-LTVLSISRNCLNSLPGILGHL-------------------------- 214 (363)
Q Consensus 162 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~l~~~l~~l-------------------------- 214 (363)
+..+++|+.|++++|.+.. ++ ..+..+++ |+.|++++|.++.+|..+..+
T Consensus 591 ~~~L~~L~~L~Ls~N~l~~--lp-~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIEE--IP-EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCTTSEESEEECCSSCCSC--CC-TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hcCCCcceEEECcCCcccc--ch-HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 6666666666666666652 22 23555555 666666666665555433332
Q ss_pred -----CCCCEEEcccCcCCCcchhh-cCCCCCCEEeccCCcCccCCccccCC--------CCCcEEECCCCCCCCCChhc
Q 017986 215 -----TALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISFLPESIGNC--------TSLIEIDLSSNLLSELPVTL 280 (363)
Q Consensus 215 -----~~L~~L~l~~n~i~~l~~~~-~~~~~L~~L~l~~n~i~~~~~~~~~~--------~~L~~L~L~~n~l~~l~~~~ 280 (363)
++|+.|++++|.++.+|..+ ..+++|+.|++++|.+..+|..+... ++|+.|+|++|.++.+|..+
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l 747 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHh
Confidence 24455555555555554443 35566666666666666555433221 25666666666666666555
Q ss_pred c--CCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccC------CccchhhhhcccCchHHHHHHHHhhccccceeecc
Q 017986 281 E--NLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHN------TEITMDALRQLEGWDDFDKRRRAKHQKQLDFRVMG 352 (363)
Q Consensus 281 ~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~i~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~ 352 (363)
. .+++|+.|+|++|.++.+|.. +..+++|+.|+|++ |.+.+..+..+..+++|+. ++++.+.
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~lp~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~---------L~Ls~N~ 817 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ---------LQIGSND 817 (876)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCG-GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE---------EECCSSC
T ss_pred hhccCCCcCEEEeCCCCCCccchh-hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE---------EECCCCC
Confidence 4 566666666666666665544 44566666666654 4555555555555554443 4444444
Q ss_pred CCCCCCc
Q 017986 353 STEFDEG 359 (363)
Q Consensus 353 ~~~~~~~ 359 (363)
.+.++..
T Consensus 818 L~~Ip~~ 824 (876)
T 4ecn_A 818 IRKVDEK 824 (876)
T ss_dssp CCBCCSC
T ss_pred CCccCHh
Confidence 4444443
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=7.5e-24 Score=212.37 Aligned_cols=237 Identities=22% Similarity=0.289 Sum_probs=196.8
Q ss_pred ccccccccccccccCCCCChHHhhcccceeecccccCc-cCChhhhhcCCceeEEEccCCcCccc-cccccCCCCCCEEE
Q 017986 95 TSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLK-AIPDEVWDCSPFIRVLDIRTNSIQCV-PDQIDGLTGLKKLL 172 (363)
Q Consensus 95 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~ 172 (363)
..++.+.+.++.+..+....+..++.|++|++++|.+. .+|...+..+++|++|++++|++..+ +..|..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 35777788888888877778888889999999999886 57777788888899999999988866 45678889999999
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccCcCCCcch---------hhcCCCCCCE
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPT---------EIGLLSKLEV 242 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~~---------~~~~~~~L~~ 242 (363)
+++|.+.........+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 999887643222346788999999999999999886 457889999999999999886532 2678899999
Q ss_pred EeccCCcCccCCc-cccCCCCCcEEECCCCCCCCCChh-ccCCCCCCEEECCCCCCCCCChhhhh-CCCCCCEEEccCCc
Q 017986 243 LKANNNRISFLPE-SIGNCTSLIEIDLSSNLLSELPVT-LENLHYLKALHLDNNALKSLPTTLFS-KCVQLSTLELHNTE 319 (363)
Q Consensus 243 L~l~~n~i~~~~~-~~~~~~~L~~L~L~~n~l~~l~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~ 319 (363)
|++++|.++.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+++.+++..|. .+++|+.+++++|+
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 9999999998886 478999999999999999988654 67889999999999999999988887 78999999999999
Q ss_pred cchhhh--hcccCc
Q 017986 320 ITMDAL--RQLEGW 331 (363)
Q Consensus 320 i~~~~~--~~l~~l 331 (363)
+.|++. ..+..|
T Consensus 621 ~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 621 FDCTCESIAWFVNW 634 (680)
T ss_dssp CCBCCCCCSSEECC
T ss_pred cccCCccHHHHHHH
Confidence 999864 444444
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-24 Score=209.07 Aligned_cols=235 Identities=17% Similarity=0.139 Sum_probs=204.7
Q ss_pred CcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEE
Q 017986 93 PITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLL 172 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~ 172 (363)
..+.++.+.+.++.+..+.+..+..++.|++|++++|.++.+++ +..+++|++|+|++|.++.++. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 45579999999999999988899999999999999999987766 7788999999999999997764 38999999
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCC-CccccCCCCCCEEEcccCcCCCc-chhhc-CCCCCCEEeccCCc
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTL-PTEIG-LLSKLEVLKANNNR 249 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~i~~l-~~~~~-~~~~L~~L~l~~n~ 249 (363)
+++|.+.... ...+++|+.|++++|.++.+ |..+..+++|++|++++|.++.. |..+. .+++|+.|++++|.
T Consensus 106 L~~N~l~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 106 AANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CCSSCCCCEE-----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CcCCcCCCCC-----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999998622 24578999999999999977 45788899999999999999975 55564 78999999999999
Q ss_pred CccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchh-hhhcc
Q 017986 250 ISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMD-ALRQL 328 (363)
Q Consensus 250 i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l 328 (363)
++.++. ...+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|+++|. .+..+
T Consensus 181 l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 181 IYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHH
Confidence 997754 4468999999999999999988899999999999999999998865 78899999999999999955 45677
Q ss_pred cCchHHHHHHHH
Q 017986 329 EGWDDFDKRRRA 340 (363)
Q Consensus 329 ~~l~~l~~~~~~ 340 (363)
..++.|..+...
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 888988887664
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3.6e-24 Score=211.85 Aligned_cols=208 Identities=19% Similarity=0.259 Sum_probs=102.8
Q ss_pred HHhhcccceeecccccCccCC--hhhhhcCCceeEEEccCCcCccc-cccccCCCCCCEEEcCCCCCCCCCCChHhhcCC
Q 017986 115 SERWKATGVIALAEHNLKAIP--DEVWDCSPFIRVLDIRTNSIQCV-PDQIDGLTGLKKLLLDANDLSNDSISWVQLAKL 191 (363)
Q Consensus 115 ~~~~~~l~~L~l~~n~i~~i~--~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l 191 (363)
+..++.|++|++++|.+..++ ...+..+++|++|++++|++..+ +..+..+++|++|++++|.+.... +...+..+
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l 424 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-AQSPFQNL 424 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT-TCCTTTTC
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc-cchhhhCc
Confidence 333444444444444443332 22233334444444444444432 233444444444444444443211 11124445
Q ss_pred CCcCEEEcCCCcCCCC-CccccCCCCCCEEEcccCcCCC--c--chhhcCCCCCCEEeccCCcCccC-CccccCCCCCcE
Q 017986 192 KHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTT--L--PTEIGLLSKLEVLKANNNRISFL-PESIGNCTSLIE 265 (363)
Q Consensus 192 ~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~i~~--l--~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~ 265 (363)
++|++|++++|.+... +..+..+++|++|++++|.+.. + +..+..+++|+.|++++|.++.+ |..+..+++|++
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 5555555555555433 3344555555555555555542 1 12345555566666666555544 234555566666
Q ss_pred EECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 266 IDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 266 L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
|++++|.++.. |..+..++.| .|++++|+++.+++..+..+++|+.|++++|+++|++
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 66666665543 4455555566 6666666666665555555666666666666666543
No 37
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=1.2e-23 Score=190.85 Aligned_cols=199 Identities=22% Similarity=0.337 Sum_probs=179.8
Q ss_pred hHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCC
Q 017986 114 SSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKH 193 (363)
Q Consensus 114 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 193 (363)
....++.++.|+++++.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.+.. ++ .+..+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~--~~--~~~~l~~ 108 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN--VS--AIAGLQS 108 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC--CG--GGTTCTT
T ss_pred cHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC--ch--hhcCCCC
Confidence 56788999999999999999873 6678999999999999998876 8999999999999999986 32 5889999
Q ss_pred cCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCC
Q 017986 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLL 273 (363)
Q Consensus 194 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l 273 (363)
|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 109 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence 9999999999998876 8899999999999999998865 8899999999999999998876 88999999999999999
Q ss_pred CCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhh
Q 017986 274 SELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDAL 325 (363)
Q Consensus 274 ~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 325 (363)
+.++. +..+++|++|++++|.++.+++ +..+++|+.|++++|++++...
T Consensus 186 ~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 186 SDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred CcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 98874 7889999999999999999874 7899999999999999987543
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=8e-25 Score=198.98 Aligned_cols=229 Identities=19% Similarity=0.266 Sum_probs=196.9
Q ss_pred ccCCCccccccccccc-ccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCc-cccccccCCC
Q 017986 89 EAQSPITSRKTDRVRD-MKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQ-CVPDQIDGLT 166 (363)
Q Consensus 89 ~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~-~i~~~~~~l~ 166 (363)
......+.++.+.+.+ +.+....+..+..++.|++|++++|.++...+..+..+++|++|++++|.++ .+|..+..++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 3455678899999994 8888777888999999999999999998444445677899999999999999 6788899999
Q ss_pred CCCEEEcCCCCCCCCCCChHhhcCCC-CcCEEEcCCCcCC-CCCccccCCCCCCEEEcccCcCCC-cchhhcCCCCCCEE
Q 017986 167 GLKKLLLDANDLSNDSISWVQLAKLK-HLTVLSISRNCLN-SLPGILGHLTALQHLDVSNNKLTT-LPTEIGLLSKLEVL 243 (363)
Q Consensus 167 ~L~~L~L~~n~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~i~~-l~~~~~~~~~L~~L 243 (363)
+|++|++++|.+.+. ++ ..+..++ +|++|++++|.++ .+|..+..++ |++|++++|.++. .|..+..+++|+.|
T Consensus 150 ~L~~L~L~~N~l~~~-~p-~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 150 NLVGITFDGNRISGA-IP-DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp TCCEEECCSSCCEEE-CC-GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred CCCeEECcCCcccCc-CC-HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence 999999999999742 33 4577887 9999999999988 6788788887 9999999999984 47778999999999
Q ss_pred eccCCcCccCCccccCCCCCcEEECCCCCCC-CCChhccCCCCCCEEECCCCCCC-CCChhhhhCCCCCCEEEccCCccc
Q 017986 244 KANNNRISFLPESIGNCTSLIEIDLSSNLLS-ELPVTLENLHYLKALHLDNNALK-SLPTTLFSKCVQLSTLELHNTEIT 321 (363)
Q Consensus 244 ~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~ 321 (363)
++++|.++..++.+..+++|++|++++|.+. .+|..+..+++|+.|++++|+++ .+|. . ..+++|+.+++++|+.-
T Consensus 227 ~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S-TTGGGSCGGGTCSSSEE
T ss_pred ECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-C-ccccccChHHhcCCCCc
Confidence 9999999866666888999999999999998 77889999999999999999998 5544 2 77899999999999843
Q ss_pred h
Q 017986 322 M 322 (363)
Q Consensus 322 ~ 322 (363)
+
T Consensus 305 c 305 (313)
T 1ogq_A 305 C 305 (313)
T ss_dssp E
T ss_pred c
Confidence 3
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.2e-23 Score=189.05 Aligned_cols=202 Identities=29% Similarity=0.353 Sum_probs=178.6
Q ss_pred HHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccc-cccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCC
Q 017986 115 SERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV-PDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKH 193 (363)
Q Consensus 115 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 193 (363)
+..++.++.++++++.++.+|..++ +.+++|++++|.++.+ +..|..+++|++|++++|.++.. + ....+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--Q--VDGTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--E--CCSCCTT
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc--c--CCCCCCc
Confidence 4567788999999999999998764 5799999999999977 46789999999999999999852 2 1368899
Q ss_pred cCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcc-hhhcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEECCCC
Q 017986 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLP-TEIGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDLSSN 271 (363)
Q Consensus 194 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L~~n 271 (363)
|++|++++|.++.+|..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.++.++.. +..+++|+.|++++|
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999999999988899999999999999999886 5689999999999999999988754 678999999999999
Q ss_pred CCCCCChh-ccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 272 LLSELPVT-LENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 272 ~l~~l~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
.++.+|.. +..+++|+.|++++|.++.+|..++ .+++|+.+++++|++.|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCSG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCccCcC
Confidence 99999754 6789999999999999999998754 5679999999999999875
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=3.6e-24 Score=191.99 Aligned_cols=233 Identities=23% Similarity=0.322 Sum_probs=198.7
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCc-Cccc-cccccCCCCCCEE
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNS-IQCV-PDQIDGLTGLKKL 171 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~-i~~i-~~~~~~l~~L~~L 171 (363)
.+.++.+.+.++.+..+....+..++.|++|++++|.++.++...+..+++|++|++++|. +..+ +..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4578999999999999888889999999999999999999988888889999999999997 8877 6678999999999
Q ss_pred EcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccCcCCCcch-hhcCCCCCCEEeccCCc
Q 017986 172 LLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNR 249 (363)
Q Consensus 172 ~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~ 249 (363)
++++|.+.. +....+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.
T Consensus 111 ~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 111 HLDRCGLQE--LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp ECTTSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCE--ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 999999986 33356889999999999999999887 457889999999999999998865 47889999999999999
Q ss_pred CccC-CccccCCCCCcEEECCCCCCCCCCh-hccCCCCCCEEECCCCCCCCCCh-hhhhCCCCCCEEEccCCccchhhhh
Q 017986 250 ISFL-PESIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPT-TLFSKCVQLSTLELHNTEITMDALR 326 (363)
Q Consensus 250 i~~~-~~~~~~~~~L~~L~L~~n~l~~l~~-~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~ 326 (363)
+..+ |..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..... ..+ ...++.+....+.+.|..+.
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~--~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--HHHHHHCCSEECCCBEEESG
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH--HHHHHhcccccCccccCCch
Confidence 9966 6678999999999999999998864 58899999999999999874332 111 12334445777888888877
Q ss_pred cccC
Q 017986 327 QLEG 330 (363)
Q Consensus 327 ~l~~ 330 (363)
.+.+
T Consensus 267 ~l~g 270 (285)
T 1ozn_A 267 RLAG 270 (285)
T ss_dssp GGTT
T ss_pred HhCC
Confidence 7655
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.1e-24 Score=198.00 Aligned_cols=221 Identities=21% Similarity=0.200 Sum_probs=160.4
Q ss_pred ccccccccccccCCCCChHH--------hhcccceeecccccCc-cCChhhh-hcCCceeEEEccCCcCccccccccCC-
Q 017986 97 RKTDRVRDMKMVPVGKTSSE--------RWKATGVIALAEHNLK-AIPDEVW-DCSPFIRVLDIRTNSIQCVPDQIDGL- 165 (363)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~~--------~~~~l~~L~l~~n~i~-~i~~~~~-~~~~~L~~L~L~~n~i~~i~~~~~~l- 165 (363)
++.+.+.++.+......... .++.|++|++++|.++ .+|..+| ..+++|++|++++|+++.+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 66677777666443222222 4778888888888887 4665543 67788888888888888776666555
Q ss_pred ----CCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCC---CCccc--cCCCCCCEEEcccCcCCCcc---h-
Q 017986 166 ----TGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNS---LPGIL--GHLTALQHLDVSNNKLTTLP---T- 232 (363)
Q Consensus 166 ----~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~~l--~~l~~L~~L~l~~n~i~~l~---~- 232 (363)
++|++|++++|.+.. +....+..+++|++|++++|.+.. ++..+ ..+++|++|++++|.++.++ .
T Consensus 145 ~~~~~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLN--FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp TTCCTTCCEEEEESCSCCC--CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCcc--chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 788888888888875 333467788888888888887653 23333 67788888888888887443 2
Q ss_pred hhcCCCCCCEEeccCCcCccCC--ccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCC
Q 017986 233 EIGLLSKLEVLKANNNRISFLP--ESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQL 310 (363)
Q Consensus 233 ~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 310 (363)
.+..+++|+.|++++|.++..+ ..+..+++|++|++++|.++.+|..+. ++|++|++++|+++.+|. +..+++|
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L 298 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS--PDELPQV 298 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC--TTTSCEE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh--HhhCCCC
Confidence 2356788888888888887644 345667888888888888888876655 788888888888888854 6788888
Q ss_pred CEEEccCCccchh
Q 017986 311 STLELHNTEITMD 323 (363)
Q Consensus 311 ~~L~L~~n~i~~~ 323 (363)
+.|++++|+|++.
T Consensus 299 ~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 299 GNLSLKGNPFLDS 311 (312)
T ss_dssp EEEECTTCTTTCC
T ss_pred CEEeccCCCCCCC
Confidence 8888888888764
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.1e-23 Score=209.09 Aligned_cols=235 Identities=23% Similarity=0.324 Sum_probs=171.8
Q ss_pred CcccccccccccccccCCCCChHHhhccccee----------------------------ecccccCccCChhhhhcCCc
Q 017986 93 PITSRKTDRVRDMKMVPVGKTSSERWKATGVI----------------------------ALAEHNLKAIPDEVWDCSPF 144 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L----------------------------~l~~n~i~~i~~~~~~~~~~ 144 (363)
..+.++.+.+.++.+..+....+..++.|++| ++++|.+..+++..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 34455566666655555555555555555554 44555555555555666667
Q ss_pred eeEEEccCCcCc-ccc-ccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCC---CCCccccCCCCCCE
Q 017986 145 IRVLDIRTNSIQ-CVP-DQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLN---SLPGILGHLTALQH 219 (363)
Q Consensus 145 L~~L~L~~n~i~-~i~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~---~l~~~l~~l~~L~~ 219 (363)
|++|++++|.+. .++ ..+.++++|+.|++++|.+.. +....|..+++|+.|++++|.+. .+|..+..+++|++
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ--LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE--CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcce--eChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 777777777665 343 456667777777777776653 23345667777777777777664 45677888899999
Q ss_pred EEcccCcCCCcch-hhcCCCCCCEEeccCCcCccCCc---------cccCCCCCcEEECCCCCCCCCCh-hccCCCCCCE
Q 017986 220 LDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISFLPE---------SIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKA 288 (363)
Q Consensus 220 L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~i~~~~~---------~~~~~~~L~~L~L~~n~l~~l~~-~~~~~~~L~~ 288 (363)
|++++|.++.+++ .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.++.+|. .+..+++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 9999999988754 47888999999999998885521 26788999999999999998875 5788999999
Q ss_pred EECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhccc
Q 017986 289 LHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLE 329 (363)
Q Consensus 289 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~ 329 (363)
|++++|+++.+++.+|..+++|+.|++++|++++..+..+.
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 99999999999998899999999999999999887665544
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=6.3e-23 Score=201.25 Aligned_cols=136 Identities=22% Similarity=0.278 Sum_probs=88.8
Q ss_pred CCCCcCEEEcCCCcCCC-CCccccCCCCCCEEEcccCcCCCcc---hhhcCCCCCCEEeccCCcCcc-CCcc-ccC----
Q 017986 190 KLKHLTVLSISRNCLNS-LPGILGHLTALQHLDVSNNKLTTLP---TEIGLLSKLEVLKANNNRISF-LPES-IGN---- 259 (363)
Q Consensus 190 ~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l~~n~i~~l~---~~~~~~~~L~~L~l~~n~i~~-~~~~-~~~---- 259 (363)
.+++|++|++++|.++. +|..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+.. +|.. +..
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 34555555555555553 3444555555555555555555432 234555555555555555543 3321 222
Q ss_pred -----------------C-CCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccc
Q 017986 260 -----------------C-TSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEIT 321 (363)
Q Consensus 260 -----------------~-~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 321 (363)
+ ++|++|++++|.++.+|..+..+++|++|++++|+++.+|..+|..+++|+.|++++|+++
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 2 5778888888888888777778888888999888888888777788888889999999888
Q ss_pred hhhh
Q 017986 322 MDAL 325 (363)
Q Consensus 322 ~~~~ 325 (363)
|++.
T Consensus 511 c~c~ 514 (562)
T 3a79_B 511 CTCP 514 (562)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 8653
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=6.9e-24 Score=209.80 Aligned_cols=228 Identities=18% Similarity=0.145 Sum_probs=195.6
Q ss_pred CcccccccccccccccCCCCChHHhhcccceeecccccCccCC--hhhhhcCCceeEEEccCCcCccccccccCCCCCCE
Q 017986 93 PITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIP--DEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKK 170 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~--~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~ 170 (363)
..+.++.+.+.++...... .+..++.|++|++++|.++.++ ...+..+++|++|++++|.++.+|..+..+++|+.
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE
T ss_pred CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe
Confidence 5667888888877443322 5567889999999999998773 45567789999999999999999888999999999
Q ss_pred EEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCC-CCccccCCCCCCEEEcccCcCCC--cchhhcCCCCCCEEeccC
Q 017986 171 LLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNS-LPGILGHLTALQHLDVSNNKLTT--LPTEIGLLSKLEVLKANN 247 (363)
Q Consensus 171 L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l~~n~i~~--l~~~~~~~~~L~~L~l~~ 247 (363)
|++++|.+... .+...+..+++|++|++++|.+.. .|..+..+++|++|++++|.+.. +|..+..+++|+.|++++
T Consensus 404 L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 404 LDFQHSTLKRV-TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EECTTSEEEST-TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred eECCCCccCCc-cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 99999998863 222467899999999999999885 46778899999999999999985 577889999999999999
Q ss_pred CcCccC-CccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCC-CCCEEEccCCccchhh
Q 017986 248 NRISFL-PESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCV-QLSTLELHNTEITMDA 324 (363)
Q Consensus 248 n~i~~~-~~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~ 324 (363)
|.++.+ |..+..+++|++|++++|.+..+ |..+..+++|++|++++|+++.+|.. +..++ +|+.|++++|++.|++
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCC
Confidence 999866 45689999999999999999977 77889999999999999999999877 77776 6999999999999865
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=2.1e-24 Score=214.59 Aligned_cols=239 Identities=19% Similarity=0.253 Sum_probs=117.3
Q ss_pred CCccccccccccccc-ccC-CCCChHHhh------cccceeecccccCccCCh-hhhhcCCceeEEEccCCcCc-ccccc
Q 017986 92 SPITSRKTDRVRDMK-MVP-VGKTSSERW------KATGVIALAEHNLKAIPD-EVWDCSPFIRVLDIRTNSIQ-CVPDQ 161 (363)
Q Consensus 92 ~~~~~l~~l~~~~~~-~~~-~~~~~~~~~------~~l~~L~l~~n~i~~i~~-~~~~~~~~L~~L~L~~n~i~-~i~~~ 161 (363)
...+.++.+.+.++. +.+ ..+..+..+ +.|++|++++|.++.+|. ..+..+++|++|++++|+++ .+| .
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 344556666666555 433 222233333 555555555555555554 23444455555555555555 444 4
Q ss_pred ccCCCCCCEEEcCCCCCCCCCCChHhhcCCCC-cCEEEcCCCcCCCCCcc--------------------------cc--
Q 017986 162 IDGLTGLKKLLLDANDLSNDSISWVQLAKLKH-LTVLSISRNCLNSLPGI--------------------------LG-- 212 (363)
Q Consensus 162 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~l~~~--------------------------l~-- 212 (363)
+..+++|+.|++++|.+.. ++ ..+..+++ |++|++++|.++.+|.. +.
T Consensus 349 ~~~l~~L~~L~L~~N~l~~--lp-~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITE--IP-ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CEEEEEESEEECCSSEEEE--CC-TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hCCCCCCCEEECCCCcccc--cc-HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 4444444444444444431 11 12333444 44444444444433332 32
Q ss_pred -----CCCCCCEEEcccCcCCCcchhh-cCCCCCCEEeccCCcCccCCccccC--------CCCCcEEECCCCCCCCCCh
Q 017986 213 -----HLTALQHLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISFLPESIGN--------CTSLIEIDLSSNLLSELPV 278 (363)
Q Consensus 213 -----~l~~L~~L~l~~n~i~~l~~~~-~~~~~L~~L~l~~n~i~~~~~~~~~--------~~~L~~L~L~~n~l~~l~~ 278 (363)
.+++|++|++++|.++.+|..+ ..+++|+.|++++|.++.+|..... +++|++|++++|.++.+|.
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 505 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccCh
Confidence 3345555555555555554432 3355566666666655555433211 1156666666666665555
Q ss_pred hcc--CCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEc------cCCccchhhhhcccCchHHH
Q 017986 279 TLE--NLHYLKALHLDNNALKSLPTTLFSKCVQLSTLEL------HNTEITMDALRQLEGWDDFD 335 (363)
Q Consensus 279 ~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~i~~~~~~~l~~l~~l~ 335 (363)
.+. .+++|+.|++++|+++.+|.. +..+++|+.|++ ++|.+.+..+..+..+++|+
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSSCCCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred hhhhccCCCcCEEECCCCCCCCcChh-hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 554 556666666666666655443 345566666666 33445555454554444443
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=6.6e-24 Score=208.25 Aligned_cols=87 Identities=34% Similarity=0.538 Sum_probs=41.4
Q ss_pred CCCCCEEeccCCcCc--cCCccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEE
Q 017986 237 LSKLEVLKANNNRIS--FLPESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTL 313 (363)
Q Consensus 237 ~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 313 (363)
+++|+.|++++|.+. .+|..+..+++|++|++++|.++.+ |..+..+++|++|++++|+++.+++..|..+++|+.|
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 333444444444333 2333344444455555555544433 3344455555555555555555554445555555555
Q ss_pred EccCCccchh
Q 017986 314 ELHNTEITMD 323 (363)
Q Consensus 314 ~L~~n~i~~~ 323 (363)
++++|+++|.
T Consensus 524 ~l~~N~~~~~ 533 (570)
T 2z63_A 524 WLHTNPWDCS 533 (570)
T ss_dssp ECCSSCBCCC
T ss_pred EecCCcccCC
Confidence 5555555544
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=9.9e-24 Score=204.95 Aligned_cols=230 Identities=19% Similarity=0.170 Sum_probs=146.9
Q ss_pred CCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcc--ccccccCCCCC
Q 017986 91 QSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQC--VPDQIDGLTGL 168 (363)
Q Consensus 91 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~--i~~~~~~l~~L 168 (363)
....+.++.+.+.++.+..+.+..+..++.|++|++++|.++.+|.. .+++|++|++++|+++. +|..+..+++|
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcc
Confidence 34566777777887777777667777777888888888887777765 56778888888887775 35677777888
Q ss_pred CEEEcCCCCCCCCCCChHhhcCCCCc--CEEEcCCCcC--C-CCCccccC------------------------------
Q 017986 169 KKLLLDANDLSNDSISWVQLAKLKHL--TVLSISRNCL--N-SLPGILGH------------------------------ 213 (363)
Q Consensus 169 ~~L~L~~n~~~~~~~~~~~~~~l~~L--~~L~l~~n~l--~-~l~~~l~~------------------------------ 213 (363)
++|++++|.+.. ..+..+++| +.|++++|.+ . ..|..+..
T Consensus 118 ~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 118 KFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp CEEEEEESSCCG-----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred eEEEecCcccch-----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 888887777653 123444444 5555555544 1 11111111
Q ss_pred -----------------------------------------------------CCCCCEEEcccCcCC-Ccchhh-----
Q 017986 214 -----------------------------------------------------LTALQHLDVSNNKLT-TLPTEI----- 234 (363)
Q Consensus 214 -----------------------------------------------------l~~L~~L~l~~n~i~-~l~~~~----- 234 (363)
.++|++|++++|.++ .+|..+
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 272 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCS
T ss_pred eeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccc
Confidence 013444444444433 223222
Q ss_pred ------------------------------------------------cCCCCCCEEeccCCcCcc-CCccccCCCCCcE
Q 017986 235 ------------------------------------------------GLLSKLEVLKANNNRISF-LPESIGNCTSLIE 265 (363)
Q Consensus 235 ------------------------------------------------~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~ 265 (363)
..+++|++|++++|.++. +|..+..+++|++
T Consensus 273 ~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 352 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352 (520)
T ss_dssp CCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred ccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence 455677777777777764 4556677777777
Q ss_pred EECCCCCCCCC---ChhccCCCCCCEEECCCCCCCC-CChhhhhCCCCCCEEEccCCccchhhhhcc
Q 017986 266 IDLSSNLLSEL---PVTLENLHYLKALHLDNNALKS-LPTTLFSKCVQLSTLELHNTEITMDALRQL 328 (363)
Q Consensus 266 L~L~~n~l~~l---~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l 328 (363)
|++++|.+..+ |..+..+++|++|++++|.++. ++...+..+++|+.|++++|++++..+..+
T Consensus 353 L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp EECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred EEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 77777777743 3456677777777777777776 666666677777777777777766555444
No 48
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=6.6e-23 Score=196.55 Aligned_cols=108 Identities=21% Similarity=0.311 Sum_probs=49.1
Q ss_pred cCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEEC
Q 017986 212 GHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHL 291 (363)
Q Consensus 212 ~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L 291 (363)
..+++|++|++++|.++.++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF 338 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred hcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeEC
Confidence 333344444444444433322 3344444444444444443332 3444444444444444444432 344455555555
Q ss_pred CCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 292 DNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 292 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
++|.++.++ .+..+++|+.|++++|++++..
T Consensus 339 ~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 339 YNNKVSDVS--SLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp CSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG
T ss_pred CCCccCCch--hhccCCCCCEEeCCCCccCccc
Confidence 555555442 2445555555555555555443
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=4.8e-23 Score=200.09 Aligned_cols=136 Identities=26% Similarity=0.365 Sum_probs=88.7
Q ss_pred CCCCcCEEEcCCCcCCC-CCccccCCCCCCEEEcccCcCCCc---chhhcCCCCCCEEeccCCcCcc-CCcc-ccCC---
Q 017986 190 KLKHLTVLSISRNCLNS-LPGILGHLTALQHLDVSNNKLTTL---PTEIGLLSKLEVLKANNNRISF-LPES-IGNC--- 260 (363)
Q Consensus 190 ~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l~~n~i~~l---~~~~~~~~~L~~L~l~~n~i~~-~~~~-~~~~--- 260 (363)
.+++|++|++++|.++. +|..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.. +|.. +..+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 44555555555555553 344445555555555555555532 2334455555555555555443 3321 2211
Q ss_pred -------------------CCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccc
Q 017986 261 -------------------TSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEIT 321 (363)
Q Consensus 261 -------------------~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 321 (363)
++|+.|++++|.++.+|..+..+++|++|++++|+++.+|...|..+++|+.|++++|+++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 5778888888888888877778889999999999999888777888899999999999998
Q ss_pred hhhh
Q 017986 322 MDAL 325 (363)
Q Consensus 322 ~~~~ 325 (363)
|++.
T Consensus 482 c~c~ 485 (520)
T 2z7x_B 482 CSCP 485 (520)
T ss_dssp CCHH
T ss_pred ccCC
Confidence 8753
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=5.1e-23 Score=201.91 Aligned_cols=231 Identities=18% Similarity=0.159 Sum_probs=156.7
Q ss_pred cCCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc--ccccCCCC
Q 017986 90 AQSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP--DQIDGLTG 167 (363)
Q Consensus 90 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~--~~~~~l~~ 167 (363)
.....+.++.+.+.++.+..+....|..++.|++|++++|.++.+|.. .+++|++|++++|+++.++ ..|.++++
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCc
Confidence 445566677777777777777666777777777777777777777765 5667777777777777553 56777777
Q ss_pred CCEEEcCCCCCCCCCCChHhhcCCCCc--CEEEcCCCcC--CC-CCccccCC----------------------------
Q 017986 168 LKKLLLDANDLSNDSISWVQLAKLKHL--TVLSISRNCL--NS-LPGILGHL---------------------------- 214 (363)
Q Consensus 168 L~~L~L~~n~~~~~~~~~~~~~~l~~L--~~L~l~~n~l--~~-l~~~l~~l---------------------------- 214 (363)
|++|++++|.+... .+..+++| +.|++++|.+ +. .|..+..+
T Consensus 148 L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 222 (562)
T 3a79_B 148 LTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222 (562)
T ss_dssp CCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEE
T ss_pred ccEEecCCCccccC-----chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccce
Confidence 77777777776642 23333444 7777776665 21 12222111
Q ss_pred -----------------------------------------------------CCCCEEEcccCcCC-Ccchhh------
Q 017986 215 -----------------------------------------------------TALQHLDVSNNKLT-TLPTEI------ 234 (363)
Q Consensus 215 -----------------------------------------------------~~L~~L~l~~n~i~-~l~~~~------ 234 (363)
++|++|++++|.++ .+|..+
T Consensus 223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~ 302 (562)
T 3a79_B 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302 (562)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSC
T ss_pred EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccc
Confidence 14555555555544 333322
Q ss_pred -----------------------------------------------cCCCCCCEEeccCCcCcc-CCccccCCCCCcEE
Q 017986 235 -----------------------------------------------GLLSKLEVLKANNNRISF-LPESIGNCTSLIEI 266 (363)
Q Consensus 235 -----------------------------------------------~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L 266 (363)
..+++|++|++++|.++. +|..+..+++|++|
T Consensus 303 ~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 382 (562)
T 3a79_B 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382 (562)
T ss_dssp SCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEE
T ss_pred cchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEE
Confidence 456778888888888875 56677888888888
Q ss_pred ECCCCCCCCCC---hhccCCCCCCEEECCCCCCCC-CChhhhhCCCCCCEEEccCCccchhhhhcc
Q 017986 267 DLSSNLLSELP---VTLENLHYLKALHLDNNALKS-LPTTLFSKCVQLSTLELHNTEITMDALRQL 328 (363)
Q Consensus 267 ~L~~n~l~~l~---~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l 328 (363)
++++|.++.++ ..+..+++|++|++++|.++. ++...+..+++|+.|++++|++++..+..+
T Consensus 383 ~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 383 ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp ECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred ECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 88888888654 446778888888888888887 777777788888888888888877665554
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=8.1e-24 Score=215.14 Aligned_cols=239 Identities=17% Similarity=0.199 Sum_probs=178.1
Q ss_pred CcccccccccccccccCCCCChHHhhcccceeeccccc-Ccc--CChhhh------hcCCceeEEEccCCcCccccc--c
Q 017986 93 PITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHN-LKA--IPDEVW------DCSPFIRVLDIRTNSIQCVPD--Q 161 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~-i~~--i~~~~~------~~~~~L~~L~L~~n~i~~i~~--~ 161 (363)
..+.++.+.+.++.+....+..+..++.|+.|++++|. ++. +|..+. ..+++|++|++++|+++.+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 57789999999999888778889999999999999998 875 776543 244689999999999999998 8
Q ss_pred ccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCC-CCEEEcccCcCCCcchhhcCCCC-
Q 017986 162 IDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTA-LQHLDVSNNKLTTLPTEIGLLSK- 239 (363)
Q Consensus 162 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~-L~~L~l~~n~i~~l~~~~~~~~~- 239 (363)
+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.++.+|..+..+++ |+.|++++|.++.+|..+..+..
T Consensus 569 l~~L~~L~~L~Ls~N~l~--~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR--HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HTTCTTCCEEECTTSCCC--BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhcCCCCCEEECCCCCcc--cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 999999999999999998 355 688999999999999999999988999998 99999999999888765544332
Q ss_pred -CCEEeccCCcC-----------------------------ccCCccc-cCCCCCcEEECCCCCCCCCChhccC------
Q 017986 240 -LEVLKANNNRI-----------------------------SFLPESI-GNCTSLIEIDLSSNLLSELPVTLEN------ 282 (363)
Q Consensus 240 -L~~L~l~~n~i-----------------------------~~~~~~~-~~~~~L~~L~L~~n~l~~l~~~~~~------ 282 (363)
|+.|++++|.+ ..+|..+ ..+++|+.|++++|.+..+|..+..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 55555555544 4444332 3556666666666666666543322
Q ss_pred --CCCCCEEECCCCCCCCCChhhh-hCCCCCCEEEccCCccchhhhhcccCchHHHH
Q 017986 283 --LHYLKALHLDNNALKSLPTTLF-SKCVQLSTLELHNTEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 283 --~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~ 336 (363)
+++|+.|+|++|+++.+|...+ ..+++|+.|+|++|++++ .+..+..+++|+.
T Consensus 725 ~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~ 780 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA 780 (876)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCE
T ss_pred cccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCE
Confidence 2267777777777776665533 366777777777777766 3444445444443
No 52
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=2.3e-24 Score=214.29 Aligned_cols=228 Identities=19% Similarity=0.294 Sum_probs=143.8
Q ss_pred CCCcccccccccccccccCC-----------------CCChHH--hhcccceeecccccCccCChhhhhcCCceeEEEcc
Q 017986 91 QSPITSRKTDRVRDMKMVPV-----------------GKTSSE--RWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIR 151 (363)
Q Consensus 91 ~~~~~~l~~l~~~~~~~~~~-----------------~~~~~~--~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~ 151 (363)
....+.++.+.+.++.+.+. .+..+. .++.|++|++++|.+....+..+..+++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 33455667777777766652 333444 67777777777776543322344556677777777
Q ss_pred CCc-Ccc--ccccccCC------CCCCEEEcCCCCCCCCCCCh-HhhcCCCCcCEEEcCCCcCC-CCCccccCCCCCCEE
Q 017986 152 TNS-IQC--VPDQIDGL------TGLKKLLLDANDLSNDSISW-VQLAKLKHLTVLSISRNCLN-SLPGILGHLTALQHL 220 (363)
Q Consensus 152 ~n~-i~~--i~~~~~~l------~~L~~L~L~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L 220 (363)
+|+ ++. +|..+..+ ++|++|++++|.++. ++. ..+..+++|++|++++|.++ .+| .+..+++|++|
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L 358 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL 358 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence 776 663 56555544 677777777777762 331 25667777777777777776 666 56666677777
Q ss_pred EcccCcCCCcchhhcCCCC-CCEEeccCCcCccCCccccCCC--CCcEEECCCCCCCC-CChhcc-------CCCCCCEE
Q 017986 221 DVSNNKLTTLPTEIGLLSK-LEVLKANNNRISFLPESIGNCT--SLIEIDLSSNLLSE-LPVTLE-------NLHYLKAL 289 (363)
Q Consensus 221 ~l~~n~i~~l~~~~~~~~~-L~~L~l~~n~i~~~~~~~~~~~--~L~~L~L~~n~l~~-l~~~~~-------~~~~L~~L 289 (363)
++++|.++.+|..+..+++ |+.|++++|.++.+|..+..+. +|++|++++|.+.. +|..+. .+++|++|
T Consensus 359 ~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp ECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred ECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 7777776666666666666 7777777777766665554433 66666666666653 244444 45566666
Q ss_pred ECCCCCCCCCChhhhhCCCCCCEEEccCCccc
Q 017986 290 HLDNNALKSLPTTLFSKCVQLSTLELHNTEIT 321 (363)
Q Consensus 290 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 321 (363)
++++|.++.++..++..+++|+.|++++|.++
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 66666666666666666666666666666666
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=4.3e-23 Score=201.70 Aligned_cols=227 Identities=22% Similarity=0.261 Sum_probs=189.4
Q ss_pred CcccccccccccccccCCC-----CChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccc-c---cccc
Q 017986 93 PITSRKTDRVRDMKMVPVG-----KTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV-P---DQID 163 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~-----~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~---~~~~ 163 (363)
....++.+.+.++.+.... ...+.....++.+++++|.++.+|..++..+++|++|++++|++... | ..+.
T Consensus 279 ~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 358 (549)
T 2z81_A 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358 (549)
T ss_dssp CCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTT
T ss_pred hhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhh
Confidence 3445666666666544321 11134567899999999999999999888889999999999999853 2 3367
Q ss_pred CCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEE
Q 017986 164 GLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVL 243 (363)
Q Consensus 164 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L 243 (363)
.+++|+.|++++|.++........+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++..+ .++|+.|
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L 436 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVL 436 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEE
T ss_pred ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchh--cCCceEE
Confidence 89999999999999975211123588999999999999999999988899999999999999999887654 3689999
Q ss_pred eccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchh
Q 017986 244 KANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 244 ~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
++++|.++.++ ..+++|++|++++|.++.+|. ...+++|+.|++++|+++.+++..|..+++|+.|++++|+++|.
T Consensus 437 ~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 437 DVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp ECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred ECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 99999998764 578899999999999999986 56789999999999999999998899999999999999999987
Q ss_pred hh
Q 017986 324 AL 325 (363)
Q Consensus 324 ~~ 325 (363)
++
T Consensus 513 ~~ 514 (549)
T 2z81_A 513 CP 514 (549)
T ss_dssp HH
T ss_pred Cc
Confidence 64
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=2.5e-22 Score=192.50 Aligned_cols=173 Identities=28% Similarity=0.398 Sum_probs=94.8
Q ss_pred hcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCE
Q 017986 140 DCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQH 219 (363)
Q Consensus 140 ~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~ 219 (363)
..+++|++|++++|.++.++ .+..+++|++|++++|.+... . .+..+++|+.|++++|.++.++. +..+++|++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~--~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 247 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDI--T--PLGILTNLDELSLNGNQLKDIGT-LASLTNLTD 247 (466)
T ss_dssp TTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC--G--GGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred ccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccc--c--cccccCCCCEEECCCCCcccchh-hhcCCCCCE
Confidence 34455566666666555543 245555666666666555531 1 14445556666666665555432 455555666
Q ss_pred EEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCC
Q 017986 220 LDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSL 299 (363)
Q Consensus 220 L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~ 299 (363)
|++++|.++.++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++.+
T Consensus 248 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 248 LDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred EECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence 6666665555433 4555556666666665555443 5555556666666665555542 45555566666666655555
Q ss_pred ChhhhhCCCCCCEEEccCCccchh
Q 017986 300 PTTLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 300 ~~~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
++ +..+++|+.|++++|++++.
T Consensus 325 ~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 325 SP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC
T ss_pred hh--hccCccCCEeECCCCccCCc
Confidence 44 45555666666666655543
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=8.6e-23 Score=194.96 Aligned_cols=187 Identities=22% Similarity=0.213 Sum_probs=105.5
Q ss_pred CcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEE
Q 017986 93 PITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLL 172 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~ 172 (363)
..+.++.+.+.++.+..+. +..++.|++|++++|.++.++ +..+++|++|++++|+++.++ +..+++|++|+
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred ccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 3445555555555555542 445555666666666655554 344555666666666555543 55555666666
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCC-cCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCc
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRN-CLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRIS 251 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~ 251 (363)
+++|.++. ++ +..+++|++|++++| .+..++ +..+++|++|++++|.++.+| +..+++|+.|++++|.++
T Consensus 134 l~~N~l~~--l~---l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 134 CARNTLTE--ID---VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CTTSCCSC--CC---CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred CCCCccce--ec---cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence 66665554 21 445555666666655 333432 445556666666666665554 455566666666666665
Q ss_pred cCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCC
Q 017986 252 FLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLP 300 (363)
Q Consensus 252 ~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~ 300 (363)
.+ .+..+++|++|++++|.++.+| +..+++|+.|++++|+++.++
T Consensus 205 ~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 205 KL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 54 2555566666666666666554 455566666666666666555
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=194.94 Aligned_cols=230 Identities=20% Similarity=0.243 Sum_probs=189.2
Q ss_pred ccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccc-cccccCCCCCCEEEcCCCCCC
Q 017986 101 RVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV-PDQIDGLTGLKKLLLDANDLS 179 (363)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~L~~n~~~ 179 (363)
...+..+..++... .+.+++|++++|.++.++...+..+++|++|++++|.++.+ +..|..+++|++|++++|.++
T Consensus 37 ~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 37 KGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp ECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 33444444444322 25899999999999999998889999999999999999977 456899999999999999998
Q ss_pred CCCCChHhhcCCCCcCEEEcCCCcCCCCCc--cccCCCCCCEEEcccC-cCCCc-chhhcCCCCCCEEeccCCcCccC-C
Q 017986 180 NDSISWVQLAKLKHLTVLSISRNCLNSLPG--ILGHLTALQHLDVSNN-KLTTL-PTEIGLLSKLEVLKANNNRISFL-P 254 (363)
Q Consensus 180 ~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l~~n-~i~~l-~~~~~~~~~L~~L~l~~n~i~~~-~ 254 (363)
. ++...+..+++|++|++++|.++.++. .+..+++|++|++++| .++.+ +..+..+++|+.|++++|.+..+ |
T Consensus 114 ~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 114 N--LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp S--CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred c--CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 5 665668999999999999999999886 6889999999999999 57776 46688999999999999999865 6
Q ss_pred ccccCCCCCcEEECCCCCCCCCChh-ccCCCCCCEEECCCCCCCCCC-------------------------------hh
Q 017986 255 ESIGNCTSLIEIDLSSNLLSELPVT-LENLHYLKALHLDNNALKSLP-------------------------------TT 302 (363)
Q Consensus 255 ~~~~~~~~L~~L~L~~n~l~~l~~~-~~~~~~L~~L~L~~n~l~~~~-------------------------------~~ 302 (363)
..+..+++|++|++++|.+..++.. +..+++|+.|++++|.++.++ +.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHH
Confidence 6789999999999999999988754 456899999999999988654 23
Q ss_pred hhhCCCCCCEEEccCCccchhhhhcccCchHHH
Q 017986 303 LFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335 (363)
Q Consensus 303 ~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~ 335 (363)
.+..+++|+.|++++|+++......+..+++|+
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCC
Confidence 467788999999999998855444445555544
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=3.9e-23 Score=201.96 Aligned_cols=145 Identities=23% Similarity=0.257 Sum_probs=102.6
Q ss_pred CCCCcCEEEcCCCcCCCC-C---ccccCCCCCCEEEcccCcCCCcc---hhhcCCCCCCEEeccCCcCccCCccccCCCC
Q 017986 190 KLKHLTVLSISRNCLNSL-P---GILGHLTALQHLDVSNNKLTTLP---TEIGLLSKLEVLKANNNRISFLPESIGNCTS 262 (363)
Q Consensus 190 ~l~~L~~L~l~~n~l~~l-~---~~l~~l~~L~~L~l~~n~i~~l~---~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 262 (363)
.+++|++|++++|.+... | ..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.++.+|..+..+++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 456666777777766532 2 22456677777777777777664 2367778888888888888888777777778
Q ss_pred CcEEECCCCCCCCCChhc------------------cCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 263 LIEIDLSSNLLSELPVTL------------------ENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 263 L~~L~L~~n~l~~l~~~~------------------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
|++|++++|.++.++..+ ..+++|++|++++|+++.+|.. ..+++|+.|++++|++++..
T Consensus 412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCC
T ss_pred ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCccCCcC
Confidence 888888888776554332 2577888888888888888763 56788999999999888776
Q ss_pred hhcccCchHHHH
Q 017986 325 LRQLEGWDDFDK 336 (363)
Q Consensus 325 ~~~l~~l~~l~~ 336 (363)
+..+..+++|+.
T Consensus 490 ~~~~~~l~~L~~ 501 (549)
T 2z81_A 490 DGIFDRLTSLQK 501 (549)
T ss_dssp TTGGGGCTTCCE
T ss_pred HHHHhcCcccCE
Confidence 665555555443
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6.4e-23 Score=182.66 Aligned_cols=177 Identities=33% Similarity=0.483 Sum_probs=104.2
Q ss_pred CCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEE
Q 017986 142 SPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHL 220 (363)
Q Consensus 142 ~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L 220 (363)
+++|+.|++++|.+..++ .+..+++|++|++++|.+.. + ..+..+++|++|++++|.++.++ ..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~--~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD--I--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC--C--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC--c--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345566666665555443 34555666666666665553 1 13555666666666666666554 234555666666
Q ss_pred EcccCcCCCcchh-hcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEECCCCCCCCCCh-hccCCCCCCEEECCCCCCC
Q 017986 221 DVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALK 297 (363)
Q Consensus 221 ~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L~~n~l~~l~~-~~~~~~~L~~L~L~~n~l~ 297 (363)
++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 6666666655332 45566666666666666655433 4566666666666666665543 2456666666666666666
Q ss_pred CCChhhhhCCCCCCEEEccCCccchh
Q 017986 298 SLPTTLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 298 ~~~~~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
.+++..|..+++|+.|++++|+++|.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc
Confidence 66666566666666666666666654
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=4.8e-23 Score=202.14 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=103.2
Q ss_pred CCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccCcccCCCccccccCCCcccccccccccccccCCCCChHHhh
Q 017986 39 NVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRKTDRVRDMKMVPVGKTSSERW 118 (363)
Q Consensus 39 ~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 118 (363)
.+++..+.+.+.+..+....... +.....++.+...++. ............+.++.+.+.++.+..+....|..+
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTT---TTTCSSCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CccccccEEEccCCccCccChhH---hhCCCCceEEECCCCc--CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 46667888888887766543222 2223333444444432 122333345567789999999999988888889999
Q ss_pred cccceeecccccCccCChhhhhcCCceeEEEccCCcCcc--ccccccCCCCCCEEEcCCCCCCC
Q 017986 119 KATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQC--VPDQIDGLTGLKKLLLDANDLSN 180 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~--i~~~~~~l~~L~~L~L~~n~~~~ 180 (363)
+.|++|++++|.++.++...+..+++|++|++++|.+.. +|..+.++++|++|++++|.+..
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 999999999999999988778888999999999999985 57889999999999999997753
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=6.8e-23 Score=210.09 Aligned_cols=283 Identities=21% Similarity=0.232 Sum_probs=177.9
Q ss_pred hccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccCcccCCCccccccCCCcccccccccccccccCCCCC
Q 017986 34 LLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRKTDRVRDMKMVPVGKT 113 (363)
Q Consensus 34 l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 113 (363)
+.++..+|+..+.+.+++..+..........+.. ++.+...++.. .+.+........+.++.|.+.++.+..+.+.
T Consensus 16 L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~---L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 16 LTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQ---LQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp SSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCS---CSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCCCcCEEECCCCcCCccChhHCccccc---CeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 3444446678888888887666433222222233 33333333211 1223234455677889999999988888888
Q ss_pred hHHhhcccceeecccccCcc-CC-hhhhhcCCceeEEEccCCcCcccc--ccccCCCCCCEEEcCCCCCCCCCCChHhhc
Q 017986 114 SSERWKATGVIALAEHNLKA-IP-DEVWDCSPFIRVLDIRTNSIQCVP--DQIDGLTGLKKLLLDANDLSNDSISWVQLA 189 (363)
Q Consensus 114 ~~~~~~~l~~L~l~~n~i~~-i~-~~~~~~~~~L~~L~L~~n~i~~i~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 189 (363)
.|..++.|++|++++|.+.. ++ ...+..+++|++|++++|.++.++ ..|.++++|++|++++|.+..... ..+.
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~--~~l~ 169 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE--HELE 169 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS--GGGH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH--HHcc
Confidence 88899999999999998875 33 345778889999999999888653 468889999999999988865221 2222
Q ss_pred CC--CC------------------------------cCEEEcCCCcCC-CCCccc-------------------------
Q 017986 190 KL--KH------------------------------LTVLSISRNCLN-SLPGIL------------------------- 211 (363)
Q Consensus 190 ~l--~~------------------------------L~~L~l~~n~l~-~l~~~l------------------------- 211 (363)
.+ ++ |+.|++++|.++ .++..+
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 22 33 455555555332 111000
Q ss_pred -----------cC--CCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCccCC-ccccCCCCCcEEECCCCCCCCC
Q 017986 212 -----------GH--LTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLP-ESIGNCTSLIEIDLSSNLLSEL 276 (363)
Q Consensus 212 -----------~~--l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~L~~n~l~~l 276 (363)
.. .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.+..+
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 00 13566666666666544 344566666777777777666443 3466666777777777776655
Q ss_pred -ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccch
Q 017986 277 -PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITM 322 (363)
Q Consensus 277 -~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 322 (363)
+..+..+++|+.|++++|.++.+++..|..+++|+.|++++|.+++
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 4556666777777777777776666666667777777777776664
No 61
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=2e-22 Score=199.79 Aligned_cols=116 Identities=11% Similarity=0.139 Sum_probs=92.1
Q ss_pred ccCCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccc-cccCCCC
Q 017986 89 EAQSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTG 167 (363)
Q Consensus 89 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~ 167 (363)
..+...+.++.|.+.++.+..+...+|..++.|++|++++|.++.+|.+.|..+++|++|++++|+++.++. .|.++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 345567778888888888888888888888888888888888888888888888888888888888887754 4788888
Q ss_pred CCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCC
Q 017986 168 LKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLN 205 (363)
Q Consensus 168 L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 205 (363)
|++|++++|.+.....+ ..+..+++|++|++++|.++
T Consensus 150 L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCC
T ss_pred cCeeccccCccccCCCc-hhhccchhhhhhcccCcccc
Confidence 88888888888753333 45677888888888887665
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1.4e-23 Score=191.10 Aligned_cols=210 Identities=18% Similarity=0.233 Sum_probs=178.4
Q ss_pred hHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCC
Q 017986 114 SSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKH 193 (363)
Q Consensus 114 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 193 (363)
.+..++.+++|++++|.++.++...+..+++|++|++++|.++.+++ +..+++|++|++++|.++. +...++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-------l~~~~~ 100 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-------LLVGPS 100 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-------EEECTT
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-------ccCCCC
Confidence 44556789999999999999998889999999999999999997764 8899999999999999874 234589
Q ss_pred cCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcc-hhhcCCCCCCEEeccCCcCccCC-ccc-cCCCCCcEEECCC
Q 017986 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLP-TEIGLLSKLEVLKANNNRISFLP-ESI-GNCTSLIEIDLSS 270 (363)
Q Consensus 194 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~-~~~~~~~~L~~L~l~~n~i~~~~-~~~-~~~~~L~~L~L~~ 270 (363)
|++|++++|.++.++. ..+++|++|++++|.++.++ ..+..+++|+.|++++|.+..++ ..+ ..+++|++|++++
T Consensus 101 L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 178 (317)
T 3o53_A 101 IETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (317)
T ss_dssp CCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred cCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence 9999999999998764 34688999999999999884 46788999999999999999664 344 4789999999999
Q ss_pred CCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHH
Q 017986 271 NLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 271 n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~ 336 (363)
|.++.++. ...+++|++|++++|.++.+++. +..+++|+.|++++|+++.. +..+..+++|+.
T Consensus 179 N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l-~~~~~~l~~L~~ 241 (317)
T 3o53_A 179 NFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEH 241 (317)
T ss_dssp SCCCEEEC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCE
T ss_pred CcCccccc-ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccch-hhHhhcCCCCCE
Confidence 99998863 34589999999999999999877 78899999999999999853 444555555544
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=6.3e-23 Score=179.11 Aligned_cols=194 Identities=22% Similarity=0.285 Sum_probs=158.1
Q ss_pred cccceeecccccCccCChhhhhcCCceeEEEccCCc-Cccccc-cccCCCCCCEEEcCC-CCCCCCCCChHhhcCCCCcC
Q 017986 119 KATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNS-IQCVPD-QIDGLTGLKKLLLDA-NDLSNDSISWVQLAKLKHLT 195 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~-i~~i~~-~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~l~~L~ 195 (363)
..+++|++++|.++.++...|..+++|++|++++|+ ++.++. .|.++++|++|++++ |.+.. ++...|.++++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--ECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cCHHHhCCCCCCC
Confidence 378889999999999988888888899999999986 887754 678889999999988 88874 4445678888999
Q ss_pred EEEcCCCcCCCCCccccCCCCCC---EEEcccC-cCCCcch-hhcCCCCCC-EEeccCCcCccCCccccCCCCCcEEECC
Q 017986 196 VLSISRNCLNSLPGILGHLTALQ---HLDVSNN-KLTTLPT-EIGLLSKLE-VLKANNNRISFLPESIGNCTSLIEIDLS 269 (363)
Q Consensus 196 ~L~l~~n~l~~l~~~l~~l~~L~---~L~l~~n-~i~~l~~-~~~~~~~L~-~L~l~~n~i~~~~~~~~~~~~L~~L~L~ 269 (363)
+|++++|.++.+|. +..+++|+ +|++++| .++.++. .+..+++|+ .|++++|.++.+|......++|+.|+++
T Consensus 109 ~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 99999998888887 77777787 9999999 8888754 478888899 9999999888887654444789999999
Q ss_pred CCC-CCCCC-hhccCC-CCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCC
Q 017986 270 SNL-LSELP-VTLENL-HYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNT 318 (363)
Q Consensus 270 ~n~-l~~l~-~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 318 (363)
+|+ ++.++ ..+..+ ++|+.|++++|+++.++.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 995 88774 457777 8899999999999888765 4678888888776
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=7.5e-23 Score=209.78 Aligned_cols=242 Identities=23% Similarity=0.274 Sum_probs=152.0
Q ss_pred ccccccccccccccCCCCChHHhhcccceeecccc-cCccCChhhhhcCCceeEEEccCCcCccc-cccccCCCCCCEEE
Q 017986 95 TSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEH-NLKAIPDEVWDCSPFIRVLDIRTNSIQCV-PDQIDGLTGLKKLL 172 (363)
Q Consensus 95 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~ 172 (363)
+.++.+.+.++.+..+....|..+..|++|++++| .+..+++..|..+++|++|+|++|++..+ |..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 44566666666665555555666666666666666 34455555555666666666666666544 45566666666666
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC--ccccCCCCCCEEEcccCcCCCc-ch-----------------
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP--GILGHLTALQHLDVSNNKLTTL-PT----------------- 232 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~i~~l-~~----------------- 232 (363)
+++|.+....+....+.++++|++|++++|.+..++ ..++.+++|++|++++|.++.+ +.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 666665542222223555666666666666655442 3455666666666666655432 22
Q ss_pred ---------hhcCCCC------CCEEeccCCcCc-cCCcc------------------------------------ccC-
Q 017986 233 ---------EIGLLSK------LEVLKANNNRIS-FLPES------------------------------------IGN- 259 (363)
Q Consensus 233 ---------~~~~~~~------L~~L~l~~n~i~-~~~~~------------------------------------~~~- 259 (363)
.+..+++ |+.|++++|.+. ..+.. +..
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 2222222 777777777544 11111 111
Q ss_pred -CCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHH
Q 017986 260 -CTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 260 -~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~ 336 (363)
.++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+++..|.++++|+.|++++|.+++..+..+..+++|+.
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 25788888888888765 556778888999999999988888777888899999999999988877777877777665
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=9.3e-22 Score=195.02 Aligned_cols=141 Identities=15% Similarity=0.127 Sum_probs=101.9
Q ss_pred hcccc-CCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccCcccCCCccccccCCCcccccccccccccccCCCC
Q 017986 34 LLPLT-NVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGVHQGDGPILKEAQSPITSRKTDRVRDMKMVPVGK 112 (363)
Q Consensus 34 l~~~~-~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 112 (363)
+.++. ++|+..+.+.+++..+....... +.....++.+...+.. ...+...+....+.++.|.+.++.+..+..
T Consensus 43 l~~vP~~lp~~~~~LdLs~N~i~~l~~~~---f~~l~~L~~L~Ls~N~--i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 43 FYKIPDNLPFSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CSSCCSSSCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred cCccCCCCCcCCCEEEeeCCCCCCCCHHH---HhCCCCCCEEECCCCc--CCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 44454 67778899998887776433222 2223333344444331 122333345567788999999999888888
Q ss_pred ChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccc--cccccCCCCCCEEEcCCCCCC
Q 017986 113 TSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV--PDQIDGLTGLKKLLLDANDLS 179 (363)
Q Consensus 113 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i--~~~~~~l~~L~~L~L~~n~~~ 179 (363)
..|..+..|++|++++|.++.+++..|..+++|++|++++|.+..+ |..+..+++|++|++++|.+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 8888999999999999999999988888889999999999988754 566788889999988888654
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.2e-22 Score=178.39 Aligned_cols=203 Identities=25% Similarity=0.377 Sum_probs=177.8
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCCCEEE
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGLKKLL 172 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~ 172 (363)
...++.+.+.++.+..+....+..++.|++|++++|.++.++...+..+++|++|++++|+++.++ ..+.++++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 346899999999999988888999999999999999999999988999999999999999999775 5689999999999
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCC--CCccccCCCCCCEEEcccCcCCCcc-hhhcCCCCCC----EEec
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRNCLNS--LPGILGHLTALQHLDVSNNKLTTLP-TEIGLLSKLE----VLKA 245 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~i~~l~-~~~~~~~~L~----~L~l 245 (363)
+++|.+.. +....+..+++|++|++++|.++. +|..+..+++|++|++++|.++.++ ..+..+.+|+ .|++
T Consensus 107 l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 107 AVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp CTTSCCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCCCccc--cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 99999986 333357889999999999999986 6788999999999999999999774 4555555665 8999
Q ss_pred cCCcCccCCccccCCCCCcEEECCCCCCCCCChh-ccCCCCCCEEECCCCCCCC
Q 017986 246 NNNRISFLPESIGNCTSLIEIDLSSNLLSELPVT-LENLHYLKALHLDNNALKS 298 (363)
Q Consensus 246 ~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~-~~~~~~L~~L~L~~n~l~~ 298 (363)
++|.+..++.......+|++|++++|.++.+|.. +..+++|+.|++++|+++.
T Consensus 185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 9999998877666667999999999999988654 6889999999999999884
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.9e-21 Score=191.53 Aligned_cols=216 Identities=26% Similarity=0.273 Sum_probs=159.9
Q ss_pred CcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEE
Q 017986 93 PITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLL 172 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~ 172 (363)
.++.++.|.+.++.+..++. .++.|++|++++|.++.+|. .+++|++|++++|+++.+|.. +++|++|+
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~ 147 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELS 147 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEE
T ss_pred cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEE
Confidence 45678888888888877665 56888999999999888887 456788999999888888754 47888888
Q ss_pred cCCCCCCCCCCChHhhcC--------------CCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCC
Q 017986 173 LDANDLSNDSISWVQLAK--------------LKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLS 238 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~--------------l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~ 238 (363)
+++|.+.........+.. +++|+.|++++|.++.+|.. +++|+.|++++|.++.+|. .++
T Consensus 148 Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~---~~~ 221 (622)
T 3g06_A 148 VSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA---LPS 221 (622)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC---CCT
T ss_pred CcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC---CCC
Confidence 888887752110001111 14555555555555555432 2455666666666655543 246
Q ss_pred CCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCC
Q 017986 239 KLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNT 318 (363)
Q Consensus 239 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 318 (363)
+|+.|++++|.++.+| ..+++|+.|++++|.++.+|. .+++|+.|++++|.|+.+|.. +..+++|+.|++++|
T Consensus 222 ~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 222 GLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGN 294 (622)
T ss_dssp TCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSC
T ss_pred CCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCC
Confidence 7888999999888877 456889999999999998886 678999999999999999865 789999999999999
Q ss_pred ccchhhhhcccCch
Q 017986 319 EITMDALRQLEGWD 332 (363)
Q Consensus 319 ~i~~~~~~~l~~l~ 332 (363)
++++..+..+..+.
T Consensus 295 ~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 295 PLSERTLQALREIT 308 (622)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHHhcc
Confidence 99998777655443
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=5.6e-23 Score=186.53 Aligned_cols=201 Identities=20% Similarity=0.170 Sum_probs=166.1
Q ss_pred hhcccceeecccccCccCChhhh--hcCCceeEEEccCCcCccc-c----ccccCCCCCCEEEcCCCCCCCCCCChHhhc
Q 017986 117 RWKATGVIALAEHNLKAIPDEVW--DCSPFIRVLDIRTNSIQCV-P----DQIDGLTGLKKLLLDANDLSNDSISWVQLA 189 (363)
Q Consensus 117 ~~~~l~~L~l~~n~i~~i~~~~~--~~~~~L~~L~L~~n~i~~i-~----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 189 (363)
.++.|++|++++|.+....+..+ ..+++|++|++++|.++.. + ..+..+++|++|++++|.+.. +....+.
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~ 166 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA--FSCEQVR 166 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC--CCTTSCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch--hhHHHhc
Confidence 45669999999999986555444 7788999999999999853 2 234578999999999999975 4445688
Q ss_pred CCCCcCEEEcCCCcCCC---CC--ccccCCCCCCEEEcccCcCCCcchh----hcCCCCCCEEeccCCcCccC-CccccC
Q 017986 190 KLKHLTVLSISRNCLNS---LP--GILGHLTALQHLDVSNNKLTTLPTE----IGLLSKLEVLKANNNRISFL-PESIGN 259 (363)
Q Consensus 190 ~l~~L~~L~l~~n~l~~---l~--~~l~~l~~L~~L~l~~n~i~~l~~~----~~~~~~L~~L~l~~n~i~~~-~~~~~~ 259 (363)
.+++|++|++++|++.. ++ ..+..+++|++|++++|.++.++.. +..+++|++|++++|.+... |..+..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 99999999999998763 32 2236788999999999999876553 46789999999999999976 666655
Q ss_pred C---CCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchh
Q 017986 260 C---TSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 260 ~---~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
+ ++|++|++++|.++.+|..+. ++|+.|++++|+++.++. +..+++|+.|++++|+|+..
T Consensus 247 ~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSCC
T ss_pred ccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCCC
Confidence 5 799999999999999987664 899999999999998865 68899999999999999864
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=7.9e-23 Score=178.48 Aligned_cols=196 Identities=18% Similarity=0.298 Sum_probs=168.3
Q ss_pred CccCChhhhhcCCceeEEEccCCcCccccc-cccCCCCCCEEEcCCCC-CCCCCCChHhhcCCCCcCEEEcCC-CcCCCC
Q 017986 131 LKAIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTGLKKLLLDAND-LSNDSISWVQLAKLKHLTVLSISR-NCLNSL 207 (363)
Q Consensus 131 i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l 207 (363)
++.+|. + .++|++|++++|+++.++. .|..+++|++|++++|. +.. ++...|.++++|++|++++ |.++.+
T Consensus 23 l~~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~--i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 23 IQRIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ--LESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CSSCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE--ECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce--eCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 778887 2 3479999999999998865 68899999999999997 764 5545789999999999998 999988
Q ss_pred C-ccccCCCCCCEEEcccCcCCCcchhhcCCCCCC---EEeccCC-cCccCCc-cccCCCCCc-EEECCCCCCCCCChhc
Q 017986 208 P-GILGHLTALQHLDVSNNKLTTLPTEIGLLSKLE---VLKANNN-RISFLPE-SIGNCTSLI-EIDLSSNLLSELPVTL 280 (363)
Q Consensus 208 ~-~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~---~L~l~~n-~i~~~~~-~~~~~~~L~-~L~L~~n~l~~l~~~~ 280 (363)
+ ..+..+++|++|++++|.++.+|. +..+++|+ .|++++| .++.++. .+..+++|+ .|++++|.++.+|...
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 7 568889999999999999999886 88888888 9999999 9998875 488899999 9999999999887654
Q ss_pred cCCCCCCEEECCCCC-CCCCChhhhhCC-CCCCEEEccCCccchhhhhcccCchH
Q 017986 281 ENLHYLKALHLDNNA-LKSLPTTLFSKC-VQLSTLELHNTEITMDALRQLEGWDD 333 (363)
Q Consensus 281 ~~~~~L~~L~L~~n~-l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~ 333 (363)
...++|++|++++|+ ++.++..+|..+ ++|+.|++++|+++......+..++.
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~ 230 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKE 230 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSE
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCce
Confidence 344899999999995 999998889999 99999999999998765554544443
No 70
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1e-21 Score=187.45 Aligned_cols=218 Identities=20% Similarity=0.264 Sum_probs=189.6
Q ss_pred CCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEE
Q 017986 92 SPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKL 171 (363)
Q Consensus 92 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L 171 (363)
...+.++.+.+.++.+.+++ .+..++.|++|++++|.++.+| +..+++|++|++++|+++.++ +..+++|++|
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred hHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 35677899999999888774 6889999999999999999986 667789999999999999875 8889999999
Q ss_pred EcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccC-cCCCcchhhcCCCCCCEEeccCCcC
Q 017986 172 LLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNN-KLTTLPTEIGLLSKLEVLKANNNRI 250 (363)
Q Consensus 172 ~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n-~i~~l~~~~~~~~~L~~L~l~~n~i 250 (363)
++++|.+.. ++ +..+++|++|++++|.++.++ ++.+++|++|++++| .+..+ .+..+++|+.|++++|.+
T Consensus 112 ~L~~N~l~~--l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 112 NCDTNKLTK--LD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp ECCSSCCSC--CC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCe--ec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 999999886 33 678999999999999999875 788999999999999 45555 367889999999999999
Q ss_pred ccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccC
Q 017986 251 SFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEG 330 (363)
Q Consensus 251 ~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~ 330 (363)
+.+| +..+++|+.|++++|.++.++ ++.+++|+.|++++|+++.+| +..+++|+.|++++|++++..+..+..
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred ceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 9886 788999999999999999874 778999999999999999987 678999999999999999876655555
Q ss_pred ch
Q 017986 331 WD 332 (363)
Q Consensus 331 l~ 332 (363)
+.
T Consensus 256 L~ 257 (457)
T 3bz5_A 256 LT 257 (457)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=9.5e-22 Score=175.04 Aligned_cols=225 Identities=22% Similarity=0.328 Sum_probs=190.0
Q ss_pred cccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCC
Q 017986 96 SRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDA 175 (363)
Q Consensus 96 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~ 175 (363)
.+..+.+.+..+.+. .....++.++.|++.++.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC
Confidence 344555555555444 367889999999999999998875 567899999999999999875 788999999999999
Q ss_pred CCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCc-cccCCCCCCEEEcccCcCCCcchh-hcCCCCCCEEeccCCcCccC
Q 017986 176 NDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPG-ILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFL 253 (363)
Q Consensus 176 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~i~~~ 253 (363)
|.++. ++...+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.+
T Consensus 95 n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 95 NQLQS--LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp SCCCC--CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CccCc--cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 99985 444567899999999999999998864 478899999999999999988654 68899999999999999988
Q ss_pred Ccc-ccCCCCCcEEECCCCCCCCCCh-hccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCc
Q 017986 254 PES-IGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGW 331 (363)
Q Consensus 254 ~~~-~~~~~~L~~L~L~~n~l~~l~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l 331 (363)
+.. +..+++|++|++++|.+..++. .+..+++|+.|++++|.+. +.+++|+.+++..|.+++..+..+..+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 754 6889999999999999998854 4788999999999999776 346789999999999999988887776
Q ss_pred hHH
Q 017986 332 DDF 334 (363)
Q Consensus 332 ~~l 334 (363)
+..
T Consensus 246 ~~~ 248 (272)
T 3rfs_A 246 APD 248 (272)
T ss_dssp CGG
T ss_pred CCC
Confidence 653
No 72
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.1e-21 Score=170.68 Aligned_cols=176 Identities=30% Similarity=0.473 Sum_probs=125.3
Q ss_pred eeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcc
Q 017986 145 IRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVS 223 (363)
Q Consensus 145 L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~ 223 (363)
.++++++++.++.+|..+. ++++.|++++|.+.. +....+.++++|++|++++|.++.++ ..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLAT--LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCc--cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4455555555555554432 455666666666553 22234556666666666666666554 345666677777777
Q ss_pred cCcCCCcc-hhhcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEECCCCCCCCCCh-hccCCCCCCEEECCCCCCCCCC
Q 017986 224 NNKLTTLP-TEIGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKSLP 300 (363)
Q Consensus 224 ~n~i~~l~-~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L~~n~l~~l~~-~~~~~~~L~~L~L~~n~l~~~~ 300 (363)
+|.++.++ ..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++. .+..+++|++|++++|.++.++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77776664 3456777788888888877777654 5778888999999998888865 5788899999999999999998
Q ss_pred hhhhhCCCCCCEEEccCCccchhh
Q 017986 301 TTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 301 ~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
+..|..+++|+.|++++|++++..
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHHHhCCCCCCEEEeeCCceeCCc
Confidence 888889999999999999998873
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.2e-22 Score=193.69 Aligned_cols=206 Identities=18% Similarity=0.234 Sum_probs=176.0
Q ss_pred hhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCE
Q 017986 117 RWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTV 196 (363)
Q Consensus 117 ~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 196 (363)
.++.|++|++++|.++.+++..+..+++|++|+|++|.++.+++ +..+++|++|++++|.++. +...++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-------l~~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-------LLVGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-------EEECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-------CCCCCCcCE
Confidence 45689999999999999998889999999999999999997654 8899999999999999874 234489999
Q ss_pred EEcCCCcCCCCCccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCccC-Ccccc-CCCCCcEEECCCCCC
Q 017986 197 LSISRNCLNSLPGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFL-PESIG-NCTSLIEIDLSSNLL 273 (363)
Q Consensus 197 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~-~~~~L~~L~L~~n~l 273 (363)
|++++|.++.++. ..+++|++|++++|.++.+ |..+..+++|+.|++++|.++.+ |..+. .+++|+.|+|++|.+
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999998864 3568899999999999987 55678899999999999999964 44554 789999999999999
Q ss_pred CCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHH
Q 017986 274 SELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335 (363)
Q Consensus 274 ~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~ 335 (363)
+.++. ...+++|+.|+|++|.++.+++. +..+++|+.|++++|.+++. +..+..+++|.
T Consensus 182 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~ 240 (487)
T 3oja_A 182 YDVKG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLE 240 (487)
T ss_dssp CEEEC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEE-CTTCCCCTTCC
T ss_pred ccccc-cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCccc-chhhccCCCCC
Confidence 98863 44689999999999999999887 78899999999999999963 34455555443
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=3e-21 Score=171.58 Aligned_cols=197 Identities=26% Similarity=0.419 Sum_probs=167.6
Q ss_pred ccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccccc-ccCCCCCCEEEcCC
Q 017986 97 RKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQ-IDGLTGLKKLLLDA 175 (363)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~-~~~l~~L~~L~L~~ 175 (363)
.+.+.+.+..+..++... .+.++.|++++|.++.++...|..+++|++|++++|.++.++.. |..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 455666666666555322 25789999999999999988889999999999999999988655 57899999999999
Q ss_pred CCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccCcCCCcchh-hcCCCCCCEEeccCCcCccC
Q 017986 176 NDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFL 253 (363)
Q Consensus 176 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~i~~~ 253 (363)
|.+.. ++...+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.+
T Consensus 95 n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 95 NKLQA--LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SCCCC--CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcCCc--CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99985 44456788999999999999999886 4578899999999999999988654 78899999999999999988
Q ss_pred Cc-cccCCCCCcEEECCCCCCCCCCh-hccCCCCCCEEECCCCCCCC
Q 017986 254 PE-SIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNALKS 298 (363)
Q Consensus 254 ~~-~~~~~~~L~~L~L~~n~l~~l~~-~~~~~~~L~~L~L~~n~l~~ 298 (363)
+. .+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 75 47889999999999999998865 47889999999999998763
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.2e-21 Score=177.51 Aligned_cols=197 Identities=25% Similarity=0.366 Sum_probs=176.9
Q ss_pred CcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEE
Q 017986 93 PITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLL 172 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~ 172 (363)
.+..++.+.+.++.+..+. .+..++.|++|++++|.++.++. +..+++|++|++++|+++.++ .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 4567888999988888765 68889999999999999999988 778899999999999999886 688999999999
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCcc
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISF 252 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~ 252 (363)
+++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|+.|++++|.++.
T Consensus 114 l~~n~l~~--~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITD--VT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCC--CG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCC--ch--hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc
Confidence 99999986 33 48899999999999999998876 8889999999999999998866 8899999999999999998
Q ss_pred CCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChh
Q 017986 253 LPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTT 302 (363)
Q Consensus 253 ~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~ 302 (363)
++. +..+++|++|++++|.+..++ .+..+++|+.|++++|.++..+..
T Consensus 188 ~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 188 ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCee
Confidence 865 788999999999999999887 488999999999999999877653
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.9e-21 Score=174.64 Aligned_cols=180 Identities=29% Similarity=0.328 Sum_probs=161.8
Q ss_pred hhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCC
Q 017986 139 WDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQ 218 (363)
Q Consensus 139 ~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~ 218 (363)
+..++++++++++++.++.+|..+ .++++.|++++|.+.. +....+..+++|++|++++|.++.++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYT--FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSE--EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCc--cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 345678999999999999998766 3789999999999985 4445789999999999999999988764 7889999
Q ss_pred EEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCC-ccccCCCCCcEEECCCCCCCCCCh-hccCCCCCCEEECCCCCC
Q 017986 219 HLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLP-ESIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNNAL 296 (363)
Q Consensus 219 ~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~L~~n~l~~l~~-~~~~~~~L~~L~L~~n~l 296 (363)
+|++++|.++.+|..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999999999999988899999999999999999887 468999999999999999998864 468899999999999999
Q ss_pred CCCChhhhhCCCCCCEEEccCCccchh
Q 017986 297 KSLPTTLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 297 ~~~~~~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
+.++..+|..+++|+.|++++|+++..
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCcc
Confidence 999999999999999999999999854
No 77
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=1.7e-21 Score=189.69 Aligned_cols=189 Identities=30% Similarity=0.425 Sum_probs=162.9
Q ss_pred ccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEc
Q 017986 120 ATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSI 199 (363)
Q Consensus 120 ~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 199 (363)
.++.|++++|.++.+|..++ ++|++|+|++|+++.+| ..+++|++|++++|.++. ++. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip~--l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LPE--LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC--CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cch--hhc--CCCEEEC
Confidence 89999999999999998764 67999999999999988 457999999999999986 442 333 8999999
Q ss_pred CCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChh
Q 017986 200 SRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVT 279 (363)
Q Consensus 200 ~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~ 279 (363)
++|.++.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.|+.+|.
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 9999999987 67899999999999998876 57899999999999999988 55 899999999999999987
Q ss_pred ccCCCCC-------CEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchH
Q 017986 280 LENLHYL-------KALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDD 333 (363)
Q Consensus 280 ~~~~~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 333 (363)
+.. +| +.|+|++|.|+.+|..++. +++|+.|+|++|++++..+..+..+..
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 543 77 9999999999999987655 999999999999999987776655443
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=6.4e-22 Score=179.71 Aligned_cols=202 Identities=19% Similarity=0.210 Sum_probs=168.7
Q ss_pred cccccccccccccccCCCCChH--HhhcccceeecccccCccCChhhhhcC-----CceeEEEccCCcCcccc-ccccCC
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSS--ERWKATGVIALAEHNLKAIPDEVWDCS-----PFIRVLDIRTNSIQCVP-DQIDGL 165 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~--~~~~~l~~L~l~~n~i~~i~~~~~~~~-----~~L~~L~L~~n~i~~i~-~~~~~l 165 (363)
...++.+.+.++.+.+..+..+ ..++.|++|++++|.++.+|.. +..+ ++|++|++++|+++.++ ..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5678999999999987665554 8899999999999999998643 4443 89999999999999885 678999
Q ss_pred CCCCEEEcCCCCCCCCC--CChHhhcCCCCcCEEEcCCCcCCCCC----ccccCCCCCCEEEcccCcCCCcc--hhhcCC
Q 017986 166 TGLKKLLLDANDLSNDS--ISWVQLAKLKHLTVLSISRNCLNSLP----GILGHLTALQHLDVSNNKLTTLP--TEIGLL 237 (363)
Q Consensus 166 ~~L~~L~L~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~l~----~~l~~l~~L~~L~l~~n~i~~l~--~~~~~~ 237 (363)
++|++|++++|.+.+.. +....+..+++|++|++++|.++.++ ..+..+++|++|++++|.++..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 99999999999975310 11112378999999999999999554 33457789999999999998754 445678
Q ss_pred CCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCC
Q 017986 238 SKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSL 299 (363)
Q Consensus 238 ~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~ 299 (363)
++|+.|++++|.++.+|..+. ++|++|++++|.++.+|. +..+++|++|++++|++++.
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 999999999999999988766 899999999999999976 88999999999999998864
No 79
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=2.8e-21 Score=173.72 Aligned_cols=170 Identities=28% Similarity=0.387 Sum_probs=82.0
Q ss_pred ceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcc
Q 017986 144 FIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVS 223 (363)
Q Consensus 144 ~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~ 223 (363)
+|++|++++|.+..++ .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~--~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD--IK--PLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC--CG--GGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred cccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCC--Cc--ccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 3444444444444442 23444444444444444443 11 14444444444444444444433 4444455555555
Q ss_pred cCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhh
Q 017986 224 NNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTL 303 (363)
Q Consensus 224 ~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~ 303 (363)
+|.++.+ +.+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++.
T Consensus 121 ~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-- 195 (291)
T 1h6t_A 121 HNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-- 195 (291)
T ss_dssp TSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--
T ss_pred CCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--
Confidence 5544444 2344445555555555555444 334455555555555555555443 4555555555555555555532
Q ss_pred hhCCCCCCEEEccCCccchhh
Q 017986 304 FSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 304 ~~~l~~L~~L~L~~n~i~~~~ 324 (363)
+..+++|+.|++++|+++...
T Consensus 196 l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GTTCTTCSEEEEEEEEEECCC
T ss_pred hccCCCCCEEECcCCcccCCc
Confidence 455555555555555555443
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=2.4e-20 Score=177.94 Aligned_cols=215 Identities=26% Similarity=0.306 Sum_probs=113.3
Q ss_pred CCCcccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCE
Q 017986 91 QSPITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKK 170 (363)
Q Consensus 91 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~ 170 (363)
....+.++.+.+.++.+..++.. ...|++|++++|.++.+|. +..+++|++|++++|+++.+|.. .++|++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~ 219 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDL---PLSLES 219 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCC---CTTCCE
T ss_pred cCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCCC---cCcccE
Confidence 33444555555555555443321 1355555555555555542 34445555555555555544332 134555
Q ss_pred EEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccc-----------------cCCCCCCEEEcccCcCCCcchh
Q 017986 171 LLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGIL-----------------GHLTALQHLDVSNNKLTTLPTE 233 (363)
Q Consensus 171 L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l-----------------~~l~~L~~L~l~~n~i~~l~~~ 233 (363)
|++++|.+.. ++ .+..+++|++|++++|.++.+|... ..+++|++|++++|.++.++.
T Consensus 220 L~l~~n~l~~--lp--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~- 294 (454)
T 1jl5_A 220 IVAGNNILEE--LP--ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE- 294 (454)
T ss_dssp EECCSSCCSS--CC--CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESC-
T ss_pred EECcCCcCCc--cc--ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccC-
Confidence 5555554442 22 1344445555555555444443211 011344444555444443321
Q ss_pred hcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEE
Q 017986 234 IGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTL 313 (363)
Q Consensus 234 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 313 (363)
..++|+.|++++|.++.++. ..++|++|++++|.++.+|.. +++|+.|++++|.++.+|. .+++|+.|
T Consensus 295 --~~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~----~l~~L~~L 362 (454)
T 1jl5_A 295 --LPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQL 362 (454)
T ss_dssp --CCTTCCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred --cCCcCCEEECcCCcCCcccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc----hhhhccEE
Confidence 11344555555554443321 114777788888777776643 4778888888888887765 35788888
Q ss_pred EccCCccch--hhhhcccCc
Q 017986 314 ELHNTEITM--DALRQLEGW 331 (363)
Q Consensus 314 ~L~~n~i~~--~~~~~l~~l 331 (363)
++++|++++ ..+..+..+
T Consensus 363 ~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 363 HVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCEE
T ss_pred ECCCCCCCcCCCChHHHHhh
Confidence 888888887 555555544
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.3e-22 Score=189.81 Aligned_cols=232 Identities=19% Similarity=0.196 Sum_probs=184.6
Q ss_pred CcccccccccccccccCCCCCh----HHhhcccceeecccccCccC----Chhh------hhcCCceeEEEccCCcCcc-
Q 017986 93 PITSRKTDRVRDMKMVPVGKTS----SERWKATGVIALAEHNLKAI----PDEV------WDCSPFIRVLDIRTNSIQC- 157 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~~~----~~~~~~l~~L~l~~n~i~~i----~~~~------~~~~~~L~~L~L~~n~i~~- 157 (363)
..+.++.+.+.++.+...+... +..++.|++|++++|.+..+ |..+ +..+++|++|+|++|+++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 3456889999998887755444 44789999999999876643 4433 3567999999999999985
Q ss_pred ----ccccccCCCCCCEEEcCCCCCCCCCCC--hHhhcCC---------CCcCEEEcCCCcCC--CCC---ccccCCCCC
Q 017986 158 ----VPDQIDGLTGLKKLLLDANDLSNDSIS--WVQLAKL---------KHLTVLSISRNCLN--SLP---GILGHLTAL 217 (363)
Q Consensus 158 ----i~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~~l---------~~L~~L~l~~n~l~--~l~---~~l~~l~~L 217 (363)
++..+..+++|++|++++|.+...... ...+..+ ++|++|++++|.++ .++ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 567788899999999999998631111 0123334 89999999999997 344 456788999
Q ss_pred CEEEcccCcCCC-----c-chhhcCCCCCCEEeccCCcCc-----cCCccccCCCCCcEEECCCCCCCCC-----Chhcc
Q 017986 218 QHLDVSNNKLTT-----L-PTEIGLLSKLEVLKANNNRIS-----FLPESIGNCTSLIEIDLSSNLLSEL-----PVTLE 281 (363)
Q Consensus 218 ~~L~l~~n~i~~-----l-~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~~~L~~L~L~~n~l~~l-----~~~~~ 281 (363)
++|++++|.++. + +..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.++.. +..+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 999999999882 3 337788999999999999984 5667788999999999999999853 55553
Q ss_pred --CCCCCCEEECCCCCCCC-----CChhhhhCCCCCCEEEccCCccchhh
Q 017986 282 --NLHYLKALHLDNNALKS-----LPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 282 --~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
.+++|++|+|++|.++. ++..++.++++|+.|++++|++++..
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 38999999999999997 76666577999999999999999876
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=2.7e-20 Score=183.27 Aligned_cols=211 Identities=30% Similarity=0.340 Sum_probs=157.6
Q ss_pred ccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcC
Q 017986 95 TSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLD 174 (363)
Q Consensus 95 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~ 174 (363)
+.++.+.+.++.+..+.. .++.|++|++++|.++.+|. .+++|++|++++|+++.+|. .+++|+.|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence 578999999999887775 46889999999999999987 56889999999999998876 57899999999
Q ss_pred CCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCC-----------------CCCCEEEcccCcCCCcchhhcCC
Q 017986 175 ANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHL-----------------TALQHLDVSNNKLTTLPTEIGLL 237 (363)
Q Consensus 175 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l-----------------~~L~~L~l~~n~i~~l~~~~~~~ 237 (363)
+|.++. ++ ..+++|++|++++|.++.+|..+..+ ++|+.|++++|.++.+|. .+
T Consensus 130 ~N~l~~--lp----~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~---~~ 200 (622)
T 3g06_A 130 GNQLTS--LP----VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT---LP 200 (622)
T ss_dssp SSCCSC--CC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CC
T ss_pred CCCCCc--CC----CCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC---cc
Confidence 999885 33 23588999999999888776432211 444555555555554433 13
Q ss_pred CCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccC
Q 017986 238 SKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHN 317 (363)
Q Consensus 238 ~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 317 (363)
++|+.|++++|.++.+|. .+++|+.|++++|.++.+| ..+++|+.|++++|.|+.+|. .+++|+.|++++
T Consensus 201 ~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~ 270 (622)
T 3g06_A 201 SELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYR 270 (622)
T ss_dssp TTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred chhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCC
Confidence 455555555555555543 2367888888888888887 456889999999999998876 568899999999
Q ss_pred CccchhhhhcccCchHHHH
Q 017986 318 TEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 318 n~i~~~~~~~l~~l~~l~~ 336 (363)
|.|+ ..+..+..+++|+.
T Consensus 271 N~L~-~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 271 NQLT-RLPESLIHLSSETT 288 (622)
T ss_dssp SCCC-SCCGGGGGSCTTCE
T ss_pred CCCC-cCCHHHhhccccCE
Confidence 9998 33455555555543
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=176.76 Aligned_cols=201 Identities=19% Similarity=0.194 Sum_probs=167.0
Q ss_pred ccccccccccccccCCCCChH--HhhcccceeecccccCccCCh----hhhhcCCceeEEEccCCcCcccc-ccccCCCC
Q 017986 95 TSRKTDRVRDMKMVPVGKTSS--ERWKATGVIALAEHNLKAIPD----EVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTG 167 (363)
Q Consensus 95 ~~l~~l~~~~~~~~~~~~~~~--~~~~~l~~L~l~~n~i~~i~~----~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~ 167 (363)
..++.+.+.++.+.+..+..+ ..++.|++|++++|.++.... ..+..+++|++|++++|++..++ ..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 348999999999988777777 889999999999999985322 33346889999999999999775 56889999
Q ss_pred CCEEEcCCCCCCCCC-C-ChHhhcCCCCcCEEEcCCCcCCCCCc----cccCCCCCCEEEcccCcCCCc-chhhcCC---
Q 017986 168 LKKLLLDANDLSNDS-I-SWVQLAKLKHLTVLSISRNCLNSLPG----ILGHLTALQHLDVSNNKLTTL-PTEIGLL--- 237 (363)
Q Consensus 168 L~~L~L~~n~~~~~~-~-~~~~~~~l~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~~n~i~~l-~~~~~~~--- 237 (363)
|++|++++|.+.... + ....+..+++|++|++++|.++.++. .+..+++|++|++++|.++.. |..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 999999999875310 0 01123678999999999999987764 356789999999999999977 7666665
Q ss_pred CCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCC
Q 017986 238 SKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKS 298 (363)
Q Consensus 238 ~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~ 298 (363)
++|++|++++|.++.+|..+. ++|++|++++|.++.+|. +..+++|+.|++++|++++
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 699999999999999987764 799999999999998874 6788999999999999875
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=7.2e-20 Score=160.89 Aligned_cols=176 Identities=28% Similarity=0.447 Sum_probs=152.2
Q ss_pred cccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEE
Q 017986 119 KATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVL 197 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L 197 (363)
...+.++++++.++.+|..+. +.+++|++++|.++.++ ..|..+++|++|++++|.+.. +....+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc--cCHhHhccCCcCCEE
Confidence 346789999999999997654 57999999999999774 468899999999999999986 444568889999999
Q ss_pred EcCCCcCCCCC-ccccCCCCCCEEEcccCcCCCcchh-hcCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCCCCCC
Q 017986 198 SISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLLS 274 (363)
Q Consensus 198 ~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~n~l~ 274 (363)
++++|.++.++ ..+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++. .+..+++|++|++++|.++
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999999886 5578899999999999999988654 5889999999999999998876 5888999999999999999
Q ss_pred CCCh-hccCCCCCCEEECCCCCCCCC
Q 017986 275 ELPV-TLENLHYLKALHLDNNALKSL 299 (363)
Q Consensus 275 ~l~~-~~~~~~~L~~L~L~~n~l~~~ 299 (363)
.++. .+..+++|+.|++++|.+...
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8864 678899999999999998754
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=2.9e-20 Score=167.02 Aligned_cols=178 Identities=28% Similarity=0.387 Sum_probs=159.4
Q ss_pred hHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCC
Q 017986 114 SSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKH 193 (363)
Q Consensus 114 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 193 (363)
.+..++.++.|++++|.++.++. +..+++|++|++++|+++.++. +..+++|++|++++|.+.. ++ .+..+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--~~--~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD--LS--SLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--GG--GGTTCTT
T ss_pred chhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC--Ch--hhccCCC
Confidence 56789999999999999999875 6678999999999999998876 8899999999999999885 33 4889999
Q ss_pred cCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCC
Q 017986 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLL 273 (363)
Q Consensus 194 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l 273 (363)
|++|++++|.++.++ .+..+++|++|++++|.++.+ +.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus 114 L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 114 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 999999999999885 478899999999999999988 568899999999999999998876 88999999999999999
Q ss_pred CCCChhccCCCCCCEEECCCCCCCCCChh
Q 017986 274 SELPVTLENLHYLKALHLDNNALKSLPTT 302 (363)
Q Consensus 274 ~~l~~~~~~~~~L~~L~L~~n~l~~~~~~ 302 (363)
+.++ .+..+++|+.|++++|.++..+..
T Consensus 191 ~~l~-~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 191 SDLR-ALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp CBCG-GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred CCCh-hhccCCCCCEEECcCCcccCCccc
Confidence 9987 488999999999999998876643
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=2.6e-20 Score=183.16 Aligned_cols=177 Identities=28% Similarity=0.411 Sum_probs=116.9
Q ss_pred hHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCC
Q 017986 114 SSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKH 193 (363)
Q Consensus 114 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 193 (363)
.+..+..|+.|++++|.+..++. +..+++|+.|+|++|++..++. +..+++|+.|+|++|.+.. ++ .+..+++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~--l~--~l~~l~~ 110 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD--LS--SLKDLKK 110 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC--CT--TSTTCTT
T ss_pred chhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC--Ch--hhccCCC
Confidence 45666777777777777776653 4556777777777777776654 6667777777777777664 22 4566677
Q ss_pred cCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCC
Q 017986 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLL 273 (363)
Q Consensus 194 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l 273 (363)
|+.|++++|.+..++. +..+++|+.|++++|.++.+ ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|.+
T Consensus 111 L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 111 LKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp CCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence 7777777777666543 56666777777777766665 445666677777777776665544 66666677777777766
Q ss_pred CCCChhccCCCCCCEEECCCCCCCCCCh
Q 017986 274 SELPVTLENLHYLKALHLDNNALKSLPT 301 (363)
Q Consensus 274 ~~l~~~~~~~~~L~~L~L~~n~l~~~~~ 301 (363)
+.++ .+..+++|+.|+|++|.++..|.
T Consensus 188 ~~l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 188 SDLR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CBCG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCh-HHccCCCCCEEEccCCcCcCCcc
Confidence 6664 45666667777776666655443
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=8.2e-20 Score=174.21 Aligned_cols=198 Identities=26% Similarity=0.400 Sum_probs=135.2
Q ss_pred cccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCC
Q 017986 98 KTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDAND 177 (363)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~ 177 (363)
+.+.+.++.+..++.. .+.+++|++++|.++.+|.. .++|++|++++|+++.++.. .++|++|++++|.
T Consensus 74 ~~L~l~~~~l~~lp~~----~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~ 142 (454)
T 1jl5_A 74 HELELNNLGLSSLPEL----PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ 142 (454)
T ss_dssp SEEECTTSCCSCCCSC----CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC
T ss_pred CEEEecCCccccCCCC----cCCCCEEEccCCcCCccccc----cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC
Confidence 5555555555554431 35667777777777666642 25677777777777665432 2577777777777
Q ss_pred CCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccc
Q 017986 178 LSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESI 257 (363)
Q Consensus 178 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~ 257 (363)
+.. ++ .+.++++|++|++++|.++.+|... .+|++|++++|.++.+| .+..+++|+.|++++|.++.+|...
T Consensus 143 l~~--lp--~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~ 214 (454)
T 1jl5_A 143 LEK--LP--ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP 214 (454)
T ss_dssp CSS--CC--CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC
T ss_pred CCC--Cc--ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc
Confidence 764 33 3677777888888877777766532 47777888888777776 4677778888888888777665432
Q ss_pred cCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccch
Q 017986 258 GNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITM 322 (363)
Q Consensus 258 ~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 322 (363)
++|++|++++|.+..+| .+..+++|++|++++|+++.++.. +++|+.|++++|++++
T Consensus 215 ---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 215 ---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTD 271 (454)
T ss_dssp ---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSC
T ss_pred ---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc----ccccCEEECCCCcccc
Confidence 47788888888887777 477788888888888888776642 3677777777777665
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=4e-20 Score=181.80 Aligned_cols=200 Identities=25% Similarity=0.317 Sum_probs=152.2
Q ss_pred hcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEE
Q 017986 118 WKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVL 197 (363)
Q Consensus 118 ~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L 197 (363)
+..+..+.+..+.+..+.. ...++.|+.|++++|.+..++ .+..+++|+.|+|++|.+.. ++ .+..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~--~~--~l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD--IK--PLTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC--CG--GGGGCTTCCEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC--Ch--hhccCCCCCEE
Confidence 3344445566666665544 334567888888888888775 57778888888888888875 22 27788888888
Q ss_pred EcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCC
Q 017986 198 SISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELP 277 (363)
Q Consensus 198 ~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~ 277 (363)
+|++|.+..++ .+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+..++
T Consensus 93 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 93 FLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp ECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred ECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch
Confidence 88888888776 4777888888888888888764 477888888888888888877 56778888888888888888776
Q ss_pred hhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccC
Q 017986 278 VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEG 330 (363)
Q Consensus 278 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~ 330 (363)
. +..+++|+.|+|++|.|+.++. +..+++|+.|+|++|++++.....+..
T Consensus 170 ~-l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 170 P-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp G-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred h-hccCCCCCEEECcCCCCCCChH--HccCCCCCEEEccCCcCcCCccccccc
Confidence 4 7788888888888888888743 778888888888888887765544433
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=4.7e-21 Score=177.67 Aligned_cols=234 Identities=15% Similarity=0.172 Sum_probs=178.3
Q ss_pred CcccccccccccccccCCCC----ChHHhhc-ccceeecccccCccCChhhhhcC-----CceeEEEccCCcCccccc--
Q 017986 93 PITSRKTDRVRDMKMVPVGK----TSSERWK-ATGVIALAEHNLKAIPDEVWDCS-----PFIRVLDIRTNSIQCVPD-- 160 (363)
Q Consensus 93 ~~~~l~~l~~~~~~~~~~~~----~~~~~~~-~l~~L~l~~n~i~~i~~~~~~~~-----~~L~~L~L~~n~i~~i~~-- 160 (363)
....++.+.+.++.+...+. ..+..++ .|++|++++|.++......+..+ ++|++|++++|.++..+.
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 34458999999999988887 6677777 89999999999998876655553 889999999999985532
Q ss_pred ---cccCC-CCCCEEEcCCCCCCCCCCCh--HhhcC-CCCcCEEEcCCCcCCC-----CCccccCCC-CCCEEEcccCcC
Q 017986 161 ---QIDGL-TGLKKLLLDANDLSNDSISW--VQLAK-LKHLTVLSISRNCLNS-----LPGILGHLT-ALQHLDVSNNKL 227 (363)
Q Consensus 161 ---~~~~l-~~L~~L~L~~n~~~~~~~~~--~~~~~-l~~L~~L~l~~n~l~~-----l~~~l~~l~-~L~~L~l~~n~i 227 (363)
.+..+ ++|++|++++|.++...... ..+.. .++|++|++++|.++. ++..+..++ +|++|++++|.+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 24555 89999999999997532211 12344 3589999999999883 344455555 899999999999
Q ss_pred CCcc-h----hhcCC-CCCCEEeccCCcCcc-----CCccccC-CCCCcEEECCCCCCCCCC-----hhccCCCCCCEEE
Q 017986 228 TTLP-T----EIGLL-SKLEVLKANNNRISF-----LPESIGN-CTSLIEIDLSSNLLSELP-----VTLENLHYLKALH 290 (363)
Q Consensus 228 ~~l~-~----~~~~~-~~L~~L~l~~n~i~~-----~~~~~~~-~~~L~~L~L~~n~l~~l~-----~~~~~~~~L~~L~ 290 (363)
+... . .+... ++|+.|++++|.++. ++..+.. .++|++|++++|.++..+ ..+..+++|++|+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 8553 2 34555 599999999999986 4555555 469999999999998763 2346778999999
Q ss_pred CCCCCCCCCChh-------hhhCCCCCCEEEccCCccchhhhh
Q 017986 291 LDNNALKSLPTT-------LFSKCVQLSTLELHNTEITMDALR 326 (363)
Q Consensus 291 L~~n~l~~~~~~-------~~~~l~~L~~L~L~~n~i~~~~~~ 326 (363)
+++|.+..+... .+..+++|+.|++++|++.+..+.
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 999987666543 456778899999999999887433
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=6e-21 Score=174.87 Aligned_cols=225 Identities=19% Similarity=0.242 Sum_probs=168.2
Q ss_pred ccccccccccccCCCCChHHhh--cccceeecccccCccCChhhhhcCCceeEEEccCCcCcc--ccccccCCCCCCEEE
Q 017986 97 RKTDRVRDMKMVPVGKTSSERW--KATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQC--VPDQIDGLTGLKKLL 172 (363)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~~~~--~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~--i~~~~~~l~~L~~L~ 172 (363)
.+.+.+.++.+. ...+..+ ..++.+++++|.+...+...+ .+++|++|++++|.++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 445555555433 3445555 788899999998887776654 46889999999998873 666778889999999
Q ss_pred cCCCCCCCCCCChHhhcCCCCcCEEEcCCC-cCCC--CCccccCCCCCCEEEcccC-cCCC--cchhhcCCC-CCCEEec
Q 017986 173 LDANDLSNDSISWVQLAKLKHLTVLSISRN-CLNS--LPGILGHLTALQHLDVSNN-KLTT--LPTEIGLLS-KLEVLKA 245 (363)
Q Consensus 173 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--l~~~l~~l~~L~~L~l~~n-~i~~--l~~~~~~~~-~L~~L~l 245 (363)
+++|.+... ....+..+++|++|++++| .++. ++..+..+++|++|++++| .++. ++..+..++ +|++|++
T Consensus 125 L~~~~l~~~--~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 125 LEGLRLSDP--IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp CTTCBCCHH--HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred CcCcccCHH--HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999887642 2245777899999999998 6773 5666778889999999999 8874 566678888 9999999
Q ss_pred cCCc--Cc--cCCccccCCCCCcEEECCCCC-CC-CCChhccCCCCCCEEECCCCC-CCCCChhhhhCCCCCCEEEccCC
Q 017986 246 NNNR--IS--FLPESIGNCTSLIEIDLSSNL-LS-ELPVTLENLHYLKALHLDNNA-LKSLPTTLFSKCVQLSTLELHNT 318 (363)
Q Consensus 246 ~~n~--i~--~~~~~~~~~~~L~~L~L~~n~-l~-~l~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 318 (363)
++|. ++ .++..+..+++|++|++++|. ++ ..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9984 43 455566778899999999998 55 446677888999999999984 33332235778899999999998
Q ss_pred ccchhhhhcc
Q 017986 319 EITMDALRQL 328 (363)
Q Consensus 319 ~i~~~~~~~l 328 (363)
++.+.+..+
T Consensus 283 -i~~~~~~~l 291 (336)
T 2ast_B 283 -VPDGTLQLL 291 (336)
T ss_dssp -SCTTCHHHH
T ss_pred -cCHHHHHHH
Confidence 776655444
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=3.5e-20 Score=170.93 Aligned_cols=212 Identities=22% Similarity=0.224 Sum_probs=154.7
Q ss_pred ccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCc-ccc-ccccCCCCCCE-EEcCC
Q 017986 99 TDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQ-CVP-DQIDGLTGLKK-LLLDA 175 (363)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~-~i~-~~~~~l~~L~~-L~L~~ 175 (363)
.....+..+..++..- ...+++|++++|.|+.+|.+.|..+++|++|+|++|++. .++ ..|.+++++.. +.+.+
T Consensus 13 ~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3445555555554322 356888999999999999888888899999999999875 454 35778888775 55566
Q ss_pred CCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCc-cccCCCCCCEEEccc-CcCCCcch-hhcCC-CCCCEEeccCCcCc
Q 017986 176 NDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPG-ILGHLTALQHLDVSN-NKLTTLPT-EIGLL-SKLEVLKANNNRIS 251 (363)
Q Consensus 176 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~-n~i~~l~~-~~~~~-~~L~~L~l~~n~i~ 251 (363)
|.+.. ++...|..+++|++|++++|.+..++. .+.....+..+++.+ +.+..++. .+..+ ..++.|++++|.++
T Consensus 90 N~l~~--l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 90 NNLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp TTCCE--ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred Ccccc--cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 77774 444568888999999999998887764 334455677788765 46777654 34444 46888999999999
Q ss_pred cCCccccCCCCCcEEECC-CCCCCCCCh-hccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCC
Q 017986 252 FLPESIGNCTSLIEIDLS-SNLLSELPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNT 318 (363)
Q Consensus 252 ~~~~~~~~~~~L~~L~L~-~n~l~~l~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 318 (363)
.++.......+++++++. +|.++.+|. .|..+++|+.|++++|+|+.+|...|. +|+.|.+.++
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~ 233 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARST 233 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccC
Confidence 888776677788899886 477888864 568889999999999999998876544 5556655544
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.3e-19 Score=174.72 Aligned_cols=187 Identities=23% Similarity=0.310 Sum_probs=159.4
Q ss_pred cccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCC
Q 017986 96 SRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDA 175 (363)
Q Consensus 96 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~ 175 (363)
.++.+.+.++.+..++... .+.|++|++++|.|+.+| ..+++|++|++++|+++.+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 6788888888887766543 378999999999999999 346889999999999999987 654 999999999
Q ss_pred CCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCc
Q 017986 176 NDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPE 255 (363)
Q Consensus 176 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 255 (363)
|.++. ++. .+++|+.|++++|.++.+|. .+++|++|++++|.++.+|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~l~~--lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 130 NQLTM--LPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp SCCSC--CCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred CcCCC--CCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh
Confidence 99986 442 68899999999999999887 57899999999999999987 55 899999999999999987
Q ss_pred cccCCCCC-------cEEECCCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCC
Q 017986 256 SIGNCTSL-------IEIDLSSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKC 307 (363)
Q Consensus 256 ~~~~~~~L-------~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 307 (363)
+.. +| +.|++++|.|+.+|..+..+++|+.|+|++|.++...+..+..+
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 544 77 99999999999999888889999999999999996665555543
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.81 E-value=8.2e-20 Score=161.65 Aligned_cols=172 Identities=24% Similarity=0.297 Sum_probs=107.3
Q ss_pred hhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCE
Q 017986 117 RWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTV 196 (363)
Q Consensus 117 ~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 196 (363)
.+..+..++++++.+++++ .+..+++|++|++++|.++.++ .+..+++|+.|++++|.+.. ++. +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~--~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD--LSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC--CGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC--Chh--hccCCCCCE
Confidence 4555666677777777666 2445567777777777777765 56667777777777777764 221 666777777
Q ss_pred EEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCC
Q 017986 197 LSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSEL 276 (363)
Q Consensus 197 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l 276 (363)
|++++|.++.++.... ++|++|++++|.++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+
T Consensus 90 L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred EECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 7777777766654322 66666666666666553 3555666666666666666553 455556666666666666555
Q ss_pred ChhccCCCCCCEEECCCCCCCCCC
Q 017986 277 PVTLENLHYLKALHLDNNALKSLP 300 (363)
Q Consensus 277 ~~~~~~~~~L~~L~L~~n~l~~~~ 300 (363)
..+..+++|+.|++++|.++..+
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECCC
T ss_pred -HHhccCCCCCEEeCCCCcccCCc
Confidence 34555556666666666555444
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=2.2e-21 Score=185.48 Aligned_cols=232 Identities=15% Similarity=0.150 Sum_probs=136.4
Q ss_pred cccccccccccccCCCC----ChHHhhcccceeecccccCccCChhhh-----hcCCceeEEEccCCcCcc-----cccc
Q 017986 96 SRKTDRVRDMKMVPVGK----TSSERWKATGVIALAEHNLKAIPDEVW-----DCSPFIRVLDIRTNSIQC-----VPDQ 161 (363)
Q Consensus 96 ~l~~l~~~~~~~~~~~~----~~~~~~~~l~~L~l~~n~i~~i~~~~~-----~~~~~L~~L~L~~n~i~~-----i~~~ 161 (363)
.++.+.+.++.+...+. ..+..++.|++|++++|.+...+...+ ...++|++|++++|.++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 45555555555544332 223344666666666666653322221 124466666666666663 3444
Q ss_pred ccCCCCCCEEEcCCCCCCCCCCC---hHhhcCCCCcCEEEcCCCcCCC-----CCccccCCCCCCEEEcccCcCCCc---
Q 017986 162 IDGLTGLKKLLLDANDLSNDSIS---WVQLAKLKHLTVLSISRNCLNS-----LPGILGHLTALQHLDVSNNKLTTL--- 230 (363)
Q Consensus 162 ~~~l~~L~~L~L~~n~~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~i~~l--- 230 (363)
+..+++|++|++++|.+...... ...+..+++|++|++++|.++. ++..+..+++|++|++++|.++..
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 55667777777777765531110 1112246677777777777664 455566677777777777766522
Q ss_pred --chhh-cCCCCCCEEeccCCcCcc-----CCccccCCCCCcEEECCCCCCCCC-Chhcc----C-CCCCCEEECCCCCC
Q 017986 231 --PTEI-GLLSKLEVLKANNNRISF-----LPESIGNCTSLIEIDLSSNLLSEL-PVTLE----N-LHYLKALHLDNNAL 296 (363)
Q Consensus 231 --~~~~-~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~L~~n~l~~l-~~~~~----~-~~~L~~L~L~~n~l 296 (363)
...+ ...++|+.|++++|.++. ++..+..+++|++|++++|.++.. +..+. . .++|++|++++|.+
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 1122 123577777777777663 234456667888888888877643 22222 1 56788888888887
Q ss_pred CC----CChhhhhCCCCCCEEEccCCccchhhhhc
Q 017986 297 KS----LPTTLFSKCVQLSTLELHNTEITMDALRQ 327 (363)
Q Consensus 297 ~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 327 (363)
+. ..+..+..+++|+.|++++|++++.+...
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~ 417 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 417 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHH
Confidence 73 22344566788888888888888775443
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.9e-19 Score=166.75 Aligned_cols=135 Identities=35% Similarity=0.424 Sum_probs=93.0
Q ss_pred CCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccCcCCCcch-hhcCCCCCCEEeccCCcCccC-CccccCCCCCcEE
Q 017986 190 KLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISFL-PESIGNCTSLIEI 266 (363)
Q Consensus 190 ~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L 266 (363)
++++|+.|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..+ +..+..+++|+.|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 4555555555555555543 345555566666666666655533 355666677777777766655 3456777788888
Q ss_pred ECCCCCCCCCChhc----cCCCCCCEEECCCCCCCCCChhhhhCCCC--CCEEEccCCccchhh
Q 017986 267 DLSSNLLSELPVTL----ENLHYLKALHLDNNALKSLPTTLFSKCVQ--LSTLELHNTEITMDA 324 (363)
Q Consensus 267 ~L~~n~l~~l~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~n~i~~~~ 324 (363)
+|++|.++.+|..+ ..+++|+.|+|++|.|+.++...+..++. ++.|+|++|++.|++
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 88888888776543 56889999999999999999888888887 488999999999875
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=1.7e-20 Score=175.30 Aligned_cols=213 Identities=21% Similarity=0.265 Sum_probs=167.5
Q ss_pred ChHHhhcccceeecccccCccCChhh----hhcCCceeEEEccCCcCcc----cccc-------ccCCCCCCEEEcCCCC
Q 017986 113 TSSERWKATGVIALAEHNLKAIPDEV----WDCSPFIRVLDIRTNSIQC----VPDQ-------IDGLTGLKKLLLDAND 177 (363)
Q Consensus 113 ~~~~~~~~l~~L~l~~n~i~~i~~~~----~~~~~~L~~L~L~~n~i~~----i~~~-------~~~l~~L~~L~L~~n~ 177 (363)
..+..++.|++|++++|.++...... +..+++|++|+|++|.+.. +|.. +..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 46677889999999999988654332 5568899999999976553 2333 3688999999999999
Q ss_pred CCCCCCC--hHhhcCCCCcCEEEcCCCcCCC-----CCccccCC---------CCCCEEEcccCcCC--Ccc---hhhcC
Q 017986 178 LSNDSIS--WVQLAKLKHLTVLSISRNCLNS-----LPGILGHL---------TALQHLDVSNNKLT--TLP---TEIGL 236 (363)
Q Consensus 178 ~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~-----l~~~l~~l---------~~L~~L~l~~n~i~--~l~---~~~~~ 236 (363)
+...... ...+..+++|++|++++|.++. ++..+..+ ++|++|++++|.++ .++ ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 9863221 2357889999999999999873 33334444 89999999999997 334 45678
Q ss_pred CCCCCEEeccCCcCc------cCCccccCCCCCcEEECCCCCC-----CCCChhccCCCCCCEEECCCCCCCCCC----h
Q 017986 237 LSKLEVLKANNNRIS------FLPESIGNCTSLIEIDLSSNLL-----SELPVTLENLHYLKALHLDNNALKSLP----T 301 (363)
Q Consensus 237 ~~~L~~L~l~~n~i~------~~~~~~~~~~~L~~L~L~~n~l-----~~l~~~~~~~~~L~~L~L~~n~l~~~~----~ 301 (363)
+++|+.|++++|.++ .++..+..+++|+.|+|++|.+ ..+|..+..+++|++|+|++|.++... +
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 899999999999998 2333778899999999999999 456778889999999999999998652 2
Q ss_pred hhhh--CCCCCCEEEccCCccchhhh
Q 017986 302 TLFS--KCVQLSTLELHNTEITMDAL 325 (363)
Q Consensus 302 ~~~~--~l~~L~~L~L~~n~i~~~~~ 325 (363)
..+. .+++|+.|+|++|.++..+.
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHH
Confidence 3343 38999999999999998643
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=2.7e-20 Score=172.49 Aligned_cols=207 Identities=21% Similarity=0.254 Sum_probs=161.0
Q ss_pred HHhhcccceeecccccCccCCh----hhhhcCC-ceeEEEccCCcCccc-cccccCC-----CCCCEEEcCCCCCCCCCC
Q 017986 115 SERWKATGVIALAEHNLKAIPD----EVWDCSP-FIRVLDIRTNSIQCV-PDQIDGL-----TGLKKLLLDANDLSNDSI 183 (363)
Q Consensus 115 ~~~~~~l~~L~l~~n~i~~i~~----~~~~~~~-~L~~L~L~~n~i~~i-~~~~~~l-----~~L~~L~L~~n~~~~~~~ 183 (363)
+.....|++|++++|.++.++. ..+..++ +|++|++++|.++.. +..+..+ ++|++|++++|.++....
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3344559999999999999987 7777778 899999999999865 3344443 999999999999885321
Q ss_pred C--hHhhcCC-CCcCEEEcCCCcCCCCCc-----cccC-CCCCCEEEcccCcCC-----CcchhhcCCC-CCCEEeccCC
Q 017986 184 S--WVQLAKL-KHLTVLSISRNCLNSLPG-----ILGH-LTALQHLDVSNNKLT-----TLPTEIGLLS-KLEVLKANNN 248 (363)
Q Consensus 184 ~--~~~~~~l-~~L~~L~l~~n~l~~l~~-----~l~~-l~~L~~L~l~~n~i~-----~l~~~~~~~~-~L~~L~l~~n 248 (363)
. ...+..+ ++|++|++++|.++..+. .+.. .++|++|++++|.++ .++..+..++ +|+.|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 1 0124555 899999999999986652 2334 368999999999988 3444555665 9999999999
Q ss_pred cCccCCc-----cccCC-CCCcEEECCCCCCCC-----CChhccC-CCCCCEEECCCCCCCCCCh----hhhhCCCCCCE
Q 017986 249 RISFLPE-----SIGNC-TSLIEIDLSSNLLSE-----LPVTLEN-LHYLKALHLDNNALKSLPT----TLFSKCVQLST 312 (363)
Q Consensus 249 ~i~~~~~-----~~~~~-~~L~~L~L~~n~l~~-----l~~~~~~-~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~ 312 (363)
.++..+. .+..+ ++|++|++++|.++. ++..+.. .++|++|++++|.++..+. ..+..+++|+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 9985542 34555 599999999999987 5656655 4599999999999998876 34567799999
Q ss_pred EEccCCccc
Q 017986 313 LELHNTEIT 321 (363)
Q Consensus 313 L~L~~n~i~ 321 (363)
|++++|.++
T Consensus 258 L~L~~n~l~ 266 (362)
T 3goz_A 258 VYLDYDIVK 266 (362)
T ss_dssp EEEEHHHHT
T ss_pred EEeccCCcc
Confidence 999999944
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=3.6e-20 Score=169.66 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=172.1
Q ss_pred cceeecccccCccCChhhhhcC--CceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEE
Q 017986 121 TGVIALAEHNLKAIPDEVWDCS--PFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLS 198 (363)
Q Consensus 121 l~~L~l~~n~i~~i~~~~~~~~--~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~ 198 (363)
.+.++++++.+. +..+..+ +.++.|++++|.+...+..+..+++|++|++++|.+....++ ..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEe
Confidence 678999998776 3444444 789999999999997766677899999999999987642122 4578899999999
Q ss_pred cCCCcCC-CCCccccCCCCCCEEEcccC-cCCC--cchhhcCCCCCCEEeccCC-cCcc--CCccccCCC-CCcEEECCC
Q 017986 199 ISRNCLN-SLPGILGHLTALQHLDVSNN-KLTT--LPTEIGLLSKLEVLKANNN-RISF--LPESIGNCT-SLIEIDLSS 270 (363)
Q Consensus 199 l~~n~l~-~l~~~l~~l~~L~~L~l~~n-~i~~--l~~~~~~~~~L~~L~l~~n-~i~~--~~~~~~~~~-~L~~L~L~~ 270 (363)
+++|.++ ..+..+..+++|++|++++| .++. ++..+..+++|++|++++| .++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9999988 45667888999999999999 6773 5666788999999999999 8884 556678889 999999999
Q ss_pred CC--CC--CCChhccCCCCCCEEECCCCC-CCCCChhhhhCCCCCCEEEccCC-ccchhhhhcccCchHHHH
Q 017986 271 NL--LS--ELPVTLENLHYLKALHLDNNA-LKSLPTTLFSKCVQLSTLELHNT-EITMDALRQLEGWDDFDK 336 (363)
Q Consensus 271 n~--l~--~l~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~l~~l~~l~~ 336 (363)
|. ++ .++..+..+++|++|++++|. ++......+..+++|+.|++++| .++...+..+..+++|+.
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 94 54 456677889999999999998 77555556889999999999999 577776666666665554
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=3.3e-19 Score=157.79 Aligned_cols=167 Identities=23% Similarity=0.291 Sum_probs=93.1
Q ss_pred ccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCC
Q 017986 97 RKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDAN 176 (363)
Q Consensus 97 l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n 176 (363)
+..+.+.++.+.++. .+..++.|++|++++|.++.++ .+..+++|++|++++|+++.++. +..+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 344444444444433 4555666666666666666555 23445566666666666665544 555666666666666
Q ss_pred CCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCcc
Q 017986 177 DLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPES 256 (363)
Q Consensus 177 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~ 256 (363)
.+.. ++ .+.. ++|++|++++|.++.++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+ ..
T Consensus 96 ~l~~--l~--~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~ 167 (263)
T 1xeu_A 96 RLKN--LN--GIPS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GG 167 (263)
T ss_dssp CCSC--CT--TCCC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TT
T ss_pred ccCC--cC--cccc-CcccEEEccCCccCCChh-hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HH
Confidence 6554 11 1122 556666666666655543 555666666666666665553 355566666666666666555 34
Q ss_pred ccCCCCCcEEECCCCCCCCC
Q 017986 257 IGNCTSLIEIDLSSNLLSEL 276 (363)
Q Consensus 257 ~~~~~~L~~L~L~~n~l~~l 276 (363)
+..+++|+.|++++|.+...
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 55556666666666655544
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.6e-18 Score=147.84 Aligned_cols=138 Identities=27% Similarity=0.396 Sum_probs=69.9
Q ss_pred hcCCCCcCEEEcCCCcCCCCCc-cccCCCCCCEEEcccCcCCCcchh-hcCCCCCCEEeccCCcCccCCcc-ccCCCCCc
Q 017986 188 LAKLKHLTVLSISRNCLNSLPG-ILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFLPES-IGNCTSLI 264 (363)
Q Consensus 188 ~~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~ 264 (363)
+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++.. +..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 3444444444444444444432 234444555555555554444322 34455555555555555544432 44555566
Q ss_pred EEECCCCCCCCCChh-ccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCch
Q 017986 265 EIDLSSNLLSELPVT-LENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWD 332 (363)
Q Consensus 265 ~L~L~~n~l~~l~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~ 332 (363)
+|++++|.++.++.. +..+++|++|++++|.+. ..++.|+.|+++.|.+++..+..+..++
T Consensus 128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred EEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 666666555555432 455566666666666433 2345566666666666666555554443
No 101
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=2.2e-20 Score=178.43 Aligned_cols=231 Identities=19% Similarity=0.213 Sum_probs=167.0
Q ss_pred cccccccccccccCCC----CChHHhhcccceeecccccCccCCh-----hhhhcCCceeEEEccCCcCcc-----cccc
Q 017986 96 SRKTDRVRDMKMVPVG----KTSSERWKATGVIALAEHNLKAIPD-----EVWDCSPFIRVLDIRTNSIQC-----VPDQ 161 (363)
Q Consensus 96 ~l~~l~~~~~~~~~~~----~~~~~~~~~l~~L~l~~n~i~~i~~-----~~~~~~~~L~~L~L~~n~i~~-----i~~~ 161 (363)
.++.+.+.++.+...+ ...+..++.|++|++++|.++.... .++...++|++|++++|+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 5888888888876544 4455677888899999888864332 222334578999999888874 3455
Q ss_pred ccCCCCCCEEEcCCCCCCCCCCChHhh-----cCCCCcCEEEcCCCcCCC-----CCccccCCCCCCEEEcccCcCCCc-
Q 017986 162 IDGLTGLKKLLLDANDLSNDSISWVQL-----AKLKHLTVLSISRNCLNS-----LPGILGHLTALQHLDVSNNKLTTL- 230 (363)
Q Consensus 162 ~~~l~~L~~L~L~~n~~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~-----l~~~l~~l~~L~~L~l~~n~i~~l- 230 (363)
+..+++|++|++++|.+..... ..+ ...++|++|++++|.++. ++..+..+++|++|++++|.++..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGV--RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHH--HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHH--HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 6678899999999988764211 112 235689999999998875 466677788999999999987642
Q ss_pred ----chhh-cCCCCCCEEeccCCcCcc-----CCccccCCCCCcEEECCCCCCCCC-----Chhc-cCCCCCCEEECCCC
Q 017986 231 ----PTEI-GLLSKLEVLKANNNRISF-----LPESIGNCTSLIEIDLSSNLLSEL-----PVTL-ENLHYLKALHLDNN 294 (363)
Q Consensus 231 ----~~~~-~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~L~~n~l~~l-----~~~~-~~~~~L~~L~L~~n 294 (363)
...+ ..+++|+.|++++|.++. ++..+..+++|++|++++|.+... ...+ ...++|++|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 1222 357899999999998885 566677788999999999988632 2222 12368999999999
Q ss_pred CCCCCC----hhhhhCCCCCCEEEccCCccchhhhhcc
Q 017986 295 ALKSLP----TTLFSKCVQLSTLELHNTEITMDALRQL 328 (363)
Q Consensus 295 ~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~l 328 (363)
.++... +..+..+++|+.|++++|.+++.++..+
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH
Confidence 988653 2445678999999999999988766544
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1e-18 Score=161.09 Aligned_cols=220 Identities=19% Similarity=0.245 Sum_probs=180.3
Q ss_pred cccccccccccccccCCCCChHHhhcccceeecccccC-ccCChhhhhcCCceeE-EEccCCcCccc-cccccCCCCCCE
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNL-KAIPDEVWDCSPFIRV-LDIRTNSIQCV-PDQIDGLTGLKK 170 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i-~~i~~~~~~~~~~L~~-L~L~~n~i~~i-~~~~~~l~~L~~ 170 (363)
...++.|.+.++.+..+....|..++.|++|++++|.+ +.+|.++|..++++++ +.+.+|+++.+ +..|..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 35689999999999999988999999999999999997 5688888988888765 56677999988 556899999999
Q ss_pred EEcCCCCCCCCCCChHhhcCCCCcCEEEcCC-CcCCCCCc-cccCCC-CCCEEEcccCcCCCcchhhcCCCCCCEEeccC
Q 017986 171 LLLDANDLSNDSISWVQLAKLKHLTVLSISR-NCLNSLPG-ILGHLT-ALQHLDVSNNKLTTLPTEIGLLSKLEVLKANN 247 (363)
Q Consensus 171 L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~-~l~~l~-~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~ 247 (363)
|++++|.+.. ++...+....++..+++.+ +.+..++. .+..+. .++.|++++|.++.++.......+|+.+++.+
T Consensus 109 L~l~~n~l~~--~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 109 LLISNTGIKH--LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp EEEEEECCSS--CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred cccccccccc--CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 9999999985 3333455666788888865 57887763 445554 68999999999999988777778999999975
Q ss_pred -CcCccCCc-cccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCC-CCCCCChhhhhCCCCCCEEEccCCc
Q 017986 248 -NRISFLPE-SIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNN-ALKSLPTTLFSKCVQLSTLELHNTE 319 (363)
Q Consensus 248 -n~i~~~~~-~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 319 (363)
|.++.+|. .+..+++|+.|++++|.++.+|.. .+.+|++|.+.++ .++.+|. +..+++|+.+++.++.
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT--LEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC--TTTCCSCCEEECSCHH
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC--chhCcChhhCcCCCCc
Confidence 77889986 578999999999999999999753 4677888876655 6788875 6889999999997543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=9.7e-18 Score=145.19 Aligned_cols=133 Identities=30% Similarity=0.483 Sum_probs=94.6
Q ss_pred CCcCEEEcCCCcCCCC-CccccCCCCCCEEEcccCcCCCcch-hhcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEEC
Q 017986 192 KHLTVLSISRNCLNSL-PGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDL 268 (363)
Q Consensus 192 ~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L 268 (363)
++|++|++++|.++.+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 3444444444444444 2334455555555555555555532 245566666667777766666543 567788888888
Q ss_pred CCCCCCCCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 269 SSNLLSELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 269 ~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
++|.++.+|..+..+++|+.|++++|.++.++...|..+++|+.|++++|+++|++
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 88888888888888899999999999999888888899999999999999999865
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=9e-18 Score=144.49 Aligned_cols=132 Identities=27% Similarity=0.422 Sum_probs=97.2
Q ss_pred CcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEECC
Q 017986 193 HLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDLS 269 (363)
Q Consensus 193 ~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L~ 269 (363)
+|+.|++++|.++.++ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|.. +..+++|++|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 4555555555555544 2455566666666666666655 45566677777777777777766654 5677888888888
Q ss_pred CCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 270 SNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 270 ~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
+|.++.+ +..+..+++|+.|+|++|.++.+++..|..+++|+.|++++|++.|++
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 8888877 556788889999999999999888888888999999999999998865
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=5.2e-18 Score=143.40 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=82.8
Q ss_pred CceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEc
Q 017986 143 PFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDV 222 (363)
Q Consensus 143 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l 222 (363)
++|++|++++|.++.++ .+..+++|++|++++|.+.. + ..+..+++|++|++++|.++..
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~--~~l~~l~~L~~L~l~~n~l~~~--------------- 103 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--Y--NPISGLSNLERLRIMGKDVTSD--------------- 103 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--C--GGGTTCTTCCEEEEECTTCBGG---------------
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--c--hhhhcCCCCCEEEeECCccCcc---------------
Confidence 44666666666666555 45555555555555554432 1 1344455555555555544421
Q ss_pred ccCcCCCcchhhcCCCCCCEEeccCCcCcc-CCccccCCCCCcEEECCCCC-CCCCChhccCCCCCCEEECCCCCCCCCC
Q 017986 223 SNNKLTTLPTEIGLLSKLEVLKANNNRISF-LPESIGNCTSLIEIDLSSNL-LSELPVTLENLHYLKALHLDNNALKSLP 300 (363)
Q Consensus 223 ~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~L~~n~-l~~l~~~~~~~~~L~~L~L~~n~l~~~~ 300 (363)
.+..+..+++|+.|++++|.++. .+..+..+++|++|++++|. ++.++ .+..+++|++|++++|.+++++
T Consensus 104 -------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 104 -------KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp -------GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred -------cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 23334445555555555555542 33345556666666666665 56655 5666677777777777777665
Q ss_pred hhhhhCCCCCCEEEccCCccch
Q 017986 301 TTLFSKCVQLSTLELHNTEITM 322 (363)
Q Consensus 301 ~~~~~~l~~L~~L~L~~n~i~~ 322 (363)
.+..+++|+.|++++|+|++
T Consensus 176 --~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 --GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp --TGGGCSSCCEEEECBC----
T ss_pred --HhccCCCCCEEEeeCcccCC
Confidence 35667777777777777654
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=5.7e-18 Score=143.13 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=113.4
Q ss_pred ChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCC
Q 017986 113 TSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLK 192 (363)
Q Consensus 113 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 192 (363)
.....++.++.|++++|.++.+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.+....+ ..+..++
T Consensus 38 i~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~l~~l~ 112 (197)
T 4ezg_A 38 ITEAQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKI--PNLSGLT 112 (197)
T ss_dssp CBHHHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGS--CCCTTCT
T ss_pred CChhhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccC--hhhcCCC
Confidence 35578899999999999999988 3677899999999999887765 68889999999999999985222 2467788
Q ss_pred CcCEEEcCCCcCCC-CCccccCCCCCCEEEcccCc-CCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCC
Q 017986 193 HLTVLSISRNCLNS-LPGILGHLTALQHLDVSNNK-LTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSS 270 (363)
Q Consensus 193 ~L~~L~l~~n~l~~-l~~~l~~l~~L~~L~l~~n~-i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~ 270 (363)
+|++|++++|.++. .+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeC
Confidence 88888888888774 44556677777777777776 66664 4566666666666666666554 455555666666665
Q ss_pred CCCC
Q 017986 271 NLLS 274 (363)
Q Consensus 271 n~l~ 274 (363)
|++.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 5543
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=4e-18 Score=145.31 Aligned_cols=176 Identities=27% Similarity=0.360 Sum_probs=129.8
Q ss_pred ceeecccccCccCChhhhhcCCceeEEEccCCcCccccc-cccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcC
Q 017986 122 GVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSIS 200 (363)
Q Consensus 122 ~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~ 200 (363)
+.++++++.++.+|... .++|++|++++|.++.++. .+..+++|++|++++|.+.. ++...|..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--cChhhcCCCCCcCEEECC
Confidence 35677777888887654 3468888888888887754 36778888888888888874 443456778888888888
Q ss_pred CCcCCCCCc-cccCCCCCCEEEcccCcCCCcchh-hcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEECCCCCCCCCC
Q 017986 201 RNCLNSLPG-ILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDLSSNLLSELP 277 (363)
Q Consensus 201 ~n~l~~l~~-~l~~l~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L~~n~l~~l~ 277 (363)
+|.++.++. .+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++.. +..+++|++|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 888887764 457788888888888888877544 67788888888888888877654 677888888888888654
Q ss_pred hhccCCCCCCEEECCCCCCCCCChhhhhCCC
Q 017986 278 VTLENLHYLKALHLDNNALKSLPTTLFSKCV 308 (363)
Q Consensus 278 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 308 (363)
+.++.|+.|+++.|.++...+..++.++
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 3456777888888877733333345444
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=5.4e-18 Score=156.93 Aligned_cols=172 Identities=28% Similarity=0.421 Sum_probs=140.0
Q ss_pred ceeecccccCccCChhhhhcCCceeEEEccCCcCcccccc-cc-CCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEc
Q 017986 122 GVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQ-ID-GLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSI 199 (363)
Q Consensus 122 ~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~-~~-~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 199 (363)
+.++++++.++.+|..+. +.++.|+|++|+++.++.. +. .+++|+.|++++|.+.. ++...|.++++|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc--cChhhccCCCCCCEEEC
Confidence 568889999999987653 4588999999999987544 55 88999999999999885 44456888999999999
Q ss_pred CCCcCCCCC-ccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCccCCccc----cCCCCCcEEECCCCCC
Q 017986 200 SRNCLNSLP-GILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLPESI----GNCTSLIEIDLSSNLL 273 (363)
Q Consensus 200 ~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~~~~~~----~~~~~L~~L~L~~n~l 273 (363)
++|.++.++ ..+..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.+|..+ ..+++|+.|+|++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999998876 4578889999999999999877 567888999999999999999888654 5688999999999999
Q ss_pred CCCC-hhccCCCC--CCEEECCCCCCCC
Q 017986 274 SELP-VTLENLHY--LKALHLDNNALKS 298 (363)
Q Consensus 274 ~~l~-~~~~~~~~--L~~L~L~~n~l~~ 298 (363)
+.+| ..+..++. ++.|++++|.+..
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccC
Confidence 9886 34666665 4889999998763
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=2.6e-17 Score=141.62 Aligned_cols=130 Identities=23% Similarity=0.310 Sum_probs=86.2
Q ss_pred CEEEcCCCcCCCCC--ccccCCCCCCEEEcccCcCCCcch-hhcCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCC
Q 017986 195 TVLSISRNCLNSLP--GILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSS 270 (363)
Q Consensus 195 ~~L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~ 270 (363)
++|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|+|++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 34444444444432 224455555555555555554432 45556666666666666665543 366677777777777
Q ss_pred CCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 271 NLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 271 n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
|.++.+ |..+..+++|+.|+|++|.++.+++..|..+++|+.|++++|+++|++
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 777766 556777888888888888888887777888888888888888888765
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=6.5e-17 Score=139.96 Aligned_cols=147 Identities=28% Similarity=0.403 Sum_probs=71.2
Q ss_pred eeecccccCccCChhhhhcCCceeEEEccCCcCccc-cccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCC
Q 017986 123 VIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCV-PDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISR 201 (363)
Q Consensus 123 ~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 201 (363)
.++++++.++.+|..+. ++|++|++++|.++.+ +..|..+++|++|++++|.+.. ++...|..+++|++|++++
T Consensus 23 ~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCS
T ss_pred EeEccCCCcCccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCC
Confidence 35555556666555432 4455666666655544 3345555555555555555542 2223344555555555555
Q ss_pred CcCCCCCc-cccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCCCCCC
Q 017986 202 NCLNSLPG-ILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLLS 274 (363)
Q Consensus 202 n~l~~l~~-~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~n~l~ 274 (363)
|.++.++. .+..+++|++|++++|.++.+|..+..+++|+.|++++|.+..++. .+..+++|+.|++++|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55554432 2344445555555555444444444444444444444444444332 2333444444444444433
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4.8e-17 Score=139.90 Aligned_cols=148 Identities=20% Similarity=0.315 Sum_probs=75.1
Q ss_pred eeecccccCccCChhhhhcCCceeEEEccCCcCcccc--ccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcC
Q 017986 123 VIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP--DQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSIS 200 (363)
Q Consensus 123 ~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~ 200 (363)
.++++++.++.+|..+. +.+++|++++|+++.++ ..|..+++|+.|++++|.++. ++...|.++++|++|+++
T Consensus 15 ~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECCSSCCSSCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECC
T ss_pred EeEeCCCCcccCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--ECHHHhCCCCCCCEEECC
Confidence 56666666666665432 23556666666666542 124455555555555555543 222334455555555555
Q ss_pred CCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccC-CccccCCCCCcEEECCCCCCCCC-Ch
Q 017986 201 RNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFL-PESIGNCTSLIEIDLSSNLLSEL-PV 278 (363)
Q Consensus 201 ~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~L~~n~l~~l-~~ 278 (363)
+|.++.++. ..+..+++|++|++++|.+..+ |..+..+++|++|++++|.++.+ |.
T Consensus 90 ~N~l~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 90 SNRLENVQH----------------------KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp SSCCCCCCG----------------------GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred CCccCccCH----------------------hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 555544432 2234444455555555554433 23344555555555555555544 44
Q ss_pred hccCCCCCCEEECCCCCCC
Q 017986 279 TLENLHYLKALHLDNNALK 297 (363)
Q Consensus 279 ~~~~~~~L~~L~L~~n~l~ 297 (363)
.+..+++|+.|++++|.+.
T Consensus 148 ~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTCTTCCEEECCSCCEE
T ss_pred HhcCCCCCCEEEecCcCCc
Confidence 4555555555555555554
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=4.4e-17 Score=140.13 Aligned_cols=148 Identities=20% Similarity=0.337 Sum_probs=89.8
Q ss_pred ceeecccccCccCChhhhhcCCceeEEEccCCcCccccc-cccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcC
Q 017986 122 GVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSIS 200 (363)
Q Consensus 122 ~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~ 200 (363)
+.++++++.++.+|..+. +++++|++++|+++.++. .|..+++|+.|++++|.+.. +....|.++++|++|+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--LAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--ECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--cCHHHhhCCcCCCEEECC
Confidence 456777777777776543 457777777777776643 46667777777777776663 323456666667777776
Q ss_pred CCcCCCCCc-cccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCCCCCC
Q 017986 201 RNCLNSLPG-ILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLLS 274 (363)
Q Consensus 201 ~n~l~~l~~-~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~n~l~ 274 (363)
+|.++.+|. .+..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.++. .+..+++|++|++++|++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666666653 245566666666666666655 3345555555555555555554443 2444555555555555543
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=2.3e-19 Score=175.30 Aligned_cols=105 Identities=25% Similarity=0.352 Sum_probs=55.3
Q ss_pred CCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCC
Q 017986 217 LQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNAL 296 (363)
Q Consensus 217 L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l 296 (363)
|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..+..+++|+.|+|++|.++.+| .++.+++|+.|+|++|.|
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 4555555555555543 45555555555555555555555555555555555555555554 455555555555555555
Q ss_pred CCCC-hhhhhCCCCCCEEEccCCccchh
Q 017986 297 KSLP-TTLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 297 ~~~~-~~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
+.++ +..+..+++|+.|++++|++++.
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5553 33345555555555555555443
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=3e-16 Score=132.07 Aligned_cols=128 Identities=30% Similarity=0.431 Sum_probs=115.1
Q ss_pred CEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCCCCC
Q 017986 195 TVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLL 273 (363)
Q Consensus 195 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~n~l 273 (363)
+.++++++.++.+|..+ .+++++|++++|.++.+|..+..+++|+.|++++|.++.++. .+..+++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 57889999999988654 358999999999999998889999999999999999998864 588999999999999999
Q ss_pred CCCC-hhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 274 SELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 274 ~~l~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
+.++ ..+..+++|+.|+|++|.++.++..+|..+++|+.|++++|++.|++
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 9885 46889999999999999999999988999999999999999999875
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.3e-16 Score=131.10 Aligned_cols=129 Identities=26% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCcCEEEcCCCcCC--CCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCcc-CCccccCCCCCcEEEC
Q 017986 192 KHLTVLSISRNCLN--SLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISF-LPESIGNCTSLIEIDL 268 (363)
Q Consensus 192 ~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~L 268 (363)
++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+.. +|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34555555555554 4444445555555555555555544 444555555555555555554 3333444556666666
Q ss_pred CCCCCCCCC--hhccCCCCCCEEECCCCCCCCCCh---hhhhCCCCCCEEEccCCccc
Q 017986 269 SSNLLSELP--VTLENLHYLKALHLDNNALKSLPT---TLFSKCVQLSTLELHNTEIT 321 (363)
Q Consensus 269 ~~n~l~~l~--~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~i~ 321 (363)
++|.++.++ ..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666665554 445556666666666666665554 45566666666666666554
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.9e-19 Score=174.64 Aligned_cols=197 Identities=22% Similarity=0.208 Sum_probs=158.1
Q ss_pred HhhcccceeecccccCccCChhhhhcCCceeEEEccCCc-------------Cc-cccccccCCCCCCEEE-cCCCCCCC
Q 017986 116 ERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNS-------------IQ-CVPDQIDGLTGLKKLL-LDANDLSN 180 (363)
Q Consensus 116 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~-------------i~-~i~~~~~~l~~L~~L~-L~~n~~~~ 180 (363)
...+.++.|++++|.++.+|..+. .+++|+.|++++|. .. .+|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 356788899999999999987764 45789999986653 22 3355567778888887 55553321
Q ss_pred CC---CChHhhcC--CCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCc
Q 017986 181 DS---ISWVQLAK--LKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPE 255 (363)
Q Consensus 181 ~~---~~~~~~~~--l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~ 255 (363)
.. +....+.. ...|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence 00 00001111 2358999999999999997 89999999999999999999999999999999999999999998
Q ss_pred cccCCCCCcEEECCCCCCCCC--ChhccCCCCCCEEECCCCCCCCCCh---hhhhCCCCCCEEEc
Q 017986 256 SIGNCTSLIEIDLSSNLLSEL--PVTLENLHYLKALHLDNNALKSLPT---TLFSKCVQLSTLEL 315 (363)
Q Consensus 256 ~~~~~~~L~~L~L~~n~l~~l--~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L 315 (363)
.+..+++|+.|++++|.++.+ |..++.+++|+.|+|++|.++.+++ ..+..+++|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 899999999999999999988 8899999999999999999997764 34566899999975
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=4.7e-16 Score=130.77 Aligned_cols=129 Identities=21% Similarity=0.356 Sum_probs=107.8
Q ss_pred CEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchh--hcCCCCCCEEeccCCcCccC-CccccCCCCCcEEECCCC
Q 017986 195 TVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTE--IGLLSKLEVLKANNNRISFL-PESIGNCTSLIEIDLSSN 271 (363)
Q Consensus 195 ~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~--~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~L~~n 271 (363)
+.++++++.++.+|..+. ..+++|++++|.++.++.. +..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 678888888888886443 3788899999988877643 78888999999999998876 567888899999999999
Q ss_pred CCCCCC-hhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhh
Q 017986 272 LLSELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDAL 325 (363)
Q Consensus 272 ~l~~l~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 325 (363)
.++.++ ..+..+++|++|++++|+++.+++..|..+++|+.|++++|+++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 998774 447888999999999999998877778899999999999999998753
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=5.6e-17 Score=148.15 Aligned_cols=237 Identities=14% Similarity=0.118 Sum_probs=151.1
Q ss_pred cccccccccccccccCCCCChHHh-hcccceeecccccCc--------------------cCChhhhhc--------CCc
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSER-WKATGVIALAEHNLK--------------------AIPDEVWDC--------SPF 144 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~L~l~~n~i~--------------------~i~~~~~~~--------~~~ 144 (363)
...++.+.+.+.- .......+.. ++.|+.|+|++|+|. .||..+|.. +++
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~ 102 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT 102 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence 3345666665421 1111112333 566899999999888 556666666 677
Q ss_pred eeEEEccCCcCcccc-ccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCc----CCCCC-ccccCCCCCC
Q 017986 145 IRVLDIRTNSIQCVP-DQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNC----LNSLP-GILGHLTALQ 218 (363)
Q Consensus 145 L~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~----l~~l~-~~l~~l~~L~ 218 (363)
|++|+|.+ .++.|+ .+|.+|++|+.|++..|.+.. ++..+|.++.++..+....+. ...+. ..+..+..|+
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~--i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN--LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE--ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc--cchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 77777776 666664 346677777777777776652 444556666666655554421 11111 1122222222
Q ss_pred --------------------------EEEcccCcCCCcchhh-cCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCC
Q 017986 219 --------------------------HLDVSNNKLTTLPTEI-GLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSS 270 (363)
Q Consensus 219 --------------------------~L~l~~n~i~~l~~~~-~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~ 270 (363)
.+.+.++-...-...+ ..+++|+.+++++|.++.++. .|.+|.+|+.+++.+
T Consensus 180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence 2222111000000011 237889999999988888875 588888999999988
Q ss_pred CCCCCCC-hhccCCCCCC-EEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHH
Q 017986 271 NLLSELP-VTLENLHYLK-ALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 271 n~l~~l~-~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~ 336 (363)
| +..++ .+|..+++|+ .+++.+ .++.|+..+|.+|++|+.+++++|.++......|.++++|+.
T Consensus 260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 7 77774 5688888998 999988 788888888999999999999999888888888888776654
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.3e-17 Score=165.89 Aligned_cols=190 Identities=23% Similarity=0.207 Sum_probs=74.0
Q ss_pred cccceeecccccCccCChhhhhcCCceeE-----EEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCC
Q 017986 119 KATGVIALAEHNLKAIPDEVWDCSPFIRV-----LDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKH 193 (363)
Q Consensus 119 ~~l~~L~l~~n~i~~i~~~~~~~~~~L~~-----L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 193 (363)
+.++.|.+.++.+..++...+..+ .|+. +++..|++...+..+..+++|+.|+|++|.+.. ++. .+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l-~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~-~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHK-KLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN--ISA-NIFKYDF 248 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSC--CCG-GGGGCCS
T ss_pred CccceEEeeCCCCCcchhhHhhcC-ccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC--CCh-hhcCCCC
Confidence 345666666666666554432221 1111 122222233234445555666666666666552 332 2335566
Q ss_pred cCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCC
Q 017986 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLL 273 (363)
Q Consensus 194 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l 273 (363)
|++|+|++|.++.+|..+..+++|++|++++|.++.+|..++.+++|++|+|++|.++.+|..+..+++|+.|+|++|.+
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 66666666666666655566666666666666666555556666666666666666666655566666666666666665
Q ss_pred CCC-ChhccCCC-CCCEEECCCCCCCCCChhhhhCCCCCCEEEccCC
Q 017986 274 SEL-PVTLENLH-YLKALHLDNNALKSLPTTLFSKCVQLSTLELHNT 318 (363)
Q Consensus 274 ~~l-~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 318 (363)
+.. |..+..+. .+..+++++|.++...+ ..|+.|++++|
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 533 33332211 11124555555543221 34556666665
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=2e-16 Score=144.50 Aligned_cols=219 Identities=16% Similarity=0.202 Sum_probs=169.3
Q ss_pred ccccccccccccccc--------------------CCCCChHHh--------hcccceeecccccCccCChhhhhcCCce
Q 017986 94 ITSRKTDRVRDMKMV--------------------PVGKTSSER--------WKATGVIALAEHNLKAIPDEVWDCSPFI 145 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~--------------------~~~~~~~~~--------~~~l~~L~l~~n~i~~i~~~~~~~~~~L 145 (363)
.+.++.|.+.++.+. .++...|.. +..|+.+.+.+ .++.|+..+|..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 556888888888887 456677888 99999999999 9999999999999999
Q ss_pred eEEEccCCcCcccc-ccccCCCCCCEEEcCCCCC--CCCCCChHhhcCCCCcC-EEEcCCCc---------------CCC
Q 017986 146 RVLDIRTNSIQCVP-DQIDGLTGLKKLLLDANDL--SNDSISWVQLAKLKHLT-VLSISRNC---------------LNS 206 (363)
Q Consensus 146 ~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~~l~~L~-~L~l~~n~---------------l~~ 206 (363)
+++++++|.+..++ ..|.++.++..+.+..+.. ....+...+|.++..|+ .+.+.... +..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 99999999998874 4577777777777665321 11112333466666666 34443211 000
Q ss_pred ------C-----CccccCCCCCCEEEcccCcCCCcch-hhcCCCCCCEEeccCCcCccCCc-cccCCCCCc-EEECCCCC
Q 017986 207 ------L-----PGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISFLPE-SIGNCTSLI-EIDLSSNL 272 (363)
Q Consensus 207 ------l-----~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~-~L~L~~n~ 272 (363)
+ ......+++|+.+++++|.++.++. .|..+.+|+.+++.+| +..++. .|.+|.+|+ .+++.+ .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 0 0001137899999999999999864 5789999999999997 887775 589999999 999988 7
Q ss_pred CCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEc
Q 017986 273 LSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLEL 315 (363)
Q Consensus 273 l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 315 (363)
+..+ +.+|..|++|+.+++++|.++.++..+|.+|++|+.++.
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8877 468999999999999999999999999999999999864
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=2.3e-16 Score=130.74 Aligned_cols=134 Identities=23% Similarity=0.297 Sum_probs=100.2
Q ss_pred hcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccc-cCCCCCcEE
Q 017986 188 LAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESI-GNCTSLIEI 266 (363)
Q Consensus 188 ~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~-~~~~~L~~L 266 (363)
+..+++|+.|++++|.++.++......++|++|++++|.++.+ ..+..+++|+.|++++|.++.+|+.+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4456667777777777666654333333777777777777766 45677777888888888877776543 778888888
Q ss_pred ECCCCCCCCCCh--hccCCCCCCEEECCCCCCCCCChh---hhhCCCCCCEEEccCCccch
Q 017986 267 DLSSNLLSELPV--TLENLHYLKALHLDNNALKSLPTT---LFSKCVQLSTLELHNTEITM 322 (363)
Q Consensus 267 ~L~~n~l~~l~~--~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~i~~ 322 (363)
++++|.++.+|. .+..+++|+.|++++|.++.++.. ++..+++|+.|++++|.+..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888888776 677888899999999988887765 67889999999999988754
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.9e-16 Score=128.97 Aligned_cols=107 Identities=25% Similarity=0.262 Sum_probs=46.2
Q ss_pred CceeEEEccCCcCc--cccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCC-CCccccCCCCCCE
Q 017986 143 PFIRVLDIRTNSIQ--CVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNS-LPGILGHLTALQH 219 (363)
Q Consensus 143 ~~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~ 219 (363)
++|++|++++|.++ .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34555555555554 4444444444455555554444431 123444444444444444443 3333333444444
Q ss_pred EEcccCcCCCcc--hhhcCCCCCCEEeccCCcCccC
Q 017986 220 LDVSNNKLTTLP--TEIGLLSKLEVLKANNNRISFL 253 (363)
Q Consensus 220 L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~i~~~ 253 (363)
|++++|.++.++ ..+..+++|+.|++++|.++.+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 444444444332 2333334444444444444333
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=2.8e-16 Score=126.48 Aligned_cols=125 Identities=28% Similarity=0.394 Sum_probs=89.3
Q ss_pred CCcCEEEcCCCcCC--CCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCcc-CCccccCCCCCcEEEC
Q 017986 192 KHLTVLSISRNCLN--SLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISF-LPESIGNCTSLIEIDL 268 (363)
Q Consensus 192 ~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~L 268 (363)
++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45666777777666 5666566667777777777777666 556667777777777777775 5555556777788888
Q ss_pred CCCCCCCCC--hhccCCCCCCEEECCCCCCCCCCh---hhhhCCCCCCEEEccC
Q 017986 269 SSNLLSELP--VTLENLHYLKALHLDNNALKSLPT---TLFSKCVQLSTLELHN 317 (363)
Q Consensus 269 ~~n~l~~l~--~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~ 317 (363)
++|.++.++ ..+..+++|++|++++|.++.+++ ..+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888777664 567777888888888888887766 5677788888887753
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=6.2e-15 Score=137.93 Aligned_cols=225 Identities=12% Similarity=0.219 Sum_probs=174.4
Q ss_pred cccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCC
Q 017986 96 SRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDA 175 (363)
Q Consensus 96 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~ 175 (363)
.++.+.+.+. +..++..+|... .|+.+.+.+ .++.|+..+|..+++|+.+++.+|+++.++.....+.+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 4566666543 566777778774 688899886 7888999999999999999999999998876655578999999975
Q ss_pred CCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCc--
Q 017986 176 NDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRIS-- 251 (363)
Q Consensus 176 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~-- 251 (363)
+ +. .+...+|.++++|+.+++..+ ++.++ .++.. .+|+.+.+. +.++.+ ..+|..+++|+.+.+.++.+.
T Consensus 213 ~-l~--~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 213 T-LK--EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp T-CC--EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred c-hh--eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 4 44 356678999999999999875 66665 44544 789999984 456666 456788999999999887765
Q ss_pred ---cCC-ccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhh
Q 017986 252 ---FLP-ESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALR 326 (363)
Q Consensus 252 ---~~~-~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 326 (363)
.++ ..|.+|++|+.+++. +.+..+ ..+|..|++|+.+.+..+ ++.|+..+|.+| +|+.+++.+|.+......
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 454 468889999999998 457777 456888999999999554 888888899999 999999999987665555
Q ss_pred cccCch
Q 017986 327 QLEGWD 332 (363)
Q Consensus 327 ~l~~l~ 332 (363)
.+.+++
T Consensus 364 ~F~~~~ 369 (401)
T 4fdw_A 364 VWYGFP 369 (401)
T ss_dssp SCCCSC
T ss_pred cccCCC
Confidence 555553
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1.1e-14 Score=120.59 Aligned_cols=129 Identities=30% Similarity=0.442 Sum_probs=110.5
Q ss_pred cCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcch-hhcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEECCCC
Q 017986 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDLSSN 271 (363)
Q Consensus 194 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L~~n 271 (363)
.+.++++++.++.+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 467888888888887533 3688999999998887754 457889999999999999988754 688999999999999
Q ss_pred CCCCCCh-hccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 272 LLSELPV-TLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 272 ~l~~l~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
.++.++. .+..+++|++|++++|.++.++...|..+++|+.|++++|++++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 9998865 4688999999999999999999988899999999999999999864
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=1.3e-15 Score=153.20 Aligned_cols=185 Identities=21% Similarity=0.253 Sum_probs=120.1
Q ss_pred CceeEEEccCCcCccccccccCCCCCCEEEcC-----CCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCC
Q 017986 143 PFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLD-----ANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTAL 217 (363)
Q Consensus 143 ~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~-----~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L 217 (363)
+.++.|+|.+|.+..++..+.....|+.+.+. .|.+. +....+..++.|+.|+|++|.+..+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~---~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV---MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee---cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 56889999998888765443333333333322 23222 22346788899999999999999998778889999
Q ss_pred CEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccCCCCCCEEECCCCCCC
Q 017986 218 QHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLENLHYLKALHLDNNALK 297 (363)
Q Consensus 218 ~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~~~~L~~L~L~~n~l~ 297 (363)
++|++++|.++.+|..+..+++|+.|+|++|.++.+|..+..+++|++|+|++|.++.+|..++.+++|+.|+|++|.++
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 99999999999899889999999999999999999998899999999999999999999888999999999999999999
Q ss_pred CCChhhhhCCC-CCCEEEccCCccchhhhhcccC
Q 017986 298 SLPTTLFSKCV-QLSTLELHNTEITMDALRQLEG 330 (363)
Q Consensus 298 ~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~l~~ 330 (363)
..++..+..+. .+..+++++|.+++..+..+..
T Consensus 330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~ 363 (727)
T 4b8c_D 330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRF 363 (727)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred CCChHHHhhcchhhhHHhhccCcccCcCccccce
Confidence 77766665432 2234788999998877665543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.7e-15 Score=120.65 Aligned_cols=122 Identities=22% Similarity=0.234 Sum_probs=63.9
Q ss_pred CceeEEEccCCcCc--cccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCC-CCccccCCCCCCE
Q 017986 143 PFIRVLDIRTNSIQ--CVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNS-LPGILGHLTALQH 219 (363)
Q Consensus 143 ~~L~~L~L~~n~i~--~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~l~~l~~L~~ 219 (363)
++|+.|++++|.++ .+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 45666666666665 5555555666666666666665532 234555556666665555554 4444444555555
Q ss_pred EEcccCcCCCcc--hhhcCCCCCCEEeccCCcCccCCc----cccCCCCCcEEEC
Q 017986 220 LDVSNNKLTTLP--TEIGLLSKLEVLKANNNRISFLPE----SIGNCTSLIEIDL 268 (363)
Q Consensus 220 L~l~~n~i~~l~--~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~L 268 (363)
|++++|.++.++ ..+..+++|+.|++++|.++.++. .+..+++|++|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555555432 334444445555555544444432 2344444444443
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=120.84 Aligned_cols=125 Identities=23% Similarity=0.348 Sum_probs=84.9
Q ss_pred ceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCC
Q 017986 122 GVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISR 201 (363)
Q Consensus 122 ~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 201 (363)
+.++++++.++.+|..++ ++|++|++++|+++.+|..|..+++|+.|++++|.++. +....|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE--eCHhHccCCCCCCEEECCC
Confidence 457777777777776543 46777888888777777777777777777777777764 3334567777777777777
Q ss_pred CcCCCCC-ccccCCCCCCEEEcccCcCCCcch-hhcCCCCCCEEeccCCcCc
Q 017986 202 NCLNSLP-GILGHLTALQHLDVSNNKLTTLPT-EIGLLSKLEVLKANNNRIS 251 (363)
Q Consensus 202 n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l~~-~~~~~~~L~~L~l~~n~i~ 251 (363)
|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777664 346666677777777776666644 3455666666666666543
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=1.5e-15 Score=149.47 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=83.7
Q ss_pred cCCceeEEEccCCcCccc-----cccccCCCCCCEEEcCCCCCCCCCCC--hHhhcCCCCcCEEEcCCCcCCCCCccccC
Q 017986 141 CSPFIRVLDIRTNSIQCV-----PDQIDGLTGLKKLLLDANDLSNDSIS--WVQLAKLKHLTVLSISRNCLNSLPGILGH 213 (363)
Q Consensus 141 ~~~~L~~L~L~~n~i~~i-----~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~l~~~l~~ 213 (363)
.+++|++|+|++|.++.. +..+..+++|++|++++|.+...... ...+.++++|+.|++++|.+..++..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 345555555555544321 11223445555555555554421000 01233455555555555555555544555
Q ss_pred CCCCCEEEcccCcCC----CcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCC--ChhccCCCCCC
Q 017986 214 LTALQHLDVSNNKLT----TLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSEL--PVTLENLHYLK 287 (363)
Q Consensus 214 l~~L~~L~l~~n~i~----~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l--~~~~~~~~~L~ 287 (363)
+++|++|+++..... ..+..+..+++|+.+.++++....++..+..+++|++|++++|.++.. +..+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 555555555432111 112233445555555555544444444455556666666666665421 22345566666
Q ss_pred EEECCCCCCCCC-ChhhhhCCCCCCEEEcc
Q 017986 288 ALHLDNNALKSL-PTTLFSKCVQLSTLELH 316 (363)
Q Consensus 288 ~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 316 (363)
+|+++ +.+... ....+..+++|+.|+++
T Consensus 322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp EEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 66666 333311 12333556667777776
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=6.2e-15 Score=122.02 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=6.5
Q ss_pred ceeEEEccCCcCccc
Q 017986 144 FIRVLDIRTNSIQCV 158 (363)
Q Consensus 144 ~L~~L~L~~n~i~~i 158 (363)
+|++|++++|.++.+
T Consensus 20 ~L~~L~l~~n~l~~i 34 (176)
T 1a9n_A 20 RDRELDLRGYKIPVI 34 (176)
T ss_dssp SCEEEECTTSCCCSC
T ss_pred CceEEEeeCCCCchh
Confidence 344444444444433
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=6.1e-14 Score=131.18 Aligned_cols=215 Identities=9% Similarity=0.153 Sum_probs=177.1
Q ss_pred cccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCCCEEEcC
Q 017986 96 SRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGLKKLLLD 174 (363)
Q Consensus 96 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~ 174 (363)
.++.+.+.+ .+..++..+|..+..|+.+++.+|.++.++..+|.. .+|+.+.|..+ +..++ ..|.++++|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~-~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee-cccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 466666665 666788889999999999999999999999999985 79999999854 77774 468899999999998
Q ss_pred CCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCCC-ccccCCCCCCEEEcccCcCC-----Cc-chhhcCCCCCCEEeccC
Q 017986 175 ANDLSNDSISWVQLAKLKHLTVLSISRNCLNSLP-GILGHLTALQHLDVSNNKLT-----TL-PTEIGLLSKLEVLKANN 247 (363)
Q Consensus 175 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~-----~l-~~~~~~~~~L~~L~l~~ 247 (363)
.+ +. .+...+|.+ .+|+.+.+ .+.++.++ .+|..+++|+.+.+.++.+. .+ +..|..+++|+.+.+.
T Consensus 235 ~~-l~--~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~- 308 (401)
T 4fdw_A 235 EN-VS--TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP- 308 (401)
T ss_dssp TT-CC--EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred CC-cc--Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence 75 43 355567887 78999999 45577774 67889999999999988765 45 4568899999999999
Q ss_pred CcCccCCc-cccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCC-CCCEEEccCCccc
Q 017986 248 NRISFLPE-SIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCV-QLSTLELHNTEIT 321 (363)
Q Consensus 248 n~i~~~~~-~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~ 321 (363)
+.+..++. .|.+|.+|+.+.+..+ +..+ ..+|..+ +|+.+++.+|.+..++..+|.+++ +++.|.+..+.+.
T Consensus 309 ~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 309 ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 45887764 6889999999999654 7766 4578888 999999999999999888899885 7889999887643
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=2.9e-14 Score=119.77 Aligned_cols=124 Identities=21% Similarity=0.310 Sum_probs=62.8
Q ss_pred ceeecccccCccCChhhhhcCCceeEEEccCCcCcccccc--ccCCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEc
Q 017986 122 GVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQ--IDGLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSI 199 (363)
Q Consensus 122 ~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~--~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 199 (363)
+.++++++.++.+|..++. ++++|++++|+++.++.. |..+++|++|++++|.++. +....|.++++|++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--IEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--BCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC--cCHhHcCCcccCCEEEC
Confidence 4566666666666654432 466666666666655432 5555556666666555553 22234455555555555
Q ss_pred CCCcCCCCC-ccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcC
Q 017986 200 SRNCLNSLP-GILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRI 250 (363)
Q Consensus 200 ~~n~l~~l~-~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i 250 (363)
++|.++.++ ..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 555555443 2244444555555555544433 33333444444444444433
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=6.1e-15 Score=145.12 Aligned_cols=134 Identities=11% Similarity=0.074 Sum_probs=70.1
Q ss_pred cccccccccccccccCCCCC----hHHhhcccceeecccccCccCCh----hhhhcCCceeEEEccCCcCccccccccCC
Q 017986 94 ITSRKTDRVRDMKMVPVGKT----SSERWKATGVIALAEHNLKAIPD----EVWDCSPFIRVLDIRTNSIQCVPDQIDGL 165 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~----~~~~~~~l~~L~l~~n~i~~i~~----~~~~~~~~L~~L~L~~n~i~~i~~~~~~l 165 (363)
.+.++.|.+.++.+.+.+.. .+..++.|++|++++|.++.+.. ..+..+++|++|++++|.+..++..+..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 45667777777766554432 23455677777777777664432 22345677777777777766666556666
Q ss_pred CCCCEEEcCCCCCCCC-CCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcC
Q 017986 166 TGLKKLLLDANDLSND-SISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKL 227 (363)
Q Consensus 166 ~~L~~L~L~~n~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i 227 (363)
++|++|+++....... ......+..+++|+.++++++....++..+..+++|++|++++|.+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 6677666653211100 0000122333444444444443334444444444555555555543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.1e-16 Score=135.21 Aligned_cols=132 Identities=22% Similarity=0.269 Sum_probs=68.3
Q ss_pred hhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEE
Q 017986 187 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEI 266 (363)
Q Consensus 187 ~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L 266 (363)
.+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+| .+..+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 3444555555555555555544 344455555555555555555444444455555555555555443 34444555555
Q ss_pred ECCCCCCCCCCh--hccCCCCCCEEECCCCCCCCCC----------hhhhhCCCCCCEEEccCCccch
Q 017986 267 DLSSNLLSELPV--TLENLHYLKALHLDNNALKSLP----------TTLFSKCVQLSTLELHNTEITM 322 (363)
Q Consensus 267 ~L~~n~l~~l~~--~~~~~~~L~~L~L~~n~l~~~~----------~~~~~~l~~L~~L~L~~n~i~~ 322 (363)
++++|.+..++. .+..+++|++|++++|.++..+ ..++..+++|+.|| +|+++.
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 555555554432 3455555555555555554321 22355666666654 555554
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.7e-13 Score=112.73 Aligned_cols=106 Identities=30% Similarity=0.422 Sum_probs=84.2
Q ss_pred CCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCC-ccccCCCCCcEEECCCCCCCCCCh-hccCCCCCCEEECCCC
Q 017986 217 LQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLP-ESIGNCTSLIEIDLSSNLLSELPV-TLENLHYLKALHLDNN 294 (363)
Q Consensus 217 L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~L~~n~l~~l~~-~~~~~~~L~~L~L~~n 294 (363)
.+.++++++.++.+|..+ .++++.|++++|.++.++ ..+..+++|++|+|++|.++.++. .+..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456666667666666544 367777777777777663 457788888888888888888764 4678899999999999
Q ss_pred CCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 295 ALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 295 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
+|+.+++..|..+++|+.|+|++|++++.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999998888899999999999999999874
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=4.7e-16 Score=131.39 Aligned_cols=122 Identities=21% Similarity=0.279 Sum_probs=109.3
Q ss_pred cCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCccccCCCCCcEEECCCCCCCCCChhccC
Q 017986 203 CLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPESIGNCTSLIEIDLSSNLLSELPVTLEN 282 (363)
Q Consensus 203 ~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~l~~~~~~ 282 (363)
.++.+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|..+..+++|++|++++|.++.+| .+..
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 45566667889999999999999999988 788999999999999999999887777899999999999999987 6888
Q ss_pred CCCCCEEECCCCCCCCCCh-hhhhCCCCCCEEEccCCccchhhhh
Q 017986 283 LHYLKALHLDNNALKSLPT-TLFSKCVQLSTLELHNTEITMDALR 326 (363)
Q Consensus 283 ~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~ 326 (363)
+++|+.|++++|.++.++. ..+..+++|+.|++++|++++..+.
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 9999999999999998875 5688999999999999999887543
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.48 E-value=3.9e-15 Score=146.52 Aligned_cols=239 Identities=18% Similarity=0.228 Sum_probs=128.3
Q ss_pred cccccccccccccccCCCCChHH-hhcccceeecccc-cCccC-ChhhhhcCCceeEEEccCCcCcc-----ccccccCC
Q 017986 94 ITSRKTDRVRDMKMVPVGKTSSE-RWKATGVIALAEH-NLKAI-PDEVWDCSPFIRVLDIRTNSIQC-----VPDQIDGL 165 (363)
Q Consensus 94 ~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~L~l~~n-~i~~i-~~~~~~~~~~L~~L~L~~n~i~~-----i~~~~~~l 165 (363)
.+.++.+.+.++.+.+.....+. .++.|++|++.+| .++.. ...+...+++|++|++++|.++. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34555666665554433333332 4556666666665 33321 11223345666666666665442 11222345
Q ss_pred CCCCEEEcCCCCCCCCCCChHh----hcCCCCcCEEEcCCC-cCCCCCccccCCCCCCEEEcccCc-------CCCcchh
Q 017986 166 TGLKKLLLDANDLSNDSISWVQ----LAKLKHLTVLSISRN-CLNSLPGILGHLTALQHLDVSNNK-------LTTLPTE 233 (363)
Q Consensus 166 ~~L~~L~L~~n~~~~~~~~~~~----~~~l~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~n~-------i~~l~~~ 233 (363)
++|+.|++++|. . .+.... ...+++|++|++++| .+..++..+..+++|++|+++.+. +..++..
T Consensus 184 ~~L~~L~l~~~~-~--~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 184 TSLVSLNISCLA-S--EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp CCCCEEECTTCC-S--CCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred CcCcEEEecccC-C--cCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 566666666654 1 111111 233566666666665 333444445556666666644432 2233345
Q ss_pred hcCCCCCCEE-eccCCcCccCCccccCCCCCcEEECCCCCCCC--CChhccCCCCCCEEECCCCCCCCCC-hhhhhCCCC
Q 017986 234 IGLLSKLEVL-KANNNRISFLPESIGNCTSLIEIDLSSNLLSE--LPVTLENLHYLKALHLDNNALKSLP-TTLFSKCVQ 309 (363)
Q Consensus 234 ~~~~~~L~~L-~l~~n~i~~~~~~~~~~~~L~~L~L~~n~l~~--l~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~ 309 (363)
+..+++|+.+ .+.+.....++..+..+++|++|++++|.++. +...+..+++|++|++++| ++... ......+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 5666666666 34333333444444567888889988888663 2333567888899988887 44221 233346888
Q ss_pred CCEEEc---------cCCccchhhhhcccC-chHHHH
Q 017986 310 LSTLEL---------HNTEITMDALRQLEG-WDDFDK 336 (363)
Q Consensus 310 L~~L~L---------~~n~i~~~~~~~l~~-l~~l~~ 336 (363)
|+.|++ ..+.+++..+..+.. +++|+.
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 999888 345677766554432 444443
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.48 E-value=1.8e-15 Score=148.83 Aligned_cols=232 Identities=16% Similarity=0.178 Sum_probs=144.8
Q ss_pred ccccccccccccc-ccCCCCCh-HHhhcccceeecccccCccCChhhh----hcCCceeEEEccCCc--Cc--ccccccc
Q 017986 94 ITSRKTDRVRDMK-MVPVGKTS-SERWKATGVIALAEHNLKAIPDEVW----DCSPFIRVLDIRTNS--IQ--CVPDQID 163 (363)
Q Consensus 94 ~~~l~~l~~~~~~-~~~~~~~~-~~~~~~l~~L~l~~n~i~~i~~~~~----~~~~~L~~L~L~~n~--i~--~i~~~~~ 163 (363)
.+.++.+.+.++. +...+... ...++.|++|++++|.++......+ ..+++|++|++++|. +. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 4578888887773 32222222 2367888888888888765443322 245688888888876 22 2222234
Q ss_pred CCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCc-------CCCCCccccCCCCCCEE-EcccCcCCCcchhhc
Q 017986 164 GLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNC-------LNSLPGILGHLTALQHL-DVSNNKLTTLPTEIG 235 (363)
Q Consensus 164 ~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~-------l~~l~~~l~~l~~L~~L-~l~~n~i~~l~~~~~ 235 (363)
.+++|++|++++|.... .+ ...+..+++|+.|+++.+. +..++..+..+++|+.+ .+.+.....++..+.
T Consensus 209 ~~~~L~~L~L~~~~~~~-~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~ 286 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLE-KL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286 (594)
T ss_dssp HCTTCCEEECCTTSCHH-HH-HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred hCCCCcEEecCCCCcHH-HH-HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence 57888888888873221 11 2346678888888866553 22344456778888888 454444444555555
Q ss_pred CCCCCCEEeccCCcCcc--CCccccCCCCCcEEECCCCCCC--CCChhccCCCCCCEEEC---------CCCCCCCCChh
Q 017986 236 LLSKLEVLKANNNRISF--LPESIGNCTSLIEIDLSSNLLS--ELPVTLENLHYLKALHL---------DNNALKSLPTT 302 (363)
Q Consensus 236 ~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~L~~n~l~--~l~~~~~~~~~L~~L~L---------~~n~l~~~~~~ 302 (363)
.+++|+.|++++|.++. +...+..+++|++|++.+| +. .++.....+++|++|++ .++.++.....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 67888888888888652 2223567788888888877 33 12222345788888888 33455533322
Q ss_pred -hhhCCCCCCEEEccCCccchhhhhcc
Q 017986 303 -LFSKCVQLSTLELHNTEITMDALRQL 328 (363)
Q Consensus 303 -~~~~l~~L~~L~L~~n~i~~~~~~~l 328 (363)
...++++|+.|.+..|.+++..+..+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l 392 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITI 392 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence 22357888888888888887765544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=7.9e-13 Score=109.31 Aligned_cols=86 Identities=36% Similarity=0.510 Sum_probs=34.1
Q ss_pred cCCCCcCEEEcCCCcCCCCCc-cccCCCCCCEEEcccCcCCCcchh-hcCCCCCCEEeccCCcCccCCcc-ccCCCCCcE
Q 017986 189 AKLKHLTVLSISRNCLNSLPG-ILGHLTALQHLDVSNNKLTTLPTE-IGLLSKLEVLKANNNRISFLPES-IGNCTSLIE 265 (363)
Q Consensus 189 ~~l~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~i~~l~~~-~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~ 265 (363)
..+++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 334444444444444443332 223344444444444444433221 23334444444444444433322 233444444
Q ss_pred EECCCCCCC
Q 017986 266 IDLSSNLLS 274 (363)
Q Consensus 266 L~L~~n~l~ 274 (363)
|++++|.+.
T Consensus 129 L~l~~N~~~ 137 (177)
T 2o6r_A 129 IWLHTNPWD 137 (177)
T ss_dssp EECCSSCBC
T ss_pred EEecCCCee
Confidence 444444433
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=3.5e-13 Score=111.23 Aligned_cols=105 Identities=27% Similarity=0.407 Sum_probs=81.5
Q ss_pred CEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCC-ccccCCCCCcEEECCCCCCCCCChh-ccCCCCCCEEECCCCC
Q 017986 218 QHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLP-ESIGNCTSLIEIDLSSNLLSELPVT-LENLHYLKALHLDNNA 295 (363)
Q Consensus 218 ~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~L~~n~l~~l~~~-~~~~~~L~~L~L~~n~ 295 (363)
+.++++++.++.+|..+. ++|+.|++++|.+..++ ..+..+++|++|+|++|.++.+|.. +..+++|+.|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665443 56777777777777663 4577788888888888888888654 5788899999999999
Q ss_pred CCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 296 LKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 296 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
|+.+++..|..+++|+.|+|++|++.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99888888888999999999999998764
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=4e-14 Score=131.18 Aligned_cols=180 Identities=18% Similarity=0.185 Sum_probs=109.9
Q ss_pred CceeEEEccCCcCccc-----ccccc-CCCCCCEEEcCCCCCCCCCCChHhhcCCCCcCEEEcCCCcCCCC-----Cccc
Q 017986 143 PFIRVLDIRTNSIQCV-----PDQID-GLTGLKKLLLDANDLSNDSISWVQLAKLKHLTVLSISRNCLNSL-----PGIL 211 (363)
Q Consensus 143 ~~L~~L~L~~n~i~~i-----~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-----~~~l 211 (363)
+.|+.|++++|.++.. ...+. ..++|+.|+|++|.++..... .....+++|+.|++++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLR-TLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHH-HTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHH-HHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4466777777766632 11222 225677777777766531111 1123345677777777777632 1222
Q ss_pred -cCCCCCCEEEcccCcCCC-----cchhhcCCCCCCEEeccCCcCcc-----CCccccCCCCCcEEECCCCCCCC-----
Q 017986 212 -GHLTALQHLDVSNNKLTT-----LPTEIGLLSKLEVLKANNNRISF-----LPESIGNCTSLIEIDLSSNLLSE----- 275 (363)
Q Consensus 212 -~~l~~L~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~L~~n~l~~----- 275 (363)
...+.|++|++++|.++. ++..+...++|++|++++|.++. ++..+..+++|+.|+|++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235678888888887763 34445667788888888888763 23445667788999999888873
Q ss_pred CChhccCCCCCCEEECCCCCCCCCChhhhhCCC-----CCCEEE--ccCCccchh
Q 017986 276 LPVTLENLHYLKALHLDNNALKSLPTTLFSKCV-----QLSTLE--LHNTEITMD 323 (363)
Q Consensus 276 l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~--L~~n~i~~~ 323 (363)
++..+...++|++|+|++|.|+......+..+. .|+.+. +..|.++.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 334456678899999999988866655554432 166666 677777655
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.1e-13 Score=128.20 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=124.8
Q ss_pred CCCCCEEEcCCCCCCCCCCChHhh----c-CCCCcCEEEcCCCcCCCC--CccccCCCCCCEEEcccCcCCCc-----ch
Q 017986 165 LTGLKKLLLDANDLSNDSISWVQL----A-KLKHLTVLSISRNCLNSL--PGILGHLTALQHLDVSNNKLTTL-----PT 232 (363)
Q Consensus 165 l~~L~~L~L~~n~~~~~~~~~~~~----~-~l~~L~~L~l~~n~l~~l--~~~l~~l~~L~~L~l~~n~i~~l-----~~ 232 (363)
+++|+.|++++|.++.. ....+ . ..++|+.|++++|.++.. ......+++|+.|++++|.++.. ..
T Consensus 71 ~~~L~~L~Ls~n~l~~~--~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPV--KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHH--HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHH--HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 57899999999998742 22222 2 236899999999998742 22233456899999999998743 22
Q ss_pred hh-cCCCCCCEEeccCCcCcc-----CCccccCCCCCcEEECCCCCCCC-----CChhccCCCCCCEEECCCCCCCCCCh
Q 017986 233 EI-GLLSKLEVLKANNNRISF-----LPESIGNCTSLIEIDLSSNLLSE-----LPVTLENLHYLKALHLDNNALKSLPT 301 (363)
Q Consensus 233 ~~-~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~L~~n~l~~-----l~~~~~~~~~L~~L~L~~n~l~~~~~ 301 (363)
.+ ...++|+.|++++|.++. ++..+..+++|++|+|++|.++. ++..+...++|++|+|++|.|++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 23 356899999999999874 34456788999999999999884 34566778899999999999996543
Q ss_pred ----hhhhCCCCCCEEEccCCccchhhhhcccCc
Q 017986 302 ----TLFSKCVQLSTLELHNTEITMDALRQLEGW 331 (363)
Q Consensus 302 ----~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l 331 (363)
.++..+++|++|+|++|+|+..+...+..+
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 334567999999999999999887766443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=1.2e-11 Score=101.96 Aligned_cols=106 Identities=29% Similarity=0.390 Sum_probs=82.3
Q ss_pred cCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEECCCC
Q 017986 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDLSSN 271 (363)
Q Consensus 194 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L~~n 271 (363)
-+.+++++|.++.+|..+. ++|++|++++|.++.+ |..+..+++|+.|++++|.++.+|.. +..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3577888888888876443 6788888888888877 55677888888888888888877764 577888888888888
Q ss_pred CCCCCChh-ccCCCCCCEEECCCCCCCCCCh
Q 017986 272 LLSELPVT-LENLHYLKALHLDNNALKSLPT 301 (363)
Q Consensus 272 ~l~~l~~~-~~~~~~L~~L~L~~n~l~~~~~ 301 (363)
.++.+|.. +..+++|+.|+|++|.+...+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88887654 7788888888888888875543
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=1.8e-11 Score=100.47 Aligned_cols=105 Identities=30% Similarity=0.407 Sum_probs=80.4
Q ss_pred cCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCccCCcc-ccCCCCCcEEECCCC
Q 017986 194 LTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLPES-IGNCTSLIEIDLSSN 271 (363)
Q Consensus 194 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~~~~~-~~~~~~L~~L~L~~n 271 (363)
.+.+++++|.++.+|..+ .+.+++|++++|.++.+ |..+..+++|++|++++|.++.++.. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 567788888888877544 36788888888888877 45577788888888888888877654 577888888888888
Q ss_pred CCCCCCh-hccCCCCCCEEECCCCCCCCCC
Q 017986 272 LLSELPV-TLENLHYLKALHLDNNALKSLP 300 (363)
Q Consensus 272 ~l~~l~~-~~~~~~~L~~L~L~~n~l~~~~ 300 (363)
.++.++. .+..+++|+.|+|++|.++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 8887764 4777888888888888877543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=2e-11 Score=111.93 Aligned_cols=96 Identities=20% Similarity=0.181 Sum_probs=44.1
Q ss_pred cCCCcchhhcCCCCCCEEeccC-CcCccCC-ccccCCCCCcEEECCCCCCCCCC-hhccCCCCCCEEECCCCCCCCCChh
Q 017986 226 KLTTLPTEIGLLSKLEVLKANN-NRISFLP-ESIGNCTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTT 302 (363)
Q Consensus 226 ~i~~l~~~~~~~~~L~~L~l~~-n~i~~~~-~~~~~~~~L~~L~L~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~~~~~ 302 (363)
.++.+|. +..+++|+.|+|++ |.+..++ ..+..+++|+.|+|++|.|+.++ ..|..+++|+.|+|++|+|+.+++.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 3334433 44444444444442 4444333 23444444555555555444442 2344455555555555555555544
Q ss_pred hhhCCCCCCEEEccCCccchh
Q 017986 303 LFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 303 ~~~~l~~L~~L~L~~n~i~~~ 323 (363)
.|..++ |+.|+|.+|++.++
T Consensus 99 ~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp TTCSCC-CCEEECCSSCCCCC
T ss_pred HcccCC-ceEEEeeCCCccCC
Confidence 444433 55555555555544
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.17 E-value=7.6e-10 Score=103.28 Aligned_cols=110 Identities=17% Similarity=0.359 Sum_probs=78.6
Q ss_pred ccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCCCCCCCC-ChhccCCCCCCE
Q 017986 211 LGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKA 288 (363)
Q Consensus 211 l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~ 288 (363)
+..+..|+.+.+..+...--...+..+..|+.+.+. +.+..++. .|.+|.+|+.+++..+ ++.+ ..+|..|.+|+.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 445566666666544322123456677788888875 34666654 5788889999998754 6666 457888899999
Q ss_pred EECCCCCCCCCChhhhhCCCCCCEEEccCCccchh
Q 017986 289 LHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMD 323 (363)
Q Consensus 289 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 323 (363)
+.+..+ ++.|+..+|.+|.+|+.+++.++.....
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~ 372 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN 372 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh
Confidence 999654 8889989999999999999998865443
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.15 E-value=6.5e-10 Score=103.72 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=40.9
Q ss_pred ccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHH
Q 017986 257 IGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFD 335 (363)
Q Consensus 257 ~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~ 335 (363)
+..+.+|+.+.+..+ +..+ ..+|..+.+|+.+++..+ ++.|+..+|.+|.+|+.+++..+ ++..+..+|.+|.+|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 444555555555432 4434 234555566666666432 55565556666666666666544 4444444555555554
Q ss_pred H
Q 017986 336 K 336 (363)
Q Consensus 336 ~ 336 (363)
+
T Consensus 370 ~ 370 (394)
T 4fs7_A 370 K 370 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=1.8e-10 Score=105.46 Aligned_cols=102 Identities=25% Similarity=0.286 Sum_probs=60.7
Q ss_pred EEEcCCC-cCCCCCccccCCCCCCEEEccc-CcCCCcc-hhhcCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCCC
Q 017986 196 VLSISRN-CLNSLPGILGHLTALQHLDVSN-NKLTTLP-TEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSN 271 (363)
Q Consensus 196 ~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~-n~i~~l~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~n 271 (363)
.++++++ .++.+|. +..+++|++|++++ |.++.++ ..|..+++|+.|+|++|.++.+++ .|..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455555 5666666 66666666666664 6666554 345666666666666666665543 4566666666666666
Q ss_pred CCCCCChhccCCCCCCEEECCCCCCCC
Q 017986 272 LLSELPVTLENLHYLKALHLDNNALKS 298 (363)
Q Consensus 272 ~l~~l~~~~~~~~~L~~L~L~~n~l~~ 298 (363)
.|+.+|..+.....|+.|+|.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 666665332222226666666666663
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.10 E-value=8.4e-10 Score=102.99 Aligned_cols=100 Identities=17% Similarity=0.324 Sum_probs=72.5
Q ss_pred hhcCCCCCCEEeccCCcCccCC-ccccCCCCCcEEECCCCCCCCCC-hhccCCCCCCEEECCCCCCCCCChhhhhCCCCC
Q 017986 233 EIGLLSKLEVLKANNNRISFLP-ESIGNCTSLIEIDLSSNLLSELP-VTLENLHYLKALHLDNNALKSLPTTLFSKCVQL 310 (363)
Q Consensus 233 ~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~L~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 310 (363)
+|..+..|+.+.+..+. ..++ ..+.++.+|+.+.+. +.+..++ .+|..+.+|+.+.+..+ ++.|...+|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 35566777777776543 2333 356778888888885 4566663 46788899999999764 888888899999999
Q ss_pred CEEEccCCccchhhhhcccCchHHHH
Q 017986 311 STLELHNTEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 311 ~~L~L~~n~i~~~~~~~l~~l~~l~~ 336 (363)
+.+.+..+ ++..+..+|..|.+|+.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 99999654 66666667777777665
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.05 E-value=1.4e-09 Score=101.52 Aligned_cols=202 Identities=15% Similarity=0.250 Sum_probs=135.5
Q ss_pred CCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCCCEEEcCCCCCCC--------
Q 017986 110 VGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGLKKLLLDANDLSN-------- 180 (363)
Q Consensus 110 ~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~~n~~~~-------- 180 (363)
++..+|..+..|+.+.+.++ +..++..+|..+++|+.+.+..+ ++.++ ..|.++..|+.+.+..+...-
T Consensus 153 i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~ 230 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT 230 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred cchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence 45567888888888888754 56788888888888888888765 44443 345666666666554432210
Q ss_pred -----------CCCChHhhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCcchhhcCCCCCCEEeccCCc
Q 017986 181 -----------DSISWVQLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTLPTEIGLLSKLEVLKANNNR 249 (363)
Q Consensus 181 -----------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l~~~~~~~~~L~~L~l~~n~ 249 (363)
..+....|..+..|+.+.+..+...--...+..+..++.+......+. ...+..+.+|+.+.+..+
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-
T ss_pred CCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--cccccccccccccccccc-
Confidence 012223344555555555544422211233455555555555443322 234677889999988754
Q ss_pred CccCCc-cccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCC
Q 017986 250 ISFLPE-SIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNT 318 (363)
Q Consensus 250 i~~~~~-~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 318 (363)
+..+++ ++.+|.+|+.+++.. .+..+ ..+|..|.+|+.+.+..+ ++.|+..+|.+|++|+.+++..+
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 666654 588999999999975 47777 467899999999999876 89999999999999999999765
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=1.4e-08 Score=94.16 Aligned_cols=234 Identities=16% Similarity=0.224 Sum_probs=110.5
Q ss_pred ccccccccccccccCCCCChHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccccccCCCCCCEEEcC
Q 017986 95 TSRKTDRVRDMKMVPVGKTSSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPDQIDGLTGLKKLLLD 174 (363)
Q Consensus 95 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~~~~~l~~L~~L~L~ 174 (363)
..++...+.+ .+..++..+|..+..|+.+.+.+ .++.|+..+|..+ +|+.+.+.. .++.++.......+|+.+.+.
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCC
Confidence 3445555432 34456666777777777777764 3667777777665 466666553 244443332222355555554
Q ss_pred CCCCC------------C-------CCCChHhhcCCCCcCEEEcCCCcCC------------------------------
Q 017986 175 ANDLS------------N-------DSISWVQLAKLKHLTVLSISRNCLN------------------------------ 205 (363)
Q Consensus 175 ~n~~~------------~-------~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------ 205 (363)
.+-.. . ..+....|..+..++.+.+..+...
T Consensus 122 ~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
T 4h09_A 122 GATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTI 201 (379)
T ss_dssp TTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEEC
T ss_pred Cccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccccccccc
Confidence 32110 0 0111123444444444443221100
Q ss_pred -----CC-CccccCCCCCCEEEcccCcCCCc-chhhcCCCCCCEEeccCCcCccCCc-cccCCCCCcEEECCCCCCCCCC
Q 017986 206 -----SL-PGILGHLTALQHLDVSNNKLTTL-PTEIGLLSKLEVLKANNNRISFLPE-SIGNCTSLIEIDLSSNLLSELP 277 (363)
Q Consensus 206 -----~l-~~~l~~l~~L~~L~l~~n~i~~l-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~L~~n~l~~l~ 277 (363)
.+ ...+..+..++.+.+..+ +..+ ...+..+..|+.+.+..+ ++.++. .+.++.+|+.+.+.. .+..++
T Consensus 202 ~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~ 278 (379)
T 4h09_A 202 PSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVP 278 (379)
T ss_dssp CTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEEC
T ss_pred ccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecc
Confidence 00 012233445555555433 2222 233455556666665543 333332 344555555555533 233332
Q ss_pred -hhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHH
Q 017986 278 -VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDK 336 (363)
Q Consensus 278 -~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~ 336 (363)
.+|..+.+|+.+.+.++.++.|+..+|.+|.+|+.+.|..+ ++.-+..+|.+|.+|+.
T Consensus 279 ~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 23455555555555555555555555555555555555432 33333444444444443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=1.9e-09 Score=99.13 Aligned_cols=141 Identities=15% Similarity=0.159 Sum_probs=91.2
Q ss_pred hhcCCCCcCEEEcCCCcCCCCCccccCCCCCCEEEcccCcCCCc-chhh--cCCCCCCEEeccCC--c------CccCCc
Q 017986 187 QLAKLKHLTVLSISRNCLNSLPGILGHLTALQHLDVSNNKLTTL-PTEI--GLLSKLEVLKANNN--R------ISFLPE 255 (363)
Q Consensus 187 ~~~~l~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~i~~l-~~~~--~~~~~L~~L~l~~n--~------i~~~~~ 255 (363)
.+..+|+|+.|++++|.-..++. + .+++|++|++..|.+..- ...+ ..+++|+.|+|+.+ . +..+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 45667888888887763123443 3 267888888887776521 1222 36788888887531 1 212222
Q ss_pred cc--cCCCCCcEEECCCCCCCC-CChhc---cCCCCCCEEECCCCCCCCCChhhh----hCCCCCCEEEccCCccchhhh
Q 017986 256 SI--GNCTSLIEIDLSSNLLSE-LPVTL---ENLHYLKALHLDNNALKSLPTTLF----SKCVQLSTLELHNTEITMDAL 325 (363)
Q Consensus 256 ~~--~~~~~L~~L~L~~n~l~~-l~~~~---~~~~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~i~~~~~ 325 (363)
.+ ..+++|+.|++.+|.+.. .+..+ ..+++|++|+|+.|.+++.....+ ..+++|+.|++++|.|+.+..
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 22 357899999998888763 22222 357889999999998886432222 456899999999999998876
Q ss_pred hccc
Q 017986 326 RQLE 329 (363)
Q Consensus 326 ~~l~ 329 (363)
..+.
T Consensus 325 ~~l~ 328 (362)
T 2ra8_A 325 KELQ 328 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 153
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.90 E-value=3.5e-09 Score=76.72 Aligned_cols=77 Identities=43% Similarity=0.651 Sum_probs=71.5
Q ss_pred CCCcEEEEEEeCCeEEEE-EeCCCCcHHHHHHhhccccCCCCCCeEEE---ecceeecCCcccccccccCCcEEEEeecc
Q 017986 2 GDNEIKITVKFCGRPIPI-TLSPDSTVLRLKNLLLPLTNVLPRGQKLI---FKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 2 ~~~~~~~~v~~~~~~~~i-~~~~~~~~~~l~~~l~~~~~~~~~~~~l~---~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
++.+|+|+|||.++.+.+ ++.++.|+.+||..|++.+|+|+..|++. +.|+.+.|+..++.+.+.++..+.+++..
T Consensus 4 ~~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CCceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 356799999999999999 99999999999999999999999999999 99999999999999999999999998875
Q ss_pred C
Q 017986 78 G 78 (363)
Q Consensus 78 ~ 78 (363)
+
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 4
No 154
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.88 E-value=5.2e-09 Score=76.68 Aligned_cols=76 Identities=28% Similarity=0.509 Sum_probs=70.7
Q ss_pred CCCcEEEEEEeCCeEE-EEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccC
Q 017986 2 GDNEIKITVKFCGRPI-PITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQG 78 (363)
Q Consensus 2 ~~~~~~~~v~~~~~~~-~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~ 78 (363)
++.+|+|+|||.++.+ .+++.++.|+.+||..|++.+|+|+..|++.+.|+.+.|+ .++...+.++..+.+++...
T Consensus 4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 4578999999999999 6999999999999999999999999999999999999998 99999999999999888765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.81 E-value=2e-09 Score=89.41 Aligned_cols=114 Identities=16% Similarity=0.183 Sum_probs=73.3
Q ss_pred ccCCCCCCEEEcccC-cCC-----CcchhhcCCCCCCEEeccCCcCcc-----CCccccCCCCCcEEECCCCCCCC----
Q 017986 211 LGHLTALQHLDVSNN-KLT-----TLPTEIGLLSKLEVLKANNNRISF-----LPESIGNCTSLIEIDLSSNLLSE---- 275 (363)
Q Consensus 211 l~~l~~L~~L~l~~n-~i~-----~l~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~L~~n~l~~---- 275 (363)
+...+.|++|++++| .+. .+...+...++|++|++++|.+.. +...+...++|++|+|++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334445555555555 444 123334445566666666666552 22334555678888888888773
Q ss_pred -CChhccCCCCCCEEEC--CCCCCCCCC----hhhhhCCCCCCEEEccCCccchhh
Q 017986 276 -LPVTLENLHYLKALHL--DNNALKSLP----TTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 276 -l~~~~~~~~~L~~L~L--~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
+...+...++|++|+| ++|.++... ..++...++|+.|++++|.++..+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 3456677788999999 788888533 244566789999999999998765
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=7.5e-09 Score=95.08 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=51.2
Q ss_pred CCCCCCEEeccCCcCcc-CCcc---ccCCCCCcEEECCCCCCCC-----CChhccCCCCCCEEECCCCCCCCCChhhhhC
Q 017986 236 LLSKLEVLKANNNRISF-LPES---IGNCTSLIEIDLSSNLLSE-----LPVTLENLHYLKALHLDNNALKSLPTTLFSK 306 (363)
Q Consensus 236 ~~~~L~~L~l~~n~i~~-~~~~---~~~~~~L~~L~L~~n~l~~-----l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 306 (363)
.+++|+.|++.+|.+.. .+.. ...+++|++|+|+.|.+.. ++..+..+++|+.|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35666666666666542 1111 1245778888888887764 2333456788888888888877554444443
Q ss_pred -CCCCCEEEccCCc
Q 017986 307 -CVQLSTLELHNTE 319 (363)
Q Consensus 307 -l~~L~~L~L~~n~ 319 (363)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 3 3567888776
No 157
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.75 E-value=3.1e-08 Score=70.64 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=67.1
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 3 DNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 3 ~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
.++|+|.|| ..++++.+.+.+++|+.+||..|++..|+|+..|+|.+.|..++|...++...+.++..+.+
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLEL 90 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEE
Confidence 579999999 89999999999999999999999999999999999999999999999999999999988765
No 158
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.73 E-value=2.5e-08 Score=72.91 Aligned_cols=75 Identities=27% Similarity=0.398 Sum_probs=68.4
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccC
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQG 78 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~ 78 (363)
+.+|+|+|||.++.+.+++.++.|+.+||..|++.+++|+..|++.+.++.+ |+..+....+.++..+.+++...
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSSC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEeccc
Confidence 4679999999999999999999999999999999999999999999999998 55589999999999988887653
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=8.9e-09 Score=85.47 Aligned_cols=87 Identities=23% Similarity=0.242 Sum_probs=49.8
Q ss_pred ccCCCCCCEEEcccCcCCC-----cchhhcCCCCCCEEeccCCcCcc-----CCccccCCCCCcEEEC--CCCCCCC---
Q 017986 211 LGHLTALQHLDVSNNKLTT-----LPTEIGLLSKLEVLKANNNRISF-----LPESIGNCTSLIEIDL--SSNLLSE--- 275 (363)
Q Consensus 211 l~~l~~L~~L~l~~n~i~~-----l~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~L--~~n~l~~--- 275 (363)
+...++|++|++++|.+.. +...+...+.|++|++++|.|.. +...+...++|++|+| ++|.++.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 3344455555555555441 22333444556666666666552 2334555667777777 6677762
Q ss_pred --CChhccCCCCCCEEECCCCCCC
Q 017986 276 --LPVTLENLHYLKALHLDNNALK 297 (363)
Q Consensus 276 --l~~~~~~~~~L~~L~L~~n~l~ 297 (363)
+...+...++|++|+|++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 3344556677888888877665
No 160
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.70 E-value=1.9e-08 Score=90.09 Aligned_cols=79 Identities=30% Similarity=0.526 Sum_probs=70.4
Q ss_pred CCCCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEE---ecceeecCCcccccccccCCcEEEEeecc
Q 017986 1 MGDNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLI---FKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 1 ~~~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~---~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
|...+|+|+|||.|+.+++++.++.|+.+||..|++.+|+|+..|++. ++|+.+.|+..++.+.+..|.++.++|+.
T Consensus 1 ~~~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 1 MEVKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp ---CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred CCCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 556789999999999999999999999999999999999999999999 89999999999999999999999999987
Q ss_pred Cc
Q 017986 78 GV 79 (363)
Q Consensus 78 ~~ 79 (363)
+-
T Consensus 81 ~~ 82 (320)
T 3shq_A 81 EA 82 (320)
T ss_dssp C-
T ss_pred hh
Confidence 64
No 161
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.70 E-value=1.2e-07 Score=67.76 Aligned_cols=75 Identities=59% Similarity=0.901 Sum_probs=69.6
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeecc
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
-+++.+.++|.++.+.+++.++.|+.+||..+++.+|+|+..|++.+.|+.+.|+..+....+.++..+.+++.+
T Consensus 10 ~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 10 HSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred CCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 468899999999999999999999999999999999999999999999999999999999999999988877654
No 162
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.69 E-value=9.5e-08 Score=69.48 Aligned_cols=77 Identities=29% Similarity=0.476 Sum_probs=68.8
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCC-----CcHHHHHHhhccccCCCCCCeEEEecceeecCC-cccccccccCCcEEEEee
Q 017986 2 GDNEIKITVKFCGRPIPITLSPD-----STVLRLKNLLLPLTNVLPRGQKLIFKGKVLANE-ETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 2 ~~~~~~~~v~~~~~~~~i~~~~~-----~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~-~~~~~~~~~~~~~l~~~~ 75 (363)
.+++|+|+|||.++.+.+.+.++ .|+.+||..|++.+|+|+..|++.+.|+.+.|+ ..+....+.++..+.+++
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 35789999999999999999985 999999999999999999999999999999984 479999999999988877
Q ss_pred ccC
Q 017986 76 TQG 78 (363)
Q Consensus 76 ~~~ 78 (363)
...
T Consensus 84 ~~~ 86 (92)
T 1wxv_A 84 KKN 86 (92)
T ss_dssp CCS
T ss_pred cCC
Confidence 644
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.67 E-value=1.7e-07 Score=86.65 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=142.4
Q ss_pred hHHhhcccceeecccccCccCChhhhhcCCceeEEEccCCcCccccc-cccCCCCCCEEEcCCCCCCCCCCChHhhcCCC
Q 017986 114 SSERWKATGVIALAEHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTGLKKLLLDANDLSNDSISWVQLAKLK 192 (363)
Q Consensus 114 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 192 (363)
.+.....++.+.+.+ .++.|+..+|..+.+|+.+.|..+ ++.|+. +|.++ +|+.+.+..+ +. .+...+|..+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~--~I~~~aF~~~- 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK--KFGDYVFQGT- 113 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC--EECTTTTTTC-
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee--EeccceeccC-
Confidence 455667888888875 688999999999999999999754 777754 46665 7888877644 33 2444556654
Q ss_pred CcCEEEcCCCcCCCCC-----------------------ccccCCCCCCEEEcccCcCC---------------------
Q 017986 193 HLTVLSISRNCLNSLP-----------------------GILGHLTALQHLDVSNNKLT--------------------- 228 (363)
Q Consensus 193 ~L~~L~l~~n~l~~l~-----------------------~~l~~l~~L~~L~l~~n~i~--------------------- 228 (363)
+|+.+.+..+ +..+. ..+..+..++.+.+..+...
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred CcccccCCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 6888887543 12111 12233344444433322110
Q ss_pred --------------Cc-chhhcCCCCCCEEeccCCcCccCC-ccccCCCCCcEEECCCCCCCCC-ChhccCCCCCCEEEC
Q 017986 229 --------------TL-PTEIGLLSKLEVLKANNNRISFLP-ESIGNCTSLIEIDLSSNLLSEL-PVTLENLHYLKALHL 291 (363)
Q Consensus 229 --------------~l-~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L 291 (363)
.+ ...+..+.+++.+.+..+ +..++ ..+..+..|+.+.+..+ ++.+ ..++..+.+|+.+.+
T Consensus 193 ~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 193 AKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 00 112234445666655443 33333 35678899999999765 6655 456788899999999
Q ss_pred CCCCCCCCChhhhhCCCCCCEEEccCCccchhhhhcccCchHHHHH
Q 017986 292 DNNALKSLPTTLFSKCVQLSTLELHNTEITMDALRQLEGWDDFDKR 337 (363)
Q Consensus 292 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~l~~~ 337 (363)
.. .++.++..+|.+|++|+.+.+.++.++......+..+.+|+.+
T Consensus 271 ~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 271 YA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp CC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred cc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 65 4888888999999999999999998887777778777777653
No 164
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.1e-08 Score=70.76 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=66.4
Q ss_pred cEEEEEE-eCCeEEEEE--eCCCCcHHHHHHhh-ccccCCCCCCeEEEecceeecCCcccccccc-cCCcEEEEeeccCc
Q 017986 5 EIKITVK-FCGRPIPIT--LSPDSTVLRLKNLL-LPLTNVLPRGQKLIFKGKVLANEETLGVAGV-TNGVKLMLIGTQGV 79 (363)
Q Consensus 5 ~~~~~v~-~~~~~~~i~--~~~~~~~~~l~~~l-~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~-~~~~~l~~~~~~~~ 79 (363)
+|+|+|| ..++++.++ +.+..|+.++|..+ ++.+|+|+..|++.+.|+.+.|+..++...+ .++..+.+.+++..
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~ 80 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL 80 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCc
Confidence 4799999 456656665 55999999999999 9999999999999999999999999999999 68899999988765
No 165
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.64 E-value=1.3e-07 Score=66.65 Aligned_cols=72 Identities=26% Similarity=0.284 Sum_probs=66.0
Q ss_pred CCcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 3 DNEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 3 ~~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
+++|++.||. .++.+.+++.+..|+.++|..+++.+|+|+..|++.+.|..+.|...++...+.++..+.+.
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN 74 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 4689999994 78899999999999999999999999999999999999999999999999999999887664
No 166
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.62 E-value=2.5e-07 Score=64.70 Aligned_cols=72 Identities=24% Similarity=0.447 Sum_probs=66.7
Q ss_pred cEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 5 EIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 5 ~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
+|+|+||+.++.+.+.+.++.|+.+||..+++.+|+|+..|++.+.|..+.|+..++...+.++..+.+...
T Consensus 4 ~m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 4 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 388999998889999999999999999999999999999999999999999999999999999998877654
No 167
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.60 E-value=1.4e-07 Score=67.24 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=66.4
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEeccee-ecCCcccccccccCCcEEEEee
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKV-LANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~-~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
+-++++|| +.++.+.+++.++.|+.++|..+++.+|+|+..|++.+.|+. +.|+..++...+.++..+.+..
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEE
Confidence 46899999 899999999999999999999999999999999999999999 9999999999999988876654
No 168
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.59 E-value=2.1e-07 Score=68.05 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=64.2
Q ss_pred CCCcEEEEEE-eCCeEEEE--EeCCCCcHHHHHHhh-ccccCCCCCCeEEEecceeecCCcccccccc-cCCcEEEEeec
Q 017986 2 GDNEIKITVK-FCGRPIPI--TLSPDSTVLRLKNLL-LPLTNVLPRGQKLIFKGKVLANEETLGVAGV-TNGVKLMLIGT 76 (363)
Q Consensus 2 ~~~~~~~~v~-~~~~~~~i--~~~~~~~~~~l~~~l-~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~-~~~~~l~~~~~ 76 (363)
..++|+|+|| ..++.+.+ .+.+..|+.++|..| ++.+|+|+..|++.+.|+.+.|...++...+ .++..+.+..+
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 4578999999 46665555 567999999999999 8888999999999999999999999999999 88888777654
No 169
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.58 E-value=2.5e-07 Score=67.37 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=67.8
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCC-cccccccccCCcEEEEeec
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANE-ETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~-~~~~~~~~~~~~~l~~~~~ 76 (363)
+++|++.||+.+.++.+++.++.|+.+||..|++.+|+|+..|++.+.|+.+.|+ ..+....+.++..+.+...
T Consensus 13 ~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 13 VRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp SCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred CCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence 5789999998777999999999999999999999999999999999999999999 8999999999988776543
No 170
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=2.4e-07 Score=65.54 Aligned_cols=73 Identities=36% Similarity=0.503 Sum_probs=66.2
Q ss_pred CCCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 2 GDNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 2 ~~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
++++|+|+|| +.++.+.+.+.++.|+.+||..+++.+|+|+..|++.+.|..+.|+..++...+.++..+.+.
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 4678999999 678899999999999999999999999999999999999999999989999988888776554
No 171
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.56 E-value=2.8e-07 Score=66.76 Aligned_cols=72 Identities=26% Similarity=0.438 Sum_probs=67.0
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 3 DNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 3 ~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
...|+|+|| +.++.+.+.+.++.|+.+||..|++.+|+|+..|++.+.|+.+.|+..+....+.++..+.++
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEE
Confidence 468999999 788999999999999999999999999999999999999999999999999999999887664
No 172
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=98.55 E-value=2.9e-07 Score=66.24 Aligned_cols=71 Identities=20% Similarity=0.358 Sum_probs=64.2
Q ss_pred CCcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 3 DNEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 3 ~~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
+++|+|+||+ .++.+.+++.+..|+.+||..+++.+|+|+..|++.+.|+.+.|+..+....+ ++..+.++
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEE
Confidence 4679999997 58899999999999999999999999999999999999999999999999998 77776653
No 173
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.53 E-value=3.3e-07 Score=65.94 Aligned_cols=72 Identities=29% Similarity=0.484 Sum_probs=66.9
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 3 DNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 3 ~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
+++|+++|| +.++.+.+.+.++.|+.+||..+++.+++|+..|++.+.|..+.|+..+....+.++..+.+.
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 568999999 688999999999999999999999999999999999999999999999999999998887664
No 174
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=1.2e-07 Score=69.38 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=62.4
Q ss_pred cEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEe-cceeecCCcccccccccCCcEEEEe
Q 017986 5 EIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIF-KGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 5 ~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~-~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
++.+.|+|.++.+++++.++.++.+||..|++.+|+||..|++.+ .++.+.|+..+..+.+..+..+.++
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEEC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEE
Confidence 678899999999999999999999999999999999999999985 4555888889999999998776663
No 175
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.51 E-value=2.4e-07 Score=66.64 Aligned_cols=74 Identities=26% Similarity=0.255 Sum_probs=67.5
Q ss_pred CCcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 3 DNEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 3 ~~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
+++|+|.||+ .++.+.+++.++.|+.+||..+++.+|+|+..|++.+.|..+.|+..++...+.++..+.+...
T Consensus 2 ~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred CccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 4689999996 5789999999999999999999999999999999999999999999999999999998777654
No 176
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.51 E-value=2.8e-07 Score=66.33 Aligned_cols=70 Identities=30% Similarity=0.473 Sum_probs=65.0
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+++|| +.++.+.+++.++.|+.+||..+++.+++|+..|++.+.|..+.|+..+....+.++..+.+.-
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 578999 7889999999999999999999999999999999999999999999999999999999876653
No 177
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.4e-07 Score=69.09 Aligned_cols=74 Identities=28% Similarity=0.487 Sum_probs=66.7
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccC
Q 017986 5 EIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQG 78 (363)
Q Consensus 5 ~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~ 78 (363)
+|+|+|| +.++.+.+.+.++.|+.+||..|++.+|+|+..|++.+.|+.+.|+..+....+.++..+.++....
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 4789999 5889999999999999999999999999999999999999999999999999999999988876643
No 178
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.50 E-value=5.5e-07 Score=66.49 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=67.9
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 2 GDNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 2 ~~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
.+++|+|+||..++.+.+.+.++.|+.+||..|++.+|+|+..|++.+.|+.+.|+..+....+.++..+.+...
T Consensus 22 ~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 22 HPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp -CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred CCCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 356899999977889999999999999999999999999999999999999999999999999999988776553
No 179
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.8e-07 Score=67.73 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=66.1
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 3 DNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 3 ~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
+.+|+|.|| +.++.+.+.+.++.++.+||..|++.+++|+..|++.+.|+.+.|+..+....+.++..+.++-
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 467999999 7888999999999999999999999999999999999999999999999999999998876653
No 180
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.50 E-value=2.1e-07 Score=67.70 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=63.9
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
..+|+|+||+ ++.+.+++.++.|+.+||..+++.+++|+..|++.+.|+.+.|+..+....+.++..+.+.
T Consensus 17 ~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 17 RGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp ---CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEE
T ss_pred CCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEE
Confidence 4578999999 7899999999999999999999999999999999999999999999999999998887664
No 181
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.49 E-value=5e-07 Score=64.48 Aligned_cols=72 Identities=28% Similarity=0.449 Sum_probs=65.7
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
++|+|+|| ..++.+.+.+.++.|+.+||..+++.+++|+..|++.+.+..+.|+..+....+.++..+.+.-
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 68999999 5678999999999999999999999999999999999999999999999999999998877653
No 182
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.48 E-value=2.9e-07 Score=65.79 Aligned_cols=72 Identities=31% Similarity=0.474 Sum_probs=65.1
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
++|+|+|| +.++.+.+.+.++.|+.+||..+++.+++|+..|++.+.+..+.|+..+....+.++..+.+.-
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 57999999 6778999999999999999999999999999999999999999999999999999998877654
No 183
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.48 E-value=4.7e-07 Score=65.46 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=66.0
Q ss_pred CCcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 3 DNEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 3 ~~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
.++|+|+||+ .++.+.+.+.+..|+.+||..|++.+++|+..|++.+.|+.+.|...+....+ ++..+.++..
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 76 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEec
Confidence 4689999996 58899999999999999999999999999999999999999999999999999 7877766554
No 184
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.47 E-value=3e-07 Score=66.91 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=64.5
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
.+|+|+|| ..++++.+++.++.|+.++|..|++.+|+|+..|+|.+.|+.+.|+..++...+.++..+.+
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL 97 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLEL 97 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEE
Confidence 46999999 66899999999999999999999999999999999999999999999999998988887654
No 185
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.46 E-value=5.4e-07 Score=66.41 Aligned_cols=75 Identities=27% Similarity=0.379 Sum_probs=67.5
Q ss_pred CCCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 2 GDNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 2 ~~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
.+.+|+|+||+.+.++.+.+.++.|+.+||..|++.+++|+..|++.+.|+.+.|+..++...+.++..+.+...
T Consensus 19 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred CCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEc
Confidence 467899999976656899999999999999999999999999999999999999999999999999988777654
No 186
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.1e-07 Score=70.17 Aligned_cols=73 Identities=23% Similarity=0.431 Sum_probs=66.3
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 4 NEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 4 ~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
-+|+|+||+.++.+.+.+.++.|+.+||..+++.+|+|+..|++.+.|+.+.|...++...+.++..+.++..
T Consensus 27 m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp --CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 3578999999999999999999999999999999999999999999999999999999999999988877654
No 187
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.44 E-value=9.9e-07 Score=63.25 Aligned_cols=73 Identities=27% Similarity=0.409 Sum_probs=66.8
Q ss_pred CCcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 3 DNEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 3 ~~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
.++|+|+||+ .++.+.+++.++.|+.+||..+++.+++|+..|++.+.+..+.|+..++...+.++..+.+..
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSK 78 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEE
Confidence 4689999996 688999999999999999999999999999999999999999999999999999998876654
No 188
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.41 E-value=1.8e-06 Score=61.53 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=66.6
Q ss_pred CCcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccc---cCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 3 DNEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLPL---TNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 3 ~~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~---~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
..+|+|+||+ .++.+.+++.++.|+.+||..+++. +|+|+..|++.+.|..+.|+..++...+.++..+.+...
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 3579999996 5789999999999999999999986 899999999999999999999999999999998877654
No 189
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.41 E-value=1.3e-06 Score=62.90 Aligned_cols=74 Identities=28% Similarity=0.345 Sum_probs=66.3
Q ss_pred CCCcEEEEEEe-CC-eEEEE-EeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 2 GDNEIKITVKF-CG-RPIPI-TLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 2 ~~~~~~~~v~~-~~-~~~~i-~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
++.+|+|+||+ .+ +.+.+ ++.++.|+.+||..+++.+++|+..|++.+.+..+.|+..+....+.++..+.++-
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 80 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLV 80 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEE
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 45789999996 45 68999 59999999999999999999999999999999999999999999999998877654
No 190
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.40 E-value=1.6e-06 Score=66.53 Aligned_cols=75 Identities=25% Similarity=0.339 Sum_probs=68.3
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeecc
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
+++|+|+||+.++.+.+.+..+.|+.+||..|++.+++++..|++.+.|+.+.|+..+..+.+.++..+.++...
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 468999999778899999999999999999999999999999999999999999999999999999987776543
No 191
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.40 E-value=1.7e-06 Score=63.18 Aligned_cols=72 Identities=25% Similarity=0.378 Sum_probs=65.6
Q ss_pred EEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccc---cCCCCCCeEEEecceeecCCcccccccccCCcEEEEeecc
Q 017986 6 IKITVKF-CGRPIPITLSPDSTVLRLKNLLLPL---TNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 6 ~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~---~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
|+|+||+ .++.+.+++.++.|+.+||..+++. +|+|+..|++.+.|+.+.|+..++...+.++..+.+....
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 5799996 5889999999999999999999988 8999999999999999999999999999999998876653
No 192
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.39 E-value=5.2e-07 Score=66.08 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=66.8
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
.++|+|+||+.++.+.+.+.++.|+.+||..|++.+++|+..|++.+.|..+.|+..+....+.++..+.+..
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVV 87 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCB
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEE
Confidence 4679999998788999999999999999999999999999999999999999999999999999988876643
No 193
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.38 E-value=2.1e-06 Score=64.03 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=68.4
Q ss_pred CCcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeecc
Q 017986 3 DNEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 3 ~~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
..+|+|+||+ .++.+.+.+.+..|+.+||..|++.+|+++..|++.+.|+.+.|...+....+.++..+.++...
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 3469999995 78899999999999999999999999999999999999999999999999999999998876643
No 194
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.38 E-value=9.4e-07 Score=63.50 Aligned_cols=71 Identities=25% Similarity=0.445 Sum_probs=64.8
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 5 EIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 5 ~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
-|++.|| +.++.+.+++.++.|+.+||..+++.+++|+..|++.+.|..+.|+..++...+.++..+.+..
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 3688998 8999999999999999999999999999999999999999999999999999999998876643
No 195
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.38 E-value=1.1e-06 Score=61.67 Aligned_cols=70 Identities=27% Similarity=0.315 Sum_probs=62.9
Q ss_pred cEEEEEEe-CCeEE-EEE-eCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 5 EIKITVKF-CGRPI-PIT-LSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 5 ~~~~~v~~-~~~~~-~i~-~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
+|++.||+ .++.+ .++ +.++.|+.++|..+++.+|+|+..|++.+.|..+.|+..++...+.++..+.+.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLL 74 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 68999995 46664 898 999999999999999999999999999999999999999999999988887664
No 196
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.35 E-value=1.7e-06 Score=63.93 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=66.3
Q ss_pred CCcEEEEEEe--CC---eEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCC-cccccccccCCcEEEEeec
Q 017986 3 DNEIKITVKF--CG---RPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANE-ETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 3 ~~~~~~~v~~--~~---~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~-~~~~~~~~~~~~~l~~~~~ 76 (363)
+++|+|+||. .+ +.+.+++.++.|+.+||..|++.+++++..|++.+.++.+.|+ ..+....+.++..+.+...
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 4579999996 44 7899999999999999999999999999999999999999988 5799999999998887654
Q ss_pred c
Q 017986 77 Q 77 (363)
Q Consensus 77 ~ 77 (363)
.
T Consensus 85 ~ 85 (102)
T 1v5o_A 85 D 85 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 197
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.35 E-value=1.4e-06 Score=60.62 Aligned_cols=70 Identities=30% Similarity=0.453 Sum_probs=63.7
Q ss_pred EEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 6 IKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+++||+ .++.+.+.+.++.|+.+||..+++.+++|+..|++.+.|..+.|+..++...+.++..+.+.-
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 5789995 678899999999999999999999999999999999999999999999999999998876643
No 198
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.34 E-value=2.3e-06 Score=63.77 Aligned_cols=75 Identities=27% Similarity=0.384 Sum_probs=67.5
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeecc
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
+++|+|+||+.+.++.+.+..+.|+.+||..|++.+++++..|++.+.++.+.|+..+....+.++..+.++...
T Consensus 15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECC
T ss_pred CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 567999999766568899999999999999999999999999999999999999999999999999988776543
No 199
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.33 E-value=1.7e-06 Score=65.05 Aligned_cols=72 Identities=28% Similarity=0.432 Sum_probs=66.5
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
.+|+|+|| +.++.+.+.+.+..|+.+||..|.+.+++|+..|++.+.|+.+.|...+....+.++..+.+.-
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 47999999 7889999999999999999999999999999999999999999999999999999998876653
No 200
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.32 E-value=1.7e-06 Score=60.13 Aligned_cols=70 Identities=29% Similarity=0.436 Sum_probs=63.5
Q ss_pred EEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 6 IKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+|+||. .++.+.+.+.++.|+.+||..+++.+++|+..|++.+.|..+.|+..++...+.++..+.+.-
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 5789995 678899999999999999999999999999999999999999999899999999998876643
No 201
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.31 E-value=1.7e-06 Score=63.24 Aligned_cols=71 Identities=28% Similarity=0.451 Sum_probs=65.3
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
|+|+|| ..++.+.+.+.++.|+.+||..+++.+++|+..|++.+.|..+.|+..+....+.++..+.++-.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 789999 56789999999999999999999999999999999999999999999999999999998777543
No 202
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.30 E-value=1.9e-06 Score=62.71 Aligned_cols=73 Identities=21% Similarity=0.128 Sum_probs=63.9
Q ss_pred cEEEEEE-eC----CeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeecc
Q 017986 5 EIKITVK-FC----GRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 5 ~~~~~v~-~~----~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
..+++|+ .. ++++++++.++.|+.+||..|++..|+|+..|+|++.|+.+.|+..++...+.++..+.++-..
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lr 92 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK 92 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence 4456666 33 5689999999999999999999999999999999999999999999999999999998665543
No 203
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.29 E-value=1.8e-06 Score=64.40 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=66.8
Q ss_pred CCCCcEEEEEEeCCe----EEEEEeCC---------CCcHHHHHHhhcccc--CCCCCC-eEEEecceeecCCccccccc
Q 017986 1 MGDNEIKITVKFCGR----PIPITLSP---------DSTVLRLKNLLLPLT--NVLPRG-QKLIFKGKVLANEETLGVAG 64 (363)
Q Consensus 1 ~~~~~~~~~v~~~~~----~~~i~~~~---------~~~~~~l~~~l~~~~--~~~~~~-~~l~~~~~~~~d~~~~~~~~ 64 (363)
|..+.|+|+||+.+. .+.+.+.+ +.|+.+||..+++.+ ++|+.. |++.+.|+.+.|...+....
T Consensus 8 ~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~ 87 (107)
T 1x1m_A 8 MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYG 87 (107)
T ss_dssp CCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHT
T ss_pred ccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcC
Confidence 456789999997655 88888554 599999999999999 999999 99999999999999999999
Q ss_pred ccCCcEEEEeecc
Q 017986 65 VTNGVKLMLIGTQ 77 (363)
Q Consensus 65 ~~~~~~l~~~~~~ 77 (363)
+.++..+.++...
T Consensus 88 i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 88 IQPGSTVHVLRKS 100 (107)
T ss_dssp CCTTCEEEEEESS
T ss_pred CCCCCEEEEEeCC
Confidence 9999988776543
No 204
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.28 E-value=2e-06 Score=62.52 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=63.3
Q ss_pred CCcEEEEEEeCC-e--EEEEEeCCCCcHHHHHHhhcccc--CCCCCCeEEEecceeecCCcccccc--cccCCcEEEEee
Q 017986 3 DNEIKITVKFCG-R--PIPITLSPDSTVLRLKNLLLPLT--NVLPRGQKLIFKGKVLANEETLGVA--GVTNGVKLMLIG 75 (363)
Q Consensus 3 ~~~~~~~v~~~~-~--~~~i~~~~~~~~~~l~~~l~~~~--~~~~~~~~l~~~~~~~~d~~~~~~~--~~~~~~~l~~~~ 75 (363)
.++|+|+||+.. + .+.+++.++.|+.+||..|++.+ ++++..|++.+.|+.+.|+..++.. .+.++..+.++.
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 457999999643 3 57778889999999999999998 9999999999999999999899988 888888877653
No 205
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.27 E-value=4e-06 Score=63.01 Aligned_cols=73 Identities=27% Similarity=0.389 Sum_probs=66.3
Q ss_pred CCcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 3 DNEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 3 ~~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
.++|+|+||+ .++.+.+.+.++.|+.+||..+++.+++++..|++.+.|+.+.|...++...+.++..+.+..
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 3689999995 678999999999999999999999999999999999999999999999999999998876653
No 206
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.26 E-value=3.7e-06 Score=61.68 Aligned_cols=71 Identities=28% Similarity=0.432 Sum_probs=64.9
Q ss_pred EEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 6 IKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 6 ~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
|+|+||+ .++.+.+.+.++.|+.+||..+++.+|+|+..|++.+.|..+.|...++...+.++..+.+...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 5789996 6788999999999999999999999999999999999999999999999999999999777654
No 207
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=3.2e-06 Score=62.72 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=69.0
Q ss_pred CCCCcEEEEEE--eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeecc
Q 017986 1 MGDNEIKITVK--FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 1 ~~~~~~~~~v~--~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ 77 (363)
|.++.|.|+|+ ..+..+.+++.++.++.+||+.+.+..++|++.+++.+.|+.+.|+..+....+.++..+.+.-..
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 45778999988 456799999999999999999999999999999999999999999999999999999997765443
No 208
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.22 E-value=4.2e-06 Score=68.25 Aligned_cols=74 Identities=27% Similarity=0.439 Sum_probs=68.4
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 3 DNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 3 ~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
..+|+|+|| +.++.+.+.+.++.|+.+||..|++.+|+|+..|++.+.|..+.|...+....+.++..+.+...
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 358999999 99999999999999999999999999999999999999999999999999999999999777643
No 209
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=3.5e-06 Score=63.57 Aligned_cols=73 Identities=25% Similarity=0.385 Sum_probs=67.6
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
.++++.|| +.++.+.+++.++.|+.+||..|++.+|+|+..|++.+.|..+.|+..+....+.++..+.+...
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEEC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 47899999 88999999999999999999999999999999999999999999999999999999998777654
No 210
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.21 E-value=3.1e-06 Score=61.94 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=57.6
Q ss_pred CCCcEEEEEEeC-Ce--EEEEEeCCCCcHHHHHHhhcc-ccCCCC-CCeEEEecceeecCCcccccc--cccCCcEEEE
Q 017986 2 GDNEIKITVKFC-GR--PIPITLSPDSTVLRLKNLLLP-LTNVLP-RGQKLIFKGKVLANEETLGVA--GVTNGVKLML 73 (363)
Q Consensus 2 ~~~~~~~~v~~~-~~--~~~i~~~~~~~~~~l~~~l~~-~~~~~~-~~~~l~~~~~~~~d~~~~~~~--~~~~~~~l~~ 73 (363)
+...|+|+||+. ++ .+.+++.+..|+.+||+.|++ .+|.|+ ..|+|.+.|+.+.|+..++.. .+.++..+.+
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 346799999953 44 578888999999999999997 466665 999999999999999898888 7777766544
No 211
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.17 E-value=1.2e-05 Score=60.24 Aligned_cols=72 Identities=22% Similarity=0.268 Sum_probs=63.9
Q ss_pred cEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCccccccccc-------CCcEEEEeec
Q 017986 5 EIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVT-------NGVKLMLIGT 76 (363)
Q Consensus 5 ~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~-------~~~~l~~~~~ 76 (363)
.|.|.||+.+.++.+++.+..|+.++|..|++.+|+|+..|+|.+.|+.+.|...++...+. ....+.+.-.
T Consensus 2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 47788888888899999999999999999999999999999999999999999999999888 5666555443
No 212
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=98.16 E-value=4.1e-06 Score=58.76 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=65.5
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 5 EIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 5 ~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
.|+++|| ..++.+.+.+.++.++.++|+.+.+..|+|+..|++.|.|..+.|...++...+.++..+.+.-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 6999999 6778999999999999999999999999999999999999999999999999999998876643
No 213
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.11 E-value=6.3e-06 Score=61.92 Aligned_cols=73 Identities=25% Similarity=0.168 Sum_probs=65.7
Q ss_pred CCcEEEEEEe----CCeEEEEEeCC-CCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 3 DNEIKITVKF----CGRPIPITLSP-DSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 3 ~~~~~~~v~~----~~~~~~i~~~~-~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
..+|+|+||. .++.+.+.+.+ +.|+.+||..|++.+|+|+..|++.+.|..+.|...+....+.++..+.+.-
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3579999995 57789999998 9999999999999999999999999999999999999999999998876653
No 214
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=98.11 E-value=5.9e-06 Score=60.41 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=66.5
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 3 DNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 3 ~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
+..|+++|| ..++.+.+.+.+..++.++|..+.+..|+|+..|++.|.|..+.|...++...+.++..+.+.-
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 356999999 6788999999999999999999999999999999999999999999999999999998877653
No 215
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.11 E-value=2.2e-05 Score=57.11 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=64.7
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCC-cccccccccCCcEEEEeecc
Q 017986 3 DNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANE-ETLGVAGVTNGVKLMLIGTQ 77 (363)
Q Consensus 3 ~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~-~~~~~~~~~~~~~l~~~~~~ 77 (363)
..+|+|+|| +.++.+.+.+.++.++.+||..|++.+ +..|+|.+.|+.+.|+ ..+....+.++..+.++...
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 468999999 568899999999999999999999887 8999999999999999 89999999999998876653
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=5.1e-07 Score=78.91 Aligned_cols=61 Identities=28% Similarity=0.330 Sum_probs=24.7
Q ss_pred CCCCcEEECCCCCCCCCC---hhccCCCCCCEEECCCCCCCCCCh-hhhhCCCCCCEEEccCCccc
Q 017986 260 CTSLIEIDLSSNLLSELP---VTLENLHYLKALHLDNNALKSLPT-TLFSKCVQLSTLELHNTEIT 321 (363)
Q Consensus 260 ~~~L~~L~L~~n~l~~l~---~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~ 321 (363)
+++|+.|+|++|.++.++ ..+..+++|+.|+|++|.|+++.. ..+..+ +|++|+|++|+++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 334444444444444322 223344444444444444444311 111222 4445555555444
No 217
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.07 E-value=1.3e-05 Score=64.42 Aligned_cols=73 Identities=26% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 3 DNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 3 ~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
...|+++|| ..++.+.+++.+..|+.++|..+++.+|+|+..|++.+.|..+.|...+....+.++..+.+..
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 457999999 5678999999999999999999999999999999999999999999999999999999877754
No 218
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.06 E-value=8.1e-06 Score=65.65 Aligned_cols=71 Identities=25% Similarity=0.366 Sum_probs=66.9
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEE-e-cceeecCCcccccccccCCcEEEEeec
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLI-F-KGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~-~-~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
|+++|| +.++.+.+++.+..|+.++|..+++.+|+|+..|++. + .|..+.|...++...+.++..+.+...
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 789999 8999999999999999999999999999999999999 8 799999999999999999999888765
No 219
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.06 E-value=1e-05 Score=66.37 Aligned_cols=72 Identities=28% Similarity=0.409 Sum_probs=66.5
Q ss_pred cEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 5 EIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 5 ~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
.|+|.|| ..++++.+++.+..|+.+||..|++.+++|+..|++.+.|..+.|...++...+.++..+.+...
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 5899999 56789999999999999999999999999999999999999999999999999999999877643
No 220
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.06 E-value=1.8e-05 Score=59.82 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=65.2
Q ss_pred CCcEEEEEEeC-----------CeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEE
Q 017986 3 DNEIKITVKFC-----------GRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKL 71 (363)
Q Consensus 3 ~~~~~~~v~~~-----------~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l 71 (363)
...|+|+|+.. ++.+.+.+.+..|+.+||..|++.+|+|+..|++.+.|..+.|...+....+.++..+
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 45899999953 5689999999999999999999999999999999999999999999999999999887
Q ss_pred EEee
Q 017986 72 MLIG 75 (363)
Q Consensus 72 ~~~~ 75 (363)
.++-
T Consensus 103 ~lv~ 106 (115)
T 1we7_A 103 HLAL 106 (115)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
No 221
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=2.5e-06 Score=69.39 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=56.0
Q ss_pred CCCEEeccCCcCccCC-ccccCCCCCcEEECCCCC-CCCC-ChhccC----CCCCCEEECCCC-CCCCCChhhhhCCCCC
Q 017986 239 KLEVLKANNNRISFLP-ESIGNCTSLIEIDLSSNL-LSEL-PVTLEN----LHYLKALHLDNN-ALKSLPTTLFSKCVQL 310 (363)
Q Consensus 239 ~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~L~~n~-l~~l-~~~~~~----~~~L~~L~L~~n-~l~~~~~~~~~~l~~L 310 (363)
.|+.|++++|.++... ..+..+++|++|+|++|. +++- -..+.. +++|++|+|++| +|++-....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 5666666666655322 235667777888887774 5532 123333 246888888887 4876655667788888
Q ss_pred CEEEccCCc-cchhh
Q 017986 311 STLELHNTE-ITMDA 324 (363)
Q Consensus 311 ~~L~L~~n~-i~~~~ 324 (363)
+.|++++++ |+..+
T Consensus 142 ~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 142 KYLFLSDLPGVKEKE 156 (176)
T ss_dssp CEEEEESCTTCCCHH
T ss_pred CEEECCCCCCCCchH
Confidence 888888875 66643
No 222
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.04 E-value=1.3e-05 Score=64.91 Aligned_cols=71 Identities=27% Similarity=0.418 Sum_probs=65.2
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
|+++|| ..++.+.+++.+..|+.++|..+++.+|+|+..|++.+.|+.+.|...+....+.++..+.+...
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 578999 57789999999999999999999999999999999999999999999999999999999777543
No 223
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.03 E-value=2.1e-05 Score=57.05 Aligned_cols=73 Identities=25% Similarity=0.291 Sum_probs=62.1
Q ss_pred CCcEEEEEEeCC---eEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecc--e---ee-cCCcccccccccCCcEEEE
Q 017986 3 DNEIKITVKFCG---RPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKG--K---VL-ANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 3 ~~~~~~~v~~~~---~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~--~---~~-~d~~~~~~~~~~~~~~l~~ 73 (363)
++.|+|.|+... +.+.+.+.+..|+.+||..|++.+|+|+..|+|.+.+ + .+ .|...+....+.++..+.+
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 567899999543 3899999999999999999999999999999999984 3 34 7778899999999988876
Q ss_pred ee
Q 017986 74 IG 75 (363)
Q Consensus 74 ~~ 75 (363)
+.
T Consensus 93 vD 94 (95)
T 2kjr_A 93 VD 94 (95)
T ss_dssp EE
T ss_pred EC
Confidence 54
No 224
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.02 E-value=1.9e-05 Score=57.40 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=63.8
Q ss_pred CcEEEEEEeCCe--EEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecc---ee----ecCCcccccccccCCcEEEEe
Q 017986 4 NEIKITVKFCGR--PIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKG---KV----LANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 4 ~~~~~~v~~~~~--~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~---~~----~~d~~~~~~~~~~~~~~l~~~ 74 (363)
+.|+|+|++... .+.+.+.+..|+.+||..|++.+|+|+..|+|.+.+ .. ..|...+....+.++..+.+.
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 468999998777 799999999999999999999999999999999986 32 467788999999999988886
Q ss_pred ecc
Q 017986 75 GTQ 77 (363)
Q Consensus 75 ~~~ 77 (363)
...
T Consensus 86 d~~ 88 (95)
T 1v6e_A 86 DHS 88 (95)
T ss_dssp CCS
T ss_pred ECC
Confidence 643
No 225
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.02 E-value=1.5e-05 Score=59.40 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=62.4
Q ss_pred EEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccC-------CcEEEEee
Q 017986 6 IKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTN-------GVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~-------~~~l~~~~ 75 (363)
+=+.||..+.++.+++.+..|+.++|..|++..|+|+..|+|++.|+.+.|...++...+.. ...+.+.-
T Consensus 3 vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred eEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 34667788889999999999999999999999999999999999999999999999999888 77766543
No 226
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=97.27 E-value=7.2e-07 Score=62.17 Aligned_cols=68 Identities=22% Similarity=0.400 Sum_probs=60.3
Q ss_pred EEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 6 IKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 6 ~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
|++.||+ .++.+.+++.++.|+.++|..+++.+|+|+..|++.+.|..+.|+..++...+.++..+.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 5789995 6778899999999999999999999999999999999999999988888888887776544
No 227
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.01 E-value=1.9e-05 Score=57.43 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=63.8
Q ss_pred CCCcEEEEEEeCC---eEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecce---e----ecCCcccccccccCCcEE
Q 017986 2 GDNEIKITVKFCG---RPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGK---V----LANEETLGVAGVTNGVKL 71 (363)
Q Consensus 2 ~~~~~~~~v~~~~---~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~---~----~~d~~~~~~~~~~~~~~l 71 (363)
+++.++|.|+... ..+.+.+.+..|+.+||..|+..+|+|+..|+|.+.++ . ..|...+....+.++..+
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 5678899999533 37999999999999999999999999999999999873 2 366777889999999998
Q ss_pred EEeec
Q 017986 72 MLIGT 76 (363)
Q Consensus 72 ~~~~~ 76 (363)
.++..
T Consensus 91 hlvd~ 95 (97)
T 2kj6_A 91 HIIDL 95 (97)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 87764
No 228
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.97 E-value=9.3e-06 Score=70.89 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=73.1
Q ss_pred hHHhhcccce--eecccccCccCCh---hhhhcCCceeEEEccCCcCcccc---ccccCCCCCCEEEcCCCCCCCCCCCh
Q 017986 114 SSERWKATGV--IALAEHNLKAIPD---EVWDCSPFIRVLDIRTNSIQCVP---DQIDGLTGLKKLLLDANDLSNDSISW 185 (363)
Q Consensus 114 ~~~~~~~l~~--L~l~~n~i~~i~~---~~~~~~~~L~~L~L~~n~i~~i~---~~~~~l~~L~~L~L~~n~~~~~~~~~ 185 (363)
.+...+.|.. ++++.|....++. .+...+++|+.|+|++|+++.++ ..+..+++|+.|+|++|.+... -..
T Consensus 136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l 214 (267)
T 3rw6_A 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL 214 (267)
T ss_dssp TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG
T ss_pred HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh
Confidence 3445555554 6677775544432 23355788999999999998654 4456899999999999999853 111
Q ss_pred HhhcCCCCcCEEEcCCCcCCC-CC-------ccccCCCCCCEEEc
Q 017986 186 VQLAKLKHLTVLSISRNCLNS-LP-------GILGHLTALQHLDV 222 (363)
Q Consensus 186 ~~~~~l~~L~~L~l~~n~l~~-l~-------~~l~~l~~L~~L~l 222 (363)
..+..+ +|+.|++++|.+.. +| ..+..+++|+.||-
T Consensus 215 ~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 215 DKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 233334 89999999999873 33 23567888888753
No 229
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=97.94 E-value=5.2e-05 Score=55.58 Aligned_cols=71 Identities=27% Similarity=0.301 Sum_probs=60.6
Q ss_pred cEEEEEE-eC--CeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccc-cCCcEEEEee
Q 017986 5 EIKITVK-FC--GRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGV-TNGVKLMLIG 75 (363)
Q Consensus 5 ~~~~~v~-~~--~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~-~~~~~l~~~~ 75 (363)
.++|+|+ .. +.++.+++.+..|+.++|+.+.+..|+|+..|++.+.++...|+..+....+ .+|..+.++-
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEE
Confidence 4567777 33 3699999999999999999999999999999999999998889999999998 4888865543
No 230
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.92 E-value=1.9e-05 Score=58.16 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=65.0
Q ss_pred CCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCC---------------CCeEEEecceeec-CCcccccccc
Q 017986 3 DNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLP---------------RGQKLIFKGKVLA-NEETLGVAGV 65 (363)
Q Consensus 3 ~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~---------------~~~~l~~~~~~~~-d~~~~~~~~~ 65 (363)
...|+++|| ..+++++|++.++.|+.+||..|++..++++ ..++|.+.|..+. |...++...+
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 456999998 8889999999999999999999999988877 3569999999997 4588999999
Q ss_pred cCCcEEEEeecc
Q 017986 66 TNGVKLMLIGTQ 77 (363)
Q Consensus 66 ~~~~~l~~~~~~ 77 (363)
.++..+.++-.-
T Consensus 85 ~~g~~l~lv~~l 96 (105)
T 1v2y_A 85 RNRDEVSFIKKL 96 (105)
T ss_dssp CSSEEEEEEECS
T ss_pred CCCCEEEEEehh
Confidence 999997776543
No 231
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.92 E-value=1.9e-05 Score=61.07 Aligned_cols=59 Identities=25% Similarity=0.288 Sum_probs=49.3
Q ss_pred cEEECCCCCCC--CCChhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccCCccchhh
Q 017986 264 IEIDLSSNLLS--ELPVTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHNTEITMDA 324 (363)
Q Consensus 264 ~~L~L~~n~l~--~l~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 324 (363)
..++.+++.++ .+|..+. ++|++|+|++|+|+.++..+|..+++|+.|+|++|++.+++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 46778888887 7875432 46899999999999999999999999999999999998875
No 232
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=97.91 E-value=2.7e-05 Score=61.97 Aligned_cols=71 Identities=28% Similarity=0.451 Sum_probs=65.4
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
|+|+|| +.++.+.+.+.++.|+.++|..+++.+|+|+..|++.+.|..+.|...++...+.++..+.+...
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEee
Confidence 578999 57889999999999999999999999999999999999999999999999999999999887664
No 233
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=97.87 E-value=5.9e-05 Score=57.43 Aligned_cols=67 Identities=19% Similarity=0.351 Sum_probs=59.6
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhcc------ccCC--CCCCeEEEecceeecCCcccccccccCCcE
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLP------LTNV--LPRGQKLIFKGKVLANEETLGVAGVTNGVK 70 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~------~~~~--~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~ 70 (363)
..|.|+|| ..++++++.+.+.+|+.++|+.|.+ .+++ ++..|+|++.|+.+.|+..++...+..+..
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~ 91 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT 91 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc
Confidence 35999999 7789999999999999999999998 6777 489999999999999999999998886653
No 234
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=97.84 E-value=4.5e-05 Score=67.28 Aligned_cols=72 Identities=28% Similarity=0.450 Sum_probs=66.0
Q ss_pred CCcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 3 DNEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 3 ~~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
..+|+|+||+ .++.+.+++.++.|+.+||..|++.+++|+..|+|.+.|+.+.|+..++...+.++..+.++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEE
Confidence 4689999996 67899999999999999999999999999999999999999999999999999998887664
No 235
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=1.4e-06 Score=70.89 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=63.8
Q ss_pred CCCCcEEECCCCCCCCC-ChhccCCCCCCEEECCCC-CCCCCChhhhhCC----CCCCEEEccCCc-cchhhhhcccCch
Q 017986 260 CTSLIEIDLSSNLLSEL-PVTLENLHYLKALHLDNN-ALKSLPTTLFSKC----VQLSTLELHNTE-ITMDALRQLEGWD 332 (363)
Q Consensus 260 ~~~L~~L~L~~n~l~~l-~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l----~~L~~L~L~~n~-i~~~~~~~l~~l~ 332 (363)
--.|+.||+++|.+++. ...+..+++|++|+|++| .|++.....++.+ ++|+.|+|++|. ||+.++..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34799999999998854 345678999999999999 5886665556653 589999999985 9999999988888
Q ss_pred HHHHHH
Q 017986 333 DFDKRR 338 (363)
Q Consensus 333 ~l~~~~ 338 (363)
+|+.+.
T Consensus 140 ~L~~L~ 145 (176)
T 3e4g_A 140 NLKYLF 145 (176)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 877643
No 236
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=97.84 E-value=2.3e-06 Score=66.12 Aligned_cols=70 Identities=27% Similarity=0.424 Sum_probs=0.0
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+|+|| ..++.+.+++.++.|+.+||..|++.+|+|+..|++.+.|..+.|+..++...+.++..+.++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEE
Confidence 578999 4678999999999999999999999999999999999999999999999999988888766543
No 237
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=97.83 E-value=8.7e-05 Score=52.65 Aligned_cols=72 Identities=15% Similarity=0.164 Sum_probs=61.9
Q ss_pred cEEEEEEe---CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEe-------cceeecCCcccccccccCCcEEEEe
Q 017986 5 EIKITVKF---CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIF-------KGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 5 ~~~~~v~~---~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~-------~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
.++|.|.. +.+...+.+.+..|+.+||..|+..+|+|+..|+|.+ .+..+.|...+....+.++..+.++
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 45666663 4457889999999999999999999999999999996 4778889999999999999998887
Q ss_pred ec
Q 017986 75 GT 76 (363)
Q Consensus 75 ~~ 76 (363)
..
T Consensus 82 d~ 83 (86)
T 4b6w_A 82 DL 83 (86)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 238
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.83 E-value=0.00013 Score=55.25 Aligned_cols=67 Identities=28% Similarity=0.283 Sum_probs=59.1
Q ss_pred CCCcEEEEEE-eCCeEE-EEEeCCCCcHHHHHHhh-----ccccCCCC--CCeEEEecceeecCCcccccccccCC
Q 017986 2 GDNEIKITVK-FCGRPI-PITLSPDSTVLRLKNLL-----LPLTNVLP--RGQKLIFKGKVLANEETLGVAGVTNG 68 (363)
Q Consensus 2 ~~~~~~~~v~-~~~~~~-~i~~~~~~~~~~l~~~l-----~~~~~~~~--~~~~l~~~~~~~~d~~~~~~~~~~~~ 68 (363)
|...++++|| ..++.+ ++++.+.+|+.++|..| ++-.++|+ ..|+|++.|+.+.|...++...+..+
T Consensus 13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~ 88 (126)
T 1se9_A 13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVS 88 (126)
T ss_dssp SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTT
T ss_pred hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcC
Confidence 3457899999 777677 89999999999999999 56778887 79999999999999999999999877
No 239
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=97.82 E-value=6.4e-05 Score=57.33 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=64.9
Q ss_pred CCcEEEEEEeCCe--EEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecc---e---e-ecCCcccccccccCCcEEEE
Q 017986 3 DNEIKITVKFCGR--PIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKG---K---V-LANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 3 ~~~~~~~v~~~~~--~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~---~---~-~~d~~~~~~~~~~~~~~l~~ 73 (363)
++.|+|+|+.... ...+.+.+..|+.+||..|+..+|+|+..|+|.+.+ . . ..|...+....+.++..+.+
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 4579999997766 788999999999999999999999999999999987 2 2 36777899999999999888
Q ss_pred eeccC
Q 017986 74 IGTQG 78 (363)
Q Consensus 74 ~~~~~ 78 (363)
.....
T Consensus 84 vd~~p 88 (122)
T 1t0y_A 84 VDVTG 88 (122)
T ss_dssp EECTT
T ss_pred EeCCC
Confidence 77543
No 240
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.80 E-value=3.8e-05 Score=63.57 Aligned_cols=111 Identities=19% Similarity=0.182 Sum_probs=67.8
Q ss_pred cCCCCCCEEEcccC-cCC-----CcchhhcCCCCCCEEeccCCcCc-----cCCccccCCCCCcEEECCCCCCC-----C
Q 017986 212 GHLTALQHLDVSNN-KLT-----TLPTEIGLLSKLEVLKANNNRIS-----FLPESIGNCTSLIEIDLSSNLLS-----E 275 (363)
Q Consensus 212 ~~l~~L~~L~l~~n-~i~-----~l~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~~~L~~L~L~~n~l~-----~ 275 (363)
..-+.|++|+++++ .+. .+...+..-+.|+.|+|++|.+. .+.+.+..-+.|+.|+|++|.|+ .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33455666666653 444 23344555566777777777665 22233445567788888888777 2
Q ss_pred CChhccCCCCCCEEECCCCC---CCCCC----hhhhhCCCCCCEEEccCCccch
Q 017986 276 LPVTLENLHYLKALHLDNNA---LKSLP----TTLFSKCVQLSTLELHNTEITM 322 (363)
Q Consensus 276 l~~~~~~~~~L~~L~L~~n~---l~~~~----~~~~~~l~~L~~L~L~~n~i~~ 322 (363)
+..++..-..|++|+|++|. +..-. ..++...+.|+.|+++.|.+..
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 34455666678888887653 33211 2345667899999998887654
No 241
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.80 E-value=0.00014 Score=54.47 Aligned_cols=66 Identities=20% Similarity=0.356 Sum_probs=58.4
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhcc------ccCC--CCCCeEEEecceeecCCcccccccccCCc
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLP------LTNV--LPRGQKLIFKGKVLANEETLGVAGVTNGV 69 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~------~~~~--~~~~~~l~~~~~~~~d~~~~~~~~~~~~~ 69 (363)
..|.|+|| ..++++++.+.+..|+.++|..|.+ .+++ ++..|+|++.|+.+.|+..++...+..+.
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~ 89 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK 89 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC
Confidence 46999999 6889999999999999999999997 5564 69999999999999999999988876553
No 242
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=97.79 E-value=7.9e-05 Score=59.18 Aligned_cols=72 Identities=28% Similarity=0.444 Sum_probs=65.6
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
..++++|| ..++.+.+++.+..++.++|..+++.+|+|+..|++.+.|..+.|...++...+.++..+.+..
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 35889999 6778999999999999999999999999999999999999999999999999999998877654
No 243
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=97.77 E-value=6.7e-05 Score=61.05 Aligned_cols=71 Identities=28% Similarity=0.471 Sum_probs=65.9
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
..+++.|| +.++.+++.+.+..|+.+||..+++.+|+|+..|++.+.|..+.|...+....+.++..+.+.
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEEC
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEE
Confidence 46788999 888999999999999999999999999999999999999999999999999999999887764
No 244
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.74 E-value=4.9e-05 Score=69.01 Aligned_cols=75 Identities=27% Similarity=0.382 Sum_probs=65.7
Q ss_pred CCCcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhcc---ccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 2 GDNEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLP---LTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 2 ~~~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~---~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
++.+|+|+||+ .++++.|++..+.|+.+||..|.+ .+|+++..|+|++.|+.+.|...+....+.++..+.++..
T Consensus 4 ~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 4 GSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp --CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred CCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 45689999996 588999999999999999999998 6789999999999999999999999999999988744443
No 245
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.71 E-value=4.4e-05 Score=63.21 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=43.4
Q ss_pred ccCCCCCCEEEcccCcCC-----CcchhhcCCCCCCEEeccCCcCc-----cCCccccCCCCCcEEECCCC---CCC---
Q 017986 211 LGHLTALQHLDVSNNKLT-----TLPTEIGLLSKLEVLKANNNRIS-----FLPESIGNCTSLIEIDLSSN---LLS--- 274 (363)
Q Consensus 211 l~~l~~L~~L~l~~n~i~-----~l~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~~~L~~L~L~~n---~l~--- 274 (363)
+..-+.|+.|++++|.+. .+...+..-+.|+.|+|++|.|. .+.+.+..-..|++|+|++| .+.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 333444555555555544 22333444455555555555555 22233444455777777654 233
Q ss_pred --CCChhccCCCCCCEEECCCCC
Q 017986 275 --ELPVTLENLHYLKALHLDNNA 295 (363)
Q Consensus 275 --~l~~~~~~~~~L~~L~L~~n~ 295 (363)
.+...+..-+.|+.|+++.|.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCCC
Confidence 133345556677777776654
No 246
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=5.4e-05 Score=54.06 Aligned_cols=70 Identities=23% Similarity=0.324 Sum_probs=57.5
Q ss_pred CcEEEEEE-eCCeE--EEE-EeCCCCcHHHHHHhhcc-ccCCCCCCeEEEec--ceeecCCcccccccccCCcEEEE
Q 017986 4 NEIKITVK-FCGRP--IPI-TLSPDSTVLRLKNLLLP-LTNVLPRGQKLIFK--GKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 4 ~~~~~~v~-~~~~~--~~i-~~~~~~~~~~l~~~l~~-~~~~~~~~~~l~~~--~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
++|+++|| ..++. ..+ .+.+..|+.++|..|++ ..++++..|++.+. |..+.|+..++...+..+..+.+
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 46999999 44443 357 89999999999999999 47999999999976 88998988888888887776543
No 247
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=97.69 E-value=5.5e-06 Score=65.60 Aligned_cols=70 Identities=27% Similarity=0.404 Sum_probs=0.0
Q ss_pred EEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 6 IKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 6 ~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
|+|.||+ .++.+.+++.++.|+.+||..|++.+|+|+..|+|.+.|..+.|+..++...+.++..+.++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEe
Confidence 5788995 578999999999999999999999999999999999999999999999999998888766543
No 248
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.52 E-value=0.00021 Score=53.04 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=61.0
Q ss_pred CCcEEEEEEeCCeEEEEEeC-CCCcHHHHHHhhccccCCCCCCeEEEecce-----------e----ecCCccccccccc
Q 017986 3 DNEIKITVKFCGRPIPITLS-PDSTVLRLKNLLLPLTNVLPRGQKLIFKGK-----------V----LANEETLGVAGVT 66 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~-~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~-----------~----~~d~~~~~~~~~~ 66 (363)
.+.|.+.||.......|.+. +..|+.+||..|++.+++|+..|++.+.+. . ..|...+..+.+.
T Consensus 5 ~~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CCeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 45688999955555578899 999999999999999999999999998876 3 3667778889899
Q ss_pred CCcEEEEeec
Q 017986 67 NGVKLMLIGT 76 (363)
Q Consensus 67 ~~~~l~~~~~ 76 (363)
++..+.+...
T Consensus 85 ~G~~L~l~~~ 94 (107)
T 1wf9_A 85 HGSMVYLAYE 94 (107)
T ss_dssp TTCEEECCCS
T ss_pred CCCEEEEEeC
Confidence 8888766544
No 249
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.41 E-value=0.0008 Score=48.89 Aligned_cols=76 Identities=21% Similarity=0.197 Sum_probs=62.4
Q ss_pred CCCCcEEEEEEe----CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecc-------eee-cCCcccccccccCC
Q 017986 1 MGDNEIKITVKF----CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKG-------KVL-ANEETLGVAGVTNG 68 (363)
Q Consensus 1 ~~~~~~~~~v~~----~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~-------~~~-~d~~~~~~~~~~~~ 68 (363)
+.++.++++|+. .+..+...+....|+.+||..|+..+|+|+..|++.+.+ ..+ .|...+....+.++
T Consensus 5 ~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G 84 (97)
T 1wjn_A 5 SSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENG 84 (97)
T ss_dssp SSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTT
T ss_pred ccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCC
Confidence 356788999984 466888999999999999999999999999999999873 223 55567899999999
Q ss_pred cEEEEeec
Q 017986 69 VKLMLIGT 76 (363)
Q Consensus 69 ~~l~~~~~ 76 (363)
..+.+...
T Consensus 85 ~~I~V~d~ 92 (97)
T 1wjn_A 85 DCLLVRWS 92 (97)
T ss_dssp CEEEEECC
T ss_pred CEEEEEec
Confidence 98877653
No 250
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=97.35 E-value=0.00035 Score=49.60 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=57.3
Q ss_pred EEEEEEeCCeEEEEE-eCCCCcHHHHHHhhccccCCCCCCeEEEec--ceeec---CCcccccccccCCcEEEEeec
Q 017986 6 IKITVKFCGRPIPIT-LSPDSTVLRLKNLLLPLTNVLPRGQKLIFK--GKVLA---NEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 6 ~~~~v~~~~~~~~i~-~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~--~~~~~---d~~~~~~~~~~~~~~l~~~~~ 76 (363)
|++.||+.+....+. +.++.|+.+||..|++.+|+++..|++.+. ++.+. +...++.+.+.++..+.+...
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 568999877777788 999999999999999999999999999865 35553 456788888888887666543
No 251
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=97.27 E-value=3.9e-05 Score=62.49 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=0.0
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccc
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLG 61 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~ 61 (363)
|+|.|| ..++++.+++.+++|+.++|..|++.+|+|+..|+|++.|..+.|...++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs 57 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT 57 (189)
T ss_dssp ---------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc
Confidence 578899 67889999999999999999999999999999999999999999987666
No 252
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=97.20 E-value=0.0014 Score=46.81 Aligned_cols=76 Identities=12% Similarity=0.212 Sum_probs=66.9
Q ss_pred CCCCcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 1 MGDNEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 1 ~~~~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
|.+..|+++|+ ..++.+.+.+...++...+++.+.+..|+++...++.|.|..+.+....+.+.+.++..+.+.-.
T Consensus 1 ~~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 1 MANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 55678999999 57778999999999999999999999999999999999999999999999999999998777543
No 253
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.05 E-value=0.0018 Score=46.62 Aligned_cols=72 Identities=11% Similarity=0.192 Sum_probs=65.7
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
..|+++|| ..++.+.+.+...+++..+++.+.+..|+++..+++.|.|..+.+....+.+.+.++..+.+.-
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 46888998 5777899999999999999999999999999999999999999999999999999999877654
No 254
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=96.97 E-value=0.0034 Score=42.71 Aligned_cols=68 Identities=12% Similarity=0.190 Sum_probs=62.3
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEE
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
|+++|+ ..++.+.+.+...++...+.+.+.+..|+++..+++.|.|..+.+....+.+.+.++..+.+
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 789999 56778999999999999999999999999999999999999999999999999998887665
No 255
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=96.96 E-value=0.0038 Score=43.29 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=65.0
Q ss_pred CCcEEEEEE-eCCe-EEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 3 DNEIKITVK-FCGR-PIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 3 ~~~~~~~v~-~~~~-~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
+..|+++|+ ..++ .+.+.+...++...+.+.+.+..|+++..+++.|.|..+.+....+.+.+.++..+.+.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 467899999 5664 89999999999999999999999999999999999999999999999999999887765
No 256
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.65 E-value=0.0037 Score=48.03 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=31.4
Q ss_pred eeecccccCc--cCChhhhhcCCceeEEEccCCcCccccc-cccCCCCCCEEEcCCCCCC
Q 017986 123 VIALAEHNLK--AIPDEVWDCSPFIRVLDIRTNSIQCVPD-QIDGLTGLKKLLLDANDLS 179 (363)
Q Consensus 123 ~L~l~~n~i~--~i~~~~~~~~~~L~~L~L~~n~i~~i~~-~~~~l~~L~~L~L~~n~~~ 179 (363)
.++.+++.++ .+|..+ .++|++|+|++|+|+.++. .|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666666 666543 2346666666666666643 3455566666666666543
No 257
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=96.30 E-value=0.016 Score=41.48 Aligned_cols=71 Identities=11% Similarity=0.199 Sum_probs=63.8
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
..|+++|+ ..++.+.+.+...++...+.+.+.+..|+++...++.|.|..+.+......+.+.++..+.+.
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~ 87 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 87 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 46888888 466788999999999999999999999999999999999999999999999999999887664
No 258
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.17 E-value=0.016 Score=42.38 Aligned_cols=71 Identities=11% Similarity=0.199 Sum_probs=64.6
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
..|+++|+ ..++.+.+.+...+++..|.+.+.+..|+++...++.|.|..+.+......+.+.++..+.+.
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~ 94 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 94 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 47889998 567789999999999999999999999999999999999999999999999999999887764
No 259
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=95.97 E-value=0.012 Score=43.41 Aligned_cols=72 Identities=10% Similarity=0.160 Sum_probs=64.6
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
..|+++|+ ..++.+.+.+...+++..++..+.+..|+++..+++.|.|..+.+......+.+.++..+.+.-
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~ 97 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMV 97 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 46999999 4667899999999999999999999999999999999999999999999999999988876643
No 260
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=95.85 E-value=0.03 Score=40.99 Aligned_cols=72 Identities=10% Similarity=0.113 Sum_probs=64.0
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
+..|+++|+-.++.+.+.+...++...+.+.+.+..|+++...++.|.|..+.+....+.+.+.++..+.+.
T Consensus 29 ~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~ 100 (106)
T 2eke_C 29 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 100 (106)
T ss_dssp CSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEE
Confidence 345888888766789999999999999999999999999999999999999999999999999999887664
No 261
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=93.99 E-value=0.22 Score=36.86 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=63.3
Q ss_pred CcEEEEEEe-CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 4 NEIKITVKF-CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 4 ~~~~~~v~~-~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
.-|+++|+- .++.+.+.+...++...|.+.+.+..|+++...++.|.|..+.+......+.+.++..+.+.
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~ 110 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVY 110 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 568889984 56678899999999999999999889999999999999999999999999999999887764
No 262
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.32 Score=39.85 Aligned_cols=73 Identities=10% Similarity=0.094 Sum_probs=66.2
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 4 NEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 4 ~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
.-|+++|+..++.+.+.+...++...|++.+.+..|+++...++.|.|..+.+......+.+.++..+.+.-.
T Consensus 28 ~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 28 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp CCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence 4588899888889999999999999999999999999999999999999999999999999999999776543
No 263
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=92.94 E-value=0.36 Score=34.22 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCccccc
Q 017986 13 CGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGV 62 (363)
Q Consensus 13 ~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~ 62 (363)
......+.+.+..++..+|+.+++-||+++..|.+.+.|..+.-+.....
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a 71 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLA 71 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBG
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCcc
Confidence 34456677889999999999999999999999999999988775544333
No 264
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=92.52 E-value=0.35 Score=39.03 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=65.8
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 4 NEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 4 ~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
.-|+++|+-.+..+.+.+...++...|.+.+.+..|+++...++.|.|..+.+......+.+.++..|.+.-.
T Consensus 56 e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~le 128 (207)
T 3tix_A 56 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE 128 (207)
T ss_dssp CEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCC
T ss_pred CcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 4588888877889999999999999999999999999999999999999999999999999999998777543
No 265
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=92.01 E-value=0.1 Score=36.03 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=41.2
Q ss_pred cEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEeccee
Q 017986 5 EIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKV 53 (363)
Q Consensus 5 ~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~ 53 (363)
+|.+.||......-|.++++.++.+|+..|.+.+++++..+.+.+....
T Consensus 4 ~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p 52 (80)
T 2pjh_A 4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNK 52 (80)
T ss_dssp CCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCG
T ss_pred cEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCC
Confidence 4778888888888899999999999999999999998887777655543
No 266
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=87.87 E-value=3.3 Score=29.48 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=60.8
Q ss_pred CCcEEEEEEe-CCe-EEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 3 DNEIKITVKF-CGR-PIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 3 ~~~~~~~v~~-~~~-~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
+..|+++|+- .++ .+.+.+...+....|-+...+..|+.+..-++.|.|..+......+.+.+.++..+.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3568888885 443 68888889999999998888888999988899999999999999999999998887664
No 267
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=84.96 E-value=4.2 Score=28.64 Aligned_cols=73 Identities=10% Similarity=0.068 Sum_probs=64.7
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEee
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 75 (363)
+..|+++|+..+......+...+...-|-..+-+..|+.+..-++.|.|..+.....-..+.+.++..+.+.-
T Consensus 19 ~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 19 PRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 3469999998888999999999999999988888889999999999999999999999999999988876643
No 268
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.24 E-value=1.3 Score=31.78 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=29.6
Q ss_pred cccCccCChhhhhcCCceeEEEccCCcCcccc-ccccCCCCCCEEEcCCC
Q 017986 128 EHNLKAIPDEVWDCSPFIRVLDIRTNSIQCVP-DQIDGLTGLKKLLLDAN 176 (363)
Q Consensus 128 ~n~i~~i~~~~~~~~~~L~~L~L~~n~i~~i~-~~~~~l~~L~~L~L~~n 176 (363)
|..++.|...+|..+..|+.+.|..+ ++.|. .+|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44566667777777777777777653 45452 34666666666666543
No 269
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=81.58 E-value=4.1 Score=33.57 Aligned_cols=74 Identities=9% Similarity=0.105 Sum_probs=65.2
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeec
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGT 76 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~ 76 (363)
++.|+++|+-.+..+.+.+..++....|++.+.+..|+++...++.|.|..+.+......+...++..+.+...
T Consensus 19 ~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp CSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred CCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 56788888876668889999999999999999999999999999999999999999999999998888766543
No 270
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.15 E-value=1.7 Score=31.23 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=24.0
Q ss_pred hhccCCCCCCEEECCCCCCCCCChhhhhCCCCCCEEEccC
Q 017986 278 VTLENLHYLKALHLDNNALKSLPTTLFSKCVQLSTLELHN 317 (363)
Q Consensus 278 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 317 (363)
.+|..|.+|+.+.+-.+ ++.|...+|.+|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34556666666666543 5566666666666666666654
No 271
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=76.59 E-value=6.2 Score=26.95 Aligned_cols=69 Identities=26% Similarity=0.373 Sum_probs=51.9
Q ss_pred cEEEEEE---eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCC---e--EEEecceeecCCcccccccccCCcEEEE
Q 017986 5 EIKITVK---FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRG---Q--KLIFKGKVLANEETLGVAGVTNGVKLML 73 (363)
Q Consensus 5 ~~~~~v~---~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~---~--~l~~~~~~~~d~~~~~~~~~~~~~~l~~ 73 (363)
-|+||++ |.++.+++.+....++..|...+.+..+++... - ++.=++..+.+.+.+....+.+|..+++
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4788998 699999999999999999997777666554421 1 2334567778888888888888887664
No 272
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=76.46 E-value=9.5 Score=26.57 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=60.3
Q ss_pred EEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEeeccCc
Q 017986 6 IKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLIGTQGV 79 (363)
Q Consensus 6 ~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~ 79 (363)
+.|+|- ..++...|.+.+..++.++=..--+-.|+.+..-.+.+.++.+.-.-.+....+.++.++++......
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 378888 67779999999999999975444444578888888899999997778899999999999999776544
No 273
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=74.34 E-value=0.64 Score=38.09 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 4 NEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 4 ~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
.-|+++|.-.+..+.+.+..++....+.+.+.+..|+++...++.|.|..+.+....+.+.+.++..+.+.
T Consensus 20 e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~ 90 (227)
T 3v7o_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90 (227)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEE
Confidence 34666776666788888889999999999999999999999999999999999999999999988886654
No 274
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=68.25 E-value=12 Score=26.09 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=35.0
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCC
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLP 42 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~ 42 (363)
++.++|++-+.+...-+.+.++.+.++|...+.+.++++.
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCS
T ss_pred CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 4568888889999999999999999999999999997764
No 275
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=59.21 E-value=2 Score=38.52 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 4 NEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 4 ~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
.-|+++|+-++..+.+.+..+++...|.+...+..|+++...++.|.|..+.+..+.+.+.+.++..+.+.
T Consensus 20 ~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~ 90 (360)
T 3ix6_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90 (360)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhh
Confidence 35777787766778888889999999999999999999999999999999999999999999988886653
No 276
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=57.91 E-value=40 Score=22.71 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=57.8
Q ss_pred EEEEEEeCCe-EEEEEeCCCCcHHHHHHhhccccCCCCC-CeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 6 IKITVKFCGR-PIPITLSPDSTVLRLKNLLLPLTNVLPR-GQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 6 ~~~~v~~~~~-~~~i~~~~~~~~~~l~~~l~~~~~~~~~-~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
|++..|..+. .+.+.+....++.++=.......++++. .-++.|-|..+...+....+++.++..+.++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 6667774444 7888888999999999888888899998 7788999999999999999999998876653
No 277
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=57.84 E-value=25 Score=24.01 Aligned_cols=48 Identities=8% Similarity=0.182 Sum_probs=39.3
Q ss_pred CCcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecc
Q 017986 3 DNEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKG 51 (363)
Q Consensus 3 ~~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~ 51 (363)
...++|+|.+. -++.|.+..+....+|.+.+.+-..+++..-++.++.
T Consensus 3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 34577777777 7999999999999999999998888887666666655
No 278
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=44.52 E-value=4.7 Score=36.73 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=0.0
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEEecceeecCCcccccccccCCcEEEEe
Q 017986 4 NEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLIFKGKVLANEETLGVAGVTNGVKLMLI 74 (363)
Q Consensus 4 ~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~~~~~~~l~~~ 74 (363)
.-|.++|+-.+..+.+.+..+++...|.+.+.+..|+++...++.|.|..+.+..+.+.+.+.++..+.+.
T Consensus 29 ~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~ 99 (389)
T 4da1_A 29 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAH 99 (389)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeee
Confidence 35677777666677788889999999999999999999999999999999999999999999888876553
No 279
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=25.75 E-value=1.8e+02 Score=20.65 Aligned_cols=72 Identities=10% Similarity=0.108 Sum_probs=49.6
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEE--ecceeecC---CcccccccccCCcEEEEee
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLI--FKGKVLAN---EETLGVAGVTNGVKLMLIG 75 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~--~~~~~~~d---~~~~~~~~~~~~~~l~~~~ 75 (363)
...++.|| ..+..+.-.+....++.++.+-+....+.+...-.+. +..+.+.+ ...+.++.+.+...+.+..
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 35889999 6777899999999999999977776654443333333 56666662 3567777777765555543
No 280
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=24.54 E-value=1.6e+02 Score=19.60 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=44.7
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEE--ecceeec--C-CcccccccccCCcEEEE
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLI--FKGKVLA--N-EETLGVAGVTNGVKLML 73 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~--~~~~~~~--d-~~~~~~~~~~~~~~l~~ 73 (363)
...++.|| ..|..+.-.+....++.++..-+.. .+..+..-++. +..+.+. | ...+..+.+.+...+.+
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 45689999 5666888889999999999977776 34444444444 4555563 2 24566666665444433
No 281
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=23.75 E-value=96 Score=21.16 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.9
Q ss_pred CcEEEEEEeCCeEEEEEeCCCCcHHHHHHhhccccCC
Q 017986 4 NEIKITVKFCGRPIPITLSPDSTVLRLKNLLLPLTNV 40 (363)
Q Consensus 4 ~~~~~~v~~~~~~~~i~~~~~~~~~~l~~~l~~~~~~ 40 (363)
+.++|++=+.+-.+.|.+.++.+..+|+..|.+.-.+
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3577777799999999999999999999887766544
No 282
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=22.05 E-value=2.4e+02 Score=20.64 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=45.5
Q ss_pred CcEEEEEE-eCCeEEEEEeCCCCcHHHHHHhhccccCCCCCCeEEE--ecceeec--C-CcccccccccCCcEEEE
Q 017986 4 NEIKITVK-FCGRPIPITLSPDSTVLRLKNLLLPLTNVLPRGQKLI--FKGKVLA--N-EETLGVAGVTNGVKLML 73 (363)
Q Consensus 4 ~~~~~~v~-~~~~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~l~--~~~~~~~--d-~~~~~~~~~~~~~~l~~ 73 (363)
...++.|| ..|..+.-.+....++.++..-+... +.++..-.+. |..+.+. | ...+..+.+.+...+.+
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv 116 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 116 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEE
Confidence 46889999 66778899999999999999777654 4443333333 5666663 2 34566666665444443
Done!