BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017987
         (363 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
           Cerevisiae
 pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
           Cerevisiae
 pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
           Cerevisiae
          Length = 589

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 141 SHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATM 200
           SH   G  P+ R + +P++L    +AL  +F       R+++G   W+ I    +D    
Sbjct: 304 SHTDVGTSPLFRYNLVPFELKDWKIALAELF-------RYINGTDCWSTIYLENHDQPRS 356

Query: 201 VIS-GTDNSTDECIKDSLLRYIMA 223
           +   G D+  +  I   LL  +++
Sbjct: 357 ITRFGDDSPKNRVISGKLLSVLLS 380


>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
 pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
          Length = 589

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 141 SHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATM 200
           SH   G  P+ R + +P++L    +AL  +F       R+++G   W+ I    +D    
Sbjct: 304 SHTDVGTSPLFRYNLVPFELKDWKIALAELF-------RYINGTDCWSTIYLENHDQPRS 356

Query: 201 VIS-GTDNSTDECIKDSLLRYIMA 223
           +   G D+  +  I   LL  +++
Sbjct: 357 ITRFGDDSPKNRVISGKLLSVLLS 380


>pdb|3HP0|A Chain A, Crystal Structure Of A Putative Polyketide Biosynthesis
          Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
 pdb|3HP0|B Chain B, Crystal Structure Of A Putative Polyketide Biosynthesis
          Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
 pdb|3HP0|C Chain C, Crystal Structure Of A Putative Polyketide Biosynthesis
          Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
 pdb|3HP0|D Chain D, Crystal Structure Of A Putative Polyketide Biosynthesis
          Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
 pdb|3HP0|E Chain E, Crystal Structure Of A Putative Polyketide Biosynthesis
          Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
 pdb|3HP0|F Chain F, Crystal Structure Of A Putative Polyketide Biosynthesis
          Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
          Length = 267

 Score = 28.1 bits (61), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 22 LKLQPSITTLTFPSKSPNPLTFKTL--SCLESQSQSETKTLTLISVLRAIPD 71
          ++ Q S+  +TF     N     TL   CL+  +Q ET T+T++ VL  +P+
Sbjct: 11 VRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETSTVTVV-VLEGLPE 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,771,207
Number of Sequences: 62578
Number of extensions: 296573
Number of successful extensions: 759
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 3
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)