Query 017987
Match_columns 363
No_of_seqs 183 out of 698
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3781 Predicted membrane pro 100.0 3.1E-69 6.7E-74 502.4 28.3 255 101-363 7-265 (306)
2 PF01062 Bestrophin: Bestrophi 100.0 3.3E-60 7.3E-65 456.0 26.0 259 93-363 6-271 (293)
3 KOG3547 Bestrophin (Best vitel 98.6 8.2E-07 1.8E-11 90.9 15.7 265 88-363 5-298 (450)
4 PF14023 DUF4239: Protein of u 97.3 0.08 1.7E-06 48.8 21.2 68 158-229 2-69 (209)
5 COG2238 RPS19A Ribosomal prote 56.1 7.8 0.00017 34.3 2.0 38 58-97 12-54 (147)
6 PF01988 VIT1: VIT family; In 49.9 91 0.002 28.9 8.2 30 303-332 128-157 (213)
7 cd02433 Nodulin-21_like_2 Nodu 39.9 1.9E+02 0.004 27.6 8.7 49 304-352 148-198 (234)
8 cd08816 CARD_RIG-I_1 Caspase a 38.9 87 0.0019 25.5 5.3 81 220-303 7-88 (89)
9 PF10947 DUF2628: Protein of u 28.4 1.4E+02 0.0029 24.5 5.1 63 105-179 42-104 (108)
10 COG3086 RseC Positive regulato 25.1 1.4E+02 0.0031 26.6 4.8 28 158-189 109-136 (150)
11 PLN02673 quinolinate synthetas 25.1 1.1E+02 0.0024 33.8 4.9 48 30-77 49-103 (724)
12 PF15278 Sec3_C_2: Sec3 exocys 24.3 69 0.0015 25.5 2.4 25 281-305 40-64 (86)
13 PRK05097 Ter macrodomain organ 24.1 2E+02 0.0044 25.5 5.5 49 223-272 14-62 (150)
14 PF13096 CENP-P: CENP-A-nucleo 22.9 60 0.0013 29.7 2.1 21 166-186 60-80 (177)
15 COG0818 DgkA Diacylglycerol ki 22.8 2.3E+02 0.0049 24.6 5.5 69 287-361 10-78 (123)
16 PRK09333 30S ribosomal protein 22.0 63 0.0014 28.9 2.0 38 58-97 12-54 (150)
17 TIGR01248 drrC daunorubicin re 22.0 3.3E+02 0.0071 23.6 6.6 16 295-310 17-32 (152)
No 1
>COG3781 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.1e-69 Score=502.45 Aligned_cols=255 Identities=24% Similarity=0.381 Sum_probs=239.5
Q ss_pred hhHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhccccccCCCCcccccccCCchhHhHHHHHHHHHHhcchhHHHHH
Q 017987 101 RHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRF 180 (363)
Q Consensus 101 R~~~~ll~~~~gsVl~~i~~~vl~~~~~a~~V~~l~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLvFRtNsAY~Rw 180 (363)
.||.++++.++|||+++|.|+++.++++|++|.+++... .|. ......+||++.|++||++||||||+|||||
T Consensus 7 ~hw~r~~f~~rGSVl~~i~~rll~~~~fS~~v~~~~~w~----~~~---~i~~~~tpf~i~giaLai~L~FRnNaaYdR~ 79 (306)
T COG3781 7 QHWLRLIFVWRGSVLPKILPRLLLCFLFSLVVTAVLPWY----TPL---SIPFTLTPFSIPGIALAIFLGFRNNAAYDRY 79 (306)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhh----ccc---cceeccCcchhHHHHHHHHHhhccchHHHHH
Confidence 467789999999999999999999999999999887632 121 2334568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhhcCCHHHHHHHhcCCCc
Q 017987 181 VDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR 260 (363)
Q Consensus 181 wEaRk~WG~lvn~sRnlar~~~~~~~~~~d~~~~~~l~r~~vAf~~aLk~hLR~~~d~~~eL~~lL~~~e~~~l~~a~n~ 260 (363)
|||||+||+++|.+||++|++++.++++.|.++++++++.++||++|+|.|||++ +..+|+..+|+.+.++.++.+.|+
T Consensus 80 wEaRKlWG~lvn~~Rnl~R~i~t~v~e~~d~a~~~~~l~llvAFahalr~~LR~q-p~~~~l~a~l~~~~~~kv~a~~np 158 (306)
T COG3781 80 WEARKLWGQLVNAIRNLARQIWTLVPETLDSADVREFLRLLVAFAHALRLQLRKQ-PQNEDLAALLPTSDYEKVLASNNP 158 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHhcCHHHHHHHHhccCC
Confidence 9999999999999999999999999877899999999999999999999999986 568999999999999999999999
Q ss_pred HHHHHHHHHHHHHc----ccCChHHHHHHHHHHHHHHhhhhhhhhhcCCCCchhhHHHHHHHHHHHHHHhhhHhhhccCc
Q 017987 261 PRCIIEFISQSLQL----LNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHW 336 (363)
Q Consensus 261 P~~il~~l~~~l~~----~~l~~~~~~~l~~~l~~l~d~~G~cERI~~TPiP~~Y~~h~~~fl~lyll~LPF~Lv~~~gW 336 (363)
|++++.+|++++++ |.+|+.+...|++.++.+.|.+||||||.+||+|++|+.|+||.+++||++|||+||.++||
T Consensus 159 p~ei~~wmGe~l~~q~r~g~l~~~~~~sl~~~L~~~s~vlggCERI~~TPiPfAYtl~lhrtvyl~C~~LPF~lV~tlgw 238 (306)
T COG3781 159 PLEIALWMGEWLQQQRRNGQLDAIQFTSLDRRLNSISAVLGGCERIAYTPIPFAYTLHLHRTVYLFCFLLPFGLVETLGW 238 (306)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHHhHHHHHHHccc
Confidence 99999999998864 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017987 337 IVVPATFISAASLFCIEEFVLRGWCPY 363 (363)
Q Consensus 337 ~tip~~~lva~~llGIeeIg~eiE~PF 363 (363)
+|+.++++|||+|+|+|+||.||||||
T Consensus 239 ~Tp~~s~lIayTffgleaia~EiEdPF 265 (306)
T COG3781 239 ATPFFSVLIAYTFFGLEAIAEEIEDPF 265 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999
No 2
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=100.00 E-value=3.3e-60 Score=455.99 Aligned_cols=259 Identities=29% Similarity=0.451 Sum_probs=231.3
Q ss_pred HHhhhccchhHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhccccccCCCCcccccccCCchhHhHHHHHHHHHHhc
Q 017987 93 WVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFR 172 (363)
Q Consensus 93 W~~hrs~~R~~~~ll~~~~gsVl~~i~~~vl~~~~~a~~V~~l~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLvFR 172 (363)
+..||++ ++|.++++.++|+|+++++++++++++++++|++++.... ...+..+..+++++|++|||+||||
T Consensus 6 ~~~~~~~-~~~~~~l~~~~gsv~~~i~~~ll~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~l~g~~l~~lL~Fr 77 (293)
T PF01062_consen 6 NQDVRTS-RSWWRLLFRWRGSVLKRIWPPLLVFLALAAAVALLYIFEP-------ICWLSLPSSPFSLLGIALSFLLVFR 77 (293)
T ss_pred ccccCCc-ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cccccccccchhHHHHHHHHHHHHH
Confidence 3457777 6666888899999999999999999999999999874221 1245567788999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhhcC---CHH
Q 017987 173 TEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLL---DAD 249 (363)
Q Consensus 173 tNsAY~RwwEaRk~WG~lvn~sRnlar~~~~~~~~~~d~~~~~~l~r~~vAf~~aLk~hLR~~~d~~~eL~~lL---~~~ 249 (363)
||+||+|||||||+||+++|.+||++++++++++++ .++++++|+++||++++|+|||++++ ..++++++ .++
T Consensus 78 ~n~ay~Rwwe~r~~wg~l~~~~r~l~~~~~~~~~~~---~~~~~l~r~~ia~~~~~~~~lR~~~~-~~~~~~ll~~g~~~ 153 (293)
T PF01062_consen 78 TNTAYDRWWEARKLWGNLVNWSRNLARQICAFVPDD---DERRRLLRRLIAFAVALKAHLRGEST-SEELEDLLEAGLTE 153 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---hhHHHHHHHHHHHHHHHHHHhcCCCh-hhhhhhhhhccchH
Confidence 999999999999999999999999999999999632 23889999999999999999998764 44577776 665
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHc----ccCChHHHHHHHHHHHHHHhhhhhhhhhcCCCCchhhHHHHHHHHHHHHHH
Q 017987 250 DLAIVLDSKHRPRCIIEFISQSLQL----LNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLT 325 (363)
Q Consensus 250 e~~~l~~a~n~P~~il~~l~~~l~~----~~l~~~~~~~l~~~l~~l~d~~G~cERI~~TPiP~~Y~~h~~~fl~lyll~ 325 (363)
|.+.+.++.|+|+.++..+++.+++ |.+++....+|+++++++.|++|+||||++||+|++|++|+++++++|+++
T Consensus 154 ~~~~l~~~~~~p~~i~~~~~~~l~~~~~~g~~~~~~~~~l~~~l~~l~~~~g~~eri~~TPiP~~Y~~~~~~~l~~y~~~ 233 (293)
T PF01062_consen 154 EERRLESADNPPNWILIQWSQRLREARREGLIDSFQLAQLDNELNALRDAQGGCERIKNTPIPFAYTQHLSRFLYIYLLL 233 (293)
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHhhhheeCCCcCCHHHHHHHHHHHHHHHHH
Confidence 5567888899999999999888764 579999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhccCcchHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017987 326 LPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWCPY 363 (363)
Q Consensus 326 LPF~Lv~~~gW~tip~~~lva~~llGIeeIg~eiE~PF 363 (363)
+||++++++||++||++++++|+|+|+|+||.||||||
T Consensus 234 lPf~l~~~~~~~~~~~~~l~~~~~~gl~~ig~~ledPF 271 (293)
T PF01062_consen 234 LPFGLVDSLGWLTPPITFLVSFFFLGLEEIGEELEDPF 271 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999
No 3
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=98.63 E-value=8.2e-07 Score=90.92 Aligned_cols=265 Identities=15% Similarity=0.145 Sum_probs=163.6
Q ss_pred CChhhHHhhhccchhHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhcc-ccccCCCCcccccccCCchhHhHHHHHH
Q 017987 88 YSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSA-LDSHLLPGFLPVLRASSLPYQLTAPALA 166 (363)
Q Consensus 88 y~~~~W~~hrs~~R~~~~ll~~~~gsVl~~i~~~vl~~~~~a~~V~~l~~~-~~~~~~p~~~p~l~~~~~p~sllg~aLs 166 (363)
|+.+ ... |...-+..+++.++|||++.|+..+++..+.=.+|.+++.+ ..... ...+..+..---.. .--+.|+
T Consensus 5 Y~~~--v~t-~~~~~f~kll~rWkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~q-q~~Fe~~~~~~d~~-~~~iPLt 79 (450)
T KOG3547|consen 5 YNLD--VAT-SYSFTFLKLLLRWKGSIWKAIWKELLIWLILYYIISVIYRFALTESQ-QETFEKFVMYCDSR-LDFIPLT 79 (450)
T ss_pred ehHH--hhh-hccHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcc-cccccch
Confidence 5555 455 55566778999999999999999877764444444444432 11000 00000000000000 0122678
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--ChHHHHHHHHHHHH-HHH-----HHHhcccCCCCC
Q 017987 167 LLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNST--DECIKDSLLRYIMA-FPV-----ALKGHVICDSDV 238 (363)
Q Consensus 167 LLLvFRtNsAY~RwwEaRk~WG~lvn~sRnlar~~~~~~~~~~--d~~~~~~l~r~~vA-f~~-----aLk~hLR~~~d~ 238 (363)
|+|||=.++-.+|||+-=..-|-+ +|++..+++++++.+ ....|+.++|+++. -+- ++|-.-| -+.
T Consensus 80 FmLGFfVt~Vv~RW~~~f~nig~i----d~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkR-FPt- 153 (450)
T KOG3547|consen 80 FMLGFFVTIVVDRWWKQFRNIGWI----DNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKR-FPT- 153 (450)
T ss_pred HhhhhhHHHHHHHHHHHHhccCch----HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-
Confidence 899999999999999987766655 666777778886522 23456677776532 111 1222222 222
Q ss_pred cchh--hhcCCHHHHHHHhc---CCC-c---H-HHHHHHHHHHHHcccCCh-HHHHHHHHHHHHHHhhhhhhhhhcCCCC
Q 017987 239 SGDL--QDLLDADDLAIVLD---SKH-R---P-RCIIEFISQSLQLLNLEA-TKQNMLESKISCFHEGIGVCEQLMGIPI 307 (363)
Q Consensus 239 ~~eL--~~lL~~~e~~~l~~---a~n-~---P-~~il~~l~~~l~~~~l~~-~~~~~l~~~l~~l~d~~G~cERI~~TPi 307 (363)
.+.+ .++++++|++.+.. +.| + | +.+.+.+.+.-++|.+.+ .....+.+.+.++-..++..=.-=-.||
T Consensus 154 ~d~lv~AG~mt~~E~~~~~~~~~~~~~kyw~Pi~Wa~sl~~~a~~~g~i~~d~~~~~~~~ei~~fR~~l~~L~~yDwVpI 233 (450)
T KOG3547|consen 154 LDHLVEAGLMTEEELDILENIVDSKYMKYWVPINWAFSLLRKARKEGRIESDYLYNSLLGEIKKFRTGLSLLCNYDWVPI 233 (450)
T ss_pred hHHHHHhcCCcHHHHHHHHhcccccccceeecHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhccccCCCceec
Confidence 2233 68999999988843 233 2 3 577788888888898843 3555666666666655554444445899
Q ss_pred chhhHHHHHHHHHHHHHHhhhH----h-----hhccCcchHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017987 308 PLSYTRLTSRFLVLWHLTLPII----L-----WDDCHWIVVPATFISAASLFCIEEFVLRGWCPY 363 (363)
Q Consensus 308 P~~Y~~h~~~fl~lyll~LPF~----L-----v~~~gW~tip~~~lva~~llGIeeIg~eiE~PF 363 (363)
|+.|.+-....+.+|.++-=|+ . .++..+..|..|.+=-.++.|--.+|+.+-|||
T Consensus 234 PL~YpQvV~lAVr~YF~~cL~~RQ~l~~~~~~~~~id~~fPi~T~lQFiF~vGWmKVaE~LlNP~ 298 (450)
T KOG3547|consen 234 PLVYPQVVFLAVRSYFFICLFGRQYLDRDDSKKTEIDLYFPIMTILQFIFYVGWLKVAEVLLNPL 298 (450)
T ss_pred cccccceeeeehHHhHHHHhhccccCCcccccccccceeehhHHHHHHHHHhhHHHHHHHHhCCC
Confidence 9999987766555554433222 1 123467788888888888899999999999997
No 4
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=97.31 E-value=0.08 Score=48.79 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=53.9
Q ss_pred hHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHH
Q 017987 158 YQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALK 229 (363)
Q Consensus 158 ~sllg~aLsLLLvFRtNsAY~RwwEaRk~WG~lvn~sRnlar~~~~~~~~~~d~~~~~~l~r~~vAf~~aLk 229 (363)
++++|+..|++|+|=.+.+|+|+.++++.--.=.+..+++.+.+..+.+.+ .++++...+..|..++-
T Consensus 2 ~~~vg~l~al~laf~~~~~~~~~~~a~~~v~~EA~al~~l~~~~~~lp~~~----~~~~~r~~l~~Y~~~vv 69 (209)
T PF14023_consen 2 FGVVGVLFALLLAFTISSAWSRYDNARQAVNQEANALGTLYRLLASLPEPP----DRDEIRALLRAYTRAVV 69 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc----hhHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999988764112 24455566666666553
No 5
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=56.11 E-value=7.8 Score=34.27 Aligned_cols=38 Identities=34% Similarity=0.490 Sum_probs=30.6
Q ss_pred chhHHHHHHhhC-----CCchhhhhhhhccccccCCChhhHHhhh
Q 017987 58 KTLTLISVLRAI-----PDWADRVKERGVKQKRTLYSHEKWVEHR 97 (363)
Q Consensus 58 ~~~~~~~~~~~~-----~~~~d~~~e~~~~~rr~~y~~~~W~~hr 97 (363)
..+.+.+.|+.- |+|+|-+|-+.++-|.+. .+||..-|
T Consensus 12 lI~~lA~~LK~~~kv~pP~wa~~vKTG~~kE~~P~--~~DWwY~R 54 (147)
T COG2238 12 LIEALASYLKETGKVKPPEWADIVKTGVHKERPPE--QEDWWYVR 54 (147)
T ss_pred HHHHHHHHHHhcCCcCChhhhhhhhccccccCCCC--CCchHHHH
Confidence 566677777664 999999999999988887 88898654
No 6
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=49.89 E-value=91 Score=28.87 Aligned_cols=30 Identities=17% Similarity=0.046 Sum_probs=24.1
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhhHhhh
Q 017987 303 MGIPIPLSYTRLTSRFLVLWHLTLPIILWD 332 (363)
Q Consensus 303 ~~TPiP~~Y~~h~~~fl~lyll~LPF~Lv~ 332 (363)
...|+=-+.......++...+-++||.+.+
T Consensus 128 ~~~p~~~al~~~~sf~lg~liPllp~~~~~ 157 (213)
T PF01988_consen 128 EESPWKAALATFLSFILGGLIPLLPYFFLP 157 (213)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346666677788888888889999999987
No 7
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=39.88 E-value=1.9e+02 Score=27.60 Aligned_cols=49 Identities=12% Similarity=-0.059 Sum_probs=31.4
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhhhHhhhcc--CcchHHHHHHHHHHHHHH
Q 017987 304 GIPIPLSYTRLTSRFLVLWHLTLPIILWDDC--HWIVVPATFISAASLFCI 352 (363)
Q Consensus 304 ~TPiP~~Y~~h~~~fl~lyll~LPF~Lv~~~--gW~tip~~~lva~~llGI 352 (363)
..|+=-+.+..++.++...+-+|||.+.... .+.+..++.+++.+++|.
T Consensus 148 ~~P~~aAl~sflsF~ig~liPLLPf~~~~~~~~~~~~s~~~~~~~L~~lG~ 198 (234)
T cd02433 148 GNPWSAAVSSFLLFALGALIPVLPFLFGMSGLAALVLSVLLVGLALLATGA 198 (234)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3466677888888888888999999875432 233333344455555554
No 8
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=38.89 E-value=87 Score=25.52 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcccCCCCCcchhhhcCCHHHHHHHhcCCCc-HHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHhhhhh
Q 017987 220 YIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR-PRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGV 298 (363)
Q Consensus 220 ~~vAf~~aLk~hLR~~~d~~~eL~~lL~~~e~~~l~~a~n~-P~~il~~l~~~l~~~~l~~~~~~~l~~~l~~l~d~~G~ 298 (363)
.+-||.--+|.-|+.. -+-.-+..++.+++++.+..-+|+ |....+..-..+.+..-.++-+.-+|..-+ .+-.|=
T Consensus 7 nL~af~~yi~ktl~P~-yIl~~m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~l~~lee~GWFqafLDaL~~--agY~gl 83 (89)
T cd08816 7 NLQRFRDYIKKILRPS-YILGFMTTWLEDEEVERILSEEEKGVTSAAQLFLDYVLKLEEEGWFQAFLDALYA--AGYTGL 83 (89)
T ss_pred HHHHHHHHHHHhhchH-HHHHHHHHhcCHHHHHHHHHHhccChHHHHHHHHHHHHHHccccHHHHHHHHHHh--cCcccH
Confidence 4457777788888753 244567888999999988765554 666666655555443333333333332222 134566
Q ss_pred hhhhc
Q 017987 299 CEQLM 303 (363)
Q Consensus 299 cERI~ 303 (363)
||-|.
T Consensus 84 ~eai~ 88 (89)
T cd08816 84 CEAIE 88 (89)
T ss_pred HHHhc
Confidence 77665
No 9
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=28.36 E-value=1.4e+02 Score=24.49 Aligned_cols=63 Identities=14% Similarity=-0.029 Sum_probs=36.9
Q ss_pred HHHHhcchhhhhhhHHHHHHHHHHHHHHHHHhccccccCCCCcccccccCCchhHhHHHHHHHHHHhcchhHHHH
Q 017987 105 HLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSR 179 (363)
Q Consensus 105 ~ll~~~~gsVl~~i~~~vl~~~~~a~~V~~l~~~~~~~~~p~~~p~l~~~~~p~sllg~aLsLLLvFRtNsAY~R 179 (363)
.+++.+==-..++++...+...++.++..++...+. ........++.+++++.+++-|.-|-|
T Consensus 42 Af~f~~~w~l~r~mw~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~l~~~~~~g~~~n~~y~~ 104 (108)
T PF10947_consen 42 AFFFGPLWLLYRKMWLYAIIFLALLVALAIILILLG------------FPPGLGLGLSLAISLFFGMFANYWYYR 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433334456666666666666655555544221 011222367888899999999988765
No 10
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.14 E-value=1.4e+02 Score=26.65 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=18.7
Q ss_pred hHhHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 017987 158 YQLTAPALALLLVFRTEASYSRFVDGKKAWTQ 189 (363)
Q Consensus 158 ~sllg~aLsLLLvFRtNsAY~RwwEaRk~WG~ 189 (363)
..++|+++|+++++| |+|--+.|..|--
T Consensus 109 ~~~lg~~l~fl~~r~----ysRkl~~~~~~Qp 136 (150)
T COG3086 109 GAFLGLALGFLLARR----YSRKLAKRTEWQP 136 (150)
T ss_pred HHHHHHHHHHHHHHH----HHHHhhhcccCCC
Confidence 345666666666654 8888888776643
No 11
>PLN02673 quinolinate synthetase A
Probab=25.06 E-value=1.1e+02 Score=33.84 Aligned_cols=48 Identities=31% Similarity=0.449 Sum_probs=30.6
Q ss_pred ccccCCCCCCCCCcCcccccc---cCCCC-CC---chhHHHHHHhhCCCchhhhh
Q 017987 30 TLTFPSKSPNPLTFKTLSCLE---SQSQS-ET---KTLTLISVLRAIPDWADRVK 77 (363)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~---~~~~~~~~~~~~~~~~d~~~ 77 (363)
++-++.-+||+-...|++|-+ |.+++ .. +.+.+++.++..++|-|.|+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~e~lP~kl~eIveeF~~l~dWEeRYr 103 (724)
T PLN02673 49 CIQSPPPDSAPSNASPFSCSAVAFSPSQTTELVPCKLQRLIKEFKSLTEPVDRVK 103 (724)
T ss_pred eecCCCCCCCCCCCCccceeeeecCCCcccccCCHHHHHHHHHHHhCCCHHHHHH
Confidence 344555566665677776543 22222 12 45678889999999999886
No 12
>PF15278 Sec3_C_2: Sec3 exocyst complex subunit
Probab=24.30 E-value=69 Score=25.46 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCC
Q 017987 281 KQNMLESKISCFHEGIGVCEQLMGI 305 (363)
Q Consensus 281 ~~~~l~~~l~~l~d~~G~cERI~~T 305 (363)
+.+++.+.-+.|.|+..|||-|.+|
T Consensus 40 ~~~~~~~i~~~L~D~~~GC~si~ST 64 (86)
T PF15278_consen 40 QKMQAQNIQSQLQDCIAGCDSIFST 64 (86)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhH
Confidence 4456667777889999999999876
No 13
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=24.13 E-value=2e+02 Score=25.49 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=31.6
Q ss_pred HHHHHHHhcccCCCCCcchhhhcCCHHHHHHHhcCCCcHHHHHHHHHHHH
Q 017987 223 AFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSL 272 (363)
Q Consensus 223 Af~~aLk~hLR~~~d~~~eL~~lL~~~e~~~l~~a~n~P~~il~~l~~~l 272 (363)
-|.|.+|.|=- ++.+..-.+.-+.++-++.|...+|-|..|+.+|.+.+
T Consensus 14 KW~YLvkKhre-GE~ITry~e~S~~~~aV~~L~~le~~P~~v~~WI~~hm 62 (150)
T PRK05097 14 KWKYLVKKHRE-GELITRYIEASAAQEAVDELLKLENEPVKVLEWIDKHM 62 (150)
T ss_pred chHHHHHHhcc-ccchHHHHHhhHHHHHHHHHHHhccCcHHHHHHHHHhc
Confidence 35566787743 34443333333345566778888999999999887643
No 14
>PF13096 CENP-P: CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P
Probab=22.90 E-value=60 Score=29.72 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.3
Q ss_pred HHHHHhcchhHHHHHHHHHHH
Q 017987 166 ALLLVFRTEASYSRFVDGKKA 186 (363)
Q Consensus 166 sLLLvFRtNsAY~RwwEaRk~ 186 (363)
.+++-||+=..|.+|.|-||.
T Consensus 60 ~L~lFFrsl~~~aew~e~R~~ 80 (177)
T PF13096_consen 60 DLLLFFRSLHSFAEWCEHRKR 80 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999984
No 15
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=22.78 E-value=2.3e+02 Score=24.61 Aligned_cols=69 Identities=10% Similarity=-0.064 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhhhhhhcCCCCchhhHHHHHHHHHHHHHHhhhHhhhccCcchHHHHHHHHHHHHHHHHHHHHhcC
Q 017987 287 SKISCFHEGIGVCEQLMGIPIPLSYTRLTSRFLVLWHLTLPIILWDDCHWIVVPATFISAASLFCIEEFVLRGWC 361 (363)
Q Consensus 287 ~~l~~l~d~~G~cERI~~TPiP~~Y~~h~~~fl~lyll~LPF~Lv~~~gW~tip~~~lva~~llGIeeIg~eiE~ 361 (363)
+.++.+.-+..|...--+ +-+-.|+=+++.++.+|++++=...+.......+..+..+..|-+-+-||.
T Consensus 10 rl~~a~~ys~~Gl~~a~~------~E~afR~e~~~~~~~i~~~~~l~~~~~e~lll~~si~lvl~vEllNTAIEa 78 (123)
T COG0818 10 RLIKAFGYSLKGLKAAWK------EEAAFRQELLAALVALVLAFFLGVSAIEWLLLILSIFLVLIVELLNTAIEA 78 (123)
T ss_pred HHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443322 234456677889999999999999988888888888889999998888874
No 16
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=22.02 E-value=63 Score=28.94 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=25.8
Q ss_pred chhHHHHHHh-----hCCCchhhhhhhhccccccCCChhhHHhhh
Q 017987 58 KTLTLISVLR-----AIPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (363)
Q Consensus 58 ~~~~~~~~~~-----~~~~~~d~~~e~~~~~rr~~y~~~~W~~hr 97 (363)
..+.+++.|+ .+|+|+|-+|-+..+. ++-+|. ||...|
T Consensus 12 ~I~~~A~~LK~~~ki~~P~W~~~vKTg~~kE-~~P~~~-DW~Y~R 54 (150)
T PRK09333 12 LIERLAEYLKNVDEIKPPEWAAFVKTGVHKE-RPPEQE-DWWYVR 54 (150)
T ss_pred HHHHHHHHHHhcCCcCCCcchhhhccccccc-CCCCCC-chHHHH
Confidence 3455555555 3799999999977774 455664 588553
No 17
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=21.98 E-value=3.3e+02 Score=23.61 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=14.1
Q ss_pred hhhhhhhhcCCCCchh
Q 017987 295 GIGVCEQLMGIPIPLS 310 (363)
Q Consensus 295 ~~G~cERI~~TPiP~~ 310 (363)
..|-.||++.||+|..
T Consensus 17 ~~G~~~~l~~tP~~~~ 32 (152)
T TIGR01248 17 EIGLLSRLWVLPIHRA 32 (152)
T ss_pred HhHHHHHHHhCCCChH
Confidence 5699999999999966
Done!