Query 017987
Match_columns 363
No_of_seqs 183 out of 698
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:06:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_T 40S ribosomal protein S 34.7 12 0.0004 32.1 1.0 38 59-97 15-57 (144)
2 4gof_A Small glutamine-rich te 32.1 89 0.0031 22.0 5.1 38 261-298 6-43 (52)
3 2yka_B ORF57 protein, 52 kDa i 30.9 15 0.00052 22.0 0.0 14 69-82 8-21 (26)
4 4asv_A Small glutamine-rich te 22.5 1.4E+02 0.0048 23.5 5.1 38 261-298 23-60 (92)
5 3vea_B MATP, macrodomain TER p 22.0 1.3E+02 0.0044 25.5 5.1 49 223-272 14-62 (151)
6 2lxb_A Small glutamine-rich te 21.7 1.6E+02 0.0054 22.2 5.1 38 261-298 11-48 (74)
7 3iz6_S 40S ribosomal protein S 20.4 27 0.00093 29.8 0.7 27 69-97 33-59 (146)
8 2zt9_E Cytochrome B6-F complex 15.3 75 0.0026 20.1 1.6 14 160-173 14-27 (31)
9 1hji_B NUN-protein; bacterioph 14.4 1.8E+02 0.0063 17.1 3.0 20 211-230 6-25 (26)
10 1ckk_B Camkk, protein (RAT Ca2 14.3 72 0.0025 19.4 1.3 24 67-90 2-25 (26)
No 1
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=34.70 E-value=12 Score=32.05 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=27.6
Q ss_pred hhHHHHHHh-----hCCCchhhhhhhhccccccCCChhhHHhhh
Q 017987 59 TLTLISVLR-----AIPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (363)
Q Consensus 59 ~~~~~~~~~-----~~~~~~d~~~e~~~~~rr~~y~~~~W~~hr 97 (363)
.+++.+.|+ .+|+|+|-+|-+..+ -++-||.|+|..-|
T Consensus 15 I~~~A~~LK~~gki~~P~W~d~vKTg~~k-El~P~d~D~W~Y~R 57 (144)
T 3u5c_T 15 INAYASFLQRQGKLEVPGYVDIVKTSSGN-EMPPQDAEGWFYKR 57 (144)
T ss_dssp HHHHHHHHHHHCCCCCTTTTTSCCSCTTC-SSCCSSCSSSHHHH
T ss_pred HHHHHHHHHHcCCCCCCchHhHhhccccc-cCCCCCCcchHHHH
Confidence 445555554 379999999997766 56667887798664
No 2
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=32.10 E-value=89 Score=21.98 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHhhhhh
Q 017987 261 PRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGV 298 (363)
Q Consensus 261 P~~il~~l~~~l~~~~l~~~~~~~l~~~l~~l~d~~G~ 298 (363)
...|++.+++.+..|.+++...-.|+-.++++.+++|-
T Consensus 6 a~sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 6 AYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 45688899999999999999999999999999998874
No 3
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=30.87 E-value=15 Score=21.96 Aligned_cols=14 Identities=43% Similarity=0.850 Sum_probs=11.6
Q ss_pred CCCchhhhhhhhcc
Q 017987 69 IPDWADRVKERGVK 82 (363)
Q Consensus 69 ~~~~~d~~~e~~~~ 82 (363)
-|.|+|.+.|...+
T Consensus 8 r~nWs~RV~E~~~~ 21 (26)
T 2yka_B 8 KTSWADRVREAAAQ 21 (26)
Confidence 48999999997655
No 4
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=22.48 E-value=1.4e+02 Score=23.46 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHhhhhh
Q 017987 261 PRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGV 298 (363)
Q Consensus 261 P~~il~~l~~~l~~~~l~~~~~~~l~~~l~~l~d~~G~ 298 (363)
...|++.+++.++.+.+++.....|+-.++++.+++|-
T Consensus 23 A~sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~V 60 (92)
T 4asv_A 23 AALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 60 (92)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 45789999999999999999999999999999998874
No 5
>3vea_B MATP, macrodomain TER protein; macrodomains, chromosome, DNA condensation; 2.55A {Yersinia pestis} PDB: 3veb_B 4d8j_B
Probab=21.99 E-value=1.3e+02 Score=25.51 Aligned_cols=49 Identities=12% Similarity=0.284 Sum_probs=31.5
Q ss_pred HHHHHHHhcccCCCCCcchhhhcCCHHHHHHHhcCCCcHHHHHHHHHHHH
Q 017987 223 AFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSL 272 (363)
Q Consensus 223 Af~~aLk~hLR~~~d~~~eL~~lL~~~e~~~l~~a~n~P~~il~~l~~~l 272 (363)
-|.|.+|.|=- ++.+..-.+.-+.++-++.|...+|.|..|+.+|.+.+
T Consensus 14 KW~YLvkK~re-GE~ITry~e~S~a~~aV~~L~~le~~P~~v~~WI~~hm 62 (151)
T 3vea_B 14 KWAYLVKKHRE-GEAITRHIENSAAQDAVEQLMKLENEPVKVQEWIDAHM 62 (151)
T ss_dssp HHHHHHHHHHT-TCCCBSCSSHHHHHHHHHHTTTCTTCHHHHHHHHHHHB
T ss_pred hHHHHHHHhhc-cCcchHHHHhhHHHHHHHHHHHhccChHHHHHHHHHhc
Confidence 45566887744 44443333333334556778889999999999887643
No 6
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=21.70 E-value=1.6e+02 Score=22.19 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHhhhhh
Q 017987 261 PRCIIEFISQSLQLLNLEATKQNMLESKISCFHEGIGV 298 (363)
Q Consensus 261 P~~il~~l~~~l~~~~l~~~~~~~l~~~l~~l~d~~G~ 298 (363)
...|++.+++.+..+.+++.....|+-.++++.++++-
T Consensus 11 a~sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v 48 (74)
T 2lxb_A 11 AALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 48 (74)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 45788899999999999999999999999999998874
No 7
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.40 E-value=27 Score=29.84 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=20.4
Q ss_pred CCCchhhhhhhhccccccCCChhhHHhhh
Q 017987 69 IPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (363)
Q Consensus 69 ~~~~~d~~~e~~~~~rr~~y~~~~W~~hr 97 (363)
+|+|+|-+|-+..+ -++-||. ||..-|
T Consensus 33 ~P~W~d~vKTg~~K-El~P~d~-DW~Y~R 59 (146)
T 3iz6_S 33 LPEWVDIVKTARFK-ELPPYDP-DWYYTR 59 (146)
T ss_dssp CTTTGGGCCSSSSC-SSSTHHH-HTHHHH
T ss_pred CCchHHHhhccccc-cCCCCCC-chHHHH
Confidence 79999999997777 4555666 588554
No 8
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=15.31 E-value=75 Score=20.11 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHhcc
Q 017987 160 LTAPALALLLVFRT 173 (363)
Q Consensus 160 llg~aLsLLLvFRt 173 (363)
.+|.++|+++++|.
T Consensus 14 ~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 14 FTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999984
No 9
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=14.41 E-value=1.8e+02 Score=17.09 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 017987 211 ECIKDSLLRYIMAFPVALKG 230 (363)
Q Consensus 211 ~~~~~~l~r~~vAf~~aLk~ 230 (363)
..+++++.||---.+||||.
T Consensus 6 srdrrriarwekriayalkn 25 (26)
T 1hji_B 6 SRDRRRIARWEKRIAYALKN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHhc
Confidence 46788899998888888874
No 10
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=14.31 E-value=72 Score=19.39 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=19.3
Q ss_pred hhCCCchhhhhhhhccccccCCCh
Q 017987 67 RAIPDWADRVKERGVKQKRTLYSH 90 (363)
Q Consensus 67 ~~~~~~~d~~~e~~~~~rr~~y~~ 90 (363)
+.+|.|+--+--.+|-.+++++++
T Consensus 2 k~IP~l~Tvilvk~Mlr~~sf~nP 25 (26)
T 1ckk_B 2 KLIPSWTTVILVKSMLRKRSFGNP 25 (26)
T ss_dssp CCSCCHHHHHHHHHHCSSSCCCCC
T ss_pred ccccchhHHHHHHHHhhcccccCC
Confidence 458888888888888888888875
Done!