Query 017987
Match_columns 363
No_of_seqs 183 out of 698
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 08:06:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017987.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017987hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qjta_ a.39.1.6 (A:) Eps15 {M 28.3 50 0.0036 23.6 5.6 68 243-310 25-95 (99)
2 d2v7fa1 a.4.5.84 (A:2-150) Rib 17.2 17 0.0012 29.2 0.6 37 59-97 12-53 (149)
3 d2axth1 f.23.33.1 (H:2-65) Pho 15.9 77 0.0056 21.5 3.8 27 335-361 23-49 (64)
4 d1kqfb2 f.23.22.1 (B:246-290) 11.9 86 0.0063 19.8 2.9 30 113-142 6-35 (45)
5 d1jb0i_ f.23.17.1 (I:) Subunit 11.8 59 0.0043 19.7 1.9 27 325-353 9-35 (38)
6 d1u00a1 a.8.4.1 (A:504-615) Ch 7.2 2.4E+02 0.017 20.2 4.5 40 258-297 30-71 (112)
7 d1dkza1 a.8.4.1 (A:507-603) Dn 6.9 2.6E+02 0.019 19.4 4.4 42 257-298 29-72 (97)
8 d1ng7a_ a.178.1.1 (A:) Soluble 6.5 77 0.0056 21.2 1.0 28 40-70 3-30 (60)
9 d2ifxa1 d.58.4.19 (A:1-108) Hy 6.5 92 0.0067 22.5 1.5 19 171-189 69-89 (108)
10 d1zkea1 a.30.6.1 (A:1-79) Hypo 6.5 2.1E+02 0.015 19.7 3.4 30 276-305 46-75 (79)
No 1
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.31 E-value=50 Score=23.60 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=47.5
Q ss_pred hhcCCHHHHHHHhcCCCcHHHHHHHHHHHHHc---ccCChHHHHHHHHHHHHHHhhhhhhhhhcCCCCchh
Q 017987 243 QDLLDADDLAIVLDSKHRPRCIIEFISQSLQL---LNLEATKQNMLESKISCFHEGIGVCEQLMGIPIPLS 310 (363)
Q Consensus 243 ~~lL~~~e~~~l~~a~n~P~~il~~l~~~l~~---~~l~~~~~~~l~~~l~~l~d~~G~cERI~~TPiP~~ 310 (363)
.+.++.+|+..+....+.|...+..|-+.... |.++-.+......-+........--..+..+++|.+
T Consensus 25 ~G~i~~~e~~~~l~~s~L~~~~L~~i~~~~D~d~dG~L~~~EF~~am~Li~~~q~g~~l~~~~l~~~~p~P 95 (99)
T d1qjta_ 25 TGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVACAQNGLEVSLSSLSLAVPPP 95 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHHHHTTTCCSSGGGCSSCCCCC
T ss_pred CCcccHHHHHHHHHHcCCcHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHcCCCCCccccccCCCCC
Confidence 45677788888887788999988888877753 688887776665555554444434456777777754
No 2
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=17.19 E-value=17 Score=29.23 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=21.3
Q ss_pred hhHHHHHHh-----hCCCchhhhhhhhccccccCCChhhHHhhh
Q 017987 59 TLTLISVLR-----AIPDWADRVKERGVKQKRTLYSHEKWVEHR 97 (363)
Q Consensus 59 ~~~~~~~~~-----~~~~~~d~~~e~~~~~rr~~y~~~~W~~hr 97 (363)
.+++.+.|. .+|+|+|-+|-+.++.+-| ++ +||...|
T Consensus 12 I~~lA~~LK~~~ki~~P~W~~~vKTg~~kE~~P-~~-~DW~y~R 53 (149)
T d2v7fa1 12 VERVAQRLKEIPEIKPPEWAPFVKTGRHKERLP-EQ-EDWWYYR 53 (149)
T ss_dssp HHHHHHHHTTCTTCCCCSCGGGCCC------CH-HH-HTHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcchhhhcccccccCCC-CC-CchHHHH
Confidence 345555554 3799999999988876555 55 6788654
No 3
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.86 E-value=77 Score=21.46 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=19.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcC
Q 017987 335 HWIVVPATFISAASLFCIEEFVLRGWC 361 (363)
Q Consensus 335 gW~tip~~~lva~~llGIeeIg~eiE~ 361 (363)
||.|-|++.+....|.-.--|=-||-|
T Consensus 23 GWGTTplMgv~m~Lf~vfl~iiLeiYN 49 (64)
T d2axth1 23 GWGTTPLMAVFMGLFLVFLLIILEIYN 49 (64)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999988777666666555555543
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=11.94 E-value=86 Score=19.85 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=23.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcccccc
Q 017987 113 RVILSLIPPVIAFTMVAVVIASYNSALDSH 142 (363)
Q Consensus 113 sVl~~i~~~vl~~~~~a~~V~~l~~~~~~~ 142 (363)
..++.+++|+..++..+++++.+.+++..|
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv~vG 35 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYIGIG 35 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhheeC
Confidence 456778999999999888887776665444
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=11.76 E-value=59 Score=19.72 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=18.0
Q ss_pred HhhhHhhhccCcchHHHHHHHHHHHHHHH
Q 017987 325 TLPIILWDDCHWIVVPATFISAASLFCIE 353 (363)
Q Consensus 325 ~LPF~Lv~~~gW~tip~~~lva~~llGIe 353 (363)
.||..+++-.+|..+.++ .+.+|+-||
T Consensus 9 yLPwI~iPvv~wl~p~vv--MglLFiyIE 35 (38)
T d1jb0i_ 9 FLPWIFIPVVCWLMPTVV--MGLLFLYIE 35 (38)
T ss_dssp THHHHHHHHHHTHHHHHH--HHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHH--HHHHheeee
Confidence 478888888888776543 455555555
No 6
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=7.20 E-value=2.4e+02 Score=20.20 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=20.0
Q ss_pred CCcHHHHHHHHHHHHHc--ccCChHHHHHHHHHHHHHHhhhh
Q 017987 258 KHRPRCIIEFISQSLQL--LNLEATKQNMLESKISCFHEGIG 297 (363)
Q Consensus 258 ~n~P~~il~~l~~~l~~--~~l~~~~~~~l~~~l~~l~d~~G 297 (363)
.|....++..+.+.+.+ ..++......++..+..+-..+.
T Consensus 30 ~n~ae~~i~~~e~~L~e~~~~L~~~e~~~i~~~i~~l~~~l~ 71 (112)
T d1u00a1 30 KVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVAQ 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 34444455555554443 24555555555555555554444
No 7
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=6.91 E-value=2.6e+02 Score=19.37 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHHHHHHc--ccCChHHHHHHHHHHHHHHhhhhh
Q 017987 257 SKHRPRCIIEFISQSLQL--LNLEATKQNMLESKISCFHEGIGV 298 (363)
Q Consensus 257 a~n~P~~il~~l~~~l~~--~~l~~~~~~~l~~~l~~l~d~~G~ 298 (363)
+.|....++..+.+.+.. ..++......+++.+..+-+++.+
T Consensus 29 ~rn~ae~~i~~~e~~l~e~~~~l~~~~k~~i~~~i~~l~~~l~~ 72 (97)
T d1dkza1 29 TRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKG 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhc
Confidence 445555666666666654 357777777788877777666654
No 8
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=6.54 E-value=77 Score=21.25 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=18.9
Q ss_pred CCCcCcccccccCCCCCCchhHHHHHHhhCC
Q 017987 40 PLTFKTLSCLESQSQSETKTLTLISVLRAIP 70 (363)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (363)
+|+|++|.+-- ..++. |+....||++|-
T Consensus 3 Pp~yk~l~I~v--~~tPp-P~aI~DLLkSVD 30 (60)
T d1ng7a_ 3 PLQYKDLKIDI--KTSPP-PECINDLLQAVD 30 (60)
T ss_dssp SSCCCCCSCCC--SCCCS-STTTHHHHHHHC
T ss_pred CCcccceEeee--CCCCC-ChHHHHHHHhcC
Confidence 45788875532 23333 778889999997
No 9
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503 {Ralstonia eutropha [TaxId: 106590]}
Probab=6.51 E-value=92 Score=22.49 Aligned_cols=19 Identities=32% Similarity=0.850 Sum_probs=15.5
Q ss_pred hcchhHHHHHHH--HHHHHHH
Q 017987 171 FRTEASYSRFVD--GKKAWTQ 189 (363)
Q Consensus 171 FRtNsAY~RwwE--aRk~WG~ 189 (363)
|.+..+|++|-+ -||+|=.
T Consensus 69 f~~e~~y~~ym~sdirkawfe 89 (108)
T d2ifxa1 69 FKDDAAYATYMASDIRKAWFE 89 (108)
T ss_dssp ESSHHHHHHHHHCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHH
Confidence 788999999986 5888843
No 10
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=6.45 E-value=2.1e+02 Score=19.72 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=25.2
Q ss_pred cCChHHHHHHHHHHHHHHhhhhhhhhhcCC
Q 017987 276 NLEATKQNMLESKISCFHEGIGVCEQLMGI 305 (363)
Q Consensus 276 ~l~~~~~~~l~~~l~~l~d~~G~cERI~~T 305 (363)
+++.....++++.+..|-+++...-+|++-
T Consensus 46 ~l~~~~l~qid~ev~kLK~~IdaLNKiKke 75 (79)
T d1zkea1 46 GVNEAFFTQLSEEVERLKELINALNKIKKG 75 (79)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999998888888753
Done!