BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017988
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 10 DIHTYLREMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 68
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 69 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVL 128
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PSLI
Sbjct: 129 KVLAFDLAAPTVNQFLTQYFLHLQPAN----CKVESLAMFLGELSLIDADPYLKYLPSLI 184
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 185 AGAAFHLALYTV--TGQSWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKY 242
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 243 KHSKYHSVS 251
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 7 DIHTYLREMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 65
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 66 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVL 125
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PSLI
Sbjct: 126 KVLAFDLAAPTVNQFLTQYFLHLQPAN----CKVESLAMFLGELSLIDADPYLKYLPSLI 181
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 182 AGAAFHLALYTV--TGQSWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKY 239
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 240 KHSKYHSVS 248
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 7 DIHTYLREMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 65
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 66 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVL 125
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PSLI
Sbjct: 126 KVLAFDLAAPTVNQFLTQYFLHLQPAN----CKVESLAMFLGELSLIDADPYLKYLPSLI 181
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 182 AGAAFHLALYTV--TGQSWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKY 239
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 240 KHSKYHSVS 248
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 194 bits (494), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 11 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 69
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 70 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 129
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 130 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 185
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
AA+A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 186 AAAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 243
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 244 KNSKYHGVS 252
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 14 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 72
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 73 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 132
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 133 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 188
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 189 AGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 246
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 247 KNSKYHGVS 255
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 11 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 69
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 70 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 129
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 130 KVLAFDLAAPTINQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 185
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
AA+A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 186 AAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 244 KNSKYHGVS 252
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 11 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 69
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 70 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 129
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 130 KVLAFDLAAPTINQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 185
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
AA+A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 186 AAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 244 KNSKYHGVS 252
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 11 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 69
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 70 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 129
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 130 KVLAFDLAAPTINQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 185
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
AA+A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 186 AAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 244 KNSKYHGVS 252
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 11 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 69
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 70 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 129
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 130 KVLAFDLAAPTINQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 185
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
AA+A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 186 AAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 244 KNSKYHGVS 252
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 10 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 68
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 69 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 128
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 129 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 184
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 185 AGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 242
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 243 KNSKYHGVS 251
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 11 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 69
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 70 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 129
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 130 KVLAFDLAAPTINQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 185
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
AA+A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 186 AAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 244 KNSKYHGVS 252
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/249 (44%), Positives = 154/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 11 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 69
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 70 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 129
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 130 KVLAFDLAAPTINQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 185
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
AA+A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 186 AAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIREKY 243
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 244 KNSKYHGVS 252
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 9 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 67
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 68 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 127
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 128 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 183
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 184 AGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 241
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 242 KNSKYHGVS 250
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 8 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 66
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 67 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 126
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 127 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 182
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 183 AGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 240
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 241 KNSKYHGVS 249
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 7 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 65
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 66 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 125
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 126 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 181
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 182 AGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 239
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 240 KNSKYHGVS 248
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 9 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 67
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 68 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 127
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 128 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 183
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 184 AGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 241
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 242 KNSKYHGVS 250
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 5 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 63
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 64 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 123
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 124 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 179
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 180 AGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 237
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 238 KNSKYHGVS 246
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 7 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 65
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 66 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 125
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 126 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 181
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
A +A LA Y + + W +L T Y L C+ DLH+ Y + +IREKY
Sbjct: 182 AGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKY 239
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 240 KNSKYHGVS 248
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 11 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 69
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 70 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 129
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 130 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 185
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
AA+A LA Y + + W +L T Y C+ DLH+ Y + +IREKY
Sbjct: 186 AAAAFHLALYTV--TGQSWPESLIRKTGYTLETSKPCMLDLHQTYLKAPQHAQQSIREKY 243
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 244 KNSKYHGVS 252
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 191 bits (485), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 98 DIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYI 157
DI+ +LR EVK +P +M+ Q DI SMRAIL+DWLVEV EEY+L +TL+L VNYI
Sbjct: 11 DIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYI 69
Query: 158 DRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSIL 217
DR+LS + R +LQL+G A M++A+K+EEI P+V EF +ITD+TY K++VL ME +L
Sbjct: 70 DRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVL 129
Query: 218 NYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYS-MLCHAPSLI 276
L F++ APT FL ++ Q N ++E LA ++ ELSL+D L + PS+I
Sbjct: 130 KVLTFDLAAPTVNQFLTQYFLHQQPAN----CKVESLAMFLGELSLIDADPYLKYLPSVI 185
Query: 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAIREKY 336
AA+A LA Y + + W +L T Y L + DLH+ Y + +IREKY
Sbjct: 186 AAAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPMLLDLHQTYLKAPQHAQQSIREKY 243
Query: 337 SLHKYKCVA 345
KY V+
Sbjct: 244 KNSKYHGVS 252
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 150/259 (57%), Gaps = 15/259 (5%)
Query: 91 LCATFACDIYKHLRASEVKK--RPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPD 148
L + + DIY +LR E + RP ++ +++ +MRAILIDWLV+V ++RL+ +
Sbjct: 2 LSSEYVKDIYAYLRQLEAAQAVRPKY----LLGREVTGNMRAILIDWLVQVQMKFRLLQE 57
Query: 149 TLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEE 208
T+Y+TV+ IDR++ N + ++ LQL+GV M IA+KYEE+ P++ +F F+TDNTY K +
Sbjct: 58 TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQ 117
Query: 209 VLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSM 268
+ +ME IL L F + P FLRR A I EV Q LA Y+ EL++LDY M
Sbjct: 118 IRQMEMKILRALNFGLGRPLPLHFLRR----ASKIGEVDVEQ-HTLAKYLMELTMLDYDM 172
Query: 269 LCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHR--LYCNSQS 326
+ PS IAA A LA IL + W TLQHY Y L+ ++ L + + N
Sbjct: 173 VHFPPSQIAAGAFSLALKILDNGE--WTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGL 230
Query: 327 STLPAIREKYSLHKYKCVA 345
+ ++ KY+ K+ ++
Sbjct: 231 TKHMTVKNKYATSKHAKIS 249
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 171 bits (432), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 15/258 (5%)
Query: 92 CATFACDIYKHLRASEVKK--RPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDT 149
C+ + DIY +LR E ++ RP ++ +++ +MRAILIDWLV+V ++RL+ +T
Sbjct: 1 CSEYVKDIYAYLRQLEEEQAVRPKY----LLGREVTGNMRAILIDWLVQVQMKFRLLQET 56
Query: 150 LYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEV 209
+Y+TV+ IDR++ N + ++ LQL+GV M IA+KYEE+ P++ +F F+TDNTY K ++
Sbjct: 57 MYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQI 116
Query: 210 LEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSML 269
+ME IL L F + P FLRR A I EV Q LA Y+ EL++LDY M+
Sbjct: 117 RQMEMKILRALNFGLGRPLPLHFLRR----ASKIGEVDVEQ-HTLAKYLMELTMLDYDMV 171
Query: 270 CHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHR--LYCNSQSS 327
PS IAA A LA IL + W TLQHY Y L+ ++ L + + N +
Sbjct: 172 HFPPSQIAAGAFCLALKILDNGE--WTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLT 229
Query: 328 TLPAIREKYSLHKYKCVA 345
++ KY+ K+ ++
Sbjct: 230 KHMTVKNKYATSKHAKIS 247
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 1/173 (0%)
Query: 112 PSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRL 171
P + + +Q++I MR +L W++EV EE R + L +NY+DRYLS P + +L
Sbjct: 54 PRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQL 113
Query: 172 QLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKC 231
QLLG CM++A+K E +E+ C TD+ ++ + E +L LK+++ A A
Sbjct: 114 QLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHD 173
Query: 232 FLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLA 284
FL F+ + ++ A L DY+ + PS+IA +I A
Sbjct: 174 FL-AFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAA 225
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 124 INASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNP-MSRQRLQLLGVACMMIA 182
+ MRAIL+DWL+EV E Y+L +T YL ++ DRY++ + + LQL+G++ + IA
Sbjct: 45 LQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIA 104
Query: 183 AKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAA-- 240
AK EEI P++ +F ++TD +E+L ME I+ LK+ ++ T +L +++ A
Sbjct: 105 AKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYL 164
Query: 241 QGINEV--PS--MQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWN 296
++EV P Q+ + +L +LD L ++AASA++ +
Sbjct: 165 NDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS---------S 215
Query: 297 STLQHYTLYQPSDLMECVK 315
+Q + YQ D+ CVK
Sbjct: 216 ELMQKVSGYQWCDIENCVK 234
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 77/126 (61%)
Query: 112 PSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRL 171
PS + + +QK++ SMR I+ W++EV EE + + L +NY+DR+LS P+ + RL
Sbjct: 26 PSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRL 85
Query: 172 QLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKC 231
QLLG CM +A+K +E E+ C TDN+ EE+L+ME ++N LK+ + A T
Sbjct: 86 QLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHD 145
Query: 232 FLRRFV 237
F+ F+
Sbjct: 146 FIEHFL 151
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 77/126 (61%)
Query: 112 PSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRL 171
PS + + +QK++ SMR I+ W++EV EE + + L +NY+DR+LS P+ + RL
Sbjct: 40 PSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRL 99
Query: 172 QLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKC 231
QLLG CM +A+K +E E+ C TDN+ EE+L+ME ++N LK+ + A T
Sbjct: 100 QLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHD 159
Query: 232 FLRRFV 237
F+ F+
Sbjct: 160 FIEHFL 165
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 3/199 (1%)
Query: 120 IQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACM 179
IQ ++ R IL+ W+ + E + L L+V+ +DRYL +++ LQ +G AC+
Sbjct: 43 IQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACV 102
Query: 180 MIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRA 239
+I +K + V + +++ + + E++ E IL LK++ A A FL A
Sbjct: 103 LIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNA 162
Query: 240 AQGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWNSTL 299
+ I E QL A+ +L+ ++ +P LI A + RPW L
Sbjct: 163 LK-IPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYL 221
Query: 300 QHYT--LYQPSDLMECVKD 316
+ + L ++ + VKD
Sbjct: 222 EDLSSILNFSTNTVRTVKD 240
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 4/220 (1%)
Query: 99 IYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYID 158
+ +L+ E+ T EI Q ++ R IL+ W+ + E + L L+V+ +D
Sbjct: 2 VLNNLKLRELLLPKFTSLWEI-QTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILD 60
Query: 159 RYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILN 218
RYL +++ LQ +G AC++I +K + V + +++ + + E++ E IL
Sbjct: 61 RYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILE 120
Query: 219 YLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAA 278
LK++ A A FL A + I E QL A+ +L+ ++ +P LI A
Sbjct: 121 ALKWDTEAVLATDFLIPLCNALK-IPEDLWPQLYEAASTTICKALIQPNIALLSPGLICA 179
Query: 279 SAIFLAKYILLPAKRPWNSTLQHYT--LYQPSDLMECVKD 316
+ RPW L+ + L ++ + VKD
Sbjct: 180 GGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKD 219
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 121 QKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMM 180
Q+ + + MR +L W+ V +EY L P+ + L +N +DR L +S++ Q G AC++
Sbjct: 43 QQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLL 102
Query: 181 IAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTA----KCFLRRF 236
+A+K + C+ +++ ++E+++ E +L L + A A L +
Sbjct: 103 VASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKL 162
Query: 237 VRAAQGIN 244
V +Q ++
Sbjct: 163 VGGSQHLD 170
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 71/172 (41%), Gaps = 11/172 (6%)
Query: 136 LVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEI---CAPQ 192
+ +V L DTL + Y R+ + + + G C+ +A K EE C
Sbjct: 48 IFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDI 107
Query: 193 VEEFCFITDNTYF-------KEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINE 245
++ + ++ F KEEV+ +E +L +KF++ FL ++ + +G
Sbjct: 108 IKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKN 167
Query: 246 VPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWNS 297
++ +V + SL L P +IA + ++LA + + W S
Sbjct: 168 KIQKLVQMAWTFVND-SLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTS 218
>pdb|1KQ5|A Chain A, C-Terminal Domain Of Cyclase Associated Protein With Pro
505 Replaced By Ser (P505s)
pdb|1KQ5|B Chain B, C-Terminal Domain Of Cyclase Associated Protein With Pro
505 Replaced By Ser (P505s)
Length = 159
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 3 VSPSKSDANSVSMDESMSVCDSFKSPEVEYLDNNDVPPLDSIDRKSFRNLYISDHTERTE 62
+S S++++ SV +D S+S D KS + N+ +P + SID+ N+Y+S + TE
Sbjct: 53 ISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQI-SIDKSDGGNIYLSKESLNTE 111
>pdb|1K4Z|A Chain A, C-Terminal Domain Of Cyclase Associated Protein
pdb|1K4Z|B Chain B, C-Terminal Domain Of Cyclase Associated Protein
Length = 159
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 3 VSPSKSDANSVSMDESMSVCDSFKSPEVEYLDNNDVPPLDSIDRKSFRNLYISDHTERTE 62
+S S++++ SV +D S+S D KS + N+ +P + SID+ N+Y+S + TE
Sbjct: 53 ISLSETESCSVVLDSSISGMDVIKSNKFGIQVNHSLPQI-SIDKSDGGNIYLSKESLNTE 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,637,028
Number of Sequences: 62578
Number of extensions: 352564
Number of successful extensions: 729
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 643
Number of HSP's gapped (non-prelim): 34
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)