Query 017988
Match_columns 362
No_of_seqs 283 out of 1743
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 08:07:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 2.2E-57 7.6E-62 425.9 27.0 256 92-354 3-259 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 6.4E-56 2.2E-60 418.0 22.3 253 90-351 1-255 (269)
3 1g3n_C V-cyclin; cyclin-depend 100.0 3.4E-52 1.2E-56 390.0 28.0 245 82-330 7-255 (257)
4 2f2c_A Cyclin homolog, V-cycli 100.0 1.9E-51 6.4E-56 384.4 25.8 240 82-325 8-250 (254)
5 1f5q_B Gamma herpesvirus cycli 100.0 6.8E-51 2.3E-55 379.7 17.6 232 81-325 9-244 (252)
6 3g33_B CCND3 protein; Ser/Thr 100.0 9E-50 3.1E-54 382.3 25.3 237 85-325 29-269 (306)
7 1w98_B Cyclin E, G1/S-specific 100.0 2.1E-49 7.2E-54 376.0 25.2 253 84-347 6-268 (283)
8 2w96_A G1/S-specific cyclin-D1 100.0 5.8E-48 2E-52 364.0 24.2 241 82-326 13-260 (271)
9 2ivx_A Cyclin-T2; transcriptio 100.0 6.6E-37 2.3E-41 286.1 19.2 213 116-337 18-253 (257)
10 2i53_A Cyclin K; cell cycle, t 100.0 4.7E-37 1.6E-41 287.1 16.1 212 113-326 25-254 (258)
11 3rgf_B Cyclin-C; protein kinas 100.0 3.5E-36 1.2E-40 285.5 18.4 208 124-340 38-263 (285)
12 2pk2_A Cyclin-T1, protein TAT; 100.0 3.9E-35 1.3E-39 286.3 12.4 211 116-335 25-258 (358)
13 1zp2_A RNA polymerase II holoe 100.0 2.4E-34 8.2E-39 265.5 15.0 188 129-325 28-222 (235)
14 1jkw_A Cyclin H; cell cycle, c 100.0 4.5E-33 1.5E-37 268.4 18.8 211 125-336 53-277 (323)
15 1c9b_A General transcription f 99.9 2.4E-26 8.1E-31 207.9 20.7 184 128-321 4-187 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 5.2E-22 1.8E-26 178.3 22.8 184 129-322 9-194 (200)
17 3k7a_M Transcription initiatio 99.7 1.7E-18 5.9E-23 168.0 6.2 183 129-321 126-320 (345)
18 4bbr_M Transcription initiatio 99.3 3.9E-12 1.3E-16 123.1 10.2 181 130-320 127-319 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.5 9.1E-07 3.1E-11 82.7 12.1 105 132-239 77-184 (293)
20 1ais_B TFB TFIIB, protein (tra 96.7 0.0087 3E-07 52.5 10.3 89 134-225 110-198 (200)
21 1c9b_A General transcription f 95.1 0.09 3.1E-06 46.2 9.2 86 133-221 103-188 (207)
22 2ivx_A Cyclin-T2; transcriptio 88.3 1.6 5.6E-05 39.3 8.5 87 134-220 148-238 (257)
23 1zp2_A RNA polymerase II holoe 87.6 3.5 0.00012 36.6 10.2 69 252-322 49-126 (235)
24 2i53_A Cyclin K; cell cycle, t 87.5 1.6 5.6E-05 39.2 8.0 88 134-221 153-250 (258)
25 4bbr_M Transcription initiatio 86.0 4 0.00014 38.7 10.1 89 227-322 127-215 (345)
26 3rgf_B Cyclin-C; protein kinas 85.7 2.8 9.6E-05 38.6 8.7 82 134-220 159-240 (285)
27 2f2c_A Cyclin homolog, V-cycli 84.2 4.4 0.00015 36.4 9.1 85 134-220 154-246 (254)
28 1g3n_C V-cyclin; cyclin-depend 82.6 5.3 0.00018 35.9 9.0 86 133-220 152-246 (257)
29 2pk2_A Cyclin-T1, protein TAT; 81.5 1.4 4.8E-05 42.2 4.8 87 134-220 155-245 (358)
30 2cch_B Cyclin A2, cyclin-A; co 80.8 4.1 0.00014 36.7 7.5 85 133-220 140-226 (260)
31 2b9r_A Human cyclin B1; cell c 79.2 11 0.00037 34.2 9.8 70 253-323 60-131 (269)
32 3k7a_M Transcription initiatio 77.9 1.4 4.9E-05 41.8 3.6 86 230-322 130-215 (345)
33 2w96_A G1/S-specific cyclin-D1 76.5 18 0.00061 32.6 10.5 68 254-322 80-149 (271)
34 1jkw_A Cyclin H; cell cycle, c 74.0 10 0.00036 35.4 8.4 89 133-221 168-260 (323)
35 3g33_B CCND3 protein; Ser/Thr 73.9 18 0.00063 33.4 10.0 67 255-322 95-163 (306)
36 3h4c_A Transcription factor TF 65.8 44 0.0015 29.3 9.7 87 132-222 15-104 (260)
37 1w98_B Cyclin E, G1/S-specific 63.3 35 0.0012 30.9 9.4 56 267-323 87-144 (283)
38 2pmi_B PHO85 cyclin PHO80, ami 61.3 37 0.0013 31.4 9.0 90 227-322 75-167 (293)
39 1f5q_B Gamma herpesvirus cycli 50.6 1.1E+02 0.0036 27.3 10.2 56 267-323 85-142 (252)
40 2p1m_A SKP1-like protein 1A; F 41.8 33 0.0011 28.4 4.9 39 171-210 111-149 (160)
41 2qdj_A Retinoblastoma-associat 40.8 68 0.0023 29.7 7.3 65 136-201 6-74 (304)
42 3m03_A ORC6, origin recognitio 39.0 67 0.0023 24.5 5.8 46 275-322 47-92 (95)
43 2ast_A S-phase kinase-associat 38.0 56 0.0019 26.8 5.8 56 143-210 92-150 (159)
44 3v7d_A Suppressor of kinetocho 31.6 88 0.003 26.1 6.0 55 144-210 100-157 (169)
45 3m03_A ORC6, origin recognitio 30.2 1.8E+02 0.0061 22.0 9.4 78 136-218 6-89 (95)
46 3o0g_D Cyclin-dependent kinase 27.5 1.7E+02 0.006 23.6 6.6 62 130-191 28-100 (149)
47 1fs1_B SKP1, cyclin A/CDK2-ass 25.8 98 0.0034 24.8 5.2 43 143-196 87-132 (141)
48 1unl_D Cyclin-dependent kinase 24.6 1.9E+02 0.0065 24.5 6.6 61 130-190 73-144 (208)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=2.2e-57 Score=425.86 Aligned_cols=256 Identities=43% Similarity=0.682 Sum_probs=243.3
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCcchHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhh
Q 017988 92 CATFACDIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRL 171 (362)
Q Consensus 92 ~~~y~~dI~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~l 171 (362)
|.+|++|||.+|+++|.++.|+++|+.. |++|++.||.++||||++++.+|+++++|+++||+|+|||+++.++++.++
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~l 81 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL 81 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhc-CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 6799999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHccCCCCchhHH
Q 017988 172 QLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQL 251 (362)
Q Consensus 172 qLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~~~~~~~~~~ 251 (362)
|++|+||||||||+||..+|++.++++++++.|++++|.+||+.||++|+|++++|||++|+.+|+..++... .++
T Consensus 82 qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~----~~~ 157 (260)
T 2cch_B 82 QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPAN----CKV 157 (260)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCC----HHH
T ss_pred hHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh----HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765432 256
Q ss_pred HHHHHHHHHHhhcccc-ccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhhCCChhhHHHHHHHHHHHHhcCCCCChh
Q 017988 252 ECLANYVTELSLLDYS-MLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLP 330 (362)
Q Consensus 252 ~~la~~l~elsL~d~~-~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t~~~~~~l~~c~~~L~~l~~~~~~~~~~ 330 (362)
..+|++++++++.++. +++|+||.||+|||++|+..++ .+.|...+.+++|++.+++.+|++.|.+++.+....+++
T Consensus 158 ~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~--~~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~ 235 (260)
T 2cch_B 158 ESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVT--GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ 235 (260)
T ss_dssp HHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHH--SCCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCC
T ss_pred HHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhC--CCcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchH
Confidence 7899999999999999 9999999999999999999984 478999999999999999999999999999888888899
Q ss_pred HHHHhhcCCcccccccccCCCCCC
Q 017988 331 AIREKYSLHKYKCVAKKYCPPSIP 354 (362)
Q Consensus 331 ~i~~KY~~~~~~~va~~~~p~~~~ 354 (362)
+|++||++++|++||.+.+|+.+|
T Consensus 236 ~i~~Ky~~~~~~~vs~~~~~~~~~ 259 (260)
T 2cch_B 236 SIREKYKNSKYHGVSLLNPPETLN 259 (260)
T ss_dssp HHHHHHTSGGGTTGGGSCCCSCCC
T ss_pred HHHHHHCcccccceeCCCCcccCC
Confidence 999999999999999999988776
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=6.4e-56 Score=417.95 Aligned_cols=253 Identities=36% Similarity=0.604 Sum_probs=231.5
Q ss_pred chhhhhHHHHHHHHHHHHhhcCCCcchHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcch
Q 017988 90 QLCATFACDIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQ 169 (362)
Q Consensus 90 ~~~~~y~~dI~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~ 169 (362)
|+|.+|++|||++|++.|.++.|+++|++. | +|++.||.++++||++++.+|+++++|+++|++|+|||+++..+++.
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~~~~~y~~~-q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~ 78 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEAAQAVRPKYLLG-R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK 78 (269)
T ss_dssp ------CCTTTTTHHHHHHTTCCCTTTTSS-S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCcccccC-C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHH
Confidence 589999999999999999999999999985 6 99999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHccCCCCchh
Q 017988 170 RLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSM 249 (362)
Q Consensus 170 ~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~~~~~~~~ 249 (362)
++|++|+||||||||+||..+|++.+|++++++.|++++|.+||+.||++|+|++++|||++||.+|+...+.+ .
T Consensus 79 ~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~-----~ 153 (269)
T 2b9r_A 79 MLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD-----V 153 (269)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC-----H
T ss_pred HhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC-----H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999765432 3
Q ss_pred HHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhhCCChhhHHHHHHHHHHHHhcCCC--C
Q 017988 250 QLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQS--S 327 (362)
Q Consensus 250 ~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t~~~~~~l~~c~~~L~~l~~~~~~--~ 327 (362)
.+..+|.+++++++.++.|++|+||.||+|||++|+.+++ ...|...+.+++||+.+++.+|++.|.+++..... .
T Consensus 154 ~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~--~~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~ 231 (269)
T 2b9r_A 154 EQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILD--NGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLT 231 (269)
T ss_dssp HHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHT--CCCSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5678899999999999999999999999999999999994 45899999999999999999999999998876543 5
Q ss_pred ChhHHHHhhcCCcccccccccCCC
Q 017988 328 TLPAIREKYSLHKYKCVAKKYCPP 351 (362)
Q Consensus 328 ~~~~i~~KY~~~~~~~va~~~~p~ 351 (362)
++++|++||++++|++||.+..+.
T Consensus 232 ~~~ai~~Ky~~~~~~~vs~~~~~~ 255 (269)
T 2b9r_A 232 KHMTVKNKYATSKHAKISTLPQLN 255 (269)
T ss_dssp SCCHHHHHTTSGGGTTGGGSSCCS
T ss_pred chHHHHHHhcchhhCcccCCCCCC
Confidence 789999999999999999886553
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3.4e-52 Score=390.03 Aligned_cols=245 Identities=20% Similarity=0.282 Sum_probs=217.3
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHHHHhhcCCCcchHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhc
Q 017988 82 VDDNYMDPQLCATFACDIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYL 161 (362)
Q Consensus 82 id~~~~dp~~~~~y~~dI~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfL 161 (362)
++.+..||++|.+ +||| +|++.|.++.|+++|+...|++|++.||.++||||++|+.+|++.++|+|+||+|+|||+
T Consensus 7 ~~~~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfl 83 (257)
T 1g3n_C 7 PPSGLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLL 83 (257)
T ss_dssp ---------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CccCCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 5677899999998 9999 999999999999999976799999999999999999999999999999999999999999
Q ss_pred cCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHc
Q 017988 162 SGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQ 241 (362)
Q Consensus 162 s~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~ 241 (362)
+++.+.+.++||+|+||||||||+||..+|.+.+|++++++.|++++|++||+.||++|+|++++|||++||++|++.++
T Consensus 84 s~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~ 163 (257)
T 1g3n_C 84 LIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLV 163 (257)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCchhHHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCC----CCCCcHHHHhhhCCChhhHHHHHHHH
Q 017988 242 GINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPA----KRPWNSTLQHYTLYQPSDLMECVKDL 317 (362)
Q Consensus 242 ~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~----~~~w~~~L~~~t~~~~~~l~~c~~~L 317 (362)
...+. ...+...+.+++++++.|+.|++|+||.||||||++|+..++.. .+.|...|.+++||+.++|.+|++.|
T Consensus 164 ~~~~~-~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i 242 (257)
T 1g3n_C 164 GGSQH-LDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQI 242 (257)
T ss_dssp CSSTT-HHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CChhH-HHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHH
Confidence 65432 12346789999999999999999999999999999999988521 25799999999999999999999999
Q ss_pred HHHHhcCCCCChh
Q 017988 318 HRLYCNSQSSTLP 330 (362)
Q Consensus 318 ~~l~~~~~~~~~~ 330 (362)
.+++.+.+...+.
T Consensus 243 ~~l~~~~~~~~l~ 255 (257)
T 1g3n_C 243 LTSVSDFDLRILD 255 (257)
T ss_dssp HHHHHHCCCCC--
T ss_pred HHHHHHCCHHhhc
Confidence 9999887666554
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.9e-51 Score=384.37 Aligned_cols=240 Identities=20% Similarity=0.287 Sum_probs=216.8
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHHHHhhcCCCcchHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhc
Q 017988 82 VDDNYMDPQLCATFACDIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYL 161 (362)
Q Consensus 82 id~~~~dp~~~~~y~~dI~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfL 161 (362)
++.+..||++|++ +|||+ |++.|.++.|+++|+...|+++++.||.++||||++++.+|++.++|+|+||+|+|||+
T Consensus 8 ~~~~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfl 84 (254)
T 2f2c_A 8 LNRAKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYL 84 (254)
T ss_dssp CCBCCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHT
T ss_pred CCCCCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 4567899999999 99999 99999999999999976799999999999999999999999999999999999999999
Q ss_pred cCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHc
Q 017988 162 SGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQ 241 (362)
Q Consensus 162 s~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~ 241 (362)
+++.+.+.++||+|+||||||||+||..+|.+.+|++++++.|++++|.+||+.||++|+|+++.|||++|+++|++.++
T Consensus 85 s~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~ 164 (254)
T 2f2c_A 85 CKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALK 164 (254)
T ss_dssp TTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTT
T ss_pred ccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cCCCCchhHHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCCCCCC---cHHHHhhhCCChhhHHHHHHHHH
Q 017988 242 GINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPW---NSTLQHYTLYQPSDLMECVKDLH 318 (362)
Q Consensus 242 ~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~w---~~~L~~~t~~~~~~l~~c~~~L~ 318 (362)
.+.+. ...+...+.+++++++.|+.|++|+||.|||||+++|+...++....| ...|.++|||+.++|.+|++.|.
T Consensus 165 ~~~~~-~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~ 243 (254)
T 2f2c_A 165 IPEDL-WPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVS 243 (254)
T ss_dssp CCGGG-HHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CChhh-HHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 54322 123467899999999999999999999999999999999863222246 88999999999999999999999
Q ss_pred HHHhcCC
Q 017988 319 RLYCNSQ 325 (362)
Q Consensus 319 ~l~~~~~ 325 (362)
+++.+..
T Consensus 244 ~~~~~~~ 250 (254)
T 2f2c_A 244 EAFSLYD 250 (254)
T ss_dssp HHHHTCC
T ss_pred HHHHhCC
Confidence 9886543
No 5
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.8e-51 Score=379.72 Aligned_cols=232 Identities=14% Similarity=0.224 Sum_probs=206.9
Q ss_pred cCCCCCCCcchhhhhHHHHHHHHHHHHhhcCCCcchHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhh
Q 017988 81 NVDDNYMDPQLCATFACDIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRY 160 (362)
Q Consensus 81 ~id~~~~dp~~~~~y~~dI~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRf 160 (362)
.++....||++|.+ +||++|+++|.++.| ...|++|++.||.++||||++|+.+|++.++|+|+||+|+|||
T Consensus 9 ~~~~~~~dp~l~~d---~i~~~l~~~E~~~~p-----~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRf 80 (252)
T 1f5q_B 9 FLDSSLLNEEDCRQ---MIYRSEREHDARMVG-----VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDEL 80 (252)
T ss_dssp SCSCTTCCHHHHHH---HHHHHHHHHHHHHSS-----SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred CCCcCcCCHHHhHH---HHHHHHHHHHHHhCc-----CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45678899999866 999999999999988 2358899999999999999999999999999999999999999
Q ss_pred ccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHH
Q 017988 161 LSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAA 240 (362)
Q Consensus 161 Ls~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~ 240 (362)
|+++.++++++||+|+|||+||||+||..||.+.++++++++.|++++|++||+.||++|+|+++.|||++||++|++.+
T Consensus 81 Ls~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~ 160 (252)
T 1f5q_B 81 FLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIM 160 (252)
T ss_dssp HHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCchhHHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCCCCCC----cHHHHhhhCCChhhHHHHHHH
Q 017988 241 QGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPW----NSTLQHYTLYQPSDLMECVKD 316 (362)
Q Consensus 241 ~~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~w----~~~L~~~t~~~~~~l~~c~~~ 316 (362)
+...+. ...+...+.++++++++|+.|+.|+||+|||||+.++ ++ ....| ...|.++|||+.+++.+|++.
T Consensus 161 ~~~~~~-~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~---l~-~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~ 235 (252)
T 1f5q_B 161 HAPRED-YLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLT---MN-QKYDYYENRIDGVCKSLYITKEELHQCCDL 235 (252)
T ss_dssp TCCHHH-HHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHH---HT-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcch-HHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHH---hc-cCCCchhhHHHHHHHHHCcCHHHHHHHHHH
Confidence 543221 1235678999999999999999999999999995444 32 23334 678899999999999999999
Q ss_pred HHHHHhcCC
Q 017988 317 LHRLYCNSQ 325 (362)
Q Consensus 317 L~~l~~~~~ 325 (362)
|.+++.+..
T Consensus 236 i~~~l~~~~ 244 (252)
T 1f5q_B 236 VDIAIVSFD 244 (252)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHhC
Confidence 999886543
No 6
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=9e-50 Score=382.33 Aligned_cols=237 Identities=27% Similarity=0.377 Sum_probs=211.1
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHhhcCCCcchHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCC
Q 017988 85 NYMDPQLCATFACDIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGN 164 (362)
Q Consensus 85 ~~~dp~~~~~y~~dI~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~ 164 (362)
...||+++ |.+|||++|+++|.++.|+++|++..|++|++.||.++|+||++|+.+|+++++|+++||+||||||+++
T Consensus 29 a~~dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~ 106 (306)
T 3g33_B 29 AGPDPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCV 106 (306)
T ss_dssp ----------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHC
T ss_pred cCCCCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcC
Confidence 46789887 8899999999999999999999987899999999999999999999999999999999999999999999
Q ss_pred cCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHccCC
Q 017988 165 PMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGIN 244 (362)
Q Consensus 165 ~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~~~ 244 (362)
.+.+.++||+|+||||||||+||..+|.+.+|++++++.|++++|++||+.||++|+|++++|||++||++|++.++...
T Consensus 107 ~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~ 186 (306)
T 3g33_B 107 PTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPR 186 (306)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCT
T ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred CCchhHHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCCCCC----CcHHHHhhhCCChhhHHHHHHHHHHH
Q 017988 245 EVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRP----WNSTLQHYTLYQPSDLMECVKDLHRL 320 (362)
Q Consensus 245 ~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~----w~~~L~~~t~~~~~~l~~c~~~L~~l 320 (362)
+. ...+...+.+++++++.++.|+.|+||+||||||++|+..++ .... |...|.++|||+.++|.+|++.|.++
T Consensus 187 ~~-~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~-~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 187 DR-QALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG-ACSMSGDELTELLAGITGTEVDCLRACQEQIEAA 264 (306)
T ss_dssp TT-HHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC----CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhc-CCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 32 223456789999999999999999999999999999999985 3333 46789999999999999999999999
Q ss_pred HhcCC
Q 017988 321 YCNSQ 325 (362)
Q Consensus 321 ~~~~~ 325 (362)
+.+..
T Consensus 265 ~~~~l 269 (306)
T 3g33_B 265 LRESL 269 (306)
T ss_dssp HHTC-
T ss_pred HHHHH
Confidence 98743
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.1e-49 Score=376.05 Aligned_cols=253 Identities=27% Similarity=0.396 Sum_probs=225.1
Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHhhcCCCcchHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccC
Q 017988 84 DNYMDPQLCATFACDIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSG 163 (362)
Q Consensus 84 ~~~~dp~~~~~y~~dI~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~ 163 (362)
....||++|.+|.+|||++|+++|.++.|+++|+.. |++|++.||.++++||++++.++++.++|+++||+|||||+++
T Consensus 6 ~~~~~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~-q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~ 84 (283)
T 1w98_B 6 RGSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMAT 84 (283)
T ss_dssp --CCSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhhcCHHHHHHHHHHHHHHhCCCchhhcc-CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999986 9999999999999999999999999999999999999999998
Q ss_pred -CcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHcc
Q 017988 164 -NPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQG 242 (362)
Q Consensus 164 -~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~ 242 (362)
..+.+.++||+|+||||||||+||..+|.+.++++++++.|++++|.+||+.||++|+|++++|||++||.+|+..++.
T Consensus 85 ~~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~ 164 (283)
T 1w98_B 85 QENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYL 164 (283)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCc------hhHHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhhCCChhhHHHHHHH
Q 017988 243 INEVP------SMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKD 316 (362)
Q Consensus 243 ~~~~~------~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t~~~~~~l~~c~~~ 316 (362)
..... .......+.+++++++.|+.|++|+||.||||||++|+ |...+.+++||+.++|.+|++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~---------~~~~l~~~tg~~~~~i~~c~~~ 235 (283)
T 1w98_B 165 NDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS---------SSELMQKVSGYQWCDIENCVKW 235 (283)
T ss_dssp CSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS---------CHHHHHHHSCCCHHHHHHHHHH
T ss_pred CchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH---------ChHHHHHHhCCCHHHHHHHHHH
Confidence 43211 11222347789999999999999999999999999973 6788999999999999999999
Q ss_pred HHHHHhcC---CCCChhHHHHhhcCCcccccccc
Q 017988 317 LHRLYCNS---QSSTLPAIREKYSLHKYKCVAKK 347 (362)
Q Consensus 317 L~~l~~~~---~~~~~~~i~~KY~~~~~~~va~~ 347 (362)
|..++..- ...++.. ++||+...++.|+..
T Consensus 236 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~ 268 (283)
T 1w98_B 236 MVPFAMVIRETGSSKLKH-FRGVADEDAHNIQTH 268 (283)
T ss_dssp HHHHHHHHHHHCCCCCCC-CTTSCGGGGGGBCCC
T ss_pred HHHHHHHHHhcChHhhcc-hhccCHHhccCcccC
Confidence 98876532 3344444 579999999998874
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=5.8e-48 Score=363.98 Aligned_cols=241 Identities=29% Similarity=0.464 Sum_probs=207.9
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHHHHhhcCCCcchHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhc
Q 017988 82 VDDNYMDPQLCATFACDIYKHLRASEVKKRPSTDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYL 161 (362)
Q Consensus 82 id~~~~dp~~~~~y~~dI~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfL 161 (362)
++.+..||+++ .+|||++|++.|.++.|+++|+...|++|++.||.++++||++++.+++++++|+++||+|+|||+
T Consensus 13 ~~~~~~dp~~~---~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl 89 (271)
T 2w96_A 13 IRRAYPDANLL---NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFL 89 (271)
T ss_dssp C--------------CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred cccCCCCCccc---HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhC
Confidence 45678899987 679999999999999999999987899999999999999999999999999999999999999999
Q ss_pred cCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHc
Q 017988 162 SGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQ 241 (362)
Q Consensus 162 s~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~ 241 (362)
++.++.+.++|++|+||||||||+||+.||+++++++++++.|++++|++||+.||++|+|++++|||++||.+|+..++
T Consensus 90 s~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~ 169 (271)
T 2w96_A 90 SLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMP 169 (271)
T ss_dssp TTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSC
T ss_pred CcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCCCCchhHHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhc---CCCCCC----cHHHHhhhCCChhhHHHHH
Q 017988 242 GINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILL---PAKRPW----NSTLQHYTLYQPSDLMECV 314 (362)
Q Consensus 242 ~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~---~~~~~w----~~~L~~~t~~~~~~l~~c~ 314 (362)
...+. ...+...+.+++++++.|+.|++|+||.||||||++|+..++ +..+.| ...|.+++|++.+++++|+
T Consensus 170 ~~~~~-~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~ 248 (271)
T 2w96_A 170 EAEEN-KQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQ 248 (271)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHH
T ss_pred CCchH-HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHH
Confidence 43221 112345688889999999999999999999999999998874 222334 4679999999999999999
Q ss_pred HHHHHHHhcCCC
Q 017988 315 KDLHRLYCNSQS 326 (362)
Q Consensus 315 ~~L~~l~~~~~~ 326 (362)
+.|.+++.....
T Consensus 249 ~~i~~l~~~~~~ 260 (271)
T 2w96_A 249 EQIEALLESSLR 260 (271)
T ss_dssp HHHHHHHTTTTT
T ss_pred HHHHHHHHHHHH
Confidence 999999876543
No 9
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=6.6e-37 Score=286.11 Aligned_cols=213 Identities=18% Similarity=0.213 Sum_probs=183.1
Q ss_pred hHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHH
Q 017988 116 FMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEE 195 (362)
Q Consensus 116 y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~ 195 (362)
...+++++....||..+++||.+++.+|+|+++|+++|++|||||++++++.+.++|++|+||||||||+||. ++++.+
T Consensus 18 ~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d 96 (257)
T 2ivx_A 18 RRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEH 96 (257)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHH
Confidence 3344555666789999999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred HHHhh--------------cCCCC--HHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHH
Q 017988 196 FCFIT--------------DNTYF--KEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVT 259 (362)
Q Consensus 196 l~~i~--------------~~~~t--~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~~~~~~~~~~~~la~~l~ 259 (362)
++.++ ++.|+ +++|++||+.||++|+|++++|||+.||.+|++.++.. ..+...|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~-----~~~~~~A~~~~ 171 (257)
T 2ivx_A 97 VIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS-----KDLAQTSYFMA 171 (257)
T ss_dssp HHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC-----HHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC-----cHHHHHHHHHH
Confidence 98654 34555 89999999999999999999999999999999887643 24668899999
Q ss_pred HHhhc-cccccCccHHHHHHHHHHHHHHhhcCC------CCCCcHHHHhhhCCChhhHHHHHHHHHHHHhcCCCCChhHH
Q 017988 260 ELSLL-DYSMLCHAPSLIAASAIFLAKYILLPA------KRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAI 332 (362)
Q Consensus 260 elsL~-d~~~l~y~PS~iAaAai~lA~~~l~~~------~~~w~~~L~~~t~~~~~~l~~c~~~L~~l~~~~~~~~~~~i 332 (362)
+.++. +..++.|+||.||+|||++|...++.. ...|...+ .+|++.++|.+|+..|.+++.+.+. +++.|
T Consensus 172 ~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~~~-~l~~~ 248 (257)
T 2ivx_A 172 TNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKTPN-RLKKI 248 (257)
T ss_dssp HHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTSHH-HHHHH
T ss_pred HhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhChH-HhhHH
Confidence 99985 445899999999999999999998521 24587654 4589999999999999999976543 67788
Q ss_pred HHhhc
Q 017988 333 REKYS 337 (362)
Q Consensus 333 ~~KY~ 337 (362)
+.++.
T Consensus 249 ~~~~~ 253 (257)
T 2ivx_A 249 RNWRA 253 (257)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87764
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=4.7e-37 Score=287.08 Aligned_cols=212 Identities=21% Similarity=0.286 Sum_probs=180.5
Q ss_pred CcchHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccC
Q 017988 113 STDFMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQ 192 (362)
Q Consensus 113 ~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~ 192 (362)
.|++.+.++++++..||..+++||.+++.+++|+++|+++|++|||||++++++.+.++|++|+||||||||+|| .+++
T Consensus 25 ~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE-~~~~ 103 (258)
T 2i53_A 25 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE-TPKK 103 (258)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT-CCCC
T ss_pred CchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc-cccc
Confidence 345566677888899999999999999999999999999999999999999999999999999999999999999 5889
Q ss_pred HHHHHHhh-----cCCC------CHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Q 017988 193 VEEFCFIT-----DNTY------FKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTEL 261 (362)
Q Consensus 193 i~~l~~i~-----~~~~------t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~~~~~~~~~~~~la~~l~el 261 (362)
+.+++..+ ++.| ++++|++||+.||++|+|++.+|||+.|+.+|++.++.+.+ ....+...|.++++.
T Consensus 104 l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~-~~~~~~~~A~~l~~~ 182 (258)
T 2i53_A 104 CKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKN-KIQKLVQMAWTFVND 182 (258)
T ss_dssp HHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHH
Confidence 99998654 3344 47899999999999999999999999999999987654321 112467899999999
Q ss_pred hhccccccCccHHHHHHHHHHHHHHhhcCCCCCCcHH-------HHhhhCCChhhHHHHHHHHHHHHhcCCC
Q 017988 262 SLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWNST-------LQHYTLYQPSDLMECVKDLHRLYCNSQS 326 (362)
Q Consensus 262 sL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~-------L~~~t~~~~~~l~~c~~~L~~l~~~~~~ 326 (362)
++.++.++.|+||.||+|||++|..+++...+.|... -..++|++.+++.+|++.|.++|.+...
T Consensus 183 s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~~~ 254 (258)
T 2i53_A 183 SLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQ 254 (258)
T ss_dssp HTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSSCC
T ss_pred HHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999985333334321 1124799999999999999998876543
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=285.48 Aligned_cols=208 Identities=16% Similarity=0.191 Sum_probs=185.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhc--
Q 017988 124 INASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITD-- 201 (362)
Q Consensus 124 i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~-- 201 (362)
-...+|..+++||.+++.+++|+++|+++|++|||||++++.+.+.++|++|+||||||||+||..+|.+.+++.++.
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~ 117 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV 117 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999999998888999887652
Q ss_pred ------------CCCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHhhcccccc
Q 017988 202 ------------NTYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSML 269 (362)
Q Consensus 202 ------------~~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~~~~~~~~~~~~la~~l~elsL~d~~~l 269 (362)
..+++++|++||+.||++|+|++.++||+.||.+|++.++.. ..+..+|.++++.++.+..++
T Consensus 118 ~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~-----~~~~~~A~~~l~~sl~t~~~l 192 (285)
T 3rgf_B 118 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE-----DMLLPLAWRIVNDTYRTDLCL 192 (285)
T ss_dssp HHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHTTSSHHH
T ss_pred HcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHccChhh
Confidence 247899999999999999999999999999999999988642 356789999999999999999
Q ss_pred CccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhhCCChhhHHHHHHHHHHHHhcC----CCCChhHHHHhhcCCc
Q 017988 270 CHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNS----QSSTLPAIREKYSLHK 340 (362)
Q Consensus 270 ~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t~~~~~~l~~c~~~L~~l~~~~----~~~~~~~i~~KY~~~~ 340 (362)
.|+||.||+|||++|..+++.....|... .|++.++|.+|+..|.++|... ....++++.+|+..++
T Consensus 193 ~~~Ps~IAaAaiylA~~~~~~~~~~W~~~----~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~ 263 (285)
T 3rgf_B 193 LYPPFMIALACLHVACVVQQKDARQWFAE----LSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPK 263 (285)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCCHHHHHT----SCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCC
T ss_pred ccCHHHHHHHHHHHHHHHcCCChhhHHHH----HCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCC
Confidence 99999999999999999986555567554 4899999999999999998863 2345788888888776
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=3.9e-35 Score=286.29 Aligned_cols=211 Identities=18% Similarity=0.190 Sum_probs=179.3
Q ss_pred hHhhhcccCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHH
Q 017988 116 FMEIIQKDINASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEE 195 (362)
Q Consensus 116 y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~ 195 (362)
....++.+....||..+++||.+++.+|+|+++|+++|++|||||++++.+.+.++|++|+||||||||+||. ++++.+
T Consensus 25 ~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d 103 (358)
T 2pk2_A 25 RRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEH 103 (358)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHH
T ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHH
Confidence 3344555667789999999999999999999999999999999999999999999999999999999999998 889999
Q ss_pred HHHhh--------------cCCCC--HHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHH
Q 017988 196 FCFIT--------------DNTYF--KEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVT 259 (362)
Q Consensus 196 l~~i~--------------~~~~t--~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~~~~~~~~~~~~la~~l~ 259 (362)
++.++ ++.|+ +++|++||+.||++|+|++.+|||+.||.+|++.+... ..+..+|++++
T Consensus 104 ~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~-----~~l~~~A~~ll 178 (358)
T 2pk2_A 104 VIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS-----KDLAQTSYFMA 178 (358)
T ss_dssp HHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC-----HHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC-----HHHHHHHHHHH
Confidence 98654 34454 88999999999999999999999999999999887542 24678899999
Q ss_pred HHhhccc-cccCccHHHHHHHHHHHHHHhhcC------CCCCCcHHHHhhhCCChhhHHHHHHHHHHHHhcCCCCChhHH
Q 017988 260 ELSLLDY-SMLCHAPSLIAASAIFLAKYILLP------AKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQSSTLPAI 332 (362)
Q Consensus 260 elsL~d~-~~l~y~PS~iAaAai~lA~~~l~~------~~~~w~~~L~~~t~~~~~~l~~c~~~L~~l~~~~~~~~~~~i 332 (362)
+.++.++ .++.|+||.||+|||++|..+++. ....|...+ .++++.++|.+|+..|.+++...+. .++.+
T Consensus 179 ~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~~-~L~~i 255 (358)
T 2pk2_A 179 TNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTPN-RLKRI 255 (358)
T ss_dssp HHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCTT-HHHHH
T ss_pred HHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCcc-cccch
Confidence 9998644 489999999999999999999852 124586654 3578999999999999999866554 46666
Q ss_pred HHh
Q 017988 333 REK 335 (362)
Q Consensus 333 ~~K 335 (362)
+.-
T Consensus 256 ~~~ 258 (358)
T 2pk2_A 256 WNW 258 (358)
T ss_dssp HHT
T ss_pred hcc
Confidence 543
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-34 Score=265.48 Aligned_cols=188 Identities=14% Similarity=0.175 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcc-hhhHHHHHHHHHHHhhhccccccCHHHHHHhhcC-----
Q 017988 129 RAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSR-QRLQLLGVACMMIAAKYEEICAPQVEEFCFITDN----- 202 (362)
Q Consensus 129 R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~-~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~----- 202 (362)
|..+++||.+++.+++|+++|+++|++|||||++++.+.+ .++|++|+||||||||+|| .++++.+++.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 9999999999999999999 57899999999875
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHhhccccccCccHHHHHHHHH
Q 017988 203 -TYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAI 281 (362)
Q Consensus 203 -~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai 281 (362)
.+++++|.+||+.||++|+|++.++||+.||.+|++.++.+ ..+...|.++++.++.+..++.|+||.||+|||
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~-----~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai 181 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN-----QKQLEFAWSIVNDSYASSLCLMAHPHQLAYAAL 181 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC-----HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHcCCchhccCHHHHHHHHH
Confidence 68999999999999999999999999999999999865321 245688999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCcHHHHhhhCCChhhHHHHHHHHHHHHhcCC
Q 017988 282 FLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYCNSQ 325 (362)
Q Consensus 282 ~lA~~~l~~~~~~w~~~L~~~t~~~~~~l~~c~~~L~~l~~~~~ 325 (362)
++|..+++...+.|...++ |++.+++.+|++.|.++|....
T Consensus 182 ~lA~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~i~~ly~~~~ 222 (235)
T 1zp2_A 182 LISCCNDENTIPKLLDLIK---STDAFKVILCVQRIISIYYFED 222 (235)
T ss_dssp HHHHTSCTTHHHHHHHHCC---HHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHhcCCCCCCCcchhh---cCCHHHHHHHHHHHHHHHhhCC
Confidence 9999887422123444332 8899999999999999987643
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=4.5e-33 Score=268.44 Aligned_cols=211 Identities=16% Similarity=0.164 Sum_probs=181.6
Q ss_pred CHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcC
Q 017988 125 NASMRAILIDWLVEVAEEYR--LVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDN 202 (362)
Q Consensus 125 ~~~~R~~lvdwl~ev~~~~~--l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~ 202 (362)
...+|...++||.++|.+|+ |+++|+++|++|||||++.+++.+.++|++|+||||||||+||. ++++.+|++.+.+
T Consensus 53 E~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~ 131 (323)
T 1jkw_A 53 EMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRE 131 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhcc
Confidence 34579999999999999999 99999999999999999999999999999999999999999997 6799999876643
Q ss_pred -----CCCHHHHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHccC--CCCchhHHHHHHHHHHHHhhccccccCccHHH
Q 017988 203 -----TYFKEEVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGI--NEVPSMQLECLANYVTELSLLDYSMLCHAPSL 275 (362)
Q Consensus 203 -----~~t~~ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~~--~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~ 275 (362)
.|++++|++||+.||++|+|++.++||+.||.+|+..++.. .-.....+...|.++++.++.++.++.|+||.
T Consensus 132 ~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~ 211 (323)
T 1jkw_A 132 SPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQ 211 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHH
T ss_pred ChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHH
Confidence 36789999999999999999999999999999999776321 00112346688999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHhh--hCCChhhHHHHHHHHHHHHhcCCC---CChhHHHHhh
Q 017988 276 IAASAIFLAKYILLPAKRPWNSTLQHY--TLYQPSDLMECVKDLHRLYCNSQS---STLPAIREKY 336 (362)
Q Consensus 276 iAaAai~lA~~~l~~~~~~w~~~L~~~--t~~~~~~l~~c~~~L~~l~~~~~~---~~~~~i~~KY 336 (362)
||+|||++|...++...+.|...+.++ ++++.+++.+|+..|..++..... ..+.+|.+|.
T Consensus 212 IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~KL 277 (323)
T 1jkw_A 212 IALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKL 277 (323)
T ss_dssp HHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 999999999999865557899888665 788999999999999999987432 3456677774
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.95 E-value=2.4e-26 Score=207.86 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHH
Q 017988 128 MRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKE 207 (362)
Q Consensus 128 ~R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ 207 (362)
......+||.+++..++|++.|+.+|+.||+||+..+.+...+.+++|+||||||||+||. |+++.+++.+++ +++.
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~~ 80 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISKK 80 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCHH
Confidence 3567889999999999999999999999999999999999999999999999999999996 789999999887 8999
Q ss_pred HHHHHHHHHHHHcCCCccCCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHHh
Q 017988 208 EVLEMESSILNYLKFEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYI 287 (362)
Q Consensus 208 ei~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~~~~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~ 287 (362)
+|.++|+.|++.|+|++.+++|+.|+.+|...++.+. .+...|.++.+.++.+.-+++|+|+.||+|||++|...
T Consensus 81 ~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~-----~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~ 155 (207)
T 1c9b_A 81 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK-----QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQA 155 (207)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998876532 46788999999988877789999999999999999998
Q ss_pred hcCCCCCCcHHHHhhhCCChhhHHHHHHHHHHHH
Q 017988 288 LLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLY 321 (362)
Q Consensus 288 l~~~~~~w~~~L~~~t~~~~~~l~~c~~~L~~l~ 321 (362)
. +.+.|...+.+++|++..++..|++.|.+..
T Consensus 156 ~--~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l 187 (207)
T 1c9b_A 156 S--AEKRTQKEIGDIAGVADVTIRQSYRLIYPRA 187 (207)
T ss_dssp S--SSCCCHHHHHHHHTCCHHHHHHHHHHHGGGH
T ss_pred H--CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 7 4567888999999999999999999988754
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.90 E-value=5.2e-22 Score=178.27 Aligned_cols=184 Identities=11% Similarity=0.086 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHH
Q 017988 129 RAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEE 208 (362)
Q Consensus 129 R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~e 208 (362)
.....++|.+++..++|++.+...|..|++||+....+.....+.++++|+|+|||.|+ .|.++.+++.+++ ++..+
T Consensus 9 l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~~~ 85 (200)
T 1ais_B 9 LAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDKKE 85 (200)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCHHH
Confidence 56889999999999999999999999999999999999889999999999999999999 6889999999887 78999
Q ss_pred HHHHHHHHHHHcCCCccC--CCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHH
Q 017988 209 VLEMESSILNYLKFEMTA--PTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKY 286 (362)
Q Consensus 209 i~~mE~~IL~~L~f~l~~--pT~~~FL~~~l~~~~~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~ 286 (362)
|.++++.|++.|+|++.. ++|..|+.+|...++... .+...|.++++.+..+.-+.+++|+.||||||++|.+
T Consensus 86 i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~ 160 (200)
T 1ais_B 86 IGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE-----KVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASL 160 (200)
T ss_dssp HHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999987532 4568899999999888788999999999999999999
Q ss_pred hhcCCCCCCcHHHHhhhCCChhhHHHHHHHHHHHHh
Q 017988 287 ILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYC 322 (362)
Q Consensus 287 ~l~~~~~~w~~~L~~~t~~~~~~l~~c~~~L~~l~~ 322 (362)
+. +.+.|...+..++|++...+..|++.|.+.+.
T Consensus 161 ~~--~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 161 LE--GEKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HT--TCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred Hh--CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 87 46679999999999999999999999998764
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.7e-18 Score=167.98 Aligned_cols=183 Identities=12% Similarity=0.067 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHH
Q 017988 129 RAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEE 208 (362)
Q Consensus 129 R~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~e 208 (362)
.......|.+++..++|+..+.-.|..||.|++..+.+.....+.++++|||||||.|+. |.++.+++.+++ +++.+
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~ke 202 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKE 202 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHH
Confidence 456778999999999999999999999999999999999999999999999999999885 889999999887 88999
Q ss_pred HHHHHHHHHHHcC------------CCccCCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHhhccccccCccHHHH
Q 017988 209 VLEMESSILNYLK------------FEMTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLI 276 (362)
Q Consensus 209 i~~mE~~IL~~L~------------f~l~~pT~~~FL~~~l~~~~~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~i 276 (362)
|.++++.|++.|+ +++.+++|..|+.+|...++... .+...|.+|++.+.-+.-+.+++|+.|
T Consensus 203 Igr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~-----~v~~~A~~i~~~~~~~~l~~Gr~P~~I 277 (345)
T 3k7a_M 203 FGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-----QVTTSAEYTAKKCKEIKEIAGKSPITI 277 (345)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHhchhcCCCHHHH
Confidence 9999999999999 99999999999999999887543 356789999998887777789999999
Q ss_pred HHHHHHHHHHhhcCCCCCCcHHHHhhhCCChhhHHHHHHHHHHHH
Q 017988 277 AASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLY 321 (362)
Q Consensus 277 AaAai~lA~~~l~~~~~~w~~~L~~~t~~~~~~l~~c~~~L~~l~ 321 (362)
||||||+|..++ +...|...+...+|++...|+.+++.|.+..
T Consensus 278 AaAaIylAa~~~--~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 278 AVVSIYLNILLF--QIPITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999987 4556888999999999999999999888754
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.32 E-value=3.9e-12 Score=123.12 Aligned_cols=181 Identities=12% Similarity=0.066 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHH
Q 017988 130 AILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEV 209 (362)
Q Consensus 130 ~~lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei 209 (362)
......|.+++..++|+..+.-.|..++.+++....+.......++++|+|+|||.++ .|-++.+++.+++ .++.+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~-~prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE-VARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC-CBCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC-CCccHHHHHHHhC--CCHHHH
Confidence 4566788999999999999999999999999999888888899999999999999987 5779999998876 678999
Q ss_pred HHHHHHHHHHcCCC------------ccCCCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHhhccccccCccHHHHH
Q 017988 210 LEMESSILNYLKFE------------MTAPTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIA 277 (362)
Q Consensus 210 ~~mE~~IL~~L~f~------------l~~pT~~~FL~~~l~~~~~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iA 277 (362)
.+..+.|.+.|+.. +...+|..|+.+|...++... ++...|..|++.+.-+.-..+.+|+.||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~-----~v~~~A~~i~~~~~~~~i~~GR~P~~IA 278 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-----QVTTSAEYTAKKCKEIKEIAGKSPITIA 278 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHHhcccccCCChHHHH
Confidence 99999999999974 677899999999998886643 3456777777766554445679999999
Q ss_pred HHHHHHHHHhhcCCCCCCcHHHHhhhCCChhhHHHHHHHHHHH
Q 017988 278 ASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRL 320 (362)
Q Consensus 278 aAai~lA~~~l~~~~~~w~~~L~~~t~~~~~~l~~c~~~L~~l 320 (362)
|||||+|..+.+ ...-...+...+|.+..-++..++.|.+.
T Consensus 279 AAaIylAa~l~g--~~~t~~eIa~v~~Vse~TIr~rykel~~~ 319 (345)
T 4bbr_M 279 VVSIYLNILLFQ--IPITAAKVGQTLQVTEGTIKSGYKILYEH 319 (345)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHhC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999998873 22234556667777777777666666553
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.49 E-value=9.1e-07 Score=82.69 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHhhccC---CcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHH
Q 017988 132 LIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSG---NPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEE 208 (362)
Q Consensus 132 lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~---~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~e 208 (362)
+-+|+..+...-+++.+++-.|..|+||+... ..+.....+-+-++||.+|+|+-+.....-+.+..+++ ++.+|
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgG--isl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGG--VRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHT--SCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccC--cCHHH
Confidence 56789999999999999999999999999874 34567788999999999999998887788888888844 79999
Q ss_pred HHHHHHHHHHHcCCCccCCCHHHHHHHHHHH
Q 017988 209 VLEMESSILNYLKFEMTAPTAKCFLRRFVRA 239 (362)
Q Consensus 209 i~~mE~~IL~~L~f~l~~pT~~~FL~~~l~~ 239 (362)
+..||+..|..|+|+|.+. ...|..+++..
T Consensus 155 LN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~ 184 (293)
T 2pmi_B 155 LNILENDFLKRVNYRIIPR-DHNITLCSIEQ 184 (293)
T ss_dssp HHHHHHHHHHTTTTCCSCC-TTHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCceeeC-HHHHHHHHHHH
Confidence 9999999999999999776 45666666654
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.74 E-value=0.0087 Score=52.51 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHHH
Q 017988 134 DWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEME 213 (362)
Q Consensus 134 dwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~mE 213 (362)
++|...+..++++.++...|..++.+..............+|++|+++|++.... +.+.+++..+++ .+..+|.+.=
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~~ 186 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNRY 186 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHHH
Confidence 5778888899999999999999999999877777788999999999999998763 457888888877 6888999999
Q ss_pred HHHHHHcCCCcc
Q 017988 214 SSILNYLKFEMT 225 (362)
Q Consensus 214 ~~IL~~L~f~l~ 225 (362)
+.+.+.|+.++.
T Consensus 187 ~~l~~~l~~~~~ 198 (200)
T 1ais_B 187 KELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHTCCCC
T ss_pred HHHHHHcCCCCC
Confidence 999999986653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.13 E-value=0.09 Score=46.19 Aligned_cols=86 Identities=8% Similarity=0.008 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHH
Q 017988 133 IDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEM 212 (362)
Q Consensus 133 vdwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~m 212 (362)
.++|...+..++++.++..+|..++..-+...-........+|++|+++|++.... +....++..+++ ++..+|.+.
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~-~~~~~~i~~~~~--v~~~tI~~~ 179 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE-KRTQKEIGDIAG--VADVTIRQS 179 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSS-CCCHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCC-CCCHHHHHHHhC--CCHHHHHHH
Confidence 45677888899999999999999999988766667788999999999999998763 446777777665 677888877
Q ss_pred HHHHHHHcC
Q 017988 213 ESSILNYLK 221 (362)
Q Consensus 213 E~~IL~~L~ 221 (362)
=+.+++.++
T Consensus 180 ~~~l~~~l~ 188 (207)
T 1c9b_A 180 YRLIYPRAP 188 (207)
T ss_dssp HHHHGGGHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 22
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=88.34 E-value=1.6 Score=39.30 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhhc-cCCcCcchhhHHHHHHHHHHHhhhccccccCHH---HHHHhhcCCCCHHHH
Q 017988 134 DWLVEVAEEYRLVPDTLYLTVNYIDRYL-SGNPMSRQRLQLLGVACMMIAAKYEEICAPQVE---EFCFITDNTYFKEEV 209 (362)
Q Consensus 134 dwl~ev~~~~~l~~eTl~lAv~llDRfL-s~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~---~l~~i~~~~~t~~ei 209 (362)
++|......++.+.++..+|..++..-+ .....-......+|++|+++|+++-....|... ......+..++.++|
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 4566666778888888888888875444 233345567889999999999998664433211 122222345789999
Q ss_pred HHHHHHHHHHc
Q 017988 210 LEMESSILNYL 220 (362)
Q Consensus 210 ~~mE~~IL~~L 220 (362)
...-..|++.+
T Consensus 228 ~~~~~~i~~~~ 238 (257)
T 2ivx_A 228 DELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888888765
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=87.61 E-value=3.5 Score=36.59 Aligned_cols=69 Identities=12% Similarity=-0.013 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhccccccC-ccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhh--------CCChhhHHHHHHHHHHHHh
Q 017988 252 ECLANYVTELSLLDYSMLC-HAPSLIAASAIFLAKYILLPAKRPWNSTLQHYT--------LYQPSDLMECVKDLHRLYC 322 (362)
Q Consensus 252 ~~la~~l~elsL~d~~~l~-y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t--------~~~~~~l~~c~~~L~~l~~ 322 (362)
..+|..+.+-.+....+.. +.+..||+||+++|.+... .+.-...+...+ .++.+++..+-..|.+.+.
T Consensus 49 ~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee--~~~~l~d~~~~~~~~~~~~~~~~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 49 LATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE--CPVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLD 126 (235)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc--CcccHHHHHHHHHHHccchhhccHHHHHHHHHHHHHHCC
Confidence 3455556566666667778 9999999999999999873 333334454444 5788889888888777654
No 24
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=87.50 E-value=1.6 Score=39.24 Aligned_cols=88 Identities=10% Similarity=0.128 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCch----HHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCH------HHHHHhhcCC
Q 017988 134 DWLVEVAEEYRLVP----DTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQV------EEFCFITDNT 203 (362)
Q Consensus 134 dwl~ev~~~~~l~~----eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i------~~l~~i~~~~ 203 (362)
+|+......++.+. ++..+|..+++.-+.....-......+|++|+++|+++-....+.. ..........
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 56777777888776 5778898999887776666677789999999999999865432211 1111111235
Q ss_pred CCHHHHHHHHHHHHHHcC
Q 017988 204 YFKEEVLEMESSILNYLK 221 (362)
Q Consensus 204 ~t~~ei~~mE~~IL~~L~ 221 (362)
++.++|...-..|++...
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 889999998888887654
No 25
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=86.02 E-value=4 Score=38.71 Aligned_cols=89 Identities=10% Similarity=0.002 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhhCCC
Q 017988 227 PTAKCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTLYQ 306 (362)
Q Consensus 227 pT~~~FL~~~l~~~~~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t~~~ 306 (362)
-..+..|+.+...++... .+...|..+.....-.-.+-+.+...+||||||+|++.. +.+.-...+...++.+
T Consensus 127 ~~a~~~I~~~~~~L~Lp~-----~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~--~~prtl~eI~~~~~v~ 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPK-----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRA--EVARTFKEIQSLIHVK 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHT--CCBCCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhc--CCCccHHHHHHHhCCC
Confidence 344555666665554432 234456666555443333456889999999999999986 3444456777888999
Q ss_pred hhhHHHHHHHHHHHHh
Q 017988 307 PSDLMECVKDLHRLYC 322 (362)
Q Consensus 307 ~~~l~~c~~~L~~l~~ 322 (362)
..+|..+++.|.+.+.
T Consensus 200 ~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 200 TKEFGKTLNIMKNILR 215 (345)
T ss_dssp TTHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999887654
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=85.72 E-value=2.8 Score=38.55 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHHHHH
Q 017988 134 DWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVLEME 213 (362)
Q Consensus 134 dwl~ev~~~~~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~~mE 213 (362)
++|...+..++.+.++..+|..++..-+.....-......||++|+++|++...... ...... -.++.++|...-
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~--~~~~~~~l~~~~ 233 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA---RQWFAE--LSVDMEKILEII 233 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHT--SCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh---hhHHHH--HCCCHHHHHHHH
Confidence 466677777888889999999999887765555667789999999999999865322 233222 247788888777
Q ss_pred HHHHHHc
Q 017988 214 SSILNYL 220 (362)
Q Consensus 214 ~~IL~~L 220 (362)
..|+...
T Consensus 234 ~~il~ly 240 (285)
T 3rgf_B 234 RVILKLY 240 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 27
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=84.18 E-value=4.4 Score=36.40 Aligned_cols=85 Identities=11% Similarity=0.179 Sum_probs=56.1
Q ss_pred HHHHHHHHHcCCchHHH----HHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccC----HHHHHHhhcCCCC
Q 017988 134 DWLVEVAEEYRLVPDTL----YLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQ----VEEFCFITDNTYF 205 (362)
Q Consensus 134 dwl~ev~~~~~l~~eTl----~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~----i~~l~~i~~~~~t 205 (362)
+|+......++++.++. ..|..+++.-+.....-....-.+|++|+++|.+.....+.. ...+..+++ ++
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg--~~ 231 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILN--FS 231 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHT--CC
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHC--cC
Confidence 45555666666666543 356777776655555666778999999999999985222222 455666665 67
Q ss_pred HHHHHHHHHHHHHHc
Q 017988 206 KEEVLEMESSILNYL 220 (362)
Q Consensus 206 ~~ei~~mE~~IL~~L 220 (362)
.++|...=..|.+.+
T Consensus 232 ~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 232 TNTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887766665543
No 28
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=82.59 E-value=5.3 Score=35.92 Aligned_cols=86 Identities=10% Similarity=-0.063 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCchHH----HHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccc-----cCHHHHHHhhcCC
Q 017988 133 IDWLVEVAEEYRLVPDT----LYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICA-----PQVEEFCFITDNT 203 (362)
Q Consensus 133 vdwl~ev~~~~~l~~eT----l~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~-----p~i~~l~~i~~~~ 203 (362)
.+|+......++++.++ ..+|..+++.-+.....-....-.+|++|+++|.+.-...+ .-...+..+++
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~-- 229 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILG-- 229 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHC--
Confidence 35666666666766554 34567777766655556677788999999999999866321 22344545544
Q ss_pred CCHHHHHHHHHHHHHHc
Q 017988 204 YFKEEVLEMESSILNYL 220 (362)
Q Consensus 204 ~t~~ei~~mE~~IL~~L 220 (362)
++.++|...=..|.+.+
T Consensus 230 ~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 230 CDVSVLQAAVEQILTSV 246 (257)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 78888887666665543
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=81.55 E-value=1.4 Score=42.16 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHhhcc-CCcCcchhhHHHHHHHHHHHhhhccccccCH---HHHHHhhcCCCCHHHH
Q 017988 134 DWLVEVAEEYRLVPDTLYLTVNYIDRYLS-GNPMSRQRLQLLGVACMMIAAKYEEICAPQV---EEFCFITDNTYFKEEV 209 (362)
Q Consensus 134 dwl~ev~~~~~l~~eTl~lAv~llDRfLs-~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i---~~l~~i~~~~~t~~ei 209 (362)
+||......++.+.++..+|..++..-+. ..-.-......||++|+++|+++-....|.- .......+..++.++|
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l 234 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELL 234 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHH
Confidence 45666677788888888899888855543 3324556788999999999999876443321 1122222335788999
Q ss_pred HHHHHHHHHHc
Q 017988 210 LEMESSILNYL 220 (362)
Q Consensus 210 ~~mE~~IL~~L 220 (362)
...-..|++.+
T Consensus 235 ~~i~~~il~~y 245 (358)
T 2pk2_A 235 DELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99888888766
No 30
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=80.82 E-value=4.1 Score=36.74 Aligned_cols=85 Identities=11% Similarity=-0.057 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCch-HHHHHHHHHHHhhccCCc-CcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHH
Q 017988 133 IDWLVEVAEEYRLVP-DTLYLTVNYIDRYLSGNP-MSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVL 210 (362)
Q Consensus 133 vdwl~ev~~~~~l~~-eTl~lAv~llDRfLs~~~-v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~ 210 (362)
.+|+......++++. .+..+|-.+++.-+.... .-......+|++|+++|++.-.. ++-...+..+++ ++.++|.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g--~~~~~i~ 216 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTG--YTLESLK 216 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhC--cCHHHHH
Confidence 356666666677655 666777777776443333 45566788999999999997654 333445656655 6788888
Q ss_pred HHHHHHHHHc
Q 017988 211 EMESSILNYL 220 (362)
Q Consensus 211 ~mE~~IL~~L 220 (362)
..=..|.+.+
T Consensus 217 ~~~~~l~~~~ 226 (260)
T 2cch_B 217 PCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666665543
No 31
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=79.17 E-value=11 Score=34.15 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhhC--CChhhHHHHHHHHHHHHhc
Q 017988 253 CLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTL--YQPSDLMECVKDLHRLYCN 323 (362)
Q Consensus 253 ~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t~--~~~~~l~~c~~~L~~l~~~ 323 (362)
.+|..+.+-.+....+-...+-.+|+||+++|.+... ..++-...+...++ |+.+++..+-..|.+.+.-
T Consensus 60 ~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE-~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f 131 (269)
T 2b9r_A 60 YMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEE-MYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNF 131 (269)
T ss_dssp HHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhccc-ccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 4555566666655566778999999999999999873 33444567777774 8899999988888876543
No 32
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=77.88 E-value=1.4 Score=41.77 Aligned_cols=86 Identities=9% Similarity=-0.009 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhhCCChhh
Q 017988 230 KCFLRRFVRAAQGINEVPSMQLECLANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTLYQPSD 309 (362)
Q Consensus 230 ~~FL~~~l~~~~~~~~~~~~~~~~la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t~~~~~~ 309 (362)
+.+++.+...++... .+...|..+....+....+-+.+...||+||||+|.+.. +.+.-...+...++++..+
T Consensus 130 ~~~I~~~~~~L~Lp~-----~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e--~~prtl~ei~~~~~v~~ke 202 (345)
T 3k7a_M 130 FAKITMLCDAAELPK-----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRA--EVARTFKEIQSLIHVKTKE 202 (345)
T ss_dssp HHHHHHHHHHTTCCH-----HHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTT--BSSCCHHHHHHSSSCCSHH
T ss_pred HHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHc--CCCccHHHHHHHHCCCHHH
Confidence 456666665554321 233345555555544444566889999999999998865 3344456777888999999
Q ss_pred HHHHHHHHHHHHh
Q 017988 310 LMECVKDLHRLYC 322 (362)
Q Consensus 310 l~~c~~~L~~l~~ 322 (362)
|..+...|.+.+.
T Consensus 203 Igr~~~~l~~~L~ 215 (345)
T 3k7a_M 203 FGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998775
No 33
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=76.47 E-value=18 Score=32.63 Aligned_cols=68 Identities=19% Similarity=0.072 Sum_probs=47.1
Q ss_pred HHHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhhC--CChhhHHHHHHHHHHHHh
Q 017988 254 LANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTL--YQPSDLMECVKDLHRLYC 322 (362)
Q Consensus 254 la~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t~--~~~~~l~~c~~~L~~l~~ 322 (362)
+|..+.+-.+.-.......+-.+|+||+++|.+... ..++-...+..+++ |+.+++..+-..|.+.+.
T Consensus 80 lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE-~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 80 LAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKE-TIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCC
Confidence 344444444444455668899999999999999873 22334456666664 889999988888877654
No 34
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=73.97 E-value=10 Score=35.39 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=55.8
Q ss_pred HHHHHHHHHHc---CCchHHHHHHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccC-HHHHHHhhcCCCCHHH
Q 017988 133 IDWLVEVAEEY---RLVPDTLYLTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQ-VEEFCFITDNTYFKEE 208 (362)
Q Consensus 133 vdwl~ev~~~~---~l~~eTl~lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~-i~~l~~i~~~~~t~~e 208 (362)
..++..+...+ +.......+|..++..-+.....-......||++|+++|++......+. ..++....+..++.++
T Consensus 168 ~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~ 247 (323)
T 1jkw_A 168 EGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQ 247 (323)
T ss_dssp HHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHH
Confidence 34444444432 2334556778888876655544455678899999999999987654443 2223333335577788
Q ss_pred HHHHHHHHHHHcC
Q 017988 209 VLEMESSILNYLK 221 (362)
Q Consensus 209 i~~mE~~IL~~L~ 221 (362)
+...=+.|+..+.
T Consensus 248 l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 248 LLDIMKSMRNLVK 260 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877777766554
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=73.95 E-value=18 Score=33.39 Aligned_cols=67 Identities=16% Similarity=-0.021 Sum_probs=45.8
Q ss_pred HHHHHHHhhccccccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhhC--CChhhHHHHHHHHHHHHh
Q 017988 255 ANYVTELSLLDYSMLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTL--YQPSDLMECVKDLHRLYC 322 (362)
Q Consensus 255 a~~l~elsL~d~~~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t~--~~~~~l~~c~~~L~~l~~ 322 (362)
|..+++-.+....+....+-.+|+||+++|.+... ..++-...+..+++ |+.++|...-..|.+.+.
T Consensus 95 Av~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE-~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~ 163 (306)
T 3g33_B 95 AMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRE-TTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLK 163 (306)
T ss_dssp HHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHC-SSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcC
Confidence 33333433434445668899999999999999863 33334455666665 788899888887777654
No 36
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=65.78 E-value=44 Score=29.25 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHhhccC---CcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHH
Q 017988 132 LIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSG---NPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEE 208 (362)
Q Consensus 132 lvdwl~ev~~~~~l~~eTl~lAv~llDRfLs~---~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~e 208 (362)
+.+-|..++++-+++..++--||.+--.|.-. .+..-++-+-+|++|++||+---- .|..+.++..+ |.....-+
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~-~PiplaE~r~l-D~sL~Dve 92 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQ-QPLPLAEVRCL-DSSLGDVE 92 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHH-CTTCCCHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcC-CCccHHHHHHH-hhhhhHHH
Confidence 44556889999999999999999999888764 345667789999999999996433 45566666433 55555334
Q ss_pred HHHHHHHHHHHcCC
Q 017988 209 VLEMESSILNYLKF 222 (362)
Q Consensus 209 i~~mE~~IL~~L~f 222 (362)
+.+. +|++.|+-
T Consensus 93 lrr~--Eiv~~l~l 104 (260)
T 3h4c_A 93 LRRA--DIVRELHL 104 (260)
T ss_dssp HHHH--HHHHHTTC
T ss_pred HHHH--HHHHHccC
Confidence 4444 35565554
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=63.28 E-value=35 Score=30.93 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=42.1
Q ss_pred cccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhh--CCChhhHHHHHHHHHHHHhc
Q 017988 267 SMLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYT--LYQPSDLMECVKDLHRLYCN 323 (362)
Q Consensus 267 ~~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t--~~~~~~l~~c~~~L~~l~~~ 323 (362)
.......-.+|+||+++|.+... ..++-...+..++ .|+.+++..+-..|.+.+.-
T Consensus 87 ~v~~~~lqlv~~acL~iA~K~eE-~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~ 144 (283)
T 1w98_B 87 NVVKTLLQLIGISSLFIAAKLEE-IYPPKLHQFAYVTDGACSGDEILTMELMIMKALKW 144 (283)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHC-SSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc-cCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCC
Confidence 34567888999999999999873 3344456666767 48899999988888877654
No 38
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=61.33 E-value=37 Score=31.36 Aligned_cols=90 Identities=10% Similarity=-0.045 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHccCCCCchhHHHHHH-HHHHHHhhcccc--ccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhh
Q 017988 227 PTAKCFLRRFVRAAQGINEVPSMQLECLA-NYVTELSLLDYS--MLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYT 303 (362)
Q Consensus 227 pT~~~FL~~~l~~~~~~~~~~~~~~~~la-~~l~elsL~d~~--~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t 303 (362)
++...|+.++++..+... ...-++ .||--+...... .......-+-.+|+.+|.+.+ .+...|+....++.
T Consensus 75 ISI~~Yl~RI~k~t~ls~-----~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~l-dD~~ysN~~wAkVg 148 (293)
T 2pmi_B 75 ISIFNYFIRLTKFSSLEH-----CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGL-CDSFSTNAHYAKVG 148 (293)
T ss_dssp SCHHHHHHHHHHTTTCCH-----HHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHH-CSSCCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhc-cccccChhHhhhcc
Confidence 456778888887654421 111122 233333322222 345778889999999999999 45667889999999
Q ss_pred CCChhhHHHHHHHHHHHHh
Q 017988 304 LYQPSDLMECVKDLHRLYC 322 (362)
Q Consensus 304 ~~~~~~l~~c~~~L~~l~~ 322 (362)
|++..++...=..+..++.
T Consensus 149 Gisl~ELN~LE~eFL~lLd 167 (293)
T 2pmi_B 149 GVRCHELNILENDFLKRVN 167 (293)
T ss_dssp TSCHHHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHHHHcC
Confidence 9999999877766666543
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=50.59 E-value=1.1e+02 Score=27.32 Aligned_cols=56 Identities=11% Similarity=-0.111 Sum_probs=39.8
Q ss_pred cccCccHHHHHHHHHHHHHHhhcCCCCCCcHHHHhhhC--CChhhHHHHHHHHHHHHhc
Q 017988 267 SMLCHAPSLIAASAIFLAKYILLPAKRPWNSTLQHYTL--YQPSDLMECVKDLHRLYCN 323 (362)
Q Consensus 267 ~~l~y~PS~iAaAai~lA~~~l~~~~~~w~~~L~~~t~--~~~~~l~~c~~~L~~l~~~ 323 (362)
.......-.+|++|+++|.+... ..++-...+..+++ |+.+++...=..|.+.+.-
T Consensus 85 ~v~~~~lqLvg~tcl~iAsK~eE-~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w 142 (252)
T 1f5q_B 85 RIDRENYQSTAAVALHIAGKVRA-YMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSW 142 (252)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHC-SSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCC
Confidence 44456778999999999999873 33444456666664 7888888877777766543
No 40
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=41.78 E-value=33 Score=28.41 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHH
Q 017988 171 LQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVL 210 (362)
Q Consensus 171 lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~ 210 (362)
-.|+-++|-++|..+....+-.++.+..+. +-||+++-.
T Consensus 111 ~~Lldl~c~~vA~~ikgkt~eeir~~f~I~-nd~t~eEe~ 149 (160)
T 2p1m_A 111 KNLLDLTCQTVADMIKGKTPEEIRTTFNIK-NDFTPEEEE 149 (160)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCC-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHHH
Confidence 358889999999999775555555555553 458876643
No 41
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=40.83 E-value=68 Score=29.68 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=46.1
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhhccC----CcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhc
Q 017988 136 LVEVAEEYRLVPDTLYLTVNYIDRYLSG----NPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITD 201 (362)
Q Consensus 136 l~ev~~~~~l~~eTl~lAv~llDRfLs~----~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~ 201 (362)
..++|+.++++..|.--|...+.+.-+. .....+ -+..-.+|||+|+.-.+....++.++++.++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~-~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQK-KKELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------C-HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccc-hHHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 4578999999999999999999996553 123333 3444445699999877767778888877664
No 42
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=38.97 E-value=67 Score=24.46 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHhhhCCChhhHHHHHHHHHHHHh
Q 017988 275 LIAASAIFLAKYILLPAKRPWNSTLQHYTLYQPSDLMECVKDLHRLYC 322 (362)
Q Consensus 275 ~iAaAai~lA~~~l~~~~~~w~~~L~~~t~~~~~~l~~c~~~L~~l~~ 322 (362)
+-++||+|.|.+.. ....-...|...+|.++.++......+.++..
T Consensus 47 ~f~aaA~~~acr~~--K~kVdK~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 47 LFTSAALLSACKIL--KLKVDKNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp HHHHHHHHHHHHHT--TCCCCHHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--ccCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44567788887776 33444568889999999999999998887653
No 43
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=37.95 E-value=56 Score=26.80 Aligned_cols=56 Identities=27% Similarity=0.418 Sum_probs=36.5
Q ss_pred cCCchHHHH---HHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHH
Q 017988 143 YRLVPDTLY---LTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVL 210 (362)
Q Consensus 143 ~~l~~eTl~---lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~ 210 (362)
++++.++++ +|.+|||- -.|+-++|-++|..+....+-.++.+..+. +-||+++-.
T Consensus 92 ~~id~~~l~eLl~AAnyL~I-----------~~Lld~~c~~va~~i~gkt~eeir~~f~I~-~d~t~eEe~ 150 (159)
T 2ast_A 92 LKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNIK-NDFTEEEEA 150 (159)
T ss_dssp TCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHSSCCHHHHHHHTTCC-CCSCTTHHH
T ss_pred HcCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHHH
Confidence 356666543 46666654 357888999999999876555566655553 447776543
No 44
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=31.58 E-value=88 Score=26.06 Aligned_cols=55 Identities=22% Similarity=0.394 Sum_probs=36.6
Q ss_pred CCchHHHH---HHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHHH
Q 017988 144 RLVPDTLY---LTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEVL 210 (362)
Q Consensus 144 ~l~~eTl~---lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei~ 210 (362)
++.+++++ +|.+|||- -.|+-++|-.+|.++....|-.++.+..+.+ -||+++-.
T Consensus 100 ~vd~~~LfeLi~AAnyLdI-----------k~Lldl~c~~vA~~ikgktpeeiR~~f~I~n-d~t~eEe~ 157 (169)
T 3v7d_A 100 KVDQEMLYEIILAANYLNI-----------KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVN-DFTPEEEA 157 (169)
T ss_dssp CSCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCC-CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCC-CCCHHHHH
Confidence 45666553 46666654 3678889999999987766655666665543 48887643
No 45
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=30.16 E-value=1.8e+02 Score=22.03 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=51.4
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHhhccCC------cCcchhhHHHHHHHHHHHhhhccccccCHHHHHHhhcCCCCHHHH
Q 017988 136 LVEVAEEYRLVPDTLYLTVNYIDRYLSGN------PMSRQRLQLLGVACMMIAAKYEEICAPQVEEFCFITDNTYFKEEV 209 (362)
Q Consensus 136 l~ev~~~~~l~~eTl~lAv~llDRfLs~~------~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l~~i~~~~~t~~ei 209 (362)
+.++|..|++.. ..-.|-.++++|=..- .+.-.+.+ ..++|+|.|||.--..+.+ ..++..++ .++.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~-f~aaA~~~acr~~K~kVdK-~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPL-FTSAALLSACKILKLKVDK-NKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHH-HHHHHHHHHHHHTTCCCCH-HHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccH-HHHHHHHHHHHHHccCCCH-HHHHHHHC--CCHHHH
Confidence 457788888765 7788889999996542 23333444 5568999999987765543 33444443 567777
Q ss_pred HHHHHHHHH
Q 017988 210 LEMESSILN 218 (362)
Q Consensus 210 ~~mE~~IL~ 218 (362)
-+.+..+-+
T Consensus 81 ~~l~~~~e~ 89 (95)
T 3m03_A 81 DRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665544
No 46
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=27.52 E-value=1.7e+02 Score=23.61 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHc---CCchHHHHHH-----HHHH-HhhccCCcCcchhhHHHHHHHHHHHhhh--cccccc
Q 017988 130 AILIDWLVEVAEEY---RLVPDTLYLT-----VNYI-DRYLSGNPMSRQRLQLLGVACMMIAAKY--EEICAP 191 (362)
Q Consensus 130 ~~lvdwl~ev~~~~---~l~~eTl~lA-----v~ll-DRfLs~~~v~~~~lqLva~tcL~IAsK~--eE~~~p 191 (362)
..+|-|+..|-+.+ |.....+-.- |.++ --.+....-....+|-+-+|||++|=-| .|+.-|
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~se~eLqa~~lTCLYlsYSYmGNEISYP 100 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISYP 100 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCSHHHHHHHHHHHHHHHHHHHCSSSCCC
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHhccccccc
Confidence 57888999887765 3222222111 1222 2222333345677999999999999887 455433
No 47
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=25.79 E-value=98 Score=24.81 Aligned_cols=43 Identities=26% Similarity=0.450 Sum_probs=26.1
Q ss_pred cCCchHHHH---HHHHHHHhhccCCcCcchhhHHHHHHHHHHHhhhccccccCHHHH
Q 017988 143 YRLVPDTLY---LTVNYIDRYLSGNPMSRQRLQLLGVACMMIAAKYEEICAPQVEEF 196 (362)
Q Consensus 143 ~~l~~eTl~---lAv~llDRfLs~~~v~~~~lqLva~tcL~IAsK~eE~~~p~i~~l 196 (362)
+++..++++ +|.+|||- -.|+-++|-++|..+....|-.++.+
T Consensus 87 ~~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeiR~~ 132 (141)
T 1fs1_B 87 LKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKT 132 (141)
T ss_dssp TCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 355666553 46666654 46777888888888866444334433
No 48
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=24.60 E-value=1.9e+02 Score=24.54 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHc---CCchHHHHHH-----HHHH-HhhccCCcCcchhhHHHHHHHHHHHhhh--ccccc
Q 017988 130 AILIDWLVEVAEEY---RLVPDTLYLT-----VNYI-DRYLSGNPMSRQRLQLLGVACMMIAAKY--EEICA 190 (362)
Q Consensus 130 ~~lvdwl~ev~~~~---~l~~eTl~lA-----v~ll-DRfLs~~~v~~~~lqLva~tcL~IAsK~--eE~~~ 190 (362)
..+|-||..|-+.+ |.....+-.- ++++ --.+....-....+|-+-+|||+||=-| .|+.-
T Consensus 73 ~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~~~te~eLqa~vLTCLYlsYSYmGNEISY 144 (208)
T 1unl_D 73 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNEISY 144 (208)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred cceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHhhCccccc
Confidence 57888999888775 3222222111 1222 2223333445677999999999999887 45543
Done!