Query 017989
Match_columns 362
No_of_seqs 172 out of 1614
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 1.8E-48 6.1E-53 369.5 27.1 296 3-339 5-305 (320)
2 3v5u_A Uncharacterized membran 99.9 3.1E-22 1.1E-26 189.5 14.2 145 191-340 4-148 (320)
3 3o7q_A L-fucose-proton symport 18.4 5.2E+02 0.018 23.2 15.0 44 190-233 25-68 (438)
4 2oar_A Large-conductance mecha 16.3 1E+02 0.0034 25.7 3.1 32 248-279 31-69 (174)
5 2i68_A Protein EMRE; transmemb 14.4 4.5E+02 0.015 20.6 7.3 9 310-318 78-86 (137)
6 3hzq_A Large-conductance mecha 7.4 1.8E+02 0.0061 22.4 1.7 28 251-278 31-65 (114)
7 3bxl_B CAM, voltage-dependent 7.3 1.2E+02 0.0041 16.8 0.4 20 326-345 2-21 (26)
8 3arc_L Photosystem II reaction 5.2 5.9E+02 0.02 15.2 4.1 36 90-125 1-36 (37)
9 1dw9_A Cyanate lyase; cyanate 5.2 4.5E+02 0.015 21.3 3.0 37 215-251 30-66 (156)
10 4djk_A Probable glutamate/gamm 4.7 1.8E+03 0.062 20.2 9.4 122 65-186 369-491 (511)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=1.8e-48 Score=369.52 Aligned_cols=296 Identities=18% Similarity=0.161 Sum_probs=241.7
Q ss_pred cchhHHHHHHHHHHhHHHHHHHHHHHHHHhC--ChhHHHHHHHhh-hHHHHHHHHHHhhCCcchhHHHHhHHHHHHHHHH
Q 017989 3 QPWVFALSLLGLTPLAERVSFLTEQIAFYTG--PTVGGLLNATCG-NATELIIAIFALYGRKIDVVKYSLLGSILSNLLL 79 (362)
Q Consensus 3 ~~~~F~~~~~~i~~~a~~~~~~~e~l~~~~g--~~~~g~~~~a~g-s~pEl~v~i~a~~~g~~~ia~g~iiGS~i~nlll 79 (362)
.+..|++++++++++++++++++|++++++| |.+.|++++++| |+||+++++.|+.+|++|+++||++|||++|+++
T Consensus 5 ~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nill 84 (320)
T 3v5u_A 5 GVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGL 84 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHH
Confidence 3567899999999999999999999999999 899999999999 8999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCcceeeechhhhhHHHHHHHHHHHHHHHHHHhhhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q 017989 80 VLGTSLFCGGIANLRKEQKYDRKQADVNSLLLLLALLCHMLPLLFKYAAASSDITAKATLQLSRASSIVMLIGYFAYLVF 159 (362)
Q Consensus 80 ilGl~~l~~~~~~~~~~~~~~~~~~~~~~~ll~is~l~l~lp~~~~~~~~~~~~~~~~~~~is~~~~~ill~~Y~~yl~~ 159 (362)
++|+|.++++.+ .++. .+++. ..++++.+.+ .+.. .| + ++|++|++++..|+.|+++
T Consensus 85 vlG~~~li~p~~---v~~~-~~~d~----~~~l~~~~~l-~~~~-----------~~--g-is~~~g~~Ll~~Y~~yl~~ 141 (320)
T 3v5u_A 85 VLGLSAIISPII---VDKN-LQKNI----LVYLLFVIFA-AVIG-----------ID--G-FSWIDGVVLLILFIIYLRW 141 (320)
T ss_dssp HHHHHHHHSCBC---CCHH-HHHHH----HHHHHHHHHH-HHHT-----------TT--C-BCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccc---ccHH-HHHHH----HHHHHHHHHH-HHHH-----------Hc--c-cHHHHHHHHHHHHHHHHHH
Confidence 999999997543 3222 23332 2222222221 2111 12 3 8899999999999999999
Q ss_pred hcccccccccccCCCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhccccc
Q 017989 160 QLWTHREFFEAQEDSEDDDDVTEETPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~a~~lv~~~~~i~~~~gi~~~~iG~~l~al~tsl 239 (362)
++++|++ +++ | ++++++.+.++.+..++++++++..++++++++++.+++.+|+||.++|+|++|++||+
T Consensus 142 ~~~~~~~-----~~~--~---~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtsl 211 (320)
T 3v5u_A 142 TVKNGSA-----EIE--E---NNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSL 211 (320)
T ss_dssp HHHHTBC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTH
T ss_pred HHHhccc-----ccc--c---ccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhcc
Confidence 9988864 111 1 11223456788899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCcchhHHHhhhHHHHHHHHHHHHHHHHHHhcCcceeeccchhHHHHHH-HHHHHHHHHhcCCeehHH
Q 017989 240 AEHAGAIIFAFKNKLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSLA-LAIIATAFTLQDGTSHYM 318 (362)
Q Consensus 240 PE~~~ai~aa~~g~~~~aig~~iGs~i~~~ll~lg~~~l~~~~~~~~~~l~~~~~~~~~l~-~s~l~~~~~~~~~~~~~~ 318 (362)
||.++++.+++||+.|+++||++|||++|+++++|+.+++. |++.+ .+|...+. .++++. ...+|+|++|+
T Consensus 212 PE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li~-----p~~~~--~~d~~~~l~~~~ll~-~~~~~~~i~~~ 283 (320)
T 3v5u_A 212 PELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFM-----HLPAE--NVQMAVLVIMSLLLY-LFAKYSKIGRW 283 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHHS-----CBCCC--HHHHHHHHHHHHHHH-HHHHHSCBSHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhhc-----cccch--HHHHHHHHHHHHHHH-HHHhCCcCcHH
Confidence 99999999999999999999999999999999999998885 33333 56665444 344433 36789999999
Q ss_pred HHHHHHHHHHH-HHHHHHHcCC
Q 017989 319 KGFVLLLCYFV-IGACFFVSNR 339 (362)
Q Consensus 319 ~g~~ll~~Y~~-y~~~~~~~~~ 339 (362)
||.+++++|++ |+...+..++
T Consensus 284 eG~~ll~~Y~~~y~~~~~~~~~ 305 (320)
T 3v5u_A 284 QGILFLALYIIAIASLRMGGGS 305 (320)
T ss_dssp HHHHHHHHHHHHHHHSCSSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999 9987665443
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.88 E-value=3.1e-22 Score=189.53 Aligned_cols=145 Identities=21% Similarity=0.202 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhccccchhHHHHHHHHHhCCcchhHHHhhhHHHHHHH
Q 017989 191 SGFAWLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAV 270 (362)
Q Consensus 191 ~~~~~l~~~~~~i~~~a~~lv~~~~~i~~~~gi~~~~iG~~l~al~tslPE~~~ai~aa~~g~~~~aig~~iGs~i~~~l 270 (362)
..+..++++++++..++++++++.+.+++++|+||.++|+|++|+|||+||+++++.++++|++|+++||++|||++|++
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nil 83 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIG 83 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeeccchhHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHHHHHHHHHHHHcCCC
Q 017989 271 FVVPLCVIISWIMGITMDLNFNLLETGSLALAIIATAFTLQDGTSHYMKGFVLLLCYFVIGACFFVSNRP 340 (362)
Q Consensus 271 l~lg~~~l~~~~~~~~~~l~~~~~~~~~l~~s~l~~~~~~~~~~~~~~~g~~ll~~Y~~y~~~~~~~~~~ 340 (362)
+++|+..++++. +++ ..-.++...+.++.++...+..|+ ++|++|.+|+..|+.|+.+.++..+.
T Consensus 84 lvlG~~~li~p~---~v~-~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~~ 148 (320)
T 3v5u_A 84 LVLGLSAIISPI---IVD-KNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGSA 148 (320)
T ss_dssp THHHHHHHHSCB---CCC-HHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHccc---ccc-HHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999998743 221 111234444444444344445677 99999999999999999998876654
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=18.44 E-value=5.2e+02 Score=23.16 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhh
Q 017989 190 WSGFAWLVGMTAIIALLSEFVVGTIEDASNSWGISVSFISIILL 233 (362)
Q Consensus 190 ~~~~~~l~~~~~~i~~~a~~lv~~~~~i~~~~gi~~~~iG~~l~ 233 (362)
++.+..+.....+..............+.+.+|+++..+|.+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 68 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQS 68 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44443333333333333344555577788999999999987743
No 4
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=16.27 E-value=1e+02 Score=25.70 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=22.2
Q ss_pred HHHhCC-cchhHHHhhhHHHHHH---H---HHHHHHHHH
Q 017989 248 FAFKNK-LDISLGVALGSATQIA---V---FVVPLCVII 279 (362)
Q Consensus 248 aa~~g~-~~~aig~~iGs~i~~~---l---l~lg~~~l~ 279 (362)
.+.||+ .|+|+|.++|++...+ + ++.|+..++
T Consensus 31 Fi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIgl~ 69 (174)
T 2oar_A 31 FLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 69 (174)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 345666 7999999999986432 2 467777644
No 5
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=14.38 E-value=4.5e+02 Score=20.56 Aligned_cols=9 Identities=0% Similarity=-0.212 Sum_probs=1.3
Q ss_pred hcCCeehHH
Q 017989 310 LQDGTSHYM 318 (362)
Q Consensus 310 ~~~~~~~~~ 318 (362)
+.+.++++.
T Consensus 78 ~lgE~ls~~ 86 (137)
T 2i68_A 78 FFGQRLDLP 86 (137)
T ss_dssp HHC------
T ss_pred HhCCCCCHH
Confidence 344455544
No 6
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=7.36 E-value=1.8e+02 Score=22.39 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=18.6
Q ss_pred hCC-cchhHHHhhhHHHHHH---H---HHHHHHHH
Q 017989 251 KNK-LDISLGVALGSATQIA---V---FVVPLCVI 278 (362)
Q Consensus 251 ~g~-~~~aig~~iGs~i~~~---l---l~lg~~~l 278 (362)
||+ .|+|+|.++|++...+ + ++.|+..+
T Consensus 31 rGNViDLAVgVIIG~AF~~IV~SlV~dIImPlIg~ 65 (114)
T 3hzq_A 31 KGNVLDLAIAVVMGAAFNKIICSLVENIIMPLIGK 65 (114)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 6999999999986432 2 45666543
No 7
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=7.29 E-value=1.2e+02 Score=16.85 Aligned_cols=20 Identities=5% Similarity=0.064 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCCCCCCC
Q 017989 326 CYFVIGACFFVSNRPLDSDP 345 (362)
Q Consensus 326 ~Y~~y~~~~~~~~~~~~~~~ 345 (362)
+|+++++.-++..+...+++
T Consensus 2 vYAa~mI~e~yrq~K~~r~q 21 (26)
T 3bxl_B 2 IYAAMMIMDYYKQSKVKKQR 21 (26)
T ss_pred hhHHHHHHHHHHHHHhhhhh
Confidence 57888888777766666554
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=5.25 E-value=5.9e+02 Score=15.17 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred cccCcceeeechhhhhHHHHHHHHHHHHHHHHHHhh
Q 017989 90 IANLRKEQKYDRKQADVNSLLLLLALLCHMLPLLFK 125 (362)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~ll~is~l~l~lp~~~~ 125 (362)
+++-+.+|......++.|..++++-++..+.+.-+.
T Consensus 1 ~~~Npn~q~VELNRTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 1 MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCCTTCCCBCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcceechhhHHHHHHHHHHHHHHhhhhcc
No 9
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=5.20 E-value=4.5e+02 Score=21.27 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHhhcCCCcchhhhhhhhccccchhHHHHHHHHHh
Q 017989 215 EDASNSWGISVSFISIILLPIVGNAAEHAGAIIFAFK 251 (362)
Q Consensus 215 ~~i~~~~gi~~~~iG~~l~al~tslPE~~~ai~aa~~ 251 (362)
+.+++..|+|+.+++..+..-.+--+|.+..+..+..
T Consensus 30 e~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~Lg 66 (156)
T 1dw9_A 30 AEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLD 66 (156)
T ss_dssp HHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhC
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=4.65 E-value=1.8e+03 Score=20.19 Aligned_cols=122 Identities=5% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccccCcceeeechhhhhHH-HHHHHHHHHHHHHHHHhhhhhccccchhhhhhHHHH
Q 017989 65 VKYSLLGSILSNLLLVLGTSLFCGGIANLRKEQKYDRKQADVN-SLLLLLALLCHMLPLLFKYAAASSDITAKATLQLSR 143 (362)
Q Consensus 65 a~g~iiGS~i~nlllilGl~~l~~~~~~~~~~~~~~~~~~~~~-~~ll~is~l~l~lp~~~~~~~~~~~~~~~~~~~is~ 143 (362)
...++.+....-.-....++.+.-..|.-+.++.+........ ..+..++.+..+....+...........+.......
T Consensus 369 ~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 448 (511)
T 4djk_A 369 IALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVEL 448 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCCCCc
Q 017989 144 ASSIVMLIGYFAYLVFQLWTHREFFEAQEDSEDDDDVTEETPV 186 (362)
Q Consensus 144 ~~~~ill~~Y~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (362)
..+.+++..-+.|..+..++++....++.+.++++.++.++++
T Consensus 449 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (511)
T 4djk_A 449 LVVSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAPKGH 491 (511)
T ss_dssp HHHHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccchhhhcccCccc
Done!