Query 017989
Match_columns 362
No_of_seqs 172 out of 1614
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 08:08:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017989.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017989hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 6.3 3.5E+02 0.026 17.6 4.9 9 153-161 33-41 (91)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.7 4.8E+02 0.035 20.6 6.0 16 318-333 57-72 (248)
3 d2nwwa1 f.49.1.1 (A:12-416) Pr 5.0 7.9E+02 0.058 20.3 10.9 30 210-241 271-300 (405)
4 d1vg0a1 c.3.1.3 (A:3-444,A:558 4.5 1.6E+02 0.012 26.4 2.1 22 233-254 10-31 (491)
5 d2rk5a1 d.145.1.4 (A:5-88) Put 4.4 1.3E+02 0.0093 19.5 1.0 24 26-49 17-48 (84)
6 d2o1ra1 d.145.1.4 (A:1-78) Hyp 4.3 1.2E+02 0.0087 19.5 0.8 25 25-49 16-48 (78)
7 d2oara1 f.16.1.1 (A:10-118) Ga 3.9 1.1E+02 0.0082 21.4 0.4 26 254-279 6-37 (109)
8 d1dwka1 a.35.1.4 (A:1-86) Cyan 3.7 4.1E+02 0.03 17.4 3.3 34 214-247 29-62 (86)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 3.2 4.2E+02 0.031 14.2 4.1 23 96-118 7-29 (37)
10 d2r2za1 d.145.1.4 (A:5-88) Put 3.1 2E+02 0.014 18.6 1.1 16 34-49 36-51 (84)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.27 E-value=3.5e+02 Score=17.58 Aligned_cols=9 Identities=11% Similarity=0.113 Sum_probs=3.2
Q ss_pred HHHHHHhhc
Q 017989 153 YFAYLVFQL 161 (362)
Q Consensus 153 Y~~yl~~~~ 161 (362)
+....++..
T Consensus 33 ~~~~~~~~~ 41 (91)
T d1fftb2 33 ILMAVGFAW 41 (91)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHhhhe
Confidence 333333333
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.73 E-value=4.8e+02 Score=20.60 Aligned_cols=16 Identities=6% Similarity=0.110 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 017989 318 MKGFVLLLCYFVIGAC 333 (362)
Q Consensus 318 ~~g~~ll~~Y~~y~~~ 333 (362)
.-|++++..|.+|-+.
T Consensus 57 ~PG~~~l~~Fvi~Pi~ 72 (248)
T d2r6gf1 57 YPGMAGMGLFVLFPLV 72 (248)
T ss_dssp HHHHHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHHhhe
Confidence 3688999888888644
No 3
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=5.03 E-value=7.9e+02 Score=20.27 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhcCCCcchhhhhhhhccccchh
Q 017989 210 VVGTIEDASNSWGISVSFISIILLPIVGNAAE 241 (362)
Q Consensus 210 lv~~~~~i~~~~gi~~~~iG~~l~al~tslPE 241 (362)
+-.+++. +|++|+|+...+.+ +|+|.+..-
T Consensus 271 lP~~~~~-~~~~gv~~~i~~fv-lPlgatin~ 300 (405)
T d2nwwa1 271 LPVTMRV-AKEMGISEGIYSFT-LPLGATINM 300 (405)
T ss_dssp HHHHHHH-HHTTTCCTTTHHHH-TTTTSSSCC
T ss_pred cHHHHHH-HHHcCCCcccccee-cccchheec
Confidence 3344554 47899999999966 698887743
No 4
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.52 E-value=1.6e+02 Score=26.42 Aligned_cols=22 Identities=14% Similarity=-0.059 Sum_probs=19.2
Q ss_pred hhccccchhHHHHHHHHHhCCc
Q 017989 233 LPIVGNAAEHAGAIIFAFKNKL 254 (362)
Q Consensus 233 ~al~tslPE~~~ai~aa~~g~~ 254 (362)
+=+||.+||.+.|...+|+|+.
T Consensus 10 II~GTGL~ESILAaAlSr~Gkk 31 (491)
T d1vg0a1 10 IVIGTGLPESIIAAACSRSGQR 31 (491)
T ss_dssp EEECCSHHHHHHHHHHHHTTCC
T ss_pred EEECCChHHHHHHHHHHhcCCE
Confidence 4579999999999999999963
No 5
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=4.37 E-value=1.3e+02 Score=19.50 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=16.8
Q ss_pred HHHHHHhC--------ChhHHHHHHHhhhHHH
Q 017989 26 EQIAFYTG--------PTVGGLLNATCGNATE 49 (362)
Q Consensus 26 e~l~~~~g--------~~~~g~~~~a~gs~pE 49 (362)
+.+.+++| ++++|.++--+|.+|+
T Consensus 17 ~dl~~~l~~~l~~~~~dTlgG~v~~~lg~iP~ 48 (84)
T d2rk5a1 17 NDFNEYFETDLESDNVDTIAGFYLTGVGTIPS 48 (84)
T ss_dssp HHHHHHHTCCCCCTTCCBHHHHHHHHHCSCCC
T ss_pred HHHHHHhCCCcccccchhHHHHHHHHhCcCCC
Confidence 44555555 4888888888877775
No 6
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=4.33 E-value=1.2e+02 Score=19.46 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=17.9
Q ss_pred HHHHHHHhC--------ChhHHHHHHHhhhHHH
Q 017989 25 TEQIAFYTG--------PTVGGLLNATCGNATE 49 (362)
Q Consensus 25 ~e~l~~~~g--------~~~~g~~~~a~gs~pE 49 (362)
.+.+.+++| ++++|.++--+|.+||
T Consensus 16 l~dl~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~ 48 (78)
T d2o1ra1 16 LRDLNKMFNWELDTEDARTFNGLILEHLEEIPD 48 (78)
T ss_dssp HHHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHHHCCCCCCccchHHHHHHHHHhCcCCC
Confidence 355666665 4889988888887775
No 7
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.86 E-value=1.1e+02 Score=21.42 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=18.7
Q ss_pred cchhHHHhhhHHHHHH------HHHHHHHHHH
Q 017989 254 LDISLGVALGSATQIA------VFVVPLCVII 279 (362)
Q Consensus 254 ~~~aig~~iGs~i~~~------ll~lg~~~l~ 279 (362)
.|+|+|.++|+....+ -++.|+...+
T Consensus 6 idLAVgvIiG~AF~~iV~slV~diimPlIg~i 37 (109)
T d2oara1 6 VDLAVAVVIGTAFTALVTKFTDSIITPLINRI 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHhhc
Confidence 6999999999986432 2567777655
No 8
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.67 E-value=4.1e+02 Score=17.38 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=26.8
Q ss_pred HHHHHhhcCCCcchhhhhhhhccccchhHHHHHH
Q 017989 214 IEDASNSWGISVSFISIILLPIVGNAAEHAGAII 247 (362)
Q Consensus 214 ~~~i~~~~gi~~~~iG~~l~al~tslPE~~~ai~ 247 (362)
-+.+++..|.|+.++...++.-.+--||-...+.
T Consensus 29 w~~IA~~iG~s~vwvtaa~lGQ~~l~~~~A~~l~ 62 (86)
T d1dwka1 29 FAEIADGTGLAEAFVTAALLGQQALPADAARLVG 62 (86)
T ss_dssp HHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4678899999999999988888766666665553
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.20 E-value=4.2e+02 Score=14.25 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=11.5
Q ss_pred eeeechhhhhHHHHHHHHHHHHH
Q 017989 96 EQKYDRKQADVNSLLLLLALLCH 118 (362)
Q Consensus 96 ~~~~~~~~~~~~~~ll~is~l~l 118 (362)
+|......++.|..++++.++..
T Consensus 7 ~q~veLNrtsLy~GlLlifvl~v 29 (37)
T d2axtl1 7 RQPVELNRTSLYLGLLLILVLAL 29 (37)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHHHHHHH
Confidence 34444444556666655554443
No 10
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=3.12 E-value=2e+02 Score=18.59 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=12.1
Q ss_pred ChhHHHHHHHhhhHHH
Q 017989 34 PTVGGLLNATCGNATE 49 (362)
Q Consensus 34 ~~~~g~~~~a~gs~pE 49 (362)
+++||.++--+|.+|+
T Consensus 36 ~TigG~i~~~lg~iP~ 51 (84)
T d2r2za1 36 DTMAGYLITALGTIPD 51 (84)
T ss_dssp CBHHHHHHHHHSSCCC
T ss_pred hhHHHHHHHHhCcCCC
Confidence 4788888877777775
Done!