BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017990
         (362 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
           GN=At1g04910 PE=1 SV=1
          Length = 519

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 166/340 (48%), Gaps = 53/340 (15%)

Query: 27  PKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQ 86
           P+++   +YL   +  +  +  ++L  F +RLA +    + QRLRCR N+HAL+F P I 
Sbjct: 181 PRDAPIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIM 240

Query: 87  ETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAH 146
           +    ++ +LR  +GH                             +++IHLRFE+DM+A 
Sbjct: 241 KLSESIVDKLRS-QGH-----------------------------FMSIHLRFEMDMLAF 270

Query: 147 SLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAA 206
           + C      EE++ L KYR+ +F          K     E R+ G CPLTPEE  L+L A
Sbjct: 271 AGCFDIFNPEEQKILRKYRKENF--------ADKRLIYNERRAIGKCPLTPEEVGLILRA 322

Query: 207 LGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQL--AAL 264
           + F+  T +++A  +++GG + +    +L+P L   +N  S    E     S  L  +A+
Sbjct: 323 MRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRL---DNHSSVDPSEELSATSQGLIGSAV 379

Query: 265 DFIGCTAANAFAMT-DSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAAIFVKNSTIEWK 323
           D++ C  ++ F  T D  S  ++ + G+R+YYG     TIRP+++ LA IF+     +  
Sbjct: 380 DYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRT--TIRPDRKALAPIFIAREKGKRA 437

Query: 324 VFEQRVRKAVRQTK----HIQSRSKGRSVYRYPRCKECMC 359
            FE+ VR+ + +T     H +   +      +P   EC C
Sbjct: 438 GFEEAVRRVMLKTNFGGPHKRVSPESFYTNSWP---ECFC 474


>sp|A1CQH8|UTP25_ASPCL U3 small nucleolar RNA-associated protein 25 OS=Aspergillus
           clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
           3887 / NRRL 1) GN=utp25 PE=3 SV=1
          Length = 693

 Score = 38.5 bits (88), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 247 SATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPN 306
            A+ L P KNFSS        G  A    AM+D   QL+  + GY+    G +  +    
Sbjct: 181 DASLLPPLKNFSSVKLKKKLDGPAADLIPAMSDDAQQLAPYIFGYQDVLHGARNTSNSAT 240

Query: 307 KRRLAAIFVKNSTIEW--KVFEQRVRKAVRQTKHIQSRSKG----RSVYRYPRCKECMCP 360
            R L AI   N  ++   +V +   R A  Q   +  R +G    + +Y  P  + C+  
Sbjct: 241 LRDLLAIHATNHVLKTRDRVLKNNARVAKEQDADLDLRDQGFTRPKVLYLLPTRQACVRV 300

Query: 361 TD 362
            D
Sbjct: 301 VD 302


>sp|Q53005|4HBCL_RHOPA 4-hydroxybenzoate--CoA/benzoate--CoA ligase OS=Rhodopseudomonas
           palustris (strain ATCC BAA-98 / CGA009) GN=hbaA PE=1
           SV=1
          Length = 539

 Score = 34.7 bits (78), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 17  IGSVVTDVDIPKESKPSFYLKNII--PIL----LRNGVVHLLGFGNRLAFDPIPFQLQRL 70
           +G ++  + + +E++ +  LK+ +  PIL    +R G+V +L    RL  D   + L+  
Sbjct: 46  VGPMLARLGVEQENRIALVLKDTVDFPILFWGAIRAGIVPVL-LNTRLTADQYRYLLEDS 104

Query: 71  RCRCNFHALQFAPKIQETGALL 92
           R R  F + +F P I+E  A L
Sbjct: 105 RSRVVFASSEFLPVIEEAAADL 126


>sp|Q3IMS0|G6PI_NATPD Probable glucose-6-phosphate isomerase OS=Natronomonas pharaonis
           (strain DSM 2160 / ATCC 35678) GN=pgi PE=3 SV=1
          Length = 428

 Score = 31.6 bits (70), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 25/102 (24%)

Query: 227 RRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAA----LDFIGCTAANAFAMTDSGS 282
           +R    N++ PY         A +LEPF  + +QL A     D +G T A A   TD  S
Sbjct: 241 QRGATTNAIVPY---------AEQLEPFAEWFAQLWAESLGKDGLGQTPARALGATDQHS 291

Query: 283 QLSSLVSGYRIYYGGGK---MPTIRPNKRRLAAIFVKNSTIE 321
           QL       ++Y  G K   +  +RP +R  A + +  + I+
Sbjct: 292 QL-------QLYRAGRKDKLVTLVRPRER--AGVDIPETDID 324


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,478,254
Number of Sequences: 539616
Number of extensions: 5440360
Number of successful extensions: 11455
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 11449
Number of HSP's gapped (non-prelim): 11
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)