BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017991
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 18/207 (8%)
Query: 149 VQGGGTINGMGQ--------EWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNS 200
+ G GTI+G G WW + ++ P I +K KN + N+ ++NS
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINS 172
Query: 201 QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNS 260
H+ F++ + P+ + NTDGI +S+ + + S + TGDD ++I
Sbjct: 173 PNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYK 232
Query: 261 SLIRIRNFAC-----GPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGG 315
RN + G GHG+SIGS ++ ++++ V ++ T NG+RIK+ +
Sbjct: 233 GRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDKSA 287
Query: 316 SGSATNIQFLDVLMKNVSNPIIIDQYY 342
+G +++ +V+MKNV+ PI+ID Y
Sbjct: 288 AGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 15/218 (6%)
Query: 130 WKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKN 189
WKG R + + +T+ G I+G G WW TN + P + H ++
Sbjct: 58 WKGPLIR---FGGKDLTVTMADGAVIDGDGSRWWDSKG----TNGGKTKPKFMYIHDVED 110
Query: 190 LKVQNLRVVNS--QQMHIAFTNCL--RVVISNLEVIAPAESPNTDGIHISASRGVEVKNS 245
+ + + N+ Q + + TN I N + NTDG IS S GV + +
Sbjct: 111 STFKGINIKNTPVQAISVQATNVHLNDFTIDNSDGDDNG-GHNTDGFDISESTGVYISGA 169
Query: 246 IVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQN 305
V DDCI+I S I C GHG+SIGS+G + + + ++ + + +SN+ N
Sbjct: 170 TVKNQDDCIAINSGES-ISFTGGTCSGGHGLSIGSVGGRDDNT-VKNVTISDSTVSNSAN 227
Query: 306 GVRIKTWQGGSGSATNIQFLDVLMKNVSN-PIIIDQYY 342
GVRIKT +G + I + ++ + +++ I+I+Q Y
Sbjct: 228 GVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDY 265
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 30/284 (10%)
Query: 67 FNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG-TIVAPK 125
F D A K +C+ IV AG T +D++G KS T+ G T K
Sbjct: 5 FTDAAAAIKG--KASCTSIILNGIVVPAGTT-----LDMTG-LKSGTTVTFQGKTTFGYK 56
Query: 126 DPDVWKGLNRRRWLYFNRVN-HLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITF 184
+ W+G + F+ N ++ G +I+ G WW +N + P
Sbjct: 57 E---WEG----PLISFSGTNININGASGHSIDCQGSRWWDS----KGSNGGKTKPKFFYA 105
Query: 185 HKCKNLKVQNLRVVNS--QQMHIAFTNCLRV--VISNLEVIAPAESPNTDGIHISASRGV 240
H K+ ++ L V+N+ Q I L V VI + A NTD + +S GV
Sbjct: 106 HSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGV 165
Query: 241 EVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLG-KSNSSVRIHDIMVYGAL 299
+ + V DDC++I + + I C GHG+SIGS+G +S+++V+ + + +
Sbjct: 166 YISGANVKNQDDCLAI-NSGTNITFTGGTCSGGHGLSIGSVGGRSDNTVKT--VTISNSK 222
Query: 300 ISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSN-PIIIDQYY 342
I N+ NGVRIKT G +GS + + + + + N++ I+I+Q Y
Sbjct: 223 IVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDY 266
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 17/200 (8%)
Query: 147 LTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCK-NLKVQNLRVVNSQQMHI 205
+T G I+G GQ +W K + +N + I K N K+ NL + N
Sbjct: 73 ITGASGHVIDGNGQAYWDG--KGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWPVHCF 130
Query: 206 AFTNCLRVVISNLEVIAPA-ESPN-----------TDGIHISASRGVEVKNSIVGTGDDC 253
T ++ IS L + A + PN TDG IS+S V + N+ V DDC
Sbjct: 131 DITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDC 190
Query: 254 ISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQ 313
+++ ++++ + N C GHG+SIGS+G + +V + + + + N+QNG RIK+
Sbjct: 191 VAVTSGTNIV-VSNMYCSGGHGLSIGSVGGKSDNV-VDGVQFLSSQVVNSQNGCRIKSNS 248
Query: 314 GGSGSATNIQFLDVLMKNVS 333
G +G+ N+ + ++ + N+S
Sbjct: 249 GATGTINNVTYQNIALTNIS 268
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 11/204 (5%)
Query: 146 HLTVQG--GGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQN--LRVVNSQ 201
H+TV G G IN G WW P + L ++N L + Q
Sbjct: 96 HITVTGASGHLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSVQ 155
Query: 202 QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSS 261
I FT+ V I+N + NTD + S GV + V DDC++ V +
Sbjct: 156 ANDITFTD---VTINNADGDTQG-GHNTDAFDVGNSVGVNIIKPWVHNQDDCLA-VNSGE 210
Query: 262 LIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATN 321
I C GHG+SIGS+G +++V + ++ + + +SN++N VRIKT G +GS +
Sbjct: 211 NIWFTGGTCIGGHGLSIGSVGDRSNNV-VKNVTIEHSTVSNSENAVRIKTISGATGSVSE 269
Query: 322 IQFLDVLMKNVSN-PIIIDQYYCD 344
I + +++M +S+ ++I Q Y D
Sbjct: 270 ITYSNIVMSGISDYGVVIQQDYED 293
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 17/208 (8%)
Query: 147 LTVQG--GGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNS--QQ 202
LT+ G G +ING G WW N + P H N + L++VNS Q
Sbjct: 74 LTITGASGHSINGDGSRWWDGEGG----NGGKTKPKFFAAHSLTNSVISGLKIVNSPVQV 129
Query: 203 MHIAFTNCLR---VVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGN 259
+A ++ L + I N + NTD I S V + + V DDC++ V +
Sbjct: 130 FSVAGSDYLTLKDITIDNSDG-DDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVA-VNS 187
Query: 260 SSLIRIRNFACGPGHGISIGSLG-KSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGS 318
I C GHG+SIGS+G +S+++V+ ++ + I N+ NGVRIKT +GS
Sbjct: 188 GENIYFSGGYCSGGHGLSIGSVGGRSDNTVK--NVTFVDSTIINSDNGVRIKTNIDTTGS 245
Query: 319 ATNIQFLDVLMKNVSN-PIIIDQYYCDS 345
+++ + D+ + +++ I++ Q Y D+
Sbjct: 246 VSDVTYKDITLTSIAKYGIVVQQNYGDT 273
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 140/342 (40%), Gaps = 68/342 (19%)
Query: 53 RVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSR 112
R + + DFGA+GDG D +E+F A ++ S +++ G FL PI + KS
Sbjct: 26 REVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEG-VFLTGPIHL----KSN 79
Query: 113 LTLEISGTIVAPKDPDVW--------KGL---NRRRWLYFNRVNHLTVQGGGTINGMG-- 159
+ L + GTI DP+ + +G+ N +Y ++ + G G ++G
Sbjct: 80 IELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADN 139
Query: 160 QEWWSRSCKIN----------------------TTNPCRHA---------PTAITFHKCK 188
+ WW K + P P+ + F++C+
Sbjct: 140 EHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCR 199
Query: 189 NLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVG 248
N+ V+ ++++NS I V+I N+E+ + PN DGI + + + ++
Sbjct: 200 NVLVEGVKIINSPMWCIHPVLSENVIIRNIEI--SSTGPNNDGIDPESCKYMLIEKCRFD 257
Query: 249 TGDDCISI----------VGNSS---LIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMV 295
TGDD + I +G S L+R HG G + S S + +++
Sbjct: 258 TGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHG---GLVIGSEMSGGVRNVVA 314
Query: 296 YGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPII 337
+ N + +R+KT G NI F+D + NVS +I
Sbjct: 315 RNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVI 356
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 7/119 (5%)
Query: 228 NTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSS 287
NTDG +SA+ V ++N IV DDCI+I + + IR N C GHGISIGS+ +
Sbjct: 151 NTDGFDVSANN-VTIQNCIVKNQDDCIAI-NDGNNIRFENNQCSGGHGISIGSIA---TG 205
Query: 288 VRIHDIMVYGALISNTQNGVRIKTWQ-GGSGSATNIQFLDVLMKNVSN-PIIIDQYYCD 344
+ ++++ G ++ + GVRIK + S S + + + + ++ ++I Q Y D
Sbjct: 206 KHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVLISQSYPD 264
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 214 VISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISI-VGNSSLIRIRNFACGP 272
V++N + ++ N DGI S+ V V N+ TGDDCI+ G + + G
Sbjct: 365 VVANGLIHQTYDANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGA 424
Query: 273 ---------GHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQ 323
GHG + S++ I DI+ ++ T G+R K+ G A N+
Sbjct: 425 WLFNNYFRMGHGAIVTG---SHTGAWIEDILAENNVMYLTDIGLRAKSTSTIGGGARNVT 481
Query: 324 FLDVLMKNVSNPIIIDQY-YCDS 345
F + M++++ +++ Y DS
Sbjct: 482 FRNNAMRDLAKQVMVMTLDYADS 504
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 189 NLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISAS----RGVEVKN 244
+ V ++ +V++ H C + N+ + E DGI + S VEV N
Sbjct: 137 HFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEG-GLDGIDVWGSNIWVHDVEVTN 195
Query: 245 SIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQ 304
D+C+++ ++ I + + C G ++GSLG + + DI VY + + +
Sbjct: 196 K-----DECVTVKSPANNILVESIYCNWSGGCAMGSLG---ADTDVTDI-VYRNVYTWSS 246
Query: 305 NGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYY 342
N + + GGSG+ +N+ + + + + ID Y+
Sbjct: 247 NQMYMIKSNGGSGTVSNVLLENFIGHGNAYSLDIDGYW 284
>pdb|2VBK|A Chain A, Native Tailspike Protein Of Bacteriophage Sf6
pdb|2VBM|A Chain A, Tailspike Protein Of Bacteriophage Sf6 Complexed With
Tetrasaccharide
Length = 514
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 39 LPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSA 94
LP + K+K I + DFG DG D+ +A NA S P+ ++ A
Sbjct: 36 LPKAVLRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPA 91
>pdb|2VBE|A Chain A, Tailspike Protein Of Bacteriophage Sf6
Length = 514
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 39 LPHSGSNGTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSA 94
LP + K+K I + DFG DG D+ +A NA S P+ ++ A
Sbjct: 36 LPKAVLRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPA 91
>pdb|3EQN|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQN|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a)
pdb|3EQO|A Chain A, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
pdb|3EQO|B Chain B, Crystal Structure Of Beta-1,3-Glucanase From Phanerochaete
Chrysosporium (Lam55a) Gluconolactone Complex
Length = 758
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 61 GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGT 120
GAKGDG DDT+A N + K + I F AG + I I P +++ E+
Sbjct: 407 GAKGDGHTDDTQAIKNVFAK---YAGCKIIFFDAGTYIVTDTIQI--PAGTQIVGEVWSV 461
Query: 121 IVA 123
I+
Sbjct: 462 IMG 464
>pdb|1OGM|X Chain X, Dex49a From Penicillium Minioluteum
pdb|1OGO|X Chain X, Dex49a From Penicillium Minioluteum Complex With
Isomaltose
Length = 574
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 162 WWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVI 221
WW S +INT P + + VQ + + + H +F N +
Sbjct: 16 WWHDSGEINTQTPVQPG----NVRQSHKYSVQ-VSLAGTNNFHDSFVYESIPRNGNGRIY 70
Query: 222 APAESPNTDGIHISASRGVEVKNSI 246
AP + PN++ + S G+ ++ SI
Sbjct: 71 APTDPPNSNTLDSSVDDGISIEPSI 95
>pdb|1DX4|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Phenylmethylamino)-1,2,3,4-Tetrahydroacridine
pdb|1QO9|A Chain A, Native Acetylcholinesterase From Drosophila Melanogaster
pdb|1QON|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Iodobenzylamino)-1,2,3,4-Tetrahydroacridine
Length = 585
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 239 GVEVKNSIVGTGDDCISI-VGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYG 297
G E+ N +DC+ I V + R+R HG N D +++
Sbjct: 79 GEEIWNPNTNVSEDCLYINVWAPAKARLR-------HGRGANGGEHPNGKQADTDHLIHN 131
Query: 298 ALISNTQNGVRIKTWQGGSGSATNIQFLDV----LMKNVSNPIIIDQYY 342
NT NG+ I W G G T LD+ +M V N I+ Y
Sbjct: 132 GNPQNTTNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQY 180
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene
Product 12 N- Terminal Fragment In Complex With Cobalt
Ions
Length = 609
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 55 IFVGDFGAKGDGFNDDTEAFANAWKKACSFP 85
+ V +GAKGDG DD AF A + FP
Sbjct: 23 VSVKTYGAKGDGVTDDIRAFEKAIESG--FP 51
>pdb|4GIP|D Chain D, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
pdb|4GIP|E Chain E, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
pdb|4GIP|F Chain F, Structure Of The Cleavage-Activated Prefusion Form Of The
Parainfluenza Virus 5 (Piv5) Fusion Protein
Length = 409
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 173 NPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAE-SPNTDG 231
P T I +KC +L++ NLR +Q ++ + + +++ S + I P + S N
Sbjct: 294 QPSSSPVTVIDMYKCVSLQLDNLRFTITQLANVTYNSTIKLESSQILSIDPLDISQNLAA 353
Query: 232 IHISASRGVE 241
++ S S ++
Sbjct: 354 VNKSLSDALQ 363
>pdb|2B9B|A Chain A, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
pdb|2B9B|B Chain B, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
pdb|2B9B|C Chain C, Structure Of The Parainfluenza Virus 5 F Protein In Its
Metastable, Pre-Fusion Conformation
Length = 497
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 173 NPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAE-SPNTDG 231
P T I +KC +L++ NLR +Q ++ + + +++ S + I P + S N
Sbjct: 375 QPSSSPVTVIDMYKCVSLQLDNLRFTITQLANVTYNSTIKLESSQILSIDPLDISQNLAA 434
Query: 232 IHISASRGVE 241
++ S S ++
Sbjct: 435 VNKSLSDALQ 444
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 55 IFVGDFGAKGDGFNDDTEAFANAWKKACSFP 85
+ V +GAKGDG DD AF A + FP
Sbjct: 23 VSVKTYGAKGDGVTDDIRAFEKAIESG--FP 51
>pdb|3TBF|A Chain A, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|B Chain B, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|C Chain C, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|D Chain D, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|E Chain E, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|F Chain F, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|G Chain G, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis.
pdb|3TBF|H Chain H, C-Terminal Domain Of Glucosamine-Fructose-6-Phosphate
Aminotransferase From Francisella Tularensis
Length = 372
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 34/76 (44%)
Query: 250 GDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRI 309
G CI V NSSL+R + A G+ IG + ++ + ++ +I+ +N +
Sbjct: 131 GSXCICNVPNSSLVRESDIAFXTKAGVEIGVASTKAFTTQLVALAIFTLVIAKLKNSLTD 190
Query: 310 KTWQGGSGSATNIQFL 325
+ + NI+ L
Sbjct: 191 QQIAKYTEELKNIRAL 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,224,993
Number of Sequences: 62578
Number of extensions: 466611
Number of successful extensions: 938
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 29
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)