Query 017991
Match_columns 362
No_of_seqs 241 out of 1655
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:12:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 1.4E-72 3E-77 545.3 41.0 311 49-359 47-357 (443)
2 PLN02218 polygalacturonase ADP 100.0 1.4E-71 2.9E-76 535.9 38.9 309 47-358 60-370 (431)
3 PLN02155 polygalacturonase 100.0 6.2E-68 1.4E-72 505.1 39.6 304 49-359 22-326 (394)
4 PLN03010 polygalacturonase 100.0 1.2E-67 2.7E-72 504.0 37.8 293 51-359 43-337 (409)
5 PLN03003 Probable polygalactur 100.0 3.8E-68 8.2E-73 510.1 32.4 298 51-359 20-320 (456)
6 PLN02188 polygalacturonase/gly 100.0 1.1E-65 2.4E-70 491.8 35.0 303 49-358 31-336 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 4.4E-51 9.5E-56 385.5 23.9 270 83-359 2-271 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 1.3E-43 2.7E-48 345.0 27.7 280 48-339 76-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 5.6E-26 1.2E-30 214.9 22.8 250 47-331 30-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 1.4E-21 3E-26 175.2 18.9 208 54-307 1-224 (225)
11 PLN02793 Probable polygalactur 99.8 8.2E-19 1.8E-23 170.7 27.7 216 110-357 142-393 (443)
12 PLN03003 Probable polygalactur 99.8 1.3E-18 2.8E-23 168.1 26.5 222 103-358 107-357 (456)
13 PLN02188 polygalacturonase/gly 99.8 2.7E-18 5.8E-23 165.2 27.2 219 110-358 121-374 (404)
14 PLN02218 polygalacturonase ADP 99.8 2.8E-18 6.1E-23 166.2 24.7 210 110-351 155-400 (431)
15 PLN02155 polygalacturonase 99.8 1.4E-17 3E-22 159.6 26.2 221 103-357 109-362 (394)
16 PF00295 Glyco_hydro_28: Glyco 99.8 2.8E-18 6.2E-23 162.2 20.9 194 135-359 91-309 (326)
17 PLN03010 polygalacturonase 99.8 3.4E-17 7.3E-22 157.3 27.0 204 110-351 138-366 (409)
18 TIGR03805 beta_helix_1 paralle 99.7 5.1E-16 1.1E-20 145.7 21.8 228 74-341 1-252 (314)
19 PF03718 Glyco_hydro_49: Glyco 99.7 9.1E-15 2E-19 140.3 23.5 221 87-334 232-491 (582)
20 COG5434 PGU1 Endopygalactoruna 99.3 1.3E-10 2.8E-15 114.6 15.7 141 137-304 239-399 (542)
21 TIGR03805 beta_helix_1 paralle 99.2 4.5E-09 9.7E-14 98.9 23.9 162 145-332 32-203 (314)
22 PF12541 DUF3737: Protein of u 98.9 1.9E-08 4.1E-13 89.2 12.9 31 236-270 154-184 (277)
23 PF13229 Beta_helix: Right han 98.8 4.9E-08 1.1E-12 81.8 11.6 138 182-338 3-144 (158)
24 TIGR03808 RR_plus_rpt_1 twin-a 98.7 4.1E-07 8.8E-12 87.4 15.8 141 181-334 108-285 (455)
25 PF07602 DUF1565: Protein of u 98.7 1.3E-06 2.9E-11 78.4 17.7 193 71-334 15-224 (246)
26 PF12541 DUF3737: Protein of u 98.7 3.5E-07 7.7E-12 81.2 12.6 99 184-309 133-231 (277)
27 PF03718 Glyco_hydro_49: Glyco 98.6 9E-06 2E-10 79.2 22.2 212 87-330 256-513 (582)
28 PF13229 Beta_helix: Right han 98.6 1.1E-06 2.4E-11 73.5 14.1 129 181-328 25-157 (158)
29 PF05048 NosD: Periplasmic cop 98.6 2.8E-06 6.2E-11 76.8 17.3 113 181-309 37-151 (236)
30 PLN02634 probable pectinestera 98.6 3.4E-05 7.3E-10 73.0 24.5 132 185-332 146-291 (359)
31 COG3866 PelB Pectate lyase [Ca 98.6 1.3E-05 2.9E-10 72.6 20.3 62 139-222 95-165 (345)
32 PF14592 Chondroitinas_B: Chon 98.6 4.4E-06 9.6E-11 80.2 18.3 26 70-99 3-28 (425)
33 PF05048 NosD: Periplasmic cop 98.5 6.2E-06 1.3E-10 74.6 15.8 85 181-272 59-143 (236)
34 PLN02480 Probable pectinestera 98.5 6.3E-05 1.4E-09 71.1 22.2 131 184-332 128-277 (343)
35 PLN02176 putative pectinestera 98.4 0.00024 5.2E-09 67.0 25.6 199 70-332 50-271 (340)
36 smart00656 Amb_all Amb_all dom 98.4 6.6E-06 1.4E-10 71.8 13.8 100 203-303 32-144 (190)
37 PRK10123 wcaM putative colanic 98.4 1.2E-05 2.7E-10 72.2 14.9 206 49-304 29-259 (464)
38 COG3866 PelB Pectate lyase [Ca 98.4 7.7E-06 1.7E-10 74.1 13.6 156 182-337 95-281 (345)
39 PLN02497 probable pectinestera 98.4 0.00016 3.4E-09 68.0 22.5 132 185-332 112-264 (331)
40 PLN02682 pectinesterase family 98.4 8.7E-05 1.9E-09 70.6 20.7 213 69-335 80-308 (369)
41 COG3420 NosD Nitrous oxidase a 98.3 4.9E-05 1.1E-09 69.9 17.5 86 185-272 104-192 (408)
42 PLN02665 pectinesterase family 98.3 0.00028 6.1E-09 67.2 23.0 137 182-332 148-298 (366)
43 PLN02170 probable pectinestera 98.3 0.00026 5.6E-09 70.3 22.2 206 69-332 235-452 (529)
44 PRK10531 acyl-CoA thioesterase 98.2 0.0012 2.6E-08 63.8 25.2 144 182-332 200-376 (422)
45 PLN02773 pectinesterase 98.2 0.00037 8.1E-09 65.2 20.8 136 183-332 97-240 (317)
46 PLN02304 probable pectinestera 98.2 0.001 2.2E-08 63.5 23.8 205 69-332 85-312 (379)
47 PLN02916 pectinesterase family 98.1 0.00052 1.1E-08 67.9 21.2 212 69-335 197-429 (502)
48 PLN02671 pectinesterase 98.1 0.00039 8.5E-09 65.9 19.5 133 183-332 149-295 (359)
49 PLN02708 Probable pectinestera 98.1 0.00052 1.1E-08 69.1 21.4 215 69-335 251-490 (553)
50 smart00656 Amb_all Amb_all dom 98.1 0.00017 3.8E-09 62.9 15.7 119 181-309 33-173 (190)
51 PF12708 Pectate_lyase_3: Pect 98.1 0.00024 5.3E-09 63.1 17.0 123 190-336 94-224 (225)
52 PLN02713 Probable pectinestera 98.1 0.00097 2.1E-08 67.4 22.5 212 69-335 260-492 (566)
53 PF00544 Pec_lyase_C: Pectate 98.1 4.6E-05 1E-09 67.1 11.5 94 209-303 44-158 (200)
54 PLN02506 putative pectinestera 98.1 0.00047 1E-08 69.1 19.9 206 69-332 242-459 (537)
55 PLN02995 Probable pectinestera 98.0 0.0008 1.7E-08 67.5 20.5 214 69-336 233-465 (539)
56 PLN02745 Putative pectinestera 98.0 0.0016 3.5E-08 66.1 21.7 211 69-335 295-524 (596)
57 PLN02488 probable pectinestera 98.0 0.003 6.4E-08 62.4 22.6 209 69-332 207-433 (509)
58 PLN02468 putative pectinestera 98.0 0.0011 2.5E-08 66.9 20.1 212 69-335 268-493 (565)
59 PLN02484 probable pectinestera 97.9 0.0012 2.7E-08 66.9 20.2 214 69-335 282-512 (587)
60 PLN02201 probable pectinestera 97.9 0.0022 4.7E-08 64.0 21.4 212 69-335 216-445 (520)
61 PLN02314 pectinesterase 97.9 0.0015 3.2E-08 66.4 20.6 210 70-335 289-512 (586)
62 PLN02301 pectinesterase/pectin 97.9 0.0023 5.1E-08 64.3 21.7 212 69-335 246-475 (548)
63 PLN02933 Probable pectinestera 97.9 0.0025 5.5E-08 63.6 21.6 213 69-335 228-457 (530)
64 PLN02432 putative pectinestera 97.9 0.0033 7E-08 58.3 20.8 132 184-332 90-230 (293)
65 PLN02313 Pectinesterase/pectin 97.9 0.0019 4.2E-08 65.5 20.5 210 69-332 285-511 (587)
66 PLN03043 Probable pectinestera 97.9 0.0025 5.3E-08 64.2 20.9 213 69-336 233-466 (538)
67 PF01696 Adeno_E1B_55K: Adenov 97.9 0.0027 5.8E-08 60.4 19.7 152 56-273 45-200 (386)
68 PF01095 Pectinesterase: Pecti 97.8 0.0006 1.3E-08 63.7 14.4 207 69-333 10-237 (298)
69 PLN02990 Probable pectinestera 97.8 0.0041 8.9E-08 63.0 21.2 213 69-335 269-499 (572)
70 PLN02416 probable pectinestera 97.8 0.0027 5.8E-08 63.9 19.7 209 69-332 240-466 (541)
71 PLN02217 probable pectinestera 97.8 0.0032 7E-08 64.5 20.2 213 69-335 260-489 (670)
72 PLN02197 pectinesterase 97.7 0.0044 9.5E-08 62.8 19.9 211 69-332 285-514 (588)
73 PF00544 Pec_lyase_C: Pectate 97.6 0.00088 1.9E-08 59.0 10.9 119 182-310 39-188 (200)
74 PF12218 End_N_terminal: N ter 97.3 0.00029 6.3E-09 48.1 3.3 38 62-103 1-38 (67)
75 COG4677 PemB Pectin methyleste 97.0 0.026 5.6E-07 52.1 13.6 137 184-331 185-350 (405)
76 COG3420 NosD Nitrous oxidase a 96.5 0.06 1.3E-06 50.1 12.4 18 294-311 275-292 (408)
77 PF03211 Pectate_lyase: Pectat 95.8 1.2 2.6E-05 39.3 17.1 133 187-326 60-194 (215)
78 PLN02480 Probable pectinestera 95.7 0.82 1.8E-05 43.6 16.7 133 207-360 128-272 (343)
79 PF14592 Chondroitinas_B: Chon 95.5 0.74 1.6E-05 44.8 15.6 22 318-339 308-329 (425)
80 PRK10123 wcaM putative colanic 95.0 1.9 4.1E-05 39.5 15.5 19 87-105 71-90 (464)
81 TIGR03804 para_beta_helix para 94.4 0.071 1.5E-06 34.4 3.9 38 206-248 3-40 (44)
82 PF03211 Pectate_lyase: Pectat 94.4 1.1 2.4E-05 39.5 12.3 119 211-346 61-185 (215)
83 TIGR03804 para_beta_helix para 94.2 0.073 1.6E-06 34.3 3.6 40 231-271 1-40 (44)
84 PF01095 Pectinesterase: Pecti 93.9 0.96 2.1E-05 42.3 11.7 134 207-360 83-231 (298)
85 PLN02698 Probable pectinestera 93.8 2 4.4E-05 43.1 14.5 142 184-335 266-422 (497)
86 PF08480 Disaggr_assoc: Disagg 93.8 1.3 2.8E-05 37.9 11.0 68 237-304 33-110 (198)
87 PLN02197 pectinesterase 93.7 2.2 4.9E-05 43.6 14.8 138 207-360 360-509 (588)
88 PF07602 DUF1565: Protein of u 93.3 0.84 1.8E-05 41.3 9.9 103 206-339 92-195 (246)
89 PLN02432 putative pectinestera 93.1 3.2 7E-05 38.7 13.7 111 208-332 91-205 (293)
90 PF01696 Adeno_E1B_55K: Adenov 92.1 9.7 0.00021 36.7 15.7 86 207-307 117-204 (386)
91 PRK10531 acyl-CoA thioesterase 91.8 7.8 0.00017 37.9 15.0 118 206-333 201-337 (422)
92 PLN02773 pectinesterase 91.5 13 0.00027 35.2 17.5 47 70-119 16-63 (317)
93 PF09251 PhageP22-tail: Salmon 90.6 11 0.00024 36.6 14.2 57 261-332 311-367 (549)
94 PLN02671 pectinesterase 90.3 11 0.00023 36.2 14.2 47 69-119 69-117 (359)
95 PLN02698 Probable pectinestera 87.7 26 0.00056 35.4 15.4 114 207-333 266-386 (497)
96 PF08480 Disaggr_assoc: Disagg 80.6 6.8 0.00015 33.6 6.6 91 238-333 2-110 (198)
97 KOG1777 Putative Zn-finger pro 73.9 90 0.002 30.7 12.8 41 73-118 34-74 (625)
98 PLN02468 putative pectinestera 72.9 50 0.0011 33.9 11.7 138 207-360 341-485 (565)
99 PLN02634 probable pectinestera 71.3 92 0.002 30.0 12.4 47 69-119 66-114 (359)
100 PLN02170 probable pectinestera 70.2 78 0.0017 32.1 12.1 135 205-360 307-447 (529)
101 PLN02708 Probable pectinestera 70.1 83 0.0018 32.2 12.5 139 207-361 326-483 (553)
102 PLN02176 putative pectinestera 67.5 1.1E+02 0.0023 29.4 11.9 41 238-280 156-196 (340)
103 PLN02217 probable pectinestera 67.5 69 0.0015 33.5 11.4 138 207-360 333-481 (670)
104 PLN02745 Putative pectinestera 66.3 89 0.0019 32.3 11.9 138 207-360 368-516 (596)
105 PLN02682 pectinesterase family 65.1 1.4E+02 0.003 28.9 12.4 112 207-332 159-280 (369)
106 PLN02995 Probable pectinestera 64.1 78 0.0017 32.3 10.9 138 207-360 308-456 (539)
107 PLN02304 probable pectinestera 63.3 1.1E+02 0.0025 29.6 11.3 112 208-332 159-287 (379)
108 PLN02916 pectinesterase family 62.5 1.7E+02 0.0037 29.5 12.8 139 207-361 273-422 (502)
109 PF07172 GRP: Glycine rich pro 62.4 8.2 0.00018 29.5 2.8 6 1-6 1-6 (95)
110 PLN02933 Probable pectinestera 62.1 1.5E+02 0.0033 30.1 12.4 139 206-360 300-449 (530)
111 PLN02665 pectinesterase family 62.1 1.4E+02 0.0029 29.0 11.6 202 70-302 79-297 (366)
112 smart00710 PbH1 Parallel beta- 60.8 9 0.0002 20.4 2.2 19 292-310 3-22 (26)
113 PLN02201 probable pectinestera 59.5 1.5E+02 0.0033 30.1 11.9 138 207-360 289-437 (520)
114 PLN02506 putative pectinestera 59.1 1.3E+02 0.0027 30.8 11.4 134 206-360 314-454 (537)
115 PLN02416 probable pectinestera 58.7 1.1E+02 0.0023 31.4 10.7 115 206-333 312-433 (541)
116 PLN02990 Probable pectinestera 57.2 1.9E+02 0.0041 29.8 12.3 138 207-360 343-491 (572)
117 PLN02314 pectinesterase 56.3 1.7E+02 0.0036 30.3 11.8 137 206-360 360-504 (586)
118 PRK09752 adhesin; Provisional 55.8 3.4E+02 0.0074 30.5 16.4 60 212-271 122-190 (1250)
119 PLN02301 pectinesterase/pectin 54.5 2E+02 0.0043 29.5 11.8 139 206-360 318-467 (548)
120 PLN02497 probable pectinestera 53.6 2.1E+02 0.0045 27.3 11.6 47 69-119 42-90 (331)
121 PLN02484 probable pectinestera 53.2 2.5E+02 0.0055 29.0 12.5 139 206-360 355-504 (587)
122 PLN02488 probable pectinestera 52.7 2.6E+02 0.0057 28.3 12.9 138 207-360 280-428 (509)
123 smart00722 CASH Domain present 51.8 54 0.0012 26.0 6.3 68 185-255 73-144 (146)
124 PLN02313 Pectinesterase/pectin 49.7 1.8E+02 0.0038 30.2 10.8 138 207-360 358-506 (587)
125 PRK09752 adhesin; Provisional 49.5 3.7E+02 0.0079 30.3 13.3 84 212-300 97-194 (1250)
126 COG4677 PemB Pectin methyleste 45.5 75 0.0016 30.0 6.6 82 210-301 188-284 (405)
127 PLN03043 Probable pectinestera 43.0 3.4E+02 0.0073 27.8 11.5 139 206-360 308-457 (538)
128 PLN02713 Probable pectinestera 39.9 4.1E+02 0.009 27.4 11.6 138 207-360 336-484 (566)
129 PF11429 Colicin_D: Colicin D; 35.3 38 0.00083 25.7 2.6 38 58-100 10-48 (92)
130 smart00722 CASH Domain present 34.4 2.3E+02 0.0049 22.2 10.1 17 182-199 40-56 (146)
131 PRK12788 flgH flagellar basal 33.9 21 0.00046 32.1 1.2 19 1-20 1-19 (234)
132 PRK13791 lysozyme inhibitor; P 30.1 34 0.00074 27.1 1.7 17 1-17 1-17 (113)
133 COG3054 Predicted transcriptio 30.0 48 0.001 27.6 2.5 12 92-104 89-100 (184)
134 PRK13883 conjugal transfer pro 29.4 89 0.0019 26.1 4.1 23 69-91 60-82 (151)
135 PRK02919 oxaloacetate decarbox 27.4 2.5E+02 0.0054 20.8 5.7 12 70-81 66-77 (82)
136 PF15284 PAGK: Phage-encoded v 26.7 51 0.0011 22.8 1.8 18 1-18 1-18 (61)
137 PF10162 G8: G8 domain; Inter 25.7 2.8E+02 0.006 22.1 6.4 33 87-126 12-46 (125)
138 COG0336 TrmD tRNA-(guanine-N1) 24.9 83 0.0018 28.2 3.3 47 53-100 34-94 (240)
139 COG3417 FlgN Collagen-binding 24.4 48 0.0011 28.7 1.7 22 1-22 1-22 (200)
140 PRK09718 hypothetical protein; 24.3 2.5E+02 0.0055 28.2 6.8 13 260-272 167-179 (512)
141 PF05342 Peptidase_M26_N: M26 23.8 1.8E+02 0.0039 26.4 5.3 8 93-101 154-161 (250)
142 TIGR00247 conserved hypothetic 23.7 2.8E+02 0.0061 26.4 7.0 9 92-101 82-90 (342)
143 PF02402 Lysis_col: Lysis prot 23.5 66 0.0014 20.7 1.7 21 1-22 1-21 (46)
144 PF11714 Inhibitor_I53: Thromb 22.2 2.3E+02 0.005 20.2 4.4 9 4-12 1-9 (78)
145 PF07157 DNA_circ_N: DNA circu 21.6 1.1E+02 0.0023 23.4 2.9 40 50-94 46-85 (93)
146 TIGR01781 Trep_dent_lipo Trepo 20.7 62 0.0013 30.4 1.7 25 228-252 259-283 (412)
147 TIGR01195 oadG_fam sodium pump 20.4 3.6E+02 0.0078 19.8 5.6 13 69-81 65-77 (82)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.4e-72 Score=545.28 Aligned_cols=311 Identities=74% Similarity=1.252 Sum_probs=290.8
Q ss_pred CCCCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCC
Q 017991 49 SKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPD 128 (362)
Q Consensus 49 ~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~ 128 (362)
+..+++++|++|||+|||++|||+|||+||++||++.+|++|+||+|++|++++|.|.|||+++++|+++|+|.++.++.
T Consensus 47 ~~~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~ 126 (443)
T PLN02793 47 PRSERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPD 126 (443)
T ss_pred CCCceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChH
Confidence 33568999999999999999999999999997888888899999999669999999999999999999999999999999
Q ss_pred CcCCCCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEe
Q 017991 129 VWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFT 208 (362)
Q Consensus 129 ~~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~ 208 (362)
.|+....+.|+++.+.+|++|+|.|+|||+|..||...++.+...++..||++|.|.+|+|++|++++++|+|.|++++.
T Consensus 127 ~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~ 206 (443)
T PLN02793 127 VWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFT 206 (443)
T ss_pred HccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEE
Confidence 99876677899999999999999999999999999865444444455679999999999999999999999999999999
Q ss_pred ceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCCCcc
Q 017991 209 NCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSV 288 (362)
Q Consensus 209 ~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~ 288 (362)
.|+||+|+|++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|.++||++|||+|+.++.+
T Consensus 207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~ 286 (443)
T PLN02793 207 NCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWS 286 (443)
T ss_pred ccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999887778
Q ss_pred cEEeEEEEcEEEeCCceeEEEEeeCCCCceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeee
Q 017991 289 RIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYAT 359 (362)
Q Consensus 289 ~v~ni~i~n~~i~~~~~gi~i~~~~g~~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~~~~~~ 359 (362)
.|+||+|+|++|.++.+|+|||+|++++|.|+||+|+||+|+++++||.|+|+||+...+|.+++++|.+.
T Consensus 287 ~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~ 357 (443)
T PLN02793 287 EVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVE 357 (443)
T ss_pred cEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999878999888877654
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.4e-71 Score=535.93 Aligned_cols=309 Identities=50% Similarity=0.897 Sum_probs=285.7
Q ss_pred CCCCCCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCC
Q 017991 47 TRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKD 126 (362)
Q Consensus 47 ~~~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~ 126 (362)
....++++++|++|||+|||++|||+|||+||++||++.|+++|+||+|++|+++++.|+|||+++++|+++|+|.++.+
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d 139 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQK 139 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCC
Confidence 33445789999999999999999999999999778888888999999997799999999999999999999999999999
Q ss_pred CCCcCCCCccccEEEeceeeEEEEec--cEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCce
Q 017991 127 PDVWKGLNRRRWLYFNRVNHLTVQGG--GTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMH 204 (362)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~~ni~I~G~--G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~ 204 (362)
+..|+. ...|+.+.+++|++|+|. |+|||+|..||...++.++..++..||+++.|.+|+|++|++++++|+|+|+
T Consensus 140 ~~~y~~--~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~ 217 (431)
T PLN02218 140 RSDYKD--ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQ 217 (431)
T ss_pred hhhccc--cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEE
Confidence 988863 357999999999999996 9999999999986655444456678999999999999999999999999999
Q ss_pred eEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCC
Q 017991 205 IAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (362)
Q Consensus 205 i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 284 (362)
+++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||+++++++||+|+||+|.++||++|||+|++
T Consensus 218 i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~ 297 (431)
T PLN02218 218 ISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDD 297 (431)
T ss_pred EEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999876
Q ss_pred CCcccEEeEEEEcEEEeCCceeEEEEeeCCCCceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceee
Q 017991 285 NSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYA 358 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~~~~~ 358 (362)
...+.|+||+|+|+++.++.+|+|||+|+|++|.|+||+|+||+|+++++||.|+|.||+.. .|..++|+|-+
T Consensus 298 ~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I 370 (431)
T PLN02218 298 NSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQV 370 (431)
T ss_pred CCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEE
Confidence 66789999999999999999999999999999999999999999999999999999999875 48887766544
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=6.2e-68 Score=505.11 Aligned_cols=304 Identities=39% Similarity=0.744 Sum_probs=276.0
Q ss_pred CCCCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCC
Q 017991 49 SKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPD 128 (362)
Q Consensus 49 ~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~ 128 (362)
...++++||++|||++||++|||+|||+||++||++.||++|+||+| +|++++|.|.|||||+++|+++|+++++.+..
T Consensus 22 ~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G-~yl~g~i~l~gpcksnv~l~l~G~l~~~~d~~ 100 (394)
T PLN02155 22 SSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTG-TFLLKVITFGGPCKSKITFQVAGTVVAPEDYR 100 (394)
T ss_pred ccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCC-cEEEEEEEEcccCCCCceEEEeeEEECccccc
Confidence 34557999999999999999999999999976788888899999999 99999999999999999999999999988877
Q ss_pred CcCCCCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEe
Q 017991 129 VWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFT 208 (362)
Q Consensus 129 ~~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~ 208 (362)
.|.. ...|+.+.+.+++.|.| |+|||+|..||..... ......+|+++.|.+|+|++|++++++|+|.|++++.
T Consensus 101 ~~~~--~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~---~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~ 174 (394)
T PLN02155 101 TFGN--SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKS---GQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLN 174 (394)
T ss_pred cccc--cceeEEEECcCCCEEEc-cEEecCceeEEEcccC---CCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEE
Confidence 7743 24699999999999999 9999999999973211 1223457789999999999999999999999999999
Q ss_pred ceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCCCcc
Q 017991 209 NCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSV 288 (362)
Q Consensus 209 ~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~ 288 (362)
.|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||+++++++||+|+||.|.++||++|||+|+....+
T Consensus 175 ~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~ 254 (394)
T PLN02155 175 GCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNED 254 (394)
T ss_pred CeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCC
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999998755578
Q ss_pred cEEeEEEEcEEEeCCceeEEEEeeCC-CCceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeee
Q 017991 289 RIHDIMVYGALISNTQNGVRIKTWQG-GSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYAT 359 (362)
Q Consensus 289 ~v~ni~i~n~~i~~~~~gi~i~~~~g-~~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~~~~~~ 359 (362)
.|+||+++|++|.++.+|+|||+|.+ ++|+|+||+|+||+|+++++||.|+|+|++....|++++++|.+.
T Consensus 255 ~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~ 326 (394)
T PLN02155 255 GVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKIS 326 (394)
T ss_pred cEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEE
Confidence 99999999999999999999999975 679999999999999999999999999998766788777766554
No 4
>PLN03010 polygalacturonase
Probab=100.00 E-value=1.2e-67 Score=503.96 Aligned_cols=293 Identities=40% Similarity=0.758 Sum_probs=274.3
Q ss_pred CCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCC-CcEEEEcCCcEEEeeeeeccCCCC-CCceEEEEeEEECCCCCC
Q 017991 51 SKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPA-RTKIVFSAGYTFLIHPIDISGPCK-SRLTLEISGTIVAPKDPD 128 (362)
Q Consensus 51 ~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~g-g~~v~~P~G~~Y~i~~l~l~~~~~-s~v~l~~~G~i~~~~~~~ 128 (362)
.+.++||++|||++||++|||+|||+||++||...+ +++|+||+|++|++++|.|++||+ ++++|+++|+|+++.++.
T Consensus 43 ~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~ 122 (409)
T PLN03010 43 NGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIV 122 (409)
T ss_pred CCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChh
Confidence 557899999999999999999999999997775432 379999999779999999999886 589999999999999999
Q ss_pred CcCCCCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEe
Q 017991 129 VWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFT 208 (362)
Q Consensus 129 ~~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~ 208 (362)
.|+......|+.|.+++|++|+|.|+|||+|+.||. ++.|.+|+|++|++++++|+|.|++++.
T Consensus 123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~----------------~l~~~~~~nv~v~gitl~nsp~~~i~i~ 186 (409)
T PLN03010 123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE----------------ALHISKCDNLTINGITSIDSPKNHISIK 186 (409)
T ss_pred hccCCCCcceEEEecccccEEeeceEEeCCCccccc----------------eEEEEeecCeEEeeeEEEcCCceEEEEe
Confidence 997655567999999999999999999999999996 5899999999999999999999999999
Q ss_pred ceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCCCcc
Q 017991 209 NCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSV 288 (362)
Q Consensus 209 ~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~ 288 (362)
.|++|+|+|++|.++..++|+||||+.+|++|+|+||+|.++||||++++++.++.|+++.|.++||++|||+|+.....
T Consensus 187 ~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~ 266 (409)
T PLN03010 187 TCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANA 266 (409)
T ss_pred ccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999998866667
Q ss_pred cEEeEEEEcEEEeCCceeEEEEeeCCCCceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeee
Q 017991 289 RIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYAT 359 (362)
Q Consensus 289 ~v~ni~i~n~~i~~~~~gi~i~~~~g~~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~~~~~~ 359 (362)
.|+||+|+|++|.++.+|+|||+|+|++|.|+||+|+||+|+++++||.|+|+|++...+|.+++|+|.+.
T Consensus 267 ~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Is 337 (409)
T PLN03010 267 KVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAIS 337 (409)
T ss_pred eeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEE
Confidence 89999999999999999999999999999999999999999999999999999999888899888988775
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=3.8e-68 Score=510.15 Aligned_cols=298 Identities=42% Similarity=0.791 Sum_probs=272.9
Q ss_pred CCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeccCCCCCC-ceEEEEeEEECCCCCCC
Q 017991 51 SKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSR-LTLEISGTIVAPKDPDV 129 (362)
Q Consensus 51 ~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~-v~l~~~G~i~~~~~~~~ 129 (362)
.+.++||++|||+|||++|||+|||+||++||++.++++|+||+|++|++++|.|+|||++. ++++++|++.++.. ..
T Consensus 20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~-~~ 98 (456)
T PLN03003 20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-GN 98 (456)
T ss_pred eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-cc
Confidence 44689999999999999999999999999889877889999999977999999999999874 88888999998754 45
Q ss_pred cCCCCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEec
Q 017991 130 WKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTN 209 (362)
Q Consensus 130 ~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~ 209 (362)
|.+. ...||.|.++++++|+|.|+|||+|..||... ..||+++.|.+|+|++|++++++|+|.|++++..
T Consensus 99 w~~~-~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~---------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~ 168 (456)
T PLN03003 99 WKGD-KDQWILFTDIEGLVIEGDGEINGQGSSWWEHK---------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISE 168 (456)
T ss_pred ccCC-CcceEEEEcccceEEeccceEeCCchhhhhcc---------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEec
Confidence 7642 45799999999999999999999999999741 4689999999999999999999999999999999
Q ss_pred eeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCCCccc
Q 017991 210 CLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVR 289 (362)
Q Consensus 210 ~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~ 289 (362)
|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||+++++++||+|+||+|.++||++|||+|+....+.
T Consensus 169 c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~ 248 (456)
T PLN03003 169 CNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETAT 248 (456)
T ss_pred cccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcce
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999987665678
Q ss_pred EEeEEEEcEEEeCCceeEEEEeeCCCCceEEeEEEEeEEEecCCccEEEEeeeCCCC--CCCCCCCCceeee
Q 017991 290 IHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSP--VPCANQVCNPYAT 359 (362)
Q Consensus 290 v~ni~i~n~~i~~~~~gi~i~~~~g~~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~--~~c~~~~~~~~~~ 359 (362)
|+||+|+|++|.++.+|+|||+|+|++|.|+||+|+||+|+++++||.|+|+|++.+ ..|..++|+|.+.
T Consensus 249 V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~Is 320 (456)
T PLN03003 249 VENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVS 320 (456)
T ss_pred EEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEE
Confidence 999999999999999999999999999999999999999999999999999998643 2366677777654
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.1e-65 Score=491.80 Aligned_cols=303 Identities=39% Similarity=0.714 Sum_probs=270.7
Q ss_pred CCCCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCC
Q 017991 49 SKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPD 128 (362)
Q Consensus 49 ~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~ 128 (362)
...+.++||++|||+|||++|||+|||+||++||++.|+++|+||+| +|+++++.|+|||++...|.+ +|++++++.
T Consensus 31 ~~~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G-~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~ 107 (404)
T PLN02188 31 GSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPG-TYYIGPVQFHGPCTNVSSLTF--TLKAATDLS 107 (404)
T ss_pred cCCceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCC-eEEEEeEEeCCCcCcceeEEE--EEEcCCCHH
Confidence 34557999999999999999999999999987788888899999999 999999999999976555555 899999998
Q ss_pred CcCCCCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEe
Q 017991 129 VWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFT 208 (362)
Q Consensus 129 ~~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~ 208 (362)
.|.. ...|+.+..++|++|+|.|+|||+|+.||..... .....+..||++|.|.+|+|++|++++++|+|+|++++.
T Consensus 108 ~y~~--~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~-~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~ 184 (404)
T PLN02188 108 RYGS--GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKC-PIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALV 184 (404)
T ss_pred HCCC--ccceEEEeceeeEEEEeeEEEeCCCccccccccc-ccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEE
Confidence 8864 3468888889999999999999999999973211 111234679999999999999999999999999999999
Q ss_pred ceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCCCcc
Q 017991 209 NCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSV 288 (362)
Q Consensus 209 ~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~ 288 (362)
.|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+|+.|.++||++|||+|++++.+
T Consensus 185 ~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~ 264 (404)
T PLN02188 185 ECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEG 264 (404)
T ss_pred ccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCC
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999888888
Q ss_pred cEEeEEEEcEEEeCCceeEEEEeeCC--CCceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCC-CCceee
Q 017991 289 RIHDIMVYGALISNTQNGVRIKTWQG--GSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQ-VCNPYA 358 (362)
Q Consensus 289 ~v~ni~i~n~~i~~~~~gi~i~~~~g--~~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~-~~~~~~ 358 (362)
.|+||+|+|++|.++.+|+|||+|.+ ++|.|+||+|+||+|+++++||.|+|+|++... |..+ ++.|.+
T Consensus 265 ~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~-~~~~~~s~v~I 336 (404)
T PLN02188 265 DVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYS-CESKYPSGVTL 336 (404)
T ss_pred cEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCC-CCcCCCCCcEE
Confidence 99999999999999999999999976 358999999999999999999999999998653 6543 454543
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=4.4e-51 Score=385.47 Aligned_cols=270 Identities=39% Similarity=0.660 Sum_probs=233.3
Q ss_pred CCCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeEEEEeccEEecCCCee
Q 017991 83 SFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEW 162 (362)
Q Consensus 83 ~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~ 162 (362)
++.++++|+||+| +|+++++.|++++.+++.++++|++.++.....+. . ..||.+.+++|++|+|.|+|||+|..|
T Consensus 2 ~~~~~~~v~vP~g-~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~--~-~~~i~~~~~~ni~i~G~G~IDG~G~~w 77 (326)
T PF00295_consen 2 SSIGGGTVVVPAG-TYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGP--N-SALIYAENAENITITGKGTIDGNGQAW 77 (326)
T ss_dssp SEEEEESEEESTS-TEEEEETSEETECETTCEEEEESEEEEG-EESTSE----SEEEEEESEEEEECTTSSEEE--GGGT
T ss_pred cCCcCCEEEECCC-CeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCC--c-cEEEEEEceEEEEecCCceEcCchhhh
Confidence 4455689999999 99999999976556899999999998875443333 2 688999999999999999999999999
Q ss_pred eecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEE
Q 017991 163 WSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEV 242 (362)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I 242 (362)
|....... .....||+++.|..|+|++|++++++|+|.|++++..|++|+|++++|.++...+|+|||++.+|+||+|
T Consensus 78 ~~~~~~~~--~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I 155 (326)
T PF00295_consen 78 WDGSGDAN--NNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTI 155 (326)
T ss_dssp CSSCTTHC--CSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEE
T ss_pred hccccccc--cccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEE
Confidence 98543211 3446899999999999999999999999999999999999999999999988789999999999999999
Q ss_pred EeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCCCceEEeE
Q 017991 243 KNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNI 322 (362)
Q Consensus 243 ~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~g~i~ni 322 (362)
+||+|+++||||+++++..||+|+||+|.++||++|||++.......|+||+|+|++|.++.+|++||++++++|.|+||
T Consensus 156 ~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI 235 (326)
T PF00295_consen 156 ENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNI 235 (326)
T ss_dssp ESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEE
T ss_pred EEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEEece
Confidence 99999999999999998889999999999999999999876444457999999999999999999999999999999999
Q ss_pred EEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeee
Q 017991 323 QFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYAT 359 (362)
Q Consensus 323 ~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~~~~~~ 359 (362)
+|+||+|+++++||.|++.|++ ..+|..+++.+.+.
T Consensus 236 ~f~ni~~~~v~~pi~i~~~y~~-~~~~~~~~~~~~i~ 271 (326)
T PF00295_consen 236 TFENITMENVKYPIFIDQDYRD-GGPCGKPPSGVSIS 271 (326)
T ss_dssp EEEEEEEEEESEEEEEEEEECT-TEESSCSSSSSEEE
T ss_pred EEEEEEecCCceEEEEEecccc-ccccCcccCCceEE
Confidence 9999999999999999999998 45788776666553
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-43 Score=345.04 Aligned_cols=280 Identities=31% Similarity=0.503 Sum_probs=237.2
Q ss_pred CCCCCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEE-e-EEECCC
Q 017991 48 RSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEIS-G-TIVAPK 125 (362)
Q Consensus 48 ~~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~-G-~i~~~~ 125 (362)
.......++|.+|||++||.+|+++|||+||+ +|++.+|++|+||+| +|+.++|+| ||+++|+++ | +|..+.
T Consensus 76 ~~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~-~ca~a~Gg~V~lPaG-tylsg~l~L----KS~~~L~l~egatl~~~~ 149 (542)
T COG5434 76 TAATDTAFSVSDDGAVGDGATDNTAAIQAAID-ACASAGGGTVLLPAG-TYLSGPLFL----KSNVTLHLAEGATLLASS 149 (542)
T ss_pred cccccceeeeccccccccCCccCHHHHHHHHH-hhhhhcCceEEECCc-eeEeeeEEE----ecccEEEecCCceeeCCC
Confidence 34566789999999999999999999999999 566677899999999 999999999 999999995 6 999999
Q ss_pred CCCCcCC--------CC--------cc-------------ccEEEeceeeEE-EEeccEEecCC---Ce-eeecccccCC
Q 017991 126 DPDVWKG--------LN--------RR-------------RWLYFNRVNHLT-VQGGGTINGMG---QE-WWSRSCKINT 171 (362)
Q Consensus 126 ~~~~~~~--------~~--------~~-------------~~i~~~~~~ni~-I~G~G~idG~G---~~-~~~~~~~~~~ 171 (362)
++.+|.. .. .. ..+.....+|.. |.|.++++|++ .. ||....-. .
T Consensus 150 ~p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~-~ 228 (542)
T COG5434 150 NPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAV-E 228 (542)
T ss_pred ChhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccch-h
Confidence 9888872 00 01 112222234444 88888998864 22 67543300 0
Q ss_pred CCCCC--CCCeEEEEEeecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEec
Q 017991 172 TNPCR--HAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT 249 (362)
Q Consensus 172 ~~~~~--~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~ 249 (362)
..... .||..+.+..|+||++++++|.+++.|.+++..|+|++++|++|.+.... |+|||++.+|+|++|++|+|.+
T Consensus 229 ~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdt 307 (542)
T COG5434 229 TRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDT 307 (542)
T ss_pred hcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEec
Confidence 11111 58999999999999999999999999999999999999999999998755 9999999999999999999999
Q ss_pred CCccEEEcCC-----------ceeEEEEeeEEcCCce-eEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCCCc
Q 017991 250 GDDCISIVGN-----------SSLIRIRNFACGPGHG-ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSG 317 (362)
Q Consensus 250 gdD~i~i~s~-----------~~ni~i~n~~~~~~~g-i~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~g 317 (362)
+||||+++++ ++||+|+||++..+|| +.+|+ ++.+.++||++|||.|.++.+|+|||+..+++|
T Consensus 308 gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gs----e~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG 383 (542)
T COG5434 308 GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGS----EMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGG 383 (542)
T ss_pred CCceEEeecccCCcccccccccccEEEecceecccccceEeee----ecCCceeEEEEEeeeeccCcceeeeeeecccce
Confidence 9999999985 6899999999999997 89999 688899999999999999999999999999999
Q ss_pred eEEeEEEEeEEEecCCccEEEE
Q 017991 318 SATNIQFLDVLMKNVSNPIIID 339 (362)
Q Consensus 318 ~i~ni~~~ni~~~~~~~~i~i~ 339 (362)
.++||+|++++|.++..+..+.
T Consensus 384 ~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 384 GVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eEEEEEEecccccCcccceeee
Confidence 9999999999999997555544
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.95 E-value=5.6e-26 Score=214.90 Aligned_cols=250 Identities=14% Similarity=0.183 Sum_probs=188.8
Q ss_pred CCCCCCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEE-eEEECCC
Q 017991 47 TRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEIS-GTIVAPK 125 (362)
Q Consensus 47 ~~~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~-G~i~~~~ 125 (362)
++..+.+.+++.+|||++||++|+|+|||+||++| +++ +++|.+|+| +|+.+++.| +++++|.++ |....
T Consensus 30 ~p~~p~r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a~g-G~tV~Lp~G-~Y~~G~L~L----~spltL~G~~gAt~~-- 100 (455)
T TIGR03808 30 APLTSTLGRDATQYGVRPNSPDDQTRALQRAIDEA-ARA-QTPLALPPG-VYRTGPLRL----PSGAQLIGVRGATRL-- 100 (455)
T ss_pred cCCCCccCCCHHHcCcCCCCcchHHHHHHHHHHHh-hcC-CCEEEECCC-ceecccEEE----CCCcEEEecCCcEEE--
Confidence 33455566999999999999999999999999964 433 578999999 999999999 899999987 33210
Q ss_pred CCCCcCCCCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCcee
Q 017991 126 DPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHI 205 (362)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i 205 (362)
.+.+ ...++...+.++++|+|. +|++.|..|. .++.+|.+..|++++|++++|.++..|+|
T Consensus 101 ---vIdG--~~~lIiai~A~nVTIsGL-tIdGsG~dl~-------------~rdAgI~v~~a~~v~Iedn~L~gsg~FGI 161 (455)
T TIGR03808 101 ---VFTG--GPSLLSSEGADGIGLSGL-TLDGGGIPLP-------------QRRGLIHCQGGRDVRITDCEITGSGGNGI 161 (455)
T ss_pred ---EEcC--CceEEEEecCCCeEEEee-EEEeCCCccc-------------CCCCEEEEccCCceEEEeeEEEcCCcceE
Confidence 0111 135566778899999996 9999996442 46678999999999999999999999999
Q ss_pred EEecee----------------------eEEEEeEEEECCCC--------------------------------CCCCCe
Q 017991 206 AFTNCL----------------------RVVISNLEVIAPAE--------------------------------SPNTDG 231 (362)
Q Consensus 206 ~~~~~~----------------------nv~i~n~~I~~~~~--------------------------------~~~~DG 231 (362)
.+..|+ ++.|++.+|....+ ....+|
T Consensus 162 ~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNG 241 (455)
T TIGR03808 162 WLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNA 241 (455)
T ss_pred EEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCcccc
Confidence 999999 77777777775443 345778
Q ss_pred eeecCccCEEEEeeEEecCC-ccEEEcCCceeEEEEeeEEcCCceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEE
Q 017991 232 IHISASRGVEVKNSIVGTGD-DCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIK 310 (362)
Q Consensus 232 I~~~~s~nv~I~n~~i~~gd-D~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~ 310 (362)
|+++.+.+++|++++|+..+ |+|.+.+ ++|+.|++++|..-.=..+.++- ..+.-.++||++.+...|+.+-
T Consensus 242 I~~~~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhymf------s~~g~~i~~N~~~g~~~G~av~ 314 (455)
T TIGR03808 242 INAFRAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSEF------AFEGAVIANNTVDGAAVGVSVC 314 (455)
T ss_pred EEEEccCCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEEE------eCCCcEEeccEEecCcceEEEE
Confidence 88888888888888888888 8888887 67888888888743212333321 1122477888888888888887
Q ss_pred eeCCC--CceEEeEEEEeEEEec
Q 017991 311 TWQGG--SGSATNIQFLDVLMKN 331 (362)
Q Consensus 311 ~~~g~--~g~i~ni~~~ni~~~~ 331 (362)
....+ -..+++=.++|++-+.
T Consensus 315 nf~~ggr~~~~~gn~irn~~~~~ 337 (455)
T TIGR03808 315 NFNEGGRLAVVQGNIIRNLIPKR 337 (455)
T ss_pred eecCCceEEEEecceeeccccCC
Confidence 65432 2466777777776654
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.88 E-value=1.4e-21 Score=175.16 Aligned_cols=208 Identities=30% Similarity=0.419 Sum_probs=117.0
Q ss_pred eEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEee-eeeccCCCCCCceEEEEe---E-EECCCCCC
Q 017991 54 VIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIH-PIDISGPCKSRLTLEISG---T-IVAPKDPD 128 (362)
Q Consensus 54 ~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~-~l~l~~~~~s~v~l~~~G---~-i~~~~~~~ 128 (362)
+++|++|||+|||++|||+|||+||++ +++.++++|+||+| +|++. ++.+ +++++|.++| + +.......
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~-~~~~~g~~v~~P~G-~Y~i~~~l~~----~s~v~l~G~g~~~~~~~~~~~~~ 74 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDA-AAAAGGGVVYFPPG-TYRISGTLII----PSNVTLRGAGGNSTILFLSGSGD 74 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHH-HCSTTSEEEEE-SE-EEEESS-EEE-----TTEEEEESSTTTEEEEECTTTS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhh-cccCCCeEEEEcCc-EEEEeCCeEc----CCCeEEEccCCCeeEEEecCccc
Confidence 489999999999999999999999964 44456899999999 99995 5999 8999999985 2 33222111
Q ss_pred CcCCCCccccEEEe--------ceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeC
Q 017991 129 VWKGLNRRRWLYFN--------RVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNS 200 (362)
Q Consensus 129 ~~~~~~~~~~i~~~--------~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~ 200 (362)
.+.. ......+. .++|++|.| .+...- .....+.+..+++++|+++++.+.
T Consensus 75 ~~~~--~~~~~~~~~~~~~~~~~i~nl~i~~------~~~~~~-------------~~~~~i~~~~~~~~~i~nv~~~~~ 133 (225)
T PF12708_consen 75 SFSV--VPGIGVFDSGNSNIGIQIRNLTIDG------NGIDPN-------------NNNNGIRFNSSQNVSISNVRIENS 133 (225)
T ss_dssp TSCC--EEEEEECCSCSCCEEEEEEEEEEEE------TCGCE--------------SCEEEEEETTEEEEEEEEEEEES-
T ss_pred cccc--ccceeeeecCCCCceEEEEeeEEEc------ccccCC-------------CCceEEEEEeCCeEEEEeEEEEcc
Confidence 1110 00011111 134444444 332110 112457777788888888888877
Q ss_pred CCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecC-ccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC--CceeE
Q 017991 201 QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISA-SRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP--GHGIS 277 (362)
Q Consensus 201 ~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~-s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~--~~gi~ 277 (362)
...++.+..+....+.+..... ++.+.. +.++.+.++.+..+++++ ..+.++++++||.+.. ..|+.
T Consensus 134 ~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~i~n~~~~~~~~~gi~ 203 (225)
T PF12708_consen 134 GGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGI--ILGNNNITISNNTFEGNCGNGIN 203 (225)
T ss_dssp SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSE--ECEEEEEEEECEEEESSSSESEE
T ss_pred CccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCcee--EeecceEEEEeEEECCccceeEE
Confidence 6666666654444443322221 233332 345566667666666663 2223566666666654 23555
Q ss_pred EeecCCCCCcccEEeEEEEcEEEeCCceeE
Q 017991 278 IGSLGKSNSSVRIHDIMVYGALISNTQNGV 307 (362)
Q Consensus 278 igs~g~~~~~~~v~ni~i~n~~i~~~~~gi 307 (362)
+... .+++++|++|.++..||
T Consensus 204 i~~~---------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 204 IEGG---------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEEC---------SEEEEEEEEEESSSEEE
T ss_pred EECC---------eEEEEEeEEEECCccCc
Confidence 5441 12666666666666554
No 11
>PLN02793 Probable polygalacturonase
Probab=99.85 E-value=8.2e-19 Score=170.65 Aligned_cols=216 Identities=21% Similarity=0.320 Sum_probs=167.9
Q ss_pred CCCceEEEEeEEECCCCCCCcCC------C----CccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCC
Q 017991 110 KSRLTLEISGTIVAPKDPDVWKG------L----NRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAP 179 (362)
Q Consensus 110 ~s~v~l~~~G~i~~~~~~~~~~~------~----~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~ 179 (362)
.++++|.+.|+|.+.- ...|.. . ..+.++.|.+++|++|+|....+.. .|.
T Consensus 142 ~~ni~ItG~G~IDG~G-~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---~~~--------------- 202 (443)
T PLN02793 142 VNHLTVEGGGTVNGMG-HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---QMH--------------- 202 (443)
T ss_pred CceEEEEeceEEECCC-cccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---CeE---------------
Confidence 5688888889988643 223321 0 1245789999999999994444332 343
Q ss_pred eEEEEEeecceEEEceEEeeC----CCceeEEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccE
Q 017991 180 TAITFHKCKNLKVQNLRVVNS----QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCI 254 (362)
Q Consensus 180 ~~i~~~~~~nv~I~~v~i~n~----~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i 254 (362)
+.+..|+||+|++++|.++ ...+|++..|+||+|+|+.|.+ .+|+|.+. +|+||+|+||.+..|+ +|
T Consensus 203 --i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~Gh-Gi 274 (443)
T PLN02793 203 --IAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPGH-GI 274 (443)
T ss_pred --EEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCCc-cE
Confidence 8899999999999999974 3457999999999999999998 78999996 6899999999998775 69
Q ss_pred EEcC--------CceeEEEEeeEEcCC-ceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCC----------
Q 017991 255 SIVG--------NSSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGG---------- 315 (362)
Q Consensus 255 ~i~s--------~~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~---------- 315 (362)
++++ +.+||+|+||++.++ .|+.|.+.- ...+.++||+|+|++|.+..++|.|......
T Consensus 275 sIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~--g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts 352 (443)
T PLN02793 275 SIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQ--GGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTS 352 (443)
T ss_pred EEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeC--CCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCC
Confidence 9987 268999999999876 699999852 1346899999999999999999999875421
Q ss_pred CceEEeEEEEeEEEecC-CccEEEEeeeCCCCCCCCC-CCCcee
Q 017991 316 SGSATNIQFLDVLMKNV-SNPIIIDQYYCDSPVPCAN-QVCNPY 357 (362)
Q Consensus 316 ~g~i~ni~~~ni~~~~~-~~~i~i~~~y~~~~~~c~~-~~~~~~ 357 (362)
...|+||+|+||+.+.. +.++.+. |....||++ .-++|-
T Consensus 353 ~v~I~nI~~~nI~Gt~~~~~ai~l~---cs~~~pc~ni~l~nI~ 393 (443)
T PLN02793 353 AVKVENISFVHIKGTSATEEAIKFA---CSDSSPCEGLYLEDVQ 393 (443)
T ss_pred CeEEEeEEEEEEEEEEcccccEEEE---eCCCCCEeeEEEEeeE
Confidence 13699999999998875 3467666 666668877 344433
No 12
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.84 E-value=1.3e-18 Score=168.15 Aligned_cols=222 Identities=19% Similarity=0.291 Sum_probs=170.9
Q ss_pred eeccCCCCCCceEEEEeEEECCCCCCCcCCC-CccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeE
Q 017991 103 IDISGPCKSRLTLEISGTIVAPKDPDVWKGL-NRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTA 181 (362)
Q Consensus 103 l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~-~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~ 181 (362)
|.+.+ .++++|.+.|+|.+.- ...|... ....++.|.+++|+.|+| |.-.....|.
T Consensus 107 I~f~~--~~~i~I~G~GtIDGqG-~~wW~~~~~rP~~l~f~~~~nv~I~g---itl~NSp~w~----------------- 163 (456)
T PLN03003 107 ILFTD--IEGLVIEGDGEINGQG-SSWWEHKGSRPTALKFRSCNNLRLSG---LTHLDSPMAH----------------- 163 (456)
T ss_pred EEEEc--ccceEEeccceEeCCc-hhhhhcccCCceEEEEEecCCcEEeC---eEEecCCcEE-----------------
Confidence 44444 5788898889888643 2345432 234578999999999999 3333333453
Q ss_pred EEEEeecceEEEceEEeeCC----CceeEEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEE
Q 017991 182 ITFHKCKNLKVQNLRVVNSQ----QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISI 256 (362)
Q Consensus 182 i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i 256 (362)
+++..|+|++|++++|.++. ..+|++..|+||+|+|+.|.+ .+|+|.+. +|+||+|+||++..+ .+|+|
T Consensus 164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIaiksgs~NI~I~n~~c~~G-HGISI 237 (456)
T PLN03003 164 IHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAINSGTSNIHISGIDCGPG-HGISI 237 (456)
T ss_pred EEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEeCCCCccEEEEeeEEECC-CCeEE
Confidence 89999999999999999742 457999999999999999998 78999997 478999999999876 57999
Q ss_pred cCC--------ceeEEEEeeEEcCC-ceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCC------------
Q 017991 257 VGN--------SSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGG------------ 315 (362)
Q Consensus 257 ~s~--------~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~------------ 315 (362)
++- .+||+|+||++.++ +|+.|.+..+ ..+.++||+|+|++|.+..++|.|......
T Consensus 238 GSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G--g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s 315 (456)
T PLN03003 238 GSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG--GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSS 315 (456)
T ss_pred eeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC--CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCC
Confidence 872 69999999999876 6999998532 246899999999999999999988755421
Q ss_pred CceEEeEEEEeEEEecC-CccEEEEeeeCCCCCCCCC-CCCceee
Q 017991 316 SGSATNIQFLDVLMKNV-SNPIIIDQYYCDSPVPCAN-QVCNPYA 358 (362)
Q Consensus 316 ~g~i~ni~~~ni~~~~~-~~~i~i~~~y~~~~~~c~~-~~~~~~~ 358 (362)
...|+||+|+||+-+.. +.++.+. |....||++ ..++|.+
T Consensus 316 ~v~IsnI~f~NI~GTs~~~~ai~l~---Cs~~~PC~nI~l~ni~l 357 (456)
T PLN03003 316 AVEVSKVVFSNFIGTSKSEYGVDFR---CSERVPCTEIFLRDMKI 357 (456)
T ss_pred CcEEEeEEEEeEEEEeCccceEEEE---eCCCCCeeeEEEEEEEE
Confidence 13799999999997654 4577665 777778877 3444443
No 13
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.83 E-value=2.7e-18 Score=165.19 Aligned_cols=219 Identities=19% Similarity=0.292 Sum_probs=168.3
Q ss_pred CCCceEEEEeEEECCCCCCCcCC---------CCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCe
Q 017991 110 KSRLTLEISGTIVAPKDPDVWKG---------LNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPT 180 (362)
Q Consensus 110 ~s~v~l~~~G~i~~~~~~~~~~~---------~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~ 180 (362)
..+++|.+.|+|.+.-. ..|.. ...+.++.|.+++|+.|+| |.-.....|.
T Consensus 121 ~~ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~g---itl~nSp~w~---------------- 180 (404)
T PLN02188 121 VNGLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRG---ITSVNSKFFH---------------- 180 (404)
T ss_pred eeeEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeC---eEEEcCCCeE----------------
Confidence 36788888899987543 23421 1123578999999999999 4333344454
Q ss_pred EEEEEeecceEEEceEEeeC----CCceeEEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEE
Q 017991 181 AITFHKCKNLKVQNLRVVNS----QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCIS 255 (362)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~n~----~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~ 255 (362)
+++..|+||+|++++|.++ ...+|++..|++|+|+|++|.+ .+|+|.+. +++||+|+|+.+..+ .+++
T Consensus 181 -i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~g-hGis 253 (404)
T PLN02188 181 -IALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPG-HGIS 253 (404)
T ss_pred -EEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCC-CcEE
Confidence 8999999999999999874 2457999999999999999998 78999996 577999999999766 5799
Q ss_pred EcC--------CceeEEEEeeEEcCC-ceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCC----------CC
Q 017991 256 IVG--------NSSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQG----------GS 316 (362)
Q Consensus 256 i~s--------~~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g----------~~ 316 (362)
+++ +.+||+|+||++.++ +|+.|.+.-.....+.++||+|+|++|.+...+|.|..... ..
T Consensus 254 iGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~ 333 (404)
T PLN02188 254 VGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSG 333 (404)
T ss_pred eCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCC
Confidence 977 269999999999876 69999885322234689999999999999999999875321 12
Q ss_pred ceEEeEEEEeEEEecC-CccEEEEeeeCCCCCCCCC-CCCceee
Q 017991 317 GSATNIQFLDVLMKNV-SNPIIIDQYYCDSPVPCAN-QVCNPYA 358 (362)
Q Consensus 317 g~i~ni~~~ni~~~~~-~~~i~i~~~y~~~~~~c~~-~~~~~~~ 358 (362)
..|+||+|+||+.+.. +.++.+. |....||++ .-++|-+
T Consensus 334 v~I~nIt~~nI~gt~~~~~a~~l~---cs~~~pc~ni~~~nV~i 374 (404)
T PLN02188 334 VTLSDIYFKNIRGTSSSQVAVLLK---CSRGVPCQGVYLQDVHL 374 (404)
T ss_pred cEEEeEEEEEEEEEecCceEEEEE---ECCCCCEeeEEEEeeEE
Confidence 5799999999999876 3366555 666678877 3444433
No 14
>PLN02218 polygalacturonase ADPG
Probab=99.82 E-value=2.8e-18 Score=166.19 Aligned_cols=210 Identities=20% Similarity=0.293 Sum_probs=163.5
Q ss_pred CCCceEEEE--eEEECCCCCCCcCCC----------CccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCC
Q 017991 110 KSRLTLEIS--GTIVAPKDPDVWKGL----------NRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRH 177 (362)
Q Consensus 110 ~s~v~l~~~--G~i~~~~~~~~~~~~----------~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~ 177 (362)
..+++|.+. |+|.+.- ...|... ..+.++.|.+++|++|+| |.-.....|.
T Consensus 155 ~~ni~I~G~~~GtIDG~G-~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~g---itl~nSp~w~------------- 217 (431)
T PLN02218 155 VNNLSVDGGSTGVVDGNG-ETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKN---LRVRNAQQIQ------------- 217 (431)
T ss_pred CcEEEEECCCCcEEeCCc-hhhhhcccccCCcCccCcCCEEEEEEccccEEEeC---eEEEcCCCEE-------------
Confidence 567777775 7777543 2234321 123468899999999999 3333333454
Q ss_pred CCeEEEEEeecceEEEceEEeeC----CCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecC-ccCEEEEeeEEecCCc
Q 017991 178 APTAITFHKCKNLKVQNLRVVNS----QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISA-SRGVEVKNSIVGTGDD 252 (362)
Q Consensus 178 ~~~~i~~~~~~nv~I~~v~i~n~----~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~-s~nv~I~n~~i~~gdD 252 (362)
+++..|+||+|++++|.++ ...+|++..|+||+|+|++|.+ .+|.|.+.+ |+||+|+||++..| .
T Consensus 218 ----i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDDcIaIksgs~nI~I~n~~c~~G-H 287 (431)
T PLN02218 218 ----ISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDDCISIESGSQNVQINDITCGPG-H 287 (431)
T ss_pred ----EEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CCceEEecCCCceEEEEeEEEECC-C
Confidence 8999999999999999873 3457999999999999999998 789999974 78999999999866 4
Q ss_pred cEEEcCC--------ceeEEEEeeEEcCC-ceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCC---------
Q 017991 253 CISIVGN--------SSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQG--------- 314 (362)
Q Consensus 253 ~i~i~s~--------~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g--------- 314 (362)
+++++|. .+||+|+||++.++ .|+.|.+.- ...+.++||+|+|++|.+..++|.|.....
T Consensus 288 GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~--Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~ 365 (431)
T PLN02218 288 GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ--GGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQ 365 (431)
T ss_pred CEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecC--CCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCC
Confidence 7999872 57999999999875 699999852 235699999999999999999999886532
Q ss_pred CCceEEeEEEEeEEEecCC-ccEEEEeeeCCCCCCCCC
Q 017991 315 GSGSATNIQFLDVLMKNVS-NPIIIDQYYCDSPVPCAN 351 (362)
Q Consensus 315 ~~g~i~ni~~~ni~~~~~~-~~i~i~~~y~~~~~~c~~ 351 (362)
....|+||+|+||+.+... .++.+. |....||++
T Consensus 366 s~v~I~nI~~~NI~gtsa~~~ai~l~---cs~~~pc~n 400 (431)
T PLN02218 366 SAVQVKNVVYRNISGTSASDVAITFN---CSKNYPCQG 400 (431)
T ss_pred CCeEEEEEEEEeEEEEecCCcEEEEE---ECCCCCEee
Confidence 1246999999999998763 466666 677778987
No 15
>PLN02155 polygalacturonase
Probab=99.81 E-value=1.4e-17 Score=159.59 Aligned_cols=221 Identities=17% Similarity=0.279 Sum_probs=166.6
Q ss_pred eeccCCCCCCceEEEEeEEECCCCCCCcCC----C---CccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCC
Q 017991 103 IDISGPCKSRLTLEISGTIVAPKDPDVWKG----L---NRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPC 175 (362)
Q Consensus 103 l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~----~---~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~ 175 (362)
+.+.+ .+++.|.+ |+|...-. ..|.. . ....++.+.+++|+.|+| |.-..+..|
T Consensus 109 i~~~~--~~~i~i~G-G~iDGqG~-~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~g---itl~nSp~w------------ 169 (394)
T PLN02155 109 ILFNK--VNRFSLVG-GTFDARAN-GFWSCRKSGQNCPPGVRSISFNSAKDVIISG---VKSMNSQVS------------ 169 (394)
T ss_pred EEEEC--cCCCEEEc-cEEecCce-eEEEcccCCCCCCCcccceeEEEeeeEEEEC---eEEEcCCCe------------
Confidence 34444 56788887 88765431 22321 1 112468999999999999 333333344
Q ss_pred CCCCeEEEEEeecceEEEceEEeeCC----CceeEEeceeeEEEEeEEEECCCCCCCCCeeeecC-ccCEEEEeeEEecC
Q 017991 176 RHAPTAITFHKCKNLKVQNLRVVNSQ----QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISA-SRGVEVKNSIVGTG 250 (362)
Q Consensus 176 ~~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~-s~nv~I~n~~i~~g 250 (362)
.+++..|+||+|++++|.++. ..+|++..|+||+|+|+.|.+ .+|+|.+.+ |+||+|+||.+..|
T Consensus 170 -----~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~G 239 (394)
T PLN02155 170 -----HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPG 239 (394)
T ss_pred -----EEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECC
Confidence 389999999999999999843 357999999999999999998 789999975 78999999999876
Q ss_pred CccEEEcCC--------ceeEEEEeeEEcCC-ceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCC------
Q 017991 251 DDCISIVGN--------SSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGG------ 315 (362)
Q Consensus 251 dD~i~i~s~--------~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~------ 315 (362)
.+++|++. .+||+|+||++.++ +|+.|.+..+ ...+.++||+|+|++|.+..++|.|......
T Consensus 240 -hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~ 317 (394)
T PLN02155 240 -HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCP 317 (394)
T ss_pred -ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCc
Confidence 47999882 49999999999875 6999988421 2357899999999999999999999754311
Q ss_pred ----CceEEeEEEEeEEEecC-CccEEEEeeeCCCCCCCCC-CCCcee
Q 017991 316 ----SGSATNIQFLDVLMKNV-SNPIIIDQYYCDSPVPCAN-QVCNPY 357 (362)
Q Consensus 316 ----~g~i~ni~~~ni~~~~~-~~~i~i~~~y~~~~~~c~~-~~~~~~ 357 (362)
...|+||+|+|++.+.. +.++.+. |....||++ ..++|-
T Consensus 318 ~~~s~v~i~~It~~ni~gt~~~~~a~~l~---c~~~~pc~~I~l~nv~ 362 (394)
T PLN02155 318 NEYSGVKISQVTYKNIQGTSATQEAMKLV---CSKSSPCTGITLQDIK 362 (394)
T ss_pred CCCCCeEEEEEEEEeeEEEecCCceEEEE---eCCCCCEEEEEEEeeE
Confidence 13799999999999887 3466665 666677876 344443
No 16
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.81 E-value=2.8e-18 Score=162.21 Aligned_cols=194 Identities=23% Similarity=0.334 Sum_probs=153.1
Q ss_pred ccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCC----CceeEEece
Q 017991 135 RRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQ----QMHIAFTNC 210 (362)
Q Consensus 135 ~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~----~~~i~~~~~ 210 (362)
.+.++.+.+++|++|+|.-.. ....|. +.+..|+|++|++++|.++. ..+|++..|
T Consensus 91 rp~~i~~~~~~~~~i~~i~~~---nsp~w~-----------------~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s 150 (326)
T PF00295_consen 91 RPRLIRFNNCKNVTIEGITIR---NSPFWH-----------------IHINDCDNVTISNITINNPANSPNTDGIDIDSS 150 (326)
T ss_dssp SSESEEEEEEEEEEEESEEEE---S-SSES-----------------EEEESEEEEEEESEEEEEGGGCTS--SEEEESE
T ss_pred ccceeeeeeecceEEEeeEec---CCCeeE-----------------EEEEccCCeEEcceEEEecCCCCCcceEEEEee
Confidence 346799999999999993333 333353 88999999999999999864 348999999
Q ss_pred eeEEEEeEEEECCCCCCCCCeeeecCcc-CEEEEeeEEecCCccEEEcC---C-----ceeEEEEeeEEcCC-ceeEEee
Q 017991 211 LRVVISNLEVIAPAESPNTDGIHISASR-GVEVKNSIVGTGDDCISIVG---N-----SSLIRIRNFACGPG-HGISIGS 280 (362)
Q Consensus 211 ~nv~i~n~~I~~~~~~~~~DGI~~~~s~-nv~I~n~~i~~gdD~i~i~s---~-----~~ni~i~n~~~~~~-~gi~igs 280 (362)
+||+|+||.|.+ ..|+|.+.+.+ ||+|+||++..+ .++++++ + .+||+|+||++.++ +|+.|.+
T Consensus 151 ~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~g-hGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt 224 (326)
T PF00295_consen 151 KNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGG-HGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKT 224 (326)
T ss_dssp EEEEEESEEEES-----SSESEEESSEECEEEEESEEEESS-SEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEE
T ss_pred eEEEEEEeeccc-----ccCcccccccccceEEEeEEEecc-ccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEE
Confidence 999999999998 78999998765 999999999865 4588875 2 48999999999876 6899988
Q ss_pred cCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCC---------CCceEEeEEEEeEEEecCC-ccEEEEeeeCCCCCCCC
Q 017991 281 LGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQG---------GSGSATNIQFLDVLMKNVS-NPIIIDQYYCDSPVPCA 350 (362)
Q Consensus 281 ~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g---------~~g~i~ni~~~ni~~~~~~-~~i~i~~~y~~~~~~c~ 350 (362)
.- ...+.++||+|+|++|.+..++|.|..... ....|+||+|+||+..... .++.+. |....||+
T Consensus 225 ~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~---~~~~~~~~ 299 (326)
T PF00295_consen 225 WP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISID---CSPGSPCS 299 (326)
T ss_dssp ET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE----BTTSSEE
T ss_pred ec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEE---ECCcCcEE
Confidence 42 246799999999999999999998876421 1258999999999999886 577766 66666787
Q ss_pred C-CCCceeee
Q 017991 351 N-QVCNPYAT 359 (362)
Q Consensus 351 ~-~~~~~~~~ 359 (362)
+ .-.+|.++
T Consensus 300 ni~f~nv~i~ 309 (326)
T PF00295_consen 300 NITFENVNIT 309 (326)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEeEEEE
Confidence 6 34454443
No 17
>PLN03010 polygalacturonase
Probab=99.80 E-value=3.4e-17 Score=157.33 Aligned_cols=204 Identities=18% Similarity=0.290 Sum_probs=161.6
Q ss_pred CCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecc
Q 017991 110 KSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKN 189 (362)
Q Consensus 110 ~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n 189 (362)
.++++|.+.|+|...- ...| .++.+.+++|+.|+|.-..+ ...|. +++.+|+|
T Consensus 138 v~nv~I~G~G~IDG~G-~~ww------~~l~~~~~~nv~v~gitl~n---sp~~~-----------------i~i~~~~n 190 (409)
T PLN03010 138 VSGLMIDGSGTIDGRG-SSFW------EALHISKCDNLTINGITSID---SPKNH-----------------ISIKTCNY 190 (409)
T ss_pred ccccEEeeceEEeCCC-cccc------ceEEEEeecCeEEeeeEEEc---CCceE-----------------EEEecccc
Confidence 6789999999987643 1223 25889999999999943333 33343 88999999
Q ss_pred eEEEceEEeeCC----CceeEEeceeeEEEEeEEEECCCCCCCCCeeeecC-ccCEEEEeeEEecCCccEEEcCC-----
Q 017991 190 LKVQNLRVVNSQ----QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISA-SRGVEVKNSIVGTGDDCISIVGN----- 259 (362)
Q Consensus 190 v~I~~v~i~n~~----~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~-s~nv~I~n~~i~~gdD~i~i~s~----- 259 (362)
++|++++|.++. ..+|++..|++|+|+|+.|.+ .+|+|.+.+ +.++.|+++....+ .+++|++-
T Consensus 191 v~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~-----gDDcIaiksgs~ni~I~~~~C~~g-HGisIGS~g~~~~ 264 (409)
T PLN03010 191 VAISKINILAPETSPNTDGIDISYSTNINIFDSTIQT-----GDDCIAINSGSSNINITQINCGPG-HGISVGSLGADGA 264 (409)
T ss_pred EEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEec-----CCCeEEecCCCCcEEEEEEEeECc-CCEEEccCCCCCC
Confidence 999999999743 457999999999999999998 789999975 56888888888755 57999873
Q ss_pred ---ceeEEEEeeEEcCC-ceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCC----------CceEEeEEEE
Q 017991 260 ---SSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGG----------SGSATNIQFL 325 (362)
Q Consensus 260 ---~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~----------~g~i~ni~~~ 325 (362)
.+||+|+||++.++ +|+.|.+.. ...+.++||+|+|++|.+..++|.|...... .-.|+||+|+
T Consensus 265 ~~~V~nV~v~n~~i~~t~~GirIKt~~--G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ 342 (409)
T PLN03010 265 NAKVSDVHVTHCTFNQTTNGARIKTWQ--GGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYV 342 (409)
T ss_pred CCeeEEEEEEeeEEeCCCcceEEEEec--CCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEE
Confidence 59999999999876 699998853 1346899999999999999999999865421 1278999999
Q ss_pred eEEEecC-CccEEEEeeeCCCCCCCCC
Q 017991 326 DVLMKNV-SNPIIIDQYYCDSPVPCAN 351 (362)
Q Consensus 326 ni~~~~~-~~~i~i~~~y~~~~~~c~~ 351 (362)
|++-... +.++.|. |+...||++
T Consensus 343 ni~GT~~~~~~i~l~---Cs~~~pC~n 366 (409)
T PLN03010 343 GFRGTTSNENAITLK---CSAITHCKD 366 (409)
T ss_pred eeEEEeCCCccEEEE---eCCCCCEec
Confidence 9998755 4577776 777778876
No 18
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.73 E-value=5.1e-16 Score=145.69 Aligned_cols=228 Identities=17% Similarity=0.237 Sum_probs=155.3
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCcEEEe-eeeeccCCCCCCceEEEEe---EEE-CCCCCCCcCCCCccccEEEeceeeEE
Q 017991 74 FANAWKKACSFPARTKIVFSAGYTFLI-HPIDISGPCKSRLTLEISG---TIV-APKDPDVWKGLNRRRWLYFNRVNHLT 148 (362)
Q Consensus 74 iq~Ai~~a~~~~gg~~v~~P~G~~Y~i-~~l~l~~~~~s~v~l~~~G---~i~-~~~~~~~~~~~~~~~~i~~~~~~ni~ 148 (362)
||+|+++ ++. |.+|.||+| +|.+ ++|.+. +++++|.++| ++. +.... .....+.. ..++++
T Consensus 1 iQ~Ai~~-A~~--GDtI~l~~G-~Y~~~~~l~I~---~~~Iti~G~g~~~tvid~~~~~------~~~~~i~v-~a~~Vt 66 (314)
T TIGR03805 1 LQEALIA-AQP--GDTIVLPEG-VFQFDRTLSLD---ADGVTIRGAGMDETILDFSGQV------GGAEGLLV-TSDDVT 66 (314)
T ss_pred CHhHHhh-CCC--CCEEEECCC-EEEcceeEEEe---CCCeEEEecCCCccEEecccCC------CCCceEEE-EeCCeE
Confidence 6999995 343 799999999 9987 688883 3788888775 332 22110 01122333 347788
Q ss_pred EEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEee-------CCCceeEEeceeeEEEEeEEEE
Q 017991 149 VQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVN-------SQQMHIAFTNCLRVVISNLEVI 221 (362)
Q Consensus 149 I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n-------~~~~~i~~~~~~nv~i~n~~I~ 221 (362)
|+|..+.+.. ..+|.+..|++++|+++++.. ...++|.+..|++++|+++++.
T Consensus 67 I~~ltI~~~~--------------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~ 126 (314)
T TIGR03805 67 LSDLAVENTK--------------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVR 126 (314)
T ss_pred EEeeEEEcCC--------------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEE
Confidence 8873322111 125777888899999988862 3467888888999999999988
Q ss_pred CCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC-ceeEEeecCCCCCcccEEeEEEEcEEE
Q 017991 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALI 300 (362)
Q Consensus 222 ~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~v~ni~i~n~~i 300 (362)
.. ..+||.+..|++++|++|+++....+|.+.. +.++.|+++++... .|+.+.++.... ....++++|+++++
T Consensus 127 g~----~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~~-~~~s~~~~v~~N~i 200 (314)
T TIGR03805 127 GA----SDAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGLP-QPGGSNVRVFDNII 200 (314)
T ss_pred CC----CcccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCCC-cCCccceEEECCEE
Confidence 72 3358988888899999999988888888875 67888888888754 477775542211 12447889999999
Q ss_pred eCCce------eEEEEeeCCCCceE----EeEEEEeEEEecCCc-cEEEEee
Q 017991 301 SNTQN------GVRIKTWQGGSGSA----TNIQFLDVLMKNVSN-PIIIDQY 341 (362)
Q Consensus 301 ~~~~~------gi~i~~~~g~~g~i----~ni~~~ni~~~~~~~-~i~i~~~ 341 (362)
.+... |-.+...+.+.|.+ ++++|+|+++.+... +|.+..+
T Consensus 201 ~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~ 252 (314)
T TIGR03805 201 FDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSY 252 (314)
T ss_pred ECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEec
Confidence 86532 11121123344654 899999999999976 7776543
No 19
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.69 E-value=9.1e-15 Score=140.29 Aligned_cols=221 Identities=15% Similarity=0.228 Sum_probs=132.1
Q ss_pred CcEEEEcCCcEEEeee---eeccCCCCCCc-eEEEE-eEEECCCCCCCcCCCCccccEEEeceeeEEEEeccEEecCCCe
Q 017991 87 RTKIVFSAGYTFLIHP---IDISGPCKSRL-TLEIS-GTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQE 161 (362)
Q Consensus 87 g~~v~~P~G~~Y~i~~---l~l~~~~~s~v-~l~~~-G~i~~~~~~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~ 161 (362)
..+|||+|| +|.++. ++| ++++ .++++ |.++.. .+.+.....|+.|.|.|+++|....
T Consensus 232 ~~~lYF~PG-Vy~ig~~~~l~L----~sn~~~VYlApGAyVkG------------Af~~~~~~~nv~i~G~GVLSGe~Yv 294 (582)
T PF03718_consen 232 KDTLYFKPG-VYWIGSDYHLRL----PSNTKWVYLAPGAYVKG------------AFEYTDTQQNVKITGRGVLSGEQYV 294 (582)
T ss_dssp SSEEEE-SE-EEEEBCTC-EEE-----TT--EEEE-TTEEEES-------------EEE---SSEEEEESSSEEE-TTS-
T ss_pred cceEEeCCc-eEEeCCCccEEE----CCCccEEEEcCCcEEEE------------EEEEccCCceEEEEeeEEEcCccee
Confidence 579999999 999964 888 7774 78887 655431 3333457799999999999998766
Q ss_pred eeecccccCC----CCC-CCCCCeEEEE---EeecceEEEceEEeeCCCceeEEecee----eEEEEeEEEECCCCCCCC
Q 017991 162 WWSRSCKINT----TNP-CRHAPTAITF---HKCKNLKVQNLRVVNSQQMHIAFTNCL----RVVISNLEVIAPAESPNT 229 (362)
Q Consensus 162 ~~~~~~~~~~----~~~-~~~~~~~i~~---~~~~nv~I~~v~i~n~~~~~i~~~~~~----nv~i~n~~I~~~~~~~~~ 229 (362)
|......... ... ....-+++.+ ..+++++++|++|.++|.|.+.+.... +..|+|.++.... -.++
T Consensus 295 y~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~qt 373 (582)
T PF03718_consen 295 YEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YFQT 373 (582)
T ss_dssp TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT-
T ss_pred EeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-Eecc
Confidence 5332111100 000 1112245553 456799999999999999999998544 5899999998743 3689
Q ss_pred CeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCc-e--eEEeecCCCCCcccEEeEEEEcEEEeCC---
Q 017991 230 DGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGH-G--ISIGSLGKSNSSVRIHDIMVYGALISNT--- 303 (362)
Q Consensus 230 DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~-g--i~igs~g~~~~~~~v~ni~i~n~~i~~~--- 303 (362)
|||.+. ++-+|+||+++..||+|-+.. .++.|+||+++..+ | +.+|. ....+++|.|+|+.+..+
T Consensus 374 DGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW-----~pr~isnv~veni~IIh~r~~ 444 (582)
T PF03718_consen 374 DGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGW-----TPRNISNVSVENIDIIHNRWI 444 (582)
T ss_dssp ---B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--C-----S---EEEEEEEEEEEEE---S
T ss_pred CCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeec-----cccccCceEEeeeEEEeeeee
Confidence 999987 477889999999999996665 68999999998643 2 77776 345699999999999875
Q ss_pred ------ceeEEEEee-C---CC------CceEEeEEEEeEEEecCCc
Q 017991 304 ------QNGVRIKTW-Q---GG------SGSATNIQFLDVLMKNVSN 334 (362)
Q Consensus 304 ------~~gi~i~~~-~---g~------~g~i~ni~~~ni~~~~~~~ 334 (362)
..+|.-.+. . +. .-.|++++|+|+++++.-.
T Consensus 445 ~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~ 491 (582)
T PF03718_consen 445 WHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCP 491 (582)
T ss_dssp SGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-
T ss_pred cccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccc
Confidence 234433221 1 11 1368999999999998743
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=1.3e-10 Score=114.56 Aligned_cols=141 Identities=16% Similarity=0.289 Sum_probs=115.0
Q ss_pred ccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCC---ceeEEeceeeE
Q 017991 137 RWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ---MHIAFTNCLRV 213 (362)
Q Consensus 137 ~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~---~~i~~~~~~nv 213 (362)
..+.+.++.|+.++|..+ ....||. +++..|+|++++|++|.+... .++++..|+||
T Consensus 239 ~~~~l~~c~NV~~~g~~i---~ns~~~~-----------------~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~Nv 298 (542)
T COG5434 239 RTVVLKGCRNVLLEGLNI---KNSPLWT-----------------VHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNV 298 (542)
T ss_pred ceEEEeccceEEEeeeEe---cCCCcEE-----------------EeeecccCceecceEEECCCCCCCCccccccceeE
Confidence 457788999999999443 3344564 899999999999999997543 47999999999
Q ss_pred EEEeEEEECCCCCCCCCeeeec------------CccCEEEEeeEEecCCccEEEcC----CceeEEEEeeEEcC-Ccee
Q 017991 214 VISNLEVIAPAESPNTDGIHIS------------ASRGVEVKNSIVGTGDDCISIVG----NSSLIRIRNFACGP-GHGI 276 (362)
Q Consensus 214 ~i~n~~I~~~~~~~~~DGI~~~------------~s~nv~I~n~~i~~gdD~i~i~s----~~~ni~i~n~~~~~-~~gi 276 (362)
.|++|+|.. ..|.|.+. .+++++|.||++..|+.++.+.+ +.+||+++||.+.+ ..|+
T Consensus 299 lI~~~~fdt-----gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GL 373 (542)
T COG5434 299 LIEGCRFDT-----GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGL 373 (542)
T ss_pred EEeccEEec-----CCceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCccee
Confidence 999999998 44445443 37889999999999999988876 47999999999987 5799
Q ss_pred EEeecCCCCCcccEEeEEEEcEEEeCCc
Q 017991 277 SIGSLGKSNSSVRIHDIMVYGALISNTQ 304 (362)
Q Consensus 277 ~igs~g~~~~~~~v~ni~i~n~~i~~~~ 304 (362)
.|++.- ...+.++||+|+++.+.+..
T Consensus 374 Rikt~~--~~gG~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 374 RIKTND--GRGGGVRNIVFEDNKMRNVK 399 (542)
T ss_pred eeeeec--ccceeEEEEEEecccccCcc
Confidence 999842 34579999999999998874
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.23 E-value=4.5e-09 Score=98.87 Aligned_cols=162 Identities=22% Similarity=0.287 Sum_probs=124.6
Q ss_pred eeEEEEecc----EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEeceeeEEEEeEEE
Q 017991 145 NHLTVQGGG----TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEV 220 (362)
Q Consensus 145 ~ni~I~G~G----~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I 220 (362)
++++|+|.| ++|+.+.. .....+. ..+++|+|+++++.++..+++.+..|++++|+++++
T Consensus 32 ~~Iti~G~g~~~tvid~~~~~---------------~~~~~i~-v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i 95 (314)
T TIGR03805 32 DGVTIRGAGMDETILDFSGQV---------------GGAEGLL-VTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRV 95 (314)
T ss_pred CCeEEEecCCCccEEecccCC---------------CCCceEE-EEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEE
Confidence 678888865 36665531 1122343 458999999999999999999999999999999999
Q ss_pred ECCCC---CCCCCeeeecCccCEEEEeeEEecC-CccEEEcCCceeEEEEeeEEcCCc-eeEEeecCCCCCcccEEeEEE
Q 017991 221 IAPAE---SPNTDGIHISASRGVEVKNSIVGTG-DDCISIVGNSSLIRIRNFACGPGH-GISIGSLGKSNSSVRIHDIMV 295 (362)
Q Consensus 221 ~~~~~---~~~~DGI~~~~s~nv~I~n~~i~~g-dD~i~i~s~~~ni~i~n~~~~~~~-gi~igs~g~~~~~~~v~ni~i 295 (362)
..... ....+||.+..|++++|++|+++.. |++|.++. +++++|+||++...+ |+.+-. ..++.+
T Consensus 96 ~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v 165 (314)
T TIGR03805 96 EWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADV 165 (314)
T ss_pred EeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEE
Confidence 74321 2367899999999999999999985 55888876 789999999998764 777754 257899
Q ss_pred EcEEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 296 YGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 296 ~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
+|+++.+...|+.+-..++.+ ..-++++++++++.+.
T Consensus 166 ~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 166 YNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred ECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 999999988898886544432 2346788887777655
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.93 E-value=1.9e-08 Score=89.19 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=14.4
Q ss_pred CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEE
Q 017991 236 ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFAC 270 (362)
Q Consensus 236 ~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~ 270 (362)
+++||.|+|+.+.+-| |++. ++||+|+|..+
T Consensus 154 ~~kNvei~ns~l~sKD---AFWn-~eNVtVyDS~i 184 (277)
T PF12541_consen 154 YCKNVEIHNSKLDSKD---AFWN-CENVTVYDSVI 184 (277)
T ss_pred ceeeEEEEccEEeccc---cccc-CCceEEEcceE
Confidence 3555555555555433 1233 44555554444
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.82 E-value=4.9e-08 Score=81.84 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=96.7
Q ss_pred EEEEeecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCce
Q 017991 182 ITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSS 261 (362)
Q Consensus 182 i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ 261 (362)
|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+++....++++++|.+.....++.+. +..
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~~ 76 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GSS 76 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-C
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ecC
Confidence 66777888999999999999999999999999999999998 567899988889999999999877666666 578
Q ss_pred eEEEEeeEEcCCc--eeEEeecCCCCCcccEEeEEEEcEEEeCCc-eeEEEEeeCCCCceEEeEEEEeEEEecCC-ccEE
Q 017991 262 LIRIRNFACGPGH--GISIGSLGKSNSSVRIHDIMVYGALISNTQ-NGVRIKTWQGGSGSATNIQFLDVLMKNVS-NPII 337 (362)
Q Consensus 262 ni~i~n~~~~~~~--gi~igs~g~~~~~~~v~ni~i~n~~i~~~~-~gi~i~~~~g~~g~i~ni~~~ni~~~~~~-~~i~ 337 (362)
+++|++|.+.... |+.+.. ...+++|++++|.+.. .|+.+.... -.+++++++++.+.. .+|.
T Consensus 77 ~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~~~~~gi~ 143 (158)
T PF13229_consen 77 NITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISNNGGNGIY 143 (158)
T ss_dssp S-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEECESSEEEE
T ss_pred CceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEeCcceeEE
Confidence 9999999998653 666632 2357899999999876 688877533 236777777777764 4664
Q ss_pred E
Q 017991 338 I 338 (362)
Q Consensus 338 i 338 (362)
+
T Consensus 144 ~ 144 (158)
T PF13229_consen 144 L 144 (158)
T ss_dssp -
T ss_pred E
Confidence 4
No 24
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.73 E-value=4.1e-07 Score=87.35 Aligned_cols=141 Identities=17% Similarity=0.212 Sum_probs=81.8
Q ss_pred EEEEEeecceEEEceEEeeCC------CceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEec-CCcc
Q 017991 181 AITFHKCKNLKVQNLRVVNSQ------QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT-GDDC 253 (362)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~-gdD~ 253 (362)
.+.-..+++|+|++++|.++. -..|.+..|++++|++++|.+.. .-||+++.|+ ..|.++.|.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 455567899999999999865 33688899999999999999842 2456666555 3333333332 2333
Q ss_pred EEEcCCceeEEEEeeEEcCCc--eeEEeec--C--------------------CCCCc-----ccEEeEEEEcEEEeCCc
Q 017991 254 ISIVGNSSLIRIRNFACGPGH--GISIGSL--G--------------------KSNSS-----VRIHDIMVYGALISNTQ 304 (362)
Q Consensus 254 i~i~s~~~ni~i~n~~~~~~~--gi~igs~--g--------------------~~~~~-----~~v~ni~i~n~~i~~~~ 304 (362)
|.++. +.+.+|++|++.+.. ||.+-.. + ..+.. ....+++|++|++.++.
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 33333 344444444443321 2222211 0 00000 12467888999998888
Q ss_pred -eeEEEEeeCCCCceEEeEEEEeEEEecCCc
Q 017991 305 -NGVRIKTWQGGSGSATNIQFLDVLMKNVSN 334 (362)
Q Consensus 305 -~gi~i~~~~g~~g~i~ni~~~ni~~~~~~~ 334 (362)
.||++.+ .+|+.|+++++++...
T Consensus 262 ~dgI~~ns-------ss~~~i~~N~~~~~R~ 285 (455)
T TIGR03808 262 YSAVRGNS-------ASNIQITGNSVSDVRE 285 (455)
T ss_pred cceEEEEc-------ccCcEEECcEeeeeee
Confidence 6888875 3344455555544443
No 25
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.72 E-value=1.3e-06 Score=78.39 Aligned_cols=193 Identities=21% Similarity=0.228 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEcCCcEEEee-----eeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEecee
Q 017991 71 TEAFANAWKKACSFPARTKIVFSAGYTFLIH-----PIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVN 145 (362)
Q Consensus 71 t~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~-----~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ 145 (362)
-+.|++|++.| +. |.+|++-+| +|.-. ||.+ ++.++|+++..-+.. .
T Consensus 15 ~~Ti~~A~~~a-~~--g~~i~l~~G-tY~~~~ge~fPi~i----~~gVtl~G~~~~kG~--------------------~ 66 (246)
T PF07602_consen 15 FKTITKALQAA-QP--GDTIQLAPG-TYSEATGETFPIII----KPGVTLIGNESNKGQ--------------------I 66 (246)
T ss_pred HHHHHHHHHhC-CC--CCEEEECCc-eeccccCCcccEEe----cCCeEEeecccCCCc--------------------c
Confidence 36899999953 33 789999999 99763 6778 788888765321110 1
Q ss_pred eEEEEecc---EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeC---CCceeEEeceeeEEEEeEE
Q 017991 146 HLTVQGGG---TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNS---QQMHIAFTNCLRVVISNLE 219 (362)
Q Consensus 146 ni~I~G~G---~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~---~~~~i~~~~~~nv~i~n~~ 219 (362)
.+.+.|.+ +|+|.+... ....+.+....+.+|+++++.|+ .+.++.+..+ +.+|+|++
T Consensus 67 ~il~~g~~~~~~I~g~~~~~---------------~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nnt 130 (246)
T PF07602_consen 67 DILITGGGTGPTISGGGPDL---------------SGQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNT 130 (246)
T ss_pred eEEecCCceEEeEeccCccc---------------cceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeE
Confidence 22222211 233333110 01235666678888888888886 2334544444 56666666
Q ss_pred EECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC-CceeEEeecCCCCCcccEEeEEEEcE
Q 017991 220 VIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP-GHGISIGSLGKSNSSVRIHDIMVYGA 298 (362)
Q Consensus 220 I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~-~~gi~igs~g~~~~~~~v~ni~i~n~ 298 (362)
|... ..+||.+..+. .+....++.|+++.+.. ..|+++... .. .+. -.++|+
T Consensus 131 f~~~----~~~GI~v~g~~-----------------~~~~i~~~vI~GN~~~~~~~Gi~i~~~----~~-~~~-n~I~NN 183 (246)
T PF07602_consen 131 FTNN----GREGIFVTGTS-----------------ANPGINGNVISGNSIYFNKTGISISDN----AA-PVE-NKIENN 183 (246)
T ss_pred EECC----ccccEEEEeee-----------------cCCcccceEeecceEEecCcCeEEEcc----cC-Ccc-ceeecc
Confidence 6652 23444332210 11224555677766654 357877652 22 223 355888
Q ss_pred EEeCCceeEEEEeeC---CC--CceEEeEEEEeEEEecCCc
Q 017991 299 LISNTQNGVRIKTWQ---GG--SGSATNIQFLDVLMKNVSN 334 (362)
Q Consensus 299 ~i~~~~~gi~i~~~~---g~--~g~i~ni~~~ni~~~~~~~ 334 (362)
.|.+...||.+.... |. .+.+.+=+|+|+...+..+
T Consensus 184 ~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~ 224 (246)
T PF07602_consen 184 IIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNN 224 (246)
T ss_pred EEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEe
Confidence 888776687765332 22 2235555577766666543
No 26
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.68 E-value=3.5e-07 Score=81.21 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=76.8
Q ss_pred EEeecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeE
Q 017991 184 FHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLI 263 (362)
Q Consensus 184 ~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni 263 (362)
+.+|+|+.++++.+... ..|+.|+||.|+|.++.+.+ .+|.|+||+|.|+.|... .+.=.++|+
T Consensus 133 ~m~s~ni~id~l~~~Gn----Y~Fq~~kNvei~ns~l~sKD--------AFWn~eNVtVyDS~i~GE----YLgW~SkNl 196 (277)
T PF12541_consen 133 FMNSENIYIDNLVLDGN----YSFQYCKNVEIHNSKLDSKD--------AFWNCENVTVYDSVINGE----YLGWNSKNL 196 (277)
T ss_pred eeeccceEEeceEEeCC----EEeeceeeEEEEccEEeccc--------ccccCCceEEEcceEeee----EEEEEcCCe
Confidence 44567777777776642 46789999999999999853 267899999999999842 122237999
Q ss_pred EEEeeEEcCCceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEE
Q 017991 264 RIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRI 309 (362)
Q Consensus 264 ~i~n~~~~~~~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i 309 (362)
++-||++.+..|+. .++|++++||+|.+++..+..
T Consensus 197 tliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 197 TLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred EEEEeEEeccCccE-----------eecceEEeCcEeecceeeeee
Confidence 99999998776665 468999999999998776654
No 27
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.65 E-value=9e-06 Score=79.16 Aligned_cols=212 Identities=15% Similarity=0.154 Sum_probs=114.2
Q ss_pred CcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCC------CCcCCC--C------ccccEE---EeceeeEEE
Q 017991 87 RTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDP------DVWKGL--N------RRRWLY---FNRVNHLTV 149 (362)
Q Consensus 87 g~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~------~~~~~~--~------~~~~i~---~~~~~ni~I 149 (362)
..+|||.+| .|.-+.+.... ..+++.+.+.|+|...... ..|... . .-.++. ..+..++.+
T Consensus 256 ~~~VYlApG-AyVkGAf~~~~-~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~ 333 (582)
T PF03718_consen 256 TKWVYLAPG-AYVKGAFEYTD-TQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTC 333 (582)
T ss_dssp --EEEE-TT-EEEES-EEE----SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEE
T ss_pred ccEEEEcCC-cEEEEEEEEcc-CCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEE
Confidence 579999999 99999887641 2567777788888865422 112100 0 012233 345668888
Q ss_pred EeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeec----ceEEEceEEeeCCCceeE-EeceeeEEEEeEEEECCC
Q 017991 150 QGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCK----NLKVQNLRVVNSQQMHIA-FTNCLRVVISNLEVIAPA 224 (362)
Q Consensus 150 ~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----nv~I~~v~i~n~~~~~i~-~~~~~nv~i~n~~I~~~~ 224 (362)
+|.-+ +...+|. +.+.+-. +..|+++++..+..|.-+ +.-+.+-+|+||.+++
T Consensus 334 ~GiTI---~~pP~~S-----------------m~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~-- 391 (582)
T PF03718_consen 334 EGITI---NDPPFHS-----------------MDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV-- 391 (582)
T ss_dssp ES-EE---E--SS-S-----------------EEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE--
T ss_pred EeeEe---cCCCcce-----------------EEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe--
Confidence 88332 2222333 5555433 478999999987666433 3345788899999999
Q ss_pred CCCCCCeeeecCccCEEEEeeEEecCCcc--EEEcC---CceeEEEEeeEEc--------C--CceeEEeecCC----CC
Q 017991 225 ESPNTDGIHISASRGVEVKNSIVGTGDDC--ISIVG---NSSLIRIRNFACG--------P--GHGISIGSLGK----SN 285 (362)
Q Consensus 225 ~~~~~DGI~~~~s~nv~I~n~~i~~gdD~--i~i~s---~~~ni~i~n~~~~--------~--~~gi~igs~g~----~~ 285 (362)
+.|+|.+.. .++.|+||.++..+.+ +-++- ..+||.|+|+.+- . ..+|-..+-.- ..
T Consensus 392 ---nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~ 467 (582)
T PF03718_consen 392 ---NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMAST 467 (582)
T ss_dssp ---SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS
T ss_pred ---cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCC
Confidence 889998887 4999999999974332 22221 2678899998652 1 23433222110 01
Q ss_pred C----cccEEeEEEEcEEEeCCce-eEEEEeeCCCCceEEeEEEEeEEEe
Q 017991 286 S----SVRIHDIMVYGALISNTQN-GVRIKTWQGGSGSATNIQFLDVLMK 330 (362)
Q Consensus 286 ~----~~~v~ni~i~n~~i~~~~~-gi~i~~~~g~~g~i~ni~~~ni~~~ 330 (362)
+ ...+++++|+|+++.+.-. -++|..- +.-.|+.++|+.+.
T Consensus 468 ~~adp~~ti~~~~~~nv~~EG~~~~l~ri~pl----qn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 468 KTADPSTTIRNMTFSNVRCEGMCPCLFRIYPL----QNYDNLVIKNVHFE 513 (582)
T ss_dssp --BEEEEEEEEEEEEEEEEECCE-ECEEE--S----EEEEEEEEEEEEEC
T ss_pred CCCCcccceeeEEEEeEEEecccceeEEEeec----CCCcceEEEEeecc
Confidence 1 2256899999999998543 4666642 34555666666665
No 28
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.63 E-value=1.1e-06 Score=73.51 Aligned_cols=129 Identities=22% Similarity=0.252 Sum_probs=87.9
Q ss_pred EEEEEeecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCC-ccEEEcCC
Q 017991 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGD-DCISIVGN 259 (362)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gd-D~i~i~s~ 259 (362)
++.+..+..++|++.+|.+ ...++.+....+++++++.+... ..|+.+..+.+++|++|.+.... .++.+...
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~-----~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~ 98 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN-----GSGIYVSGSSNITIENNRIENNGDYGIYISNS 98 (158)
T ss_dssp CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES------SEEEECCS-CS-EEES-EEECSSS-SCE-TCE
T ss_pred EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc-----cceEEEEecCCceecCcEEEcCCCccEEEecc
Confidence 5888888899999999999 78889999999999999999983 37899999999999999999864 48888742
Q ss_pred ceeEEEEeeEEcCC--ceeEEeecCCCCCcccEEeEEEEcEEEeCCc-eeEEEEeeCCCCceEEeEEEEeEE
Q 017991 260 SSLIRIRNFACGPG--HGISIGSLGKSNSSVRIHDIMVYGALISNTQ-NGVRIKTWQGGSGSATNIQFLDVL 328 (362)
Q Consensus 260 ~~ni~i~n~~~~~~--~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~-~gi~i~~~~g~~g~i~ni~~~ni~ 328 (362)
..+++|++|++... .|+.+..- . -.++.++++++.+.. .|+.+....+ ++++.|++
T Consensus 99 ~~~~~i~~n~~~~~~~~gi~~~~~----~---~~~~~i~~n~i~~~~~~gi~~~~~~~------~~~v~~n~ 157 (158)
T PF13229_consen 99 SSNVTIENNTIHNNGGSGIYLEGG----S---SPNVTIENNTISNNGGNGIYLISGSS------NCTVTNNT 157 (158)
T ss_dssp ECS-EEES-EEECCTTSSCEEEEC----C-----S-EEECEEEECESSEEEE-TT-SS--------EEES-E
T ss_pred CCCEEEEeEEEEeCcceeEEEECC----C---CCeEEEEEEEEEeCcceeEEEECCCC------eEEEECCC
Confidence 67899999999864 57777662 1 347889999998875 6777653211 56666554
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.62 E-value=2.8e-06 Score=76.79 Aligned_cols=113 Identities=23% Similarity=0.266 Sum_probs=90.3
Q ss_pred EEEEEeecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCc
Q 017991 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNS 260 (362)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~ 260 (362)
.+.+..+.+++|++.++.+. ..++++..+.+++|+++.+.. +..||.+..+.+.+|+++.|.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 56888889999999988887 788889999999999999887 4488998888777999999988777887776 5
Q ss_pred eeEEEEeeEEcCC-ceeEEeecCCCCCcccEEeEEEEcEEEeCC-ceeEEE
Q 017991 261 SLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNT-QNGVRI 309 (362)
Q Consensus 261 ~ni~i~n~~~~~~-~gi~igs~g~~~~~~~v~ni~i~n~~i~~~-~~gi~i 309 (362)
.+.+|+++++... .|+.+.. . .+.+|++++|.+. ..||.+
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~----s-----~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSS----S-----SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred CceEEECcEEeCCCEEEEEEe----C-----CCCEEECeEEeCCCccceEE
Confidence 6678888888643 4777755 1 5778888888887 778883
No 30
>PLN02634 probable pectinesterase
Probab=98.61 E-value=3.4e-05 Score=72.99 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=81.2
Q ss_pred EeecceEEEceEEeeCCC---------ceeE-EeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccE
Q 017991 185 HKCKNLKVQNLRVVNSQQ---------MHIA-FTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCI 254 (362)
Q Consensus 185 ~~~~nv~I~~v~i~n~~~---------~~i~-~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i 254 (362)
..++++..+|++|+|... -.+. ....+...+.+|++.+.. |-+.... .+-..+||+|...=|=|
T Consensus 146 V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~Q-----DTL~~~~-gR~yf~~CyIeG~VDFI 219 (359)
T PLN02634 146 VYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQ-----DTLCDDA-GRHYFKECYIEGSIDFI 219 (359)
T ss_pred EECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEeccc-----ceeeeCC-CCEEEEeeEEcccccEE
Confidence 347899999999998632 1122 235788999999999843 4444333 47888999998654432
Q ss_pred EEcCCceeEEEEeeEEcCC---ceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEe
Q 017991 255 SIVGNSSLIRIRNFACGPG---HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMK 330 (362)
Q Consensus 255 ~i~s~~~ni~i~n~~~~~~---~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~ 330 (362)
++ .-...++||++..- .| .|-.-++ .....-....|.||++.+... ..-|++ +.-..+.|.+..|.
T Consensus 220 -FG--~g~a~Fe~C~I~s~~~~~g-~ITA~~R-~~~~~~~GfvF~~C~vtg~g~-----~yLGRPW~~yarvVf~~t~l~ 289 (359)
T PLN02634 220 -FG--NGRSMYKDCELHSIASRFG-SIAAHGR-TCPEEKTGFAFVGCRVTGTGP-----LYVGRAMGQYSRIVYAYTYFD 289 (359)
T ss_pred -cC--CceEEEeccEEEEecCCCc-EEEeCCC-CCCCCCcEEEEEcCEEcCCcc-----eEecCCCCCcceEEEEecccC
Confidence 23 34668889987632 23 1212111 122334678999999987521 222332 34567888888887
Q ss_pred cC
Q 017991 331 NV 332 (362)
Q Consensus 331 ~~ 332 (362)
+.
T Consensus 290 ~~ 291 (359)
T PLN02634 290 AV 291 (359)
T ss_pred CE
Confidence 75
No 31
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=1.3e-05 Score=72.57 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=37.6
Q ss_pred EEEeceeeEEEEecc---EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCC-----CceeEE-ec
Q 017991 139 LYFNRVNHLTVQGGG---TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQ-----QMHIAF-TN 209 (362)
Q Consensus 139 i~~~~~~ni~I~G~G---~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~-----~~~i~~-~~ 209 (362)
+.+..+.|.+|.|.| ++-|- .|.+..+.||.|++++|...+ ...|.+ ..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~----------------------gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~ 152 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGG----------------------GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDD 152 (345)
T ss_pred EEEeeccccEEEeeccccEEEec----------------------eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccC
Confidence 566677888888854 33332 266666788888888887755 223444 44
Q ss_pred eeeEEEEeEEEEC
Q 017991 210 CLRVVISNLEVIA 222 (362)
Q Consensus 210 ~~nv~i~n~~I~~ 222 (362)
.+|+-|++|++..
T Consensus 153 ~~nIWIDH~tf~~ 165 (345)
T COG3866 153 GHNIWIDHNTFSG 165 (345)
T ss_pred CeEEEEEeeEecc
Confidence 5555555555544
No 32
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.59 E-value=4.4e-06 Score=80.16 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCcEEE
Q 017991 70 DTEAFANAWKKACSFPARTKIVFSAGYTFL 99 (362)
Q Consensus 70 dt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~ 99 (362)
+.++||+||+.| +. |.+|+++.| +|.
T Consensus 3 s~~~lq~Ai~~a-~p--GD~I~L~~G-ty~ 28 (425)
T PF14592_consen 3 SVAELQSAIDNA-KP--GDTIVLADG-TYK 28 (425)
T ss_dssp SHHHHHHHHHH---T--T-EEEE-SE-EEE
T ss_pred CHHHHHHHHHhC-CC--CCEEEECCc-eee
Confidence 468999999954 33 799999999 995
No 33
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.49 E-value=6.2e-06 Score=74.58 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=42.2
Q ss_pred EEEEEeecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCc
Q 017991 181 AITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNS 260 (362)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~ 260 (362)
.|.+..+++++|++.++.+.. .++.+..+.+.+|++.+|.. +..||.+..+.+.+|+++.|.+...+|.+...
T Consensus 59 GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~~-----n~~GI~l~~s~~~~I~~N~i~~~~~GI~l~~s- 131 (236)
T PF05048_consen 59 GIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNTISNNTISN-----NGYGIYLYGSSNNTISNNTISNNGYGIYLSSS- 131 (236)
T ss_pred EEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEecC-----CCceEEEeeCCceEEECcEEeCCCEEEEEEeC-
Confidence 355555555555555555544 44555555444555555554 22355555555555555555544555554442
Q ss_pred eeEEEEeeEEcC
Q 017991 261 SLIRIRNFACGP 272 (362)
Q Consensus 261 ~ni~i~n~~~~~ 272 (362)
.+.+|+++++..
T Consensus 132 ~~n~I~~N~i~~ 143 (236)
T PF05048_consen 132 SNNTITGNTISN 143 (236)
T ss_pred CCCEEECeEEeC
Confidence 344444544443
No 34
>PLN02480 Probable pectinesterase
Probab=98.46 E-value=6.3e-05 Score=71.09 Aligned_cols=131 Identities=10% Similarity=0.061 Sum_probs=82.5
Q ss_pred EEeecceEEEceEEeeCCC---------ceeEE-eceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCcc
Q 017991 184 FHKCKNLKVQNLRVVNSQQ---------MHIAF-TNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDC 253 (362)
Q Consensus 184 ~~~~~nv~I~~v~i~n~~~---------~~i~~-~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~ 253 (362)
...+++++++|++|+|... -.+.+ ..++.+.+.||++.+.. |-+.... .+-..+||+|...=|=
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~Q-----DTLy~~~-gR~yf~~C~IeG~VDF 201 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTH-----NTLFDYK-GRHYYHSCYIQGSIDF 201 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEeccc-----ceeEeCC-CCEEEEeCEEEeeeeE
Confidence 3457899999999999721 23333 46889999999999843 4444333 4678899999865342
Q ss_pred EEEcCCceeEEEEeeEEcCC-------ce-eEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCCC-ceEEeEEE
Q 017991 254 ISIVGNSSLIRIRNFACGPG-------HG-ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQF 324 (362)
Q Consensus 254 i~i~s~~~ni~i~n~~~~~~-------~g-i~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~ 324 (362)
| ++ .-...++||++..- .| +.-.+ .....-....|.||++.+.. -+ +-|++ +.-..+.|
T Consensus 202 I-FG--~g~a~fe~C~i~s~~~~~~~~~G~ITA~~----r~~~~~~GfvF~~C~i~g~g-~~----yLGRPW~~ya~vVf 269 (343)
T PLN02480 202 I-FG--RGRSIFHNCEIFVIADRRVKIYGSITAHN----RESEDNSGFVFIKGKVYGIG-EV----YLGRAKGAYSRVIF 269 (343)
T ss_pred E-cc--ceeEEEEccEEEEecCCCCCCceEEEcCC----CCCCCCCEEEEECCEEcccC-ce----eeecCCCCcceEEE
Confidence 2 22 34778999987531 23 22222 11133457899999998742 12 22322 34677888
Q ss_pred EeEEEecC
Q 017991 325 LDVLMKNV 332 (362)
Q Consensus 325 ~ni~~~~~ 332 (362)
.|..|.+.
T Consensus 270 ~~t~l~~~ 277 (343)
T PLN02480 270 AKTYLSKT 277 (343)
T ss_pred EecccCCe
Confidence 88888654
No 35
>PLN02176 putative pectinesterase
Probab=98.45 E-value=0.00024 Score=67.01 Aligned_cols=199 Identities=13% Similarity=0.108 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeE
Q 017991 70 DTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (362)
Q Consensus 70 dt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni 147 (362)
|-..||+||+++.... ..-+|+|.+| +|.-+ +.+ +. +.+++|+++|. +..
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~Ip~~--k~~vtl~G~g~------------------------~~T 101 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNG-IYREK-VTIPKE--KGYIYMQGKGI------------------------EKT 101 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCc-EEEEE-EEECCC--CccEEEEEcCC------------------------Cce
Confidence 5778999999654322 2347889999 99754 222 11 55777776541 011
Q ss_pred EEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCC----------cee-EEeceeeEEEE
Q 017991 148 TVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ----------MHI-AFTNCLRVVIS 216 (362)
Q Consensus 148 ~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~----------~~i-~~~~~~nv~i~ 216 (362)
.|.- +.... ......+.+ .+.++..+|++|+|... -.+ .....+...+.
T Consensus 102 iIt~----~~~~~---------------t~~saT~~v-~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~ 161 (340)
T PLN02176 102 IIAY----GDHQA---------------TDTSATFTS-YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAII 161 (340)
T ss_pred EEEE----eCCcc---------------cccceEEEE-ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEE
Confidence 1110 00000 000012333 57899999999998632 122 22357888899
Q ss_pred eEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC---------CceeEEeecCCCCCc
Q 017991 217 NLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP---------GHGISIGSLGKSNSS 287 (362)
Q Consensus 217 n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~---------~~gi~igs~g~~~~~ 287 (362)
+|++.+.. |-+.... ..-..++|+|...=|=| ++ .....++||++.. ..| .|-.-+. ...
T Consensus 162 ~C~f~G~Q-----DTLy~~~-gRqyf~~CyIeG~VDFI-FG--~a~a~Fe~C~I~s~~~~~~~~~~~g-~ITA~~r-~~~ 230 (340)
T PLN02176 162 DSSFDGFQ-----DTLFDGK-GRHYYKRCVISGGIDFI-FG--YAQSIFEGCTLKLTLGIYPPNEPYG-TITAQGR-PSP 230 (340)
T ss_pred ccEEeccc-----ceeEeCC-cCEEEEecEEEecccEE-ec--CceEEEeccEEEEecccCCCCCCcE-EEEeCCC-CCC
Confidence 99998743 4444333 46788899998654433 22 2467888887752 112 1111111 112
Q ss_pred ccEEeEEEEcEEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 288 VRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 288 ~~v~ni~i~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
..-....|.||++.+.. +.+-|++ +.-..+.|.|..|.+.
T Consensus 231 ~~~~GfvF~~C~itg~g-----~~yLGRPW~~yarvVf~~t~m~~~ 271 (340)
T PLN02176 231 SDKGGFVFKDCTVTGVG-----KALLGRAWGSYARVIFYRSRFSDV 271 (340)
T ss_pred CCCcEEEEECCEEccCc-----ceeeecCCCCCceEEEEecCcCCe
Confidence 23457888999988742 2222332 3356788888777765
No 36
>smart00656 Amb_all Amb_all domain.
Probab=98.43 E-value=6.6e-06 Score=71.81 Aligned_cols=100 Identities=19% Similarity=0.218 Sum_probs=73.6
Q ss_pred ceeEEeceeeEEEEeEEEECCCCC--CCCCeeeecCccCEEEEeeEEecC----------CccEEEcCCceeEEEEeeEE
Q 017991 203 MHIAFTNCLRVVISNLEVIAPAES--PNTDGIHISASRGVEVKNSIVGTG----------DDCISIVGNSSLIRIRNFAC 270 (362)
Q Consensus 203 ~~i~~~~~~nv~i~n~~I~~~~~~--~~~DGI~~~~s~nv~I~n~~i~~g----------dD~i~i~s~~~ni~i~n~~~ 270 (362)
.++.+..++||.|+|++|+..... .+.|+|.+..+++|.|++|.+..+ |..+.++.++.+++|++|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 445555577888888888865431 367999999999999999999986 55567788899999999999
Q ss_pred cCCc-eeEEeecCCCCCcccEEeEEEEcEEEeCC
Q 017991 271 GPGH-GISIGSLGKSNSSVRIHDIMVYGALISNT 303 (362)
Q Consensus 271 ~~~~-gi~igs~g~~~~~~~v~ni~i~n~~i~~~ 303 (362)
..-+ +.-+|+- ..+......+|++.+|.+.++
T Consensus 112 ~~h~~~~liG~~-d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 112 HNHWKVMLLGHS-DSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ecCCEEEEEccC-CCccccccceEEEECcEEcCc
Confidence 7543 6777762 111222356899999999775
No 37
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.40 E-value=1.2e-05 Score=72.21 Aligned_cols=206 Identities=21% Similarity=0.298 Sum_probs=113.1
Q ss_pred CCCCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEE-Ee-eeeeccCCCCCCceEEEEeEEECCCC
Q 017991 49 SKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTF-LI-HPIDISGPCKSRLTLEISGTIVAPKD 126 (362)
Q Consensus 49 ~~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y-~i-~~l~l~~~~~s~v~l~~~G~i~~~~~ 126 (362)
.++..++++.||.. .|=-++|..|+.+ +.+|++|+|-+- .+ .++.+ +..-+|.+.|.+...
T Consensus 29 ~~~~~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl~cenint~ifi----p~gktl~v~g~l~gn-- 91 (464)
T PRK10123 29 LPARQSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFI----PPGKTLHILGSLRGN-- 91 (464)
T ss_pred cCCCceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCccEecccccceEe----CCCCeEEEEEEeecC--
Confidence 34667999999964 2345778888864 789999999322 11 45666 778888888877653
Q ss_pred CCCcCCCCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEE-eecceEEEceEEee-CCCce
Q 017991 127 PDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFH-KCKNLKVQNLRVVN-SQQMH 204 (362)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~nv~I~~v~i~n-~~~~~ 204 (362)
+...++.-++++ +.|. + .++-+.+.+. ..+++.|+++.+.. .|-..
T Consensus 92 -------grgrfvlqdg~q---v~ge------~----------------~g~~hnitldvrgsdc~ikgiamsgfgpvtq 139 (464)
T PRK10123 92 -------GRGRFVLQDGSQ---VTGE------E----------------GGSMHNITLDVRGSDCTIKGLAMSGFGPVTQ 139 (464)
T ss_pred -------CceeEEEecCCE---eecC------C----------------CceeeeEEEeeccCceEEeeeeecccCceeE
Confidence 222333333322 2221 0 0111122221 24566677766654 22233
Q ss_pred eEEec-----eeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEec-CCccEEEcC--CceeEEEEe-----eEEc
Q 017991 205 IAFTN-----CLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT-GDDCISIVG--NSSLIRIRN-----FACG 271 (362)
Q Consensus 205 i~~~~-----~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~-gdD~i~i~s--~~~ni~i~n-----~~~~ 271 (362)
|.+.. -+|.+|+++++....++--..|+|-. -....|+||.|.. ..|+|.-.. +-++|.|++ ..|.
T Consensus 140 iyiggk~prvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnvaindr~ilisdhvie~inct 218 (464)
T PRK10123 140 IYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCT 218 (464)
T ss_pred EEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEEEecccceeeehheheeeccc
Confidence 44332 35677777777654333234455432 2466777777765 244442211 224555544 4454
Q ss_pred CC---ceeEEeecCCCC-----CcccEEeEEEEcEEEeCCc
Q 017991 272 PG---HGISIGSLGKSN-----SSVRIHDIMVYGALISNTQ 304 (362)
Q Consensus 272 ~~---~gi~igs~g~~~-----~~~~v~ni~i~n~~i~~~~ 304 (362)
++ +|+.||-.|... ....++|..+.|++=.+|.
T Consensus 219 ngkinwgigiglagstydn~ype~q~vknfvvanitgs~cr 259 (464)
T PRK10123 219 NGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCR 259 (464)
T ss_pred CCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChh
Confidence 43 578887766432 3345777777777665553
No 38
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.40 E-value=7.7e-06 Score=74.07 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=109.4
Q ss_pred EEEEeecceEEEceEEe-eCCCceeEEeceeeEEEEeEEEECCCC-CCCCCeeee-cCccCEEEEeeEEec---------
Q 017991 182 ITFHKCKNLKVQNLRVV-NSQQMHIAFTNCLRVVISNLEVIAPAE-SPNTDGIHI-SASRGVEVKNSIVGT--------- 249 (362)
Q Consensus 182 i~~~~~~nv~I~~v~i~-n~~~~~i~~~~~~nv~i~n~~I~~~~~-~~~~DGI~~-~~s~nv~I~n~~i~~--------- 249 (362)
+.+..+.|.+|.++--. ...+|++.+.+.+||.|+|++|+.... -++.|+|.+ ..++||.|++|++..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 56667888888887532 234688899999999999999997542 234699999 688999999999987
Q ss_pred CCccEEEcCCceeEEEEeeEEcCC-ceeEEeecCCCCCcccEEeEEEEcEEEeCCc-eeEEEEee---------CCCC--
Q 017991 250 GDDCISIVGNSSLIRIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISNTQ-NGVRIKTW---------QGGS-- 316 (362)
Q Consensus 250 gdD~i~i~s~~~ni~i~n~~~~~~-~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~-~gi~i~~~---------~g~~-- 316 (362)
+|..+-++.++..|+|++|+|... -++-+|+--.....+.-.+|++++|.|.+.. ++-||+-. .+.+
T Consensus 175 ~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~ 254 (345)
T COG3866 175 GDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKF 254 (345)
T ss_pred CCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCccc
Confidence 366678888899999999999764 3677776322112345578999999998853 23233211 1101
Q ss_pred ------ceEEeEEEEeEEEecCCccEE
Q 017991 317 ------GSATNIQFLDVLMKNVSNPII 337 (362)
Q Consensus 317 ------g~i~ni~~~ni~~~~~~~~i~ 337 (362)
|.-.-|..|++.+++.+.|+.
T Consensus 255 g~a~~iG~~AkiyvE~NyF~~~~~~~~ 281 (345)
T COG3866 255 GVAITIGTSAKIYVENNYFENGSEGLG 281 (345)
T ss_pred ceEEeeccceEEEEecceeccCCCCce
Confidence 222457778888887766543
No 39
>PLN02497 probable pectinesterase
Probab=98.38 E-value=0.00016 Score=68.02 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=79.3
Q ss_pred EeecceEEEceEEeeCCCc-----------eeE-EeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCc
Q 017991 185 HKCKNLKVQNLRVVNSQQM-----------HIA-FTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDD 252 (362)
Q Consensus 185 ~~~~nv~I~~v~i~n~~~~-----------~i~-~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD 252 (362)
..++++..+|++|.|...+ .+. ....+...+.+|++.+.. |-+... ...-..++|+|...=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~Q-----DTLy~~-~gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQ-----DTLWDS-DGRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccc-----cceeeC-CCcEEEEeCEEEeccc
Confidence 4578999999999997432 222 235788889999999844 334333 3467889999986544
Q ss_pred cEEEcCCceeEEEEeeEEcCC--------ceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCCC-ceEEeEE
Q 017991 253 CISIVGNSSLIRIRNFACGPG--------HGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQ 323 (362)
Q Consensus 253 ~i~i~s~~~ni~i~n~~~~~~--------~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~-g~i~ni~ 323 (362)
=| ++ .-...++||++..- .| .|-.-++ .....-....|.||++.+... ..-|++ +.-..+.
T Consensus 186 FI-FG--~g~a~Fe~C~I~s~~~~~~~~~~g-~ITA~~r-~~~~~~~GfvF~~C~itg~g~-----~yLGRPW~~ysrvv 255 (331)
T PLN02497 186 FI-FG--SGQSIYESCVIQVLGGQLEPGLAG-FITAQGR-TNPYDANGFVFKNCLVYGTGS-----AYLGRPWRGYSRVL 255 (331)
T ss_pred EE-cc--CceEEEEccEEEEecCcCCCCCce-EEEecCC-CCCCCCceEEEEccEEccCCC-----EEEeCCCCCCceEE
Confidence 22 22 34678888877521 12 1111111 122334577899999987421 122222 2346788
Q ss_pred EEeEEEecC
Q 017991 324 FLDVLMKNV 332 (362)
Q Consensus 324 ~~ni~~~~~ 332 (362)
|.|..|.+.
T Consensus 256 f~~t~m~~~ 264 (331)
T PLN02497 256 FYNSNLTDV 264 (331)
T ss_pred EEecccCCe
Confidence 888888775
No 40
>PLN02682 pectinesterase family protein
Probab=98.37 E-value=8.7e-05 Score=70.58 Aligned_cols=213 Identities=15% Similarity=0.158 Sum_probs=118.0
Q ss_pred chHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceee
Q 017991 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (362)
-|-..||+||+++.... ...+|+|.+| +|.-+ +.+ +. +.+++|+++|.= ...|...+..
T Consensus 80 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G-~Y~Ek-V~Ip~~--k~~Itl~G~g~~--------------~TiIt~~~~a- 140 (369)
T PLN02682 80 GDFTTIQAAIDSLPVINLVRVVIKVNAG-TYREK-VNIPPL--KAYITLEGAGAD--------------KTIIQWGDTA- 140 (369)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCc-eeeEE-EEEecc--CceEEEEecCCC--------------ccEEEecccc-
Confidence 45778999999654322 2357899999 99643 233 11 567777765410 0001110000
Q ss_pred EEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc---------eeEE-eceeeEEEE
Q 017991 147 LTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM---------HIAF-TNCLRVVIS 216 (362)
Q Consensus 147 i~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~---------~i~~-~~~~nv~i~ 216 (362)
+.....|..+- ..+ .+-....++++..+|++|+|.... .+.+ ...+...+.
T Consensus 141 ------~~~~~~g~~~g------------T~~-SAT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy 201 (369)
T PLN02682 141 ------DTPGPGGRPLG------------TYG-SATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFY 201 (369)
T ss_pred ------CccCCCCCccc------------ccc-ceEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEE
Confidence 00000111000 111 123345578999999999996421 2222 358889999
Q ss_pred eEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC---CceeEEeecCCCCCcccEEeE
Q 017991 217 NLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP---GHGISIGSLGKSNSSVRIHDI 293 (362)
Q Consensus 217 n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~---~~gi~igs~g~~~~~~~v~ni 293 (362)
+|++.+.. |-+.... .+-..+||+|...=|=| ++ .-...+++|++.. ..| .|-.-++ .....-...
T Consensus 202 ~C~f~G~Q-----DTLy~~~-gRqyf~~C~IeG~VDFI-FG--~g~a~Fe~C~I~s~~~~~G-~ITA~~r-~~~~~~~Gf 270 (369)
T PLN02682 202 GCKFLGAQ-----DTLYDHL-GRHYFKDCYIEGSVDFI-FG--NGLSLYEGCHLHAIARNFG-ALTAQKR-QSVLEDTGF 270 (369)
T ss_pred cceEeccc-----cceEECC-CCEEEEeeEEcccccEE-ec--CceEEEEccEEEEecCCCe-EEecCCC-CCCCCCceE
Confidence 99999844 4443333 46788999999654422 23 3477888988753 223 1211111 112234678
Q ss_pred EEEcEEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 294 MVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 294 ~i~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
.|.||++.+... +. -|++ +.-..+.|.|..|.+.=.|
T Consensus 271 vF~~C~itg~g~-~y----LGRpW~~yarvVf~~t~m~~~I~p 308 (369)
T PLN02682 271 SFVNCKVTGSGA-LY----LGRAWGTFSRVVFAYTYMDNIIIP 308 (369)
T ss_pred EEEeeEecCCCc-eE----eecCCCCcceEEEEeccCCCcCcC
Confidence 899999987521 22 2222 3456888888888776333
No 41
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.34 E-value=4.9e-05 Score=69.93 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=68.2
Q ss_pred EeecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECCCC---CCCCCeeeecCccCEEEEeeEEecCCccEEEcCCce
Q 017991 185 HKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAE---SPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSS 261 (362)
Q Consensus 185 ~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~~~---~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ 261 (362)
..++.-.|++..+.. ..+++.+..+.++.|++.+|....+ ...++||+++++++.+|..+.+.-+.|||.... ++
T Consensus 104 ~~at~A~Vr~N~l~~-n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~ 181 (408)
T COG3420 104 RTATGAVVRHNDLIG-NSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQ 181 (408)
T ss_pred cCcccceEEcccccc-cceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cc
Confidence 345556666666655 3578999999999999999997654 347889999999999999999999999998887 55
Q ss_pred eEEEEeeEEcC
Q 017991 262 LIRIRNFACGP 272 (362)
Q Consensus 262 ni~i~n~~~~~ 272 (362)
.-.|+++.+..
T Consensus 182 ~~~~~gnr~~~ 192 (408)
T COG3420 182 HNVFKGNRFRD 192 (408)
T ss_pred cceecccchhh
Confidence 55677776654
No 42
>PLN02665 pectinesterase family protein
Probab=98.32 E-value=0.00028 Score=67.19 Aligned_cols=137 Identities=17% Similarity=0.098 Sum_probs=82.3
Q ss_pred EEEEeecceEEEceEEeeCCC---------ceeE-EeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCC
Q 017991 182 ITFHKCKNLKVQNLRVVNSQQ---------MHIA-FTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGD 251 (362)
Q Consensus 182 i~~~~~~nv~I~~v~i~n~~~---------~~i~-~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gd 251 (362)
-....++++..+|++|+|... -.+. ....+...+.||++.+.. |-+.... .+-..+||+|...=
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~Q-----DTL~~~~-gr~yf~~CyIeG~V 221 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQ-----DTLCDDK-GRHFFKDCYIEGTV 221 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceecccc-----ceeEeCC-CCEEEEeeEEeecc
Confidence 344568999999999999632 1222 235788899999999843 4444333 36788999998654
Q ss_pred ccEEEcCCceeEEEEeeEEcC-Cce--eEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCCC-ceEEeEEEEeE
Q 017991 252 DCISIVGNSSLIRIRNFACGP-GHG--ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDV 327 (362)
Q Consensus 252 D~i~i~s~~~ni~i~n~~~~~-~~g--i~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni 327 (362)
|=| ++. -...+++|++.. ..+ -.|-.-++ .....-....|.||++.+....+. -|++ +.-..+.|.|.
T Consensus 222 DFI-FG~--g~a~fe~C~i~s~~~~~~g~ITA~~r-~~~~~~~GfvF~~C~itg~~~~~y----LGRpW~~ysrvVf~~t 293 (366)
T PLN02665 222 DFI-FGS--GKSLYLNTELHVVGDGGLRVITAQAR-NSEAEDSGFSFVHCKVTGTGTGAY----LGRAWMSRPRVVFAYT 293 (366)
T ss_pred cee-ccc--cceeeEccEEEEecCCCcEEEEcCCC-CCCCCCceEEEEeeEEecCCCcee----ecCCCCCcceEEEEcc
Confidence 433 233 466888888753 121 11111111 122233577899999988642222 2332 33557888888
Q ss_pred EEecC
Q 017991 328 LMKNV 332 (362)
Q Consensus 328 ~~~~~ 332 (362)
.|.+.
T Consensus 294 ~m~~~ 298 (366)
T PLN02665 294 EMSSV 298 (366)
T ss_pred ccCCe
Confidence 88765
No 43
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=98.27 E-value=0.00026 Score=70.29 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHcC--CCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceee
Q 017991 69 DDTEAFANAWKKACS--FPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~--~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (362)
-|-..||+||+++.. ....-+|+|.+| +|.-+ +.+.. .+.+++|+++|. ++
T Consensus 235 G~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~E~-V~I~~-~k~nItl~G~g~------------------------~~ 287 (529)
T PLN02170 235 GTHKTIGEALLSTSLESGGGRTVIYLKAG-TYHEN-LNIPT-KQKNVMLVGDGK------------------------GK 287 (529)
T ss_pred CchhhHHHHHHhcccccCCceEEEEEeCC-eeEEE-EecCC-CCceEEEEEcCC------------------------CC
Confidence 457889999995432 223467999999 99643 22310 145666666541 12
Q ss_pred EEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeE-EeceeeEEEEeEEEE
Q 017991 147 LTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIA-FTNCLRVVISNLEVI 221 (362)
Q Consensus 147 i~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~-~~~~~nv~i~n~~I~ 221 (362)
..|.|... .+.| |. ..+ .+-.....+++..+|++|+|..+. .+. -...+...+.+|++.
T Consensus 288 TiIt~~~~-~~~g---~~-----------T~~-SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~ 351 (529)
T PLN02170 288 TVIVGSRS-NRGG---WT-----------TYQ-TATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVE 351 (529)
T ss_pred eEEEeCCc-CCCC---Cc-----------ccc-ceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEe
Confidence 22222100 0011 00 001 123445578999999999997432 222 235788889999998
Q ss_pred CCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC----ceeEEeecCCCCCcccEEeEEEEc
Q 017991 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG----HGISIGSLGKSNSSVRIHDIMVYG 297 (362)
Q Consensus 222 ~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~----~gi~igs~g~~~~~~~v~ni~i~n 297 (362)
+.. |-+.... .+-..++|+|...=|=| ++ .-...++||.+..- ..-.|-.-++ .....-..+.|.|
T Consensus 352 GyQ-----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avFq~C~I~~~~~~~~~g~ITAq~R-~~~~~~~Gfvf~~ 421 (529)
T PLN02170 352 GYQ-----DSLYTHS-KRQFYRETDITGTVDFI-FG--NSAVVFQSCNIAARKPSGDRNYVTAQGR-SDPNQNTGISIHN 421 (529)
T ss_pred ccC-----CcceeCC-CCEEEEeeEEcccccee-cc--cceEEEeccEEEEecCCCCceEEEecCC-CCCCCCceEEEEe
Confidence 844 4444433 35677899988643422 22 34678888877421 1122222121 1223345788889
Q ss_pred EEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 298 ALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 298 ~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
|++.+.. +.+-|++ +.-..+.|.+..|.+.
T Consensus 422 C~it~~~-----~~yLGRPW~~ysrvVf~~t~l~~~ 452 (529)
T PLN02170 422 CRITAES-----MTYLGRPWKEYSRTVVMQSFIDGS 452 (529)
T ss_pred eEEecCC-----ceeeeCCCCCCceEEEEecccCCe
Confidence 9888753 2222332 2355677777777765
No 44
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.23 E-value=0.0012 Score=63.81 Aligned_cols=144 Identities=13% Similarity=0.193 Sum_probs=85.9
Q ss_pred EEEEeecceEEEceEEeeCCCc--------eeE-EeceeeEEEEeEEEECCCCCCCCC------eeeecCccCEEEEeeE
Q 017991 182 ITFHKCKNLKVQNLRVVNSQQM--------HIA-FTNCLRVVISNLEVIAPAESPNTD------GIHISASRGVEVKNSI 246 (362)
Q Consensus 182 i~~~~~~nv~I~~v~i~n~~~~--------~i~-~~~~~nv~i~n~~I~~~~~~~~~D------GI~~~~s~nv~I~n~~ 246 (362)
.....++++..+|++|+|.... .+. ....+.+.+.+|+|.+..|-...+ +........-.+++|+
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 4445789999999999997432 222 246889999999999855421111 1101122368899999
Q ss_pred EecCCccEEEcCCceeEEEEeeEEcC--C----ce-eEEeecCCCCCcccEEeEEEEcEEEeCCcee-EEE-EeeCCC--
Q 017991 247 VGTGDDCISIVGNSSLIRIRNFACGP--G----HG-ISIGSLGKSNSSVRIHDIMVYGALISNTQNG-VRI-KTWQGG-- 315 (362)
Q Consensus 247 i~~gdD~i~i~s~~~ni~i~n~~~~~--~----~g-i~igs~g~~~~~~~v~ni~i~n~~i~~~~~g-i~i-~~~~g~-- 315 (362)
|...=|=| ++. -...++||++.. . .| +.-.+ .....-....|.||+|.+...+ +.+ +.|...
T Consensus 280 IeG~VDFI-FG~--g~AvFenC~I~s~~~~~~~~g~ITA~~----t~~~~~~GfvF~nCrit~~g~~~~yLGRpW~~~s~ 352 (422)
T PRK10531 280 IEGDVDFV-FGR--GAVVFDNTEFRVVNSRTQQEAYVFAPA----TLPNIYYGFLAINSRFNASGDGVAQLGRAWDVDAG 352 (422)
T ss_pred EeecccEE-ccC--ceEEEEcCEEEEecCCCCCceEEEecC----CCCCCCCEEEEECCEEecCCCCCeeccCCCccccc
Confidence 99654422 333 477899998753 1 12 11111 1223446789999999885432 211 123221
Q ss_pred -------CceEEeEEEEeEEEecC
Q 017991 316 -------SGSATNIQFLDVLMKNV 332 (362)
Q Consensus 316 -------~g~i~ni~~~ni~~~~~ 332 (362)
......++|.+..|.+.
T Consensus 353 ~~~y~~~~~~~arvV~~~s~i~~~ 376 (422)
T PRK10531 353 LSAYVNGANTNGQVVIRDSAINEG 376 (422)
T ss_pred ccccccccCCcceEEEEeCcccce
Confidence 11235789999888775
No 45
>PLN02773 pectinesterase
Probab=98.21 E-value=0.00037 Score=65.22 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=84.7
Q ss_pred EEEeecceEEEceEEeeCCCc----eeE-EeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEc
Q 017991 183 TFHKCKNLKVQNLRVVNSQQM----HIA-FTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIV 257 (362)
Q Consensus 183 ~~~~~~nv~I~~v~i~n~~~~----~i~-~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~ 257 (362)
.+..++++.+++++|+|...- .+. ....+.+.+.+|++.+. .|-+.... .+-.++||+|...=|=| ++
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~-----QDTL~~~~-gr~yf~~c~IeG~VDFI-FG 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGW-----QDTLYLHY-GKQYLRDCYIEGSVDFI-FG 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecc-----cceeEeCC-CCEEEEeeEEeecccEE-ee
Confidence 444689999999999997422 222 23578899999999984 44454443 36889999999654433 33
Q ss_pred CCceeEEEEeeEEcCC-ce-eEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 258 GNSSLIRIRNFACGPG-HG-ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 258 s~~~ni~i~n~~~~~~-~g-i~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
. -...+++|++..- .| |.--+ . .....-....|.||++.+....-. ..-|++ +.-..+.|.|..|.+.
T Consensus 170 ~--g~a~Fe~c~i~s~~~g~ITA~~--r-~~~~~~~GfvF~~c~it~~~~~~~--~yLGRpW~~~a~vVf~~t~l~~~ 240 (317)
T PLN02773 170 N--STALLEHCHIHCKSAGFITAQS--R-KSSQESTGYVFLRCVITGNGGSGY--MYLGRPWGPFGRVVFAYTYMDAC 240 (317)
T ss_pred c--cEEEEEeeEEEEccCcEEECCC--C-CCCCCCceEEEEccEEecCCCCcc--eeecCCCCCCceEEEEecccCCe
Confidence 3 4679999988642 34 22211 0 111233578999999987532111 112322 3456788888888775
No 46
>PLN02304 probable pectinesterase
Probab=98.20 E-value=0.001 Score=63.52 Aligned_cols=205 Identities=15% Similarity=0.158 Sum_probs=113.3
Q ss_pred chHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeE
Q 017991 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~-~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni 147 (362)
-|-..||+||+++.+. ...-+|+|.+| +|.-+-..-+. +.+++|+++|.= ...|......+
T Consensus 85 Gdf~TIQ~AIdavP~~~~~r~vI~Ik~G-vY~EkV~Ip~~--K~~Itl~G~g~~--------------~TiIt~~~~a~- 146 (379)
T PLN02304 85 CNFTTVQSAVDAVGNFSQKRNVIWINSG-IYYEKVTVPKT--KPNITFQGQGFD--------------STAIAWNDTAK- 146 (379)
T ss_pred CCccCHHHHHhhCcccCCCcEEEEEeCe-EeEEEEEECCC--CCcEEEEecCCC--------------CcEEEccCccc-
Confidence 3477899999965432 22457899999 99744222112 667777776410 00011100000
Q ss_pred EEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCC---------ceeE-EeceeeEEEEe
Q 017991 148 TVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQ---------MHIA-FTNCLRVVISN 217 (362)
Q Consensus 148 ~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~---------~~i~-~~~~~nv~i~n 217 (362)
.+.| ++.+ .-.....+++..+|++|+|... -.+. ....+...+.+
T Consensus 147 --~~~g-------T~~S----------------aTv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~ 201 (379)
T PLN02304 147 --SANG-------TFYS----------------ASVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWG 201 (379)
T ss_pred --CCCC-------ccce----------------EEEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEe
Confidence 0001 1111 2233447899999999998631 1222 23588889999
Q ss_pred EEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC-----------ceeEEeecCCCCC
Q 017991 218 LEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG-----------HGISIGSLGKSNS 286 (362)
Q Consensus 218 ~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~-----------~gi~igs~g~~~~ 286 (362)
|+|.+.+ |-+.... ..-..+||+|...=|=| ++. -...++||++..- .| .|-.-++ ..
T Consensus 202 C~f~G~Q-----DTLy~~~-gR~Yf~~CyIeG~VDFI-FG~--g~A~Fe~C~I~s~~~~~~~g~~~~~G-~ITA~~R-t~ 270 (379)
T PLN02304 202 CGFFGAQ-----DTLHDDR-GRHYFKDCYIQGSIDFI-FGD--ARSLYENCRLISMANPVPPGSKSING-AVTAHGR-TS 270 (379)
T ss_pred ceEeccc-----ceeEeCC-CCEEEEeeEEcccccEE-ecc--ceEEEEccEEEEecCCcccccccCce-EEEecCC-CC
Confidence 9999844 4444333 36788999998654422 333 4668888877521 12 1111111 12
Q ss_pred cccEEeEEEEcEEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 287 SVRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 287 ~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
...-....|.||++.+.. +.+-|++ +.-..+.|.|..|.+.
T Consensus 271 ~~~~~GfvF~~C~itg~g-----~vyLGRPW~pysrvVf~~t~m~~~ 312 (379)
T PLN02304 271 KDENTGFSFVNCTIGGTG-----RIWLGRAWRPYSRVVFAYTSMTDI 312 (379)
T ss_pred CCCCceEEEECCEEccCc-----ceeecCCCCCcceEEEEecccCCE
Confidence 233457789999987642 1222332 3356788888888775
No 47
>PLN02916 pectinesterase family protein
Probab=98.14 E-value=0.00052 Score=67.87 Aligned_cols=212 Identities=12% Similarity=0.137 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHcCC----CCCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEec
Q 017991 69 DDTEAFANAWKKACSF----PARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNR 143 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~----~gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~ 143 (362)
-|-..||+||+++.+. ...-+|+|.+| +|.-+ +.+ +. +.+++|+++|.
T Consensus 197 G~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~~i~l~G~g~----------------------- 249 (502)
T PLN02916 197 GTHRTINQALAALSRMGKSRTNRVIIYVKAG-VYNEK-VEIDRH--MKNVMFVGDGM----------------------- 249 (502)
T ss_pred CCccCHHHHHHhcccccCCCCceEEEEEeCc-eeeEE-EEecCC--CceEEEEecCC-----------------------
Confidence 3577899999965431 22357999999 99743 223 11 45666666541
Q ss_pred eeeEEEEeccE-EecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEe
Q 017991 144 VNHLTVQGGGT-INGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISN 217 (362)
Q Consensus 144 ~~ni~I~G~G~-idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n 217 (362)
+...|.+... -+|. .++. .+-.....+++..+|++|.|.... .+.+ ..++...+.+
T Consensus 250 -~~TiIt~~~~~~~g~-~T~~----------------SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~ 311 (502)
T PLN02916 250 -DKTIITNNRNVPDGS-TTYS----------------SATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYR 311 (502)
T ss_pred -CCcEEEeCCccCCCC-ccee----------------eEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEe
Confidence 1122222100 0111 0111 123344578999999999986432 2222 3578888889
Q ss_pred EEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC-----ceeEEeecCCCCCcccEEe
Q 017991 218 LEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG-----HGISIGSLGKSNSSVRIHD 292 (362)
Q Consensus 218 ~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~v~n 292 (362)
|.|.+. .|-+...+ .+-..++|+|...=|=| + |.-...++||++..- ..-.|-.-++ .....-..
T Consensus 312 C~f~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avFq~C~I~~~~~~~~~~g~ITAq~r-~~~~~~tG 381 (502)
T PLN02916 312 CSFKGY-----QDTLFVHS-LRQFYRDCHIYGTIDFI-F--GDAAVVFQNCDIFVRRPMDHQGNMITAQGR-DDPHENTG 381 (502)
T ss_pred eeEecc-----CceeEeCC-CCEEEEecEEeccccee-c--cCceEEEecCEEEEecCCCCCcceEEecCC-CCCCCCcE
Confidence 998884 34444443 35677888888653422 2 234678888876421 1112222111 12233467
Q ss_pred EEEEcEEEeCCceeE----EEEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 293 IMVYGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 293 i~i~n~~i~~~~~gi----~i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
+.|.||+|.+..... ..+++-|++ +.-..+.|.+..|.+.=.|
T Consensus 382 fvf~~C~it~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t~~~~~I~p 429 (502)
T PLN02916 382 ISIQHSRVRASPEFEAVKGRFKSFLGRPWKKYSRTVFLKTDLDGLIDP 429 (502)
T ss_pred EEEEeeEEecCccccccccccceEeecCCCCCceEEEEecccCCeEcC
Confidence 888888888753211 112333433 3456778888777775333
No 48
>PLN02671 pectinesterase
Probab=98.13 E-value=0.00039 Score=65.92 Aligned_cols=133 Identities=10% Similarity=0.129 Sum_probs=81.2
Q ss_pred EEEeecceEEEceEEeeCCC--------ceeE-EeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCcc
Q 017991 183 TFHKCKNLKVQNLRVVNSQQ--------MHIA-FTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDC 253 (362)
Q Consensus 183 ~~~~~~nv~I~~v~i~n~~~--------~~i~-~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~ 253 (362)
....++++..+|++|+|... -.+. ....+.+.+.+|+|.+.. |-+.... ..-..+||+|...=|=
T Consensus 149 v~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~Q-----DTLy~~~-gR~yf~~CyIeG~VDF 222 (359)
T PLN02671 149 VTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQ-----DTLLDET-GSHYFYQCYIQGSVDF 222 (359)
T ss_pred EEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccc-----cccEeCC-CcEEEEecEEEEeccE
Confidence 34457899999999999721 1222 235788999999999844 3343333 3678899999865443
Q ss_pred EEEcCCceeEEEEeeEEcC---Cce-eEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCCC-ceEEeEEEEeEE
Q 017991 254 ISIVGNSSLIRIRNFACGP---GHG-ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDVL 328 (362)
Q Consensus 254 i~i~s~~~ni~i~n~~~~~---~~g-i~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~ 328 (362)
| ++. -...++||++.. ..| +.--+ . .....-....|.||++.+.. -+ +-|++ +.-..+.|.|..
T Consensus 223 I-FG~--g~A~Fe~C~I~s~~~~~G~ITA~~--r-~~~~~~~GfvF~~C~itg~g-~v----yLGRPW~~yarvVf~~t~ 291 (359)
T PLN02671 223 I-FGN--AKSLYQDCVIQSTAKRSGAIAAHH--R-DSPTEDTGFSFVNCVINGTG-KI----YLGRAWGNYSRTVYSNCF 291 (359)
T ss_pred E-ecc--eeEEEeccEEEEecCCCeEEEeec--c-CCCCCCccEEEEccEEccCc-cE----EEeCCCCCCceEEEEecc
Confidence 3 233 467888888753 223 22221 1 12223357899999998742 12 22222 234678888888
Q ss_pred EecC
Q 017991 329 MKNV 332 (362)
Q Consensus 329 ~~~~ 332 (362)
|.+.
T Consensus 292 m~~~ 295 (359)
T PLN02671 292 IADI 295 (359)
T ss_pred cCCe
Confidence 8775
No 49
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=98.13 E-value=0.00052 Score=69.14 Aligned_cols=215 Identities=16% Similarity=0.149 Sum_probs=113.2
Q ss_pred chHHHHHHHHHHHcCC--CCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceee
Q 017991 69 DDTEAFANAWKKACSF--PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~--~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (362)
-|-..||+||+++.+. ...-+|+|.+| +|.-. +.+.- .+.+++|.++|. +.
T Consensus 251 g~f~TIq~Av~a~p~~~~~~r~vI~vk~G-vY~E~-V~i~~-~k~~v~l~G~g~------------------------~~ 303 (553)
T PLN02708 251 CCYKTVQEAVNAAPDNNGDRKFVIRIKEG-VYEET-VRVPL-EKKNVVFLGDGM------------------------GK 303 (553)
T ss_pred CCccCHHHHHHhhhhccCCccEEEEEeCc-eEEee-eeecC-CCccEEEEecCC------------------------Cc
Confidence 3577899999966542 23458999999 99643 22200 045666666541 11
Q ss_pred EEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEEE
Q 017991 147 LTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEVI 221 (362)
Q Consensus 147 i~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I~ 221 (362)
..|.|.-.....| |. ..+ .+-.....+++..+|++|+|..+- .+.+ ..++.+.+.+|+|.
T Consensus 304 TiIt~~~~~~~~g---~~-----------T~~-saT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~ 368 (553)
T PLN02708 304 TVITGSLNVGQPG---IS-----------TYN-TATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFL 368 (553)
T ss_pred eEEEecCccCCCC---cC-----------ccc-eEEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeee
Confidence 2222210000001 00 001 122334578999999999996432 2222 35778888888888
Q ss_pred CCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC---------CceeEEeecCCCCCcccEEe
Q 017991 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP---------GHGISIGSLGKSNSSVRIHD 292 (362)
Q Consensus 222 ~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~---------~~gi~igs~g~~~~~~~v~n 292 (362)
+.. |-+...+ ..-..++|+|...=|=| ++ .-...++||.+.. +..-.|-.-++ .+...-..
T Consensus 369 G~Q-----DTLy~~~-~rq~y~~C~I~GtVDFI-FG--~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r-~~~~~~~G 438 (553)
T PLN02708 369 GNQ-----DTLYAHS-LRQFYKSCRIQGNVDFI-FG--NSAAVFQDCAILIAPRQLKPEKGENNAVTAHGR-TDPAQSTG 438 (553)
T ss_pred ecc-----ccceeCC-CceEEEeeEEeecCCEE-ec--CceEEEEccEEEEeccccCCCCCCceEEEeCCC-CCCCCCce
Confidence 843 3344433 35567888888654422 22 2467788887641 11112222111 12233457
Q ss_pred EEEEcEEEeCCceeE--------EEEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 293 IMVYGALISNTQNGV--------RIKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 293 i~i~n~~i~~~~~gi--------~i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
+.|.||+|.+...-. .-+++-|++ +.-..+.|-+..|.+.=.|
T Consensus 439 ~vf~~C~it~~~~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~I~p 490 (553)
T PLN02708 439 FVFQNCLINGTEEYMKLYRSNPKVHKNFLGRPWKEYSRTVFIGCNLEALITP 490 (553)
T ss_pred EEEEccEEecCCcccccccccccccceeeecCCCCcceEEEEecccCCeEcC
Confidence 888888887643211 012222332 3355677777777665333
No 50
>smart00656 Amb_all Amb_all domain.
Probab=98.12 E-value=0.00017 Score=62.87 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=84.9
Q ss_pred EEEEEeecceEEEceEEeeCC------CceeEEeceeeEEEEeEEEECCC----CCCCCCee-eec-CccCEEEEeeEEe
Q 017991 181 AITFHKCKNLKVQNLRVVNSQ------QMHIAFTNCLRVVISNLEVIAPA----ESPNTDGI-HIS-ASRGVEVKNSIVG 248 (362)
Q Consensus 181 ~i~~~~~~nv~I~~v~i~n~~------~~~i~~~~~~nv~i~n~~I~~~~----~~~~~DGI-~~~-~s~nv~I~n~~i~ 248 (362)
.|.+..++||.|++++|++.. ..+|.+..+++|-|++|++.... .....||. ++. .+.+++|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 367777899999999999853 35788899999999999999741 11125564 554 5789999999998
Q ss_pred cCCccEEEcCCce-------eEEEEeeEEcCCce--eEEeecCCCCCcccEEeEEEEcEEEeCCc-eeEEE
Q 017991 249 TGDDCISIVGNSS-------LIRIRNFACGPGHG--ISIGSLGKSNSSVRIHDIMVYGALISNTQ-NGVRI 309 (362)
Q Consensus 249 ~gdD~i~i~s~~~-------ni~i~n~~~~~~~g--i~igs~g~~~~~~~v~ni~i~n~~i~~~~-~gi~i 309 (362)
..+-+.-+.++.+ +|++.+|.+....+ -.+.. -.+.+-|+.+.+.. +++..
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~----------g~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRF----------GYVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccC----------CEEEEEeeEEeCcccEeEec
Confidence 7777777766422 69999998865322 11111 15788899888865 45443
No 51
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.11 E-value=0.00024 Score=63.13 Aligned_cols=123 Identities=23% Similarity=0.336 Sum_probs=84.7
Q ss_pred eEEEceEEeeCC------CceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeE
Q 017991 190 LKVQNLRVVNSQ------QMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLI 263 (362)
Q Consensus 190 v~I~~v~i~n~~------~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni 263 (362)
+.|+++++.... ..++.+..++++.|+||++.+ .+.+|+.+..+....+.+.... .++.+..+..++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 448888887643 245888889999999999998 3678888875444444333222 123333345677
Q ss_pred EEEeeEEcCC-ceeEEeecCCCCCcccEEeEEEEcEEEeC-CceeEEEEeeCCCCceEEeEEEEeEEEecCCccE
Q 017991 264 RIRNFACGPG-HGISIGSLGKSNSSVRIHDIMVYGALISN-TQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPI 336 (362)
Q Consensus 264 ~i~n~~~~~~-~gi~igs~g~~~~~~~v~ni~i~n~~i~~-~~~gi~i~~~~g~~g~i~ni~~~ni~~~~~~~~i 336 (362)
.+.|+.+..+ .|+..++ ++++++|+++.+ ...||.+... .+++++|++++++..+|
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCccCc
Confidence 7888887765 4543332 799999999998 7789988752 23899999999998876
No 52
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=98.09 E-value=0.00097 Score=67.36 Aligned_cols=212 Identities=15% Similarity=0.144 Sum_probs=117.9
Q ss_pred chHHHHHHHHHHHcCC----CCCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEec
Q 017991 69 DDTEAFANAWKKACSF----PARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNR 143 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~----~gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~ 143 (362)
-|-..||+||+++.+. .+.-+|+|.+| +|.-+ +.+ +. +.+++|+++|.
T Consensus 260 G~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G-~Y~E~-V~i~~~--k~~i~l~G~g~----------------------- 312 (566)
T PLN02713 260 GNFTTINDAVAAAPNNTDGSNGYFVIYVTAG-VYEEY-VSIPKN--KKYLMMIGDGI----------------------- 312 (566)
T ss_pred CCCCCHHHHHHhhhcccCCCCceEEEEEcCc-EEEEE-EEecCC--CceEEEEecCC-----------------------
Confidence 3477899999965442 12357999999 99643 222 11 45666665541
Q ss_pred eeeEEEEecc-EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeE-EeceeeEEEEe
Q 017991 144 VNHLTVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIA-FTNCLRVVISN 217 (362)
Q Consensus 144 ~~ni~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~-~~~~~nv~i~n 217 (362)
+...|.|.. ..||.+ ..+. +-.....+++..+|++|.|..+. .+. -..++...+.+
T Consensus 313 -~~TiIt~~~~~~~g~~----------------T~~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~ 374 (566)
T PLN02713 313 -NQTVITGNRSVVDGWT----------------TFNS-ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYS 374 (566)
T ss_pred -CCcEEEcCCcccCCCc----------------cccc-eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEe
Confidence 112222211 011111 0111 22334579999999999996432 222 23578888999
Q ss_pred EEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC---ce--eEEeecCCCCCcccEEe
Q 017991 218 LEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG---HG--ISIGSLGKSNSSVRIHD 292 (362)
Q Consensus 218 ~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~v~n 292 (362)
|+|.+. .|-+.... ..-..++|+|...=|=| + |.-...++||.+... .+ -.|-.-++ .+...-..
T Consensus 375 C~~~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G 444 (566)
T PLN02713 375 CSFEAY-----QDTLYTHS-LRQFYRECDIYGTVDFI-F--GNAAVVFQNCNLYPRLPMQGQFNTITAQGR-TDPNQNTG 444 (566)
T ss_pred eeeccC-----CcceEECC-CCEEEEeeEEeccccee-c--ccceEEEeccEEEEecCCCCCcceeeecCC-CCCCCCCE
Confidence 999984 34454444 35788999998653422 2 235778888887421 11 11222111 12223467
Q ss_pred EEEEcEEEeCCceeE----EEEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 293 IMVYGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 293 i~i~n~~i~~~~~gi----~i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
+.|.||+|....... ..+++-|++ +.-..+.|.+..|.+.=.|
T Consensus 445 ~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~~I~p 492 (566)
T PLN02713 445 TSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDGLIDP 492 (566)
T ss_pred EEEEcCEEecCCcccccccccceeeecCCCCcceEEEEecccCCeecc
Confidence 899999998753210 122333333 3456778888888775333
No 53
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.08 E-value=4.6e-05 Score=67.07 Aligned_cols=94 Identities=23% Similarity=0.255 Sum_probs=63.0
Q ss_pred ceeeEEEEeEEEECC-----------CCCCCCCeeeecCccCEEEEeeEEecC---------CccEEEcCCceeEEEEee
Q 017991 209 NCLRVVISNLEVIAP-----------AESPNTDGIHISASRGVEVKNSIVGTG---------DDCISIVGNSSLIRIRNF 268 (362)
Q Consensus 209 ~~~nv~i~n~~I~~~-----------~~~~~~DGI~~~~s~nv~I~n~~i~~g---------dD~i~i~s~~~ni~i~n~ 268 (362)
.++||.|+|++|+.. ......|+|.+..+++|.|++|.+..+ |..+.++.++.+|+|++|
T Consensus 44 ~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n 123 (200)
T PF00544_consen 44 GASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNN 123 (200)
T ss_dssp SCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-
T ss_pred CCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEch
Confidence 566666666666651 123478999999999999999999876 555788888999999999
Q ss_pred EEcCCc-eeEEeecCCCCCcccEEeEEEEcEEEeCC
Q 017991 269 ACGPGH-GISIGSLGKSNSSVRIHDIMVYGALISNT 303 (362)
Q Consensus 269 ~~~~~~-gi~igs~g~~~~~~~v~ni~i~n~~i~~~ 303 (362)
.|...+ +.-+|+......... .++++.+|.+.++
T Consensus 124 ~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 124 IFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred hccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 997642 455666211112234 8999999999875
No 54
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=98.08 E-value=0.00047 Score=69.06 Aligned_cols=206 Identities=14% Similarity=0.142 Sum_probs=109.2
Q ss_pred chHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeE
Q 017991 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~-~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni 147 (362)
-|-..||+||+++... .+.-+|+|.+| +|.-+-..-+. +.+++|.++|. +..
T Consensus 242 G~f~TIq~Av~a~p~~~~~r~vI~Vk~G-vY~E~V~I~~~--k~~i~l~G~g~------------------------~~t 294 (537)
T PLN02506 242 GHYRTITEAINEAPNHSNRRYIIYVKKG-VYKENIDMKKK--KTNIMLVGDGI------------------------GQT 294 (537)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCC-eeeEEEeccCC--CceEEEEEcCC------------------------CCe
Confidence 3577899999965442 23458999999 99654222111 45666665541 112
Q ss_pred EEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeE-EeceeeEEEEeEEEEC
Q 017991 148 TVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIA-FTNCLRVVISNLEVIA 222 (362)
Q Consensus 148 ~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~-~~~~~nv~i~n~~I~~ 222 (362)
.|.+.... ..| |. ..+ .+-....++++..+|++|+|..+. .+. -...+.+.+.+|+|.+
T Consensus 295 iIt~~~~~-~~g---~~-----------T~~-saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G 358 (537)
T PLN02506 295 VVTGNRNF-MQG---WT-----------TFR-TATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEG 358 (537)
T ss_pred EEEeCccc-cCC---CC-----------ccc-ceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeec
Confidence 22221100 001 00 011 123345688999999999997432 122 2357788888888887
Q ss_pred CCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC-----ceeEEeecCCCCCcccEEeEEEEc
Q 017991 223 PAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG-----HGISIGSLGKSNSSVRIHDIMVYG 297 (362)
Q Consensus 223 ~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~v~ni~i~n 297 (362)
.. |-+.... ..-..++|+|...=|=| ++ .-...++||++..- ..-.|-.-|+ .....-..+.|.|
T Consensus 359 ~Q-----DTLy~~~-~rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~r~~~~~~~~~iTA~~r-~~~~~~~G~vf~~ 428 (537)
T PLN02506 359 YQ-----DTLYAHS-LRQFYRECEIYGTIDFI-FG--NGAAVLQNCKIYTRVPLPLQKVTITAQGR-KSPHQSTGFSIQD 428 (537)
T ss_pred cc-----ccceecC-CceEEEeeEEecccceE-cc--CceeEEeccEEEEccCCCCCCceEEccCC-CCCCCCcEEEEEc
Confidence 43 3333333 35677888888543322 22 24567778876421 1112222121 1122335678888
Q ss_pred EEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 298 ALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 298 ~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
|++.+.. . ++-|++ +.-..+.|.|..|.+.
T Consensus 429 c~i~~~~-~----~yLGRPW~~~sr~v~~~t~l~~~ 459 (537)
T PLN02506 429 SYVLATQ-P----TYLGRPWKQYSRTVFMNTYMSQL 459 (537)
T ss_pred CEEccCC-c----eEEecCCCCCceEEEEecCCCCe
Confidence 8877642 1 222322 3355677777777664
No 55
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=98.03 E-value=0.0008 Score=67.54 Aligned_cols=214 Identities=14% Similarity=0.145 Sum_probs=120.9
Q ss_pred chHHHHHHHHHHHcC---CCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEecee
Q 017991 69 DDTEAFANAWKKACS---FPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVN 145 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~---~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ 145 (362)
-|-..||+||+++.. ....-+|+|.+| +|.-+-..-+. +.+++|+++|. +
T Consensus 233 G~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E~V~i~~~--k~~i~l~G~g~------------------------~ 285 (539)
T PLN02995 233 GHFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQENINVRLN--NDDIMLVGDGM------------------------R 285 (539)
T ss_pred CCccCHHHHHHhcccccCCCceEEEEEeCC-EeEEEEEecCC--CCcEEEEEcCC------------------------C
Confidence 357789999996542 223467999999 99764221111 56777776651 1
Q ss_pred eEEEEeccEE-ecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEE
Q 017991 146 HLTVQGGGTI-NGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLE 219 (362)
Q Consensus 146 ni~I~G~G~i-dG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~ 219 (362)
...|.|.-.. ++.+ ++ + .+-......++..+|++|.|..+. .+.+ ..++...+.+|+
T Consensus 286 ~TvIt~~~~~~~~~~-T~---------------~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~ 348 (539)
T PLN02995 286 STIITGGRSVKGGYT-TY---------------N-SATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCS 348 (539)
T ss_pred CeEEEeCCccCCCCc-cc---------------c-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcce
Confidence 1222221000 0000 11 1 122334578999999999986432 2322 357888999999
Q ss_pred EECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC---ce--eEEeecCCCCCcccEEeEE
Q 017991 220 VIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG---HG--ISIGSLGKSNSSVRIHDIM 294 (362)
Q Consensus 220 I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~---~g--i~igs~g~~~~~~~v~ni~ 294 (362)
|.+..| -+.... ..-..++|+|...=|=| ++ .....++||++..- .| -.|-.-++ .....-..+.
T Consensus 349 ~~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~v 418 (539)
T PLN02995 349 IEGYQD-----TLMVHS-QRQFYRECYIYGTVDFI-FG--NAAAVFQNCIILPRRPLKGQANVITAQGR-ADPFQNTGIS 418 (539)
T ss_pred Eecccc-----hhccCC-CceEEEeeEEeeccceE-ec--ccceEEeccEEEEecCCCCCcceEecCCC-CCCCCCceEE
Confidence 998543 343333 35688999998654422 22 34678888877521 11 12222121 1223346889
Q ss_pred EEcEEEeCCceeE----EEEeeCCCC-ceEEeEEEEeEEEecCCccE
Q 017991 295 VYGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNVSNPI 336 (362)
Q Consensus 295 i~n~~i~~~~~gi----~i~~~~g~~-g~i~ni~~~ni~~~~~~~~i 336 (362)
|.||+|.+..... ..+++-|++ +.-..+.|.+..|.+.=.|.
T Consensus 419 f~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~I~p~ 465 (539)
T PLN02995 419 IHNSRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNVVSPV 465 (539)
T ss_pred EEeeEEecCCcccccccccceeccCCCCCCcceEEEeccccCccccc
Confidence 9999998853211 123334443 34556888888887764554
No 56
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.98 E-value=0.0016 Score=66.08 Aligned_cols=211 Identities=11% Similarity=0.148 Sum_probs=119.1
Q ss_pred chHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceee
Q 017991 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~-~gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (362)
-|-..||+||+++.+. ...-+|+|.+| +|.-+ +.+ +. +.+++|+++|. +.
T Consensus 295 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~~i~l~G~g~------------------------~~ 346 (596)
T PLN02745 295 GNFTTISDALAAMPAKYEGRYVIYVKQG-IYDET-VTVDKK--MVNVTMYGDGS------------------------QK 346 (596)
T ss_pred CCcccHHHHHHhccccCCceEEEEEeCC-eeEEE-EEEcCC--CceEEEEecCC------------------------Cc
Confidence 3577899999955432 12357999999 99754 222 11 45666666541 11
Q ss_pred EEEEeccE-EecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEE
Q 017991 147 LTVQGGGT-INGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEV 220 (362)
Q Consensus 147 i~I~G~G~-idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I 220 (362)
..|.|... -+|.+ ++. .+-.....+++..+|++|.|..+- .+.+ ..++...+.+|+|
T Consensus 347 TiIt~~~~~~~g~~-T~~----------------saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~ 409 (596)
T PLN02745 347 TIVTGNKNFADGVR-TFR----------------TATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRF 409 (596)
T ss_pred eEEEECCcccCCCc-cee----------------eEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEE
Confidence 12222100 01100 111 123334688999999999996431 2222 4588899999999
Q ss_pred ECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC------ceeEEeecCCCCCcccEEeEE
Q 017991 221 IAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG------HGISIGSLGKSNSSVRIHDIM 294 (362)
Q Consensus 221 ~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~------~gi~igs~g~~~~~~~v~ni~ 294 (362)
.+..+ -+.... .+-..++|+|...=| +-++ .-...++||++..- .| .|-.-++ .+...-..+.
T Consensus 410 ~G~QD-----TLy~~~-~Rqyy~~C~I~GtVD-FIFG--~a~avf~~C~i~~~~~~~~~~~-~iTAq~r-~~~~~~~Gfv 478 (596)
T PLN02745 410 EGYQD-----TLYAQT-HRQFYRSCVITGTID-FIFG--DAAAIFQNCLIFVRKPLPNQQN-TVTAQGR-VDKFETTGIV 478 (596)
T ss_pred eeccc-----ccccCC-CcEEEEeeEEEeecc-EEec--ceeEEEEecEEEEecCCCCCCc-eEEecCC-CCCCCCceEE
Confidence 98543 343333 467889999986544 2233 35778888877521 12 2222111 1223346889
Q ss_pred EEcEEEeCCceeE----EEEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 295 VYGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 295 i~n~~i~~~~~gi----~i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
|.||+|.+..... ..+++-|++ +.-..+.|.+..|.+.=.|
T Consensus 479 f~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~~I~p 524 (596)
T PLN02745 479 LQNCRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIEDVIDP 524 (596)
T ss_pred EEeeEEecCccccccccccceeccCCCCCCccEEEEecccCCeEcc
Confidence 9999998753211 123334443 3456778888777765333
No 57
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.97 E-value=0.003 Score=62.42 Aligned_cols=209 Identities=15% Similarity=0.133 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceee
Q 017991 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~-~gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (362)
-|-..||+||+++.+. ...-+|+|.+| +|.-+ +.+ +. +.+++|.++|. +.
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~nItliGdg~------------------------~~ 258 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDEI-VRIGST--KPNLTLIGDGQ------------------------DS 258 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCC-eeEEE-EEecCC--CccEEEEecCC------------------------Cc
Confidence 4577899999965442 22457999999 99753 222 11 55777766541 11
Q ss_pred EEEEecc-EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEE
Q 017991 147 LTVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEV 220 (362)
Q Consensus 147 i~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I 220 (362)
..|.|.- ..+|. .++.. +-......++..+|++|+|..+- .+.+ ..++...+.+|.|
T Consensus 259 TiIt~n~~~~~g~-~T~~S----------------ATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f 321 (509)
T PLN02488 259 TIITGNLSASNGK-RTFYT----------------ATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRI 321 (509)
T ss_pred eEEEEcccccCCC-Cceee----------------EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEccee
Confidence 1222210 00111 01111 22334578899999999986432 2222 3578888888988
Q ss_pred ECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC-----CceeEEeecCCCCCcccEEeEEE
Q 017991 221 IAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP-----GHGISIGSLGKSNSSVRIHDIMV 295 (362)
Q Consensus 221 ~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~-----~~gi~igs~g~~~~~~~v~ni~i 295 (362)
.+.. |-+...+ .+-..++|+|...=|=| + |.-...++||.+.. +..-.|-.-++ .....-..+.|
T Consensus 322 ~GyQ-----DTLy~~~-~RqyyrdC~I~GtVDFI-F--G~a~avFq~C~I~sr~~~~~~~~~ITAq~R-~~~~~~tGfvf 391 (509)
T PLN02488 322 EGYQ-----DALYPHR-DRQFYRECFITGTVDFI-C--GNAAAVFQFCQIVARQPMMGQSNVITAQSR-ESKDDNSGFSI 391 (509)
T ss_pred eccC-----cceeeCC-CCEEEEeeEEeeccceE-e--cceEEEEEccEEEEecCCCCCCEEEEeCCC-CCCCCCcEEEE
Confidence 8843 4444333 46788888888654422 2 23577888887752 11122322221 11223457888
Q ss_pred EcEEEeCCceeE----EEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 296 YGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 296 ~n~~i~~~~~gi----~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
.||++....... ..+++-|++ ..-+.+.|.+..|.+.
T Consensus 392 ~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~~ 433 (509)
T PLN02488 392 QKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGDL 433 (509)
T ss_pred EeeEEecCCcccccccccceeecCCCCCCccEEEEeccCCCe
Confidence 888888754211 123333443 3455667777777664
No 58
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.96 E-value=0.0011 Score=66.92 Aligned_cols=212 Identities=17% Similarity=0.169 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceee
Q 017991 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~-~gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (362)
-+-..||+||+++.+. ...-+|+|.+| +|.-. +.+ +. +.+++|+++|. +.
T Consensus 268 g~f~tI~~Av~a~p~~~~~~~vI~ik~G-vY~E~-V~i~~~--k~~i~~~G~g~------------------------~~ 319 (565)
T PLN02468 268 GKYKTISEALKDVPEKSEKRTIIYVKKG-VYFEN-VRVEKK--KWNVVMVGDGM------------------------SK 319 (565)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCC-ceEEE-EEecCC--CCeEEEEecCC------------------------CC
Confidence 3467899999965442 23458999999 99643 333 11 44666666541 11
Q ss_pred EEEEecc-EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeE-EeceeeEEEEeEEE
Q 017991 147 LTVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIA-FTNCLRVVISNLEV 220 (362)
Q Consensus 147 i~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~-~~~~~nv~i~n~~I 220 (362)
..|.|.. ..||.. +|- .+-.....+++..++++|+|..+. .+. -..++...+.+|+|
T Consensus 320 tiIt~~~~~~dg~~-t~~----------------saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~ 382 (565)
T PLN02468 320 TIVSGSLNFVDGTP-TFS----------------TATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTM 382 (565)
T ss_pred CEEEeCCccCCCCC-ccc----------------eeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEE
Confidence 1222210 011111 111 122333578999999999986432 222 24678889999999
Q ss_pred ECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC-----CceeEEeecCCCCCcccEEeEEE
Q 017991 221 IAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP-----GHGISIGSLGKSNSSVRIHDIMV 295 (362)
Q Consensus 221 ~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~-----~~gi~igs~g~~~~~~~v~ni~i 295 (362)
.+.. |-+.... ..-..++|+|...=|=| ++ .-...++||.+.. +..-.|-.-|+ .+...-..+.|
T Consensus 383 ~G~Q-----DTLy~~~-~rq~y~~C~I~GtvDFI-FG--~a~avfq~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf 452 (565)
T PLN02468 383 DAFQ-----DTLYAHA-QRQFYRECNIYGTVDFI-FG--NSAVVFQNCNILPRRPMKGQQNTITAQGR-TDPNQNTGISI 452 (565)
T ss_pred Eecc-----chhccCC-CceEEEeeEEeccccee-ec--cceEEEeccEEEEecCCCCCCceEEecCC-CCCCCCceEEE
Confidence 9854 3344333 35678899998653422 22 3577888887742 11112222221 12234467899
Q ss_pred EcEEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 296 YGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 296 ~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
.||+|......-..+++-|++ +.-..+.|.+..|.+.=.|
T Consensus 453 ~~c~i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~~I~p 493 (565)
T PLN02468 453 QNCTILPLGDLTSVKTFLGRPWKNYSTTVIMHSMMGSLIDP 493 (565)
T ss_pred EccEEecCCCccccceeeecCCCCCceEEEEecccCCeEcc
Confidence 999998753221223333433 3345677888777775333
No 59
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.95 E-value=0.0012 Score=66.87 Aligned_cols=214 Identities=14% Similarity=0.162 Sum_probs=118.3
Q ss_pred chHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeE
Q 017991 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni 147 (362)
-|-..||+||+++.... ..-+|+|.+| +|.-+.+.+.- .+.+++|.++|. +..
T Consensus 282 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~-~k~ni~l~G~g~------------------------~~T 335 (587)
T PLN02484 282 GTFKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGR-KKTNLMFIGDGK------------------------GKT 335 (587)
T ss_pred CCcccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECC-CCceEEEEecCC------------------------CCe
Confidence 34778999999654322 2467899999 99764344410 145666666541 112
Q ss_pred EEEeccE-EecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEEE
Q 017991 148 TVQGGGT-INGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEVI 221 (362)
Q Consensus 148 ~I~G~G~-idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I~ 221 (362)
.|+|.-. .++.+ ++. .+-.....+++..+|++|.|...- .+.+ ...+...+.+|.|.
T Consensus 336 iIt~~~~~~~~~~-t~~----------------saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~ 398 (587)
T PLN02484 336 VITGGKSIFDNLT-TFH----------------TASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNII 398 (587)
T ss_pred EEecCCcccCCCc-ccc----------------eEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEe
Confidence 2222100 01110 111 123344578899999999986431 2222 35788889999999
Q ss_pred CCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC---C--ceeEEeecCCCCCcccEEeEEEE
Q 017991 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP---G--HGISIGSLGKSNSSVRIHDIMVY 296 (362)
Q Consensus 222 ~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~---~--~gi~igs~g~~~~~~~v~ni~i~ 296 (362)
+.. |-+.... ..-..++|+|...=|=| + |.-...++||++.. . ..-.|-.-++ .+...-..+.|.
T Consensus 399 G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~~~~~~~~~~~ITAq~r-~~~~~~~G~vf~ 468 (587)
T PLN02484 399 GYQ-----DTLYVHS-NRQFFRECDIYGTVDFI-F--GNAAVVLQNCSIYARKPMAQQKNTITAQNR-KDPNQNTGISIH 468 (587)
T ss_pred ccC-----cccccCC-CcEEEEecEEEecccee-c--ccceeEEeccEEEEecCCCCCceEEEecCC-CCCCCCcEEEEE
Confidence 844 3343333 35688899988643322 2 23467888887752 1 1122222111 122334688899
Q ss_pred cEEEeCCcee----EEEEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 297 GALISNTQNG----VRIKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 297 n~~i~~~~~g----i~i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
||++.+...- -..+++-|++ +.-..+.|.+..|.+.=.|
T Consensus 469 ~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~I~p 512 (587)
T PLN02484 469 ACRILAASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDHIHP 512 (587)
T ss_pred eeEEecCCccccccCccceeccCCCCCCceEEEEecccCCeEcc
Confidence 9999875321 0122333443 3456788888888775333
No 60
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.94 E-value=0.0022 Score=64.03 Aligned_cols=212 Identities=14% Similarity=0.150 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceee
Q 017991 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~-~gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (362)
-|-..||+||+++... ...-+|+|.+| +|.-+ +.+ +. +.+++|+++|. +.
T Consensus 216 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~--k~~i~l~G~g~------------------------~~ 267 (520)
T PLN02201 216 GNFTTIMDAVLAAPDYSTKRYVIYIKKG-VYLEN-VEIKKK--KWNIMMVGDGI------------------------DA 267 (520)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCc-eeEEE-EEecCC--CceEEEEecCC------------------------CC
Confidence 4578899999965432 22468999999 99643 222 11 45666666541 11
Q ss_pred EEEEeccE-EecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEE
Q 017991 147 LTVQGGGT-INGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEV 220 (362)
Q Consensus 147 i~I~G~G~-idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I 220 (362)
..|++... .||.+ + .+ .+-.....+++..+|++|.|..+- .+.+ ...+...+.+|.|
T Consensus 268 TiIt~~~~~~~g~~-T---------------~~-SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f 330 (520)
T PLN02201 268 TVITGNRSFIDGWT-T---------------FR-SATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAM 330 (520)
T ss_pred cEEEeCCccCCCCc-c---------------cc-eEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeee
Confidence 12222110 11110 0 01 123344578999999999997431 2222 3578888999999
Q ss_pred ECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC-----CceeEEeecCCCCCcccEEeEEE
Q 017991 221 IAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP-----GHGISIGSLGKSNSSVRIHDIMV 295 (362)
Q Consensus 221 ~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~-----~~gi~igs~g~~~~~~~v~ni~i 295 (362)
.+. .|-+.... .+-..++|+|...=|=| ++ .-...++||++.. +..-.|-.-++ .+...-....|
T Consensus 331 ~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~Gfvf 400 (520)
T PLN02201 331 RGY-----QDTLYTHT-MRQFYRECRITGTVDFI-FG--DATAVFQNCQILAKKGLPNQKNTITAQGR-KDPNQPTGFSI 400 (520)
T ss_pred ecc-----CCeeEeCC-CCEEEEeeEEeecccEE-ec--CceEEEEccEEEEecCCCCCCceEEecCC-CCCCCCcEEEE
Confidence 884 44454444 35677889998654422 22 3467888887752 11112222111 12234457889
Q ss_pred EcEEEeCCceeEE----EEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 296 YGALISNTQNGVR----IKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 296 ~n~~i~~~~~gi~----i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
.||++.+...... .+++-|++ +.-..+.|.+..|.+.=.|
T Consensus 401 ~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~l~~~I~p 445 (520)
T PLN02201 401 QFSNISADTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSDAIRP 445 (520)
T ss_pred EeeEEecCccccccccccceEeecCCCCCceEEEEecCcCCeEcc
Confidence 9999877432111 12233433 4466788888888775333
No 61
>PLN02314 pectinesterase
Probab=97.94 E-value=0.0015 Score=66.43 Aligned_cols=210 Identities=15% Similarity=0.151 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeE
Q 017991 70 DTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (362)
Q Consensus 70 dt~aiq~Ai~~a~~~-~gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni 147 (362)
|-..||+||+++... ...-+|+|.+| +|.=. +.+ +. +.+++|+++|. +..
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~E~-V~i~~~--k~~i~l~G~g~------------------------~~t 340 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEG-TYVEN-VLLDKS--KWNVMIYGDGK------------------------DKT 340 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCc-eEEEE-EEecCC--CceEEEEecCC------------------------CCc
Confidence 567899999965432 12357999999 99643 222 11 45666666541 111
Q ss_pred EEEecc-EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeE-EeceeeEEEEeEEEE
Q 017991 148 TVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIA-FTNCLRVVISNLEVI 221 (362)
Q Consensus 148 ~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~-~~~~~nv~i~n~~I~ 221 (362)
.|.|.. ..||.. ++.. +-.....+++..+|++|.|..+. .+. -...+...+.+|+|.
T Consensus 341 iIt~~~~~~~g~~-t~~s----------------aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~ 403 (586)
T PLN02314 341 IISGSLNFVDGTP-TFST----------------ATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFD 403 (586)
T ss_pred EEEecCCcCCCCC-ccce----------------EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEE
Confidence 222210 011111 1111 23334678999999999996432 222 235777888889888
Q ss_pred CCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC-----ceeEEeecCCCCCcccEEeEEEE
Q 017991 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG-----HGISIGSLGKSNSSVRIHDIMVY 296 (362)
Q Consensus 222 ~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~v~ni~i~ 296 (362)
+.. |-+...+ ..-..++|+|...=|=| ++ .-...++||.+..- ..-.|-.-++ .+...-..+.|.
T Consensus 404 G~Q-----DTLy~~~-~rq~y~~C~I~GtvDFI-FG--~a~avf~~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~ 473 (586)
T PLN02314 404 AFQ-----DTLYAHS-NRQFYRDCDITGTIDFI-FG--NAAVVFQNCNIQPRQPLPNQFNTITAQGK-KDPNQNTGISIQ 473 (586)
T ss_pred ecc-----chheeCC-CCEEEEeeEEEecccee-cc--CceeeeeccEEEEecCCCCCCceEecCCC-CCCCCCCEEEEE
Confidence 844 3344333 35678888888653422 22 34678888877421 1112222121 122344678888
Q ss_pred cEEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 297 GALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 297 n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
||+|.+... +..+++-|++ ..-..+.|.+..|.+.=.|
T Consensus 474 ~c~i~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~I~p 512 (586)
T PLN02314 474 RCTISAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSFLNP 512 (586)
T ss_pred eeEEecCCc-ccccccccCCCCCCceEEEEecccCCcccc
Confidence 888887532 2223333433 3345677777777776333
No 62
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.93 E-value=0.0023 Score=64.25 Aligned_cols=212 Identities=16% Similarity=0.166 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceee
Q 017991 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (362)
-|-..||+||+++.+.. ..-+|+|.+| +|.-+ +.+ +. +.+++|+++|. +.
T Consensus 246 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~-V~i~~~--k~~i~l~G~g~------------------------~~ 297 (548)
T PLN02301 246 GKYKTVKEAVASAPDNSKTRYVIYVKKG-TYKEN-VEIGKK--KKNLMLVGDGM------------------------DS 297 (548)
T ss_pred CCcccHHHHHHhhhhcCCceEEEEEeCc-eeeEE-EEecCC--CceEEEEecCC------------------------CC
Confidence 35788999999654432 2357999999 99643 222 11 45666666541 11
Q ss_pred EEEEecc-EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEE
Q 017991 147 LTVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEV 220 (362)
Q Consensus 147 i~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I 220 (362)
..|.|.. ..||.+ ++- .+-.....+++..+|++|.|..+. .+.+ ..++...+.+|+|
T Consensus 298 TiIt~~~~~~dg~~-T~~----------------SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~ 360 (548)
T PLN02301 298 TIITGSLNVIDGST-TFR----------------SATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRI 360 (548)
T ss_pred cEEEeCCccCCCCC-cee----------------eEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeee
Confidence 1222210 011111 111 123344578999999999996432 2222 3578888999999
Q ss_pred ECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC-----ceeEEeecCCCCCcccEEeEEE
Q 017991 221 IAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG-----HGISIGSLGKSNSSVRIHDIMV 295 (362)
Q Consensus 221 ~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~v~ni~i 295 (362)
.+.. |-+.... ..-..++|+|...=|=| + |.-...++||++..- ..-.|-.-|+ .+...-..+.|
T Consensus 361 ~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avfq~c~i~~~~~~~~~~~~iTAqgr-~~~~~~tG~vf 430 (548)
T PLN02301 361 DAYQ-----DTLYAHS-LRQFYRDSYITGTVDFI-F--GNAAVVFQNCKIVARKPMAGQKNMVTAQGR-TDPNQNTGISI 430 (548)
T ss_pred eecc-----ccceecC-CcEEEEeeEEEecccee-c--ccceeEEeccEEEEecCCCCCCceEEecCC-CCCCCCCEEEE
Confidence 8844 3344433 35688899988654422 2 234678888877421 1112222121 12233467888
Q ss_pred EcEEEeCCceeE----EEEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 296 YGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 296 ~n~~i~~~~~gi----~i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
.||+|.+...-. ..++.-|++ ..-..+.|.+..|.+.=.|
T Consensus 431 ~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~I~p 475 (548)
T PLN02301 431 QKCDIIASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDDHIDP 475 (548)
T ss_pred EeeEEecCccccccccccceeeecCCCCCceEEEEecccCCeecc
Confidence 999888753211 112233333 3456677777777765333
No 63
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.92 E-value=0.0025 Score=63.58 Aligned_cols=213 Identities=14% Similarity=0.165 Sum_probs=118.2
Q ss_pred chHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeE
Q 017991 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni 147 (362)
-|-..||+||+++.... ..-+|+|.+| +|.= .+.+.- .+.+++|+++|. +..
T Consensus 228 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~-~k~~itl~G~g~------------------------~~T 280 (530)
T PLN02933 228 GNFTTINEAVSAAPNSSETRFIIYIKGG-EYFE-NVELPK-KKTMIMFIGDGI------------------------GKT 280 (530)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEcCc-eEEE-EEEecC-CCceEEEEEcCC------------------------CCc
Confidence 35778999999654422 2457999999 9974 333310 045666666541 111
Q ss_pred EEEecc-EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEEE
Q 017991 148 TVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEVI 221 (362)
Q Consensus 148 ~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I~ 221 (362)
.|.+.. ..||.+ ..+ .+-.....+++..+|++|.|..+. .+.+ ..++...+.+|.|.
T Consensus 281 iIt~~~~~~dg~~----------------T~~-SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~ 343 (530)
T PLN02933 281 VIKANRSRIDGWS----------------TFQ-TATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFD 343 (530)
T ss_pred EEEeCCccCCCCc----------------ccc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEE
Confidence 122210 011110 011 123344578999999999996432 2333 35788899999999
Q ss_pred CCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC---C--ceeEEeecCCCCCcccEEeEEEE
Q 017991 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP---G--HGISIGSLGKSNSSVRIHDIMVY 296 (362)
Q Consensus 222 ~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~---~--~gi~igs~g~~~~~~~v~ni~i~ 296 (362)
+.. |-+.... ..-..++|+|...=|=| ++ .-...++||++.. . ..-.|-.-++ .....-..+.|.
T Consensus 344 G~Q-----DTLy~~~-~Rqyy~~C~IeGtVDFI-FG--~a~avFq~C~i~~~~~~~~~~~~iTAq~r-~~~~~~tGfvf~ 413 (530)
T PLN02933 344 GYQ-----DTLYVHS-AKQFYRECDIYGTIDFI-FG--NAAVVFQNCSLYARKPNPNHKIAFTAQSR-NQSDQPTGISII 413 (530)
T ss_pred ecc-----cccccCC-CceEEEeeEEeccccee-cc--CceEEEeccEEEEeccCCCCceEEEecCC-CCCCCCceEEEE
Confidence 844 3344333 35688999998653322 22 3457888887742 1 1122222121 122334578999
Q ss_pred cEEEeCCceeEE----EEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 297 GALISNTQNGVR----IKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 297 n~~i~~~~~gi~----i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
||++.+....+. .+++-|++ +.-..+.|.+..|.+.=.|
T Consensus 414 ~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~s~l~~~I~p 457 (530)
T PLN02933 414 SSRILAAPDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDLIHP 457 (530)
T ss_pred eeEEecCCcccccccccceEeccCCCCCceEEEEecccCCeecc
Confidence 999987432111 12333433 3456788888888775333
No 64
>PLN02432 putative pectinesterase
Probab=97.92 E-value=0.0033 Score=58.32 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=82.2
Q ss_pred EEeecceEEEceEEeeCCCc---eeE-EeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCC
Q 017991 184 FHKCKNLKVQNLRVVNSQQM---HIA-FTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGN 259 (362)
Q Consensus 184 ~~~~~nv~I~~v~i~n~~~~---~i~-~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~ 259 (362)
...++++.++|++|+|...- .+. -...+...+.+|+|.+. .|-+.... ..-..+||+|...=|=| ++.
T Consensus 90 ~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~-----QDTLy~~~-gr~yf~~c~I~G~VDFI-FG~- 161 (293)
T PLN02432 90 SVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSY-----QDTLLDDT-GRHYYRNCYIEGATDFI-CGN- 161 (293)
T ss_pred EEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecc-----cceeEECC-CCEEEEeCEEEecccEE-ecC-
Confidence 34578999999999996321 222 23578899999999984 34444433 46789999999654433 333
Q ss_pred ceeEEEEeeEEcC---Cce-eEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 260 SSLIRIRNFACGP---GHG-ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 260 ~~ni~i~n~~~~~---~~g-i~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
-...+++|++.. .+| +.--+ + .....-....|.||++.+.. +..-|++ +.-..+.|.|..|.+.
T Consensus 162 -g~a~Fe~c~i~s~~~~~g~itA~~--r-~~~~~~~Gfvf~~c~itg~g-----~~yLGRpW~~~srvvf~~t~l~~~ 230 (293)
T PLN02432 162 -AASLFEKCHLHSLSPNNGAITAQQ--R-TSASENTGFTFLGCKLTGAG-----TTYLGRPWGPYSRVVFALSYMSSV 230 (293)
T ss_pred -ceEEEEeeEEEEecCCCCeEEecC--C-CCCCCCceEEEEeeEEcccc-----hhhccCCCCCccEEEEEecccCCe
Confidence 467899998852 234 22211 1 11223357899999998642 1222332 3456788888888764
No 65
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.89 E-value=0.0019 Score=65.54 Aligned_cols=210 Identities=13% Similarity=0.141 Sum_probs=110.4
Q ss_pred chHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeE
Q 017991 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~-~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni 147 (362)
-|-..||+||+++... ...-+|+|.+| +|.-.-..-+. +.+++|.++|. +..
T Consensus 285 G~f~TI~~Av~a~p~~~~~r~vI~ik~G-vY~E~V~i~~~--k~ni~l~Gdg~------------------------~~T 337 (587)
T PLN02313 285 GDFTTVAAAVAAAPEKSNKRFVIHIKAG-VYRENVEVTKK--KKNIMFLGDGR------------------------GKT 337 (587)
T ss_pred CCCccHHHHHHhccccCCceEEEEEeCc-eeEEEEEeCCC--CCeEEEEecCC------------------------Ccc
Confidence 3577899999965432 22358999999 99653221111 45666665541 222
Q ss_pred EEEecc-EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEEE
Q 017991 148 TVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEVI 221 (362)
Q Consensus 148 ~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I~ 221 (362)
.|+|.. ..||.. ++.. +-.....+++..+|++|.|..+. .+.+ ..++...+.+|.|.
T Consensus 338 iIt~~~~~~~g~~-t~~s----------------at~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~ 400 (587)
T PLN02313 338 IITGSRNVVDGST-TFHS----------------ATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMF 400 (587)
T ss_pred EEEeCCcccCCCC-ceee----------------EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEe
Confidence 222211 111111 1111 22334578899999999986432 2222 35677788888888
Q ss_pred CCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC---Cce--eEEeecCCCCCcccEEeEEEE
Q 017991 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP---GHG--ISIGSLGKSNSSVRIHDIMVY 296 (362)
Q Consensus 222 ~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~---~~g--i~igs~g~~~~~~~v~ni~i~ 296 (362)
+.. |-+...+ .+-..++|+|...=|=| + |.-...++||.+.. ..| -.|-.-|+ .+...-..+.|.
T Consensus 401 g~Q-----DTLy~~~-~rq~y~~c~I~GtvDFI-F--G~a~avfq~c~i~~r~~~~~~~~~iTAqgr-~~~~~~tG~v~~ 470 (587)
T PLN02313 401 AYQ-----DTLYVHS-NRQFFVKCHITGTVDFI-F--GNAAAVLQDCDINARRPNSGQKNMVTAQGR-SDPNQNTGIVIQ 470 (587)
T ss_pred ccc-----chhccCC-CcEEEEeeEEeecccee-c--cceeEEEEccEEEEecCCCCCcceEEecCC-CCCCCCceEEEE
Confidence 743 3343333 34577888887554422 2 23466778887642 111 12222221 122234577888
Q ss_pred cEEEeCCceeE----EEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 297 GALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 297 n~~i~~~~~gi----~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
||+|.+...-. ..+++-|++ ..-..+.|.+..|.+.
T Consensus 471 ~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~v~~~s~i~~~ 511 (587)
T PLN02313 471 NCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISDV 511 (587)
T ss_pred ecEEecCCccccccccchhhccCCCCCCccEEEEecccCCe
Confidence 88887653211 112223333 2344566666666654
No 66
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.88 E-value=0.0025 Score=64.16 Aligned_cols=213 Identities=11% Similarity=0.132 Sum_probs=120.1
Q ss_pred chHHHHHHHHHHHcCCC----CCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEec
Q 017991 69 DDTEAFANAWKKACSFP----ARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNR 143 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~----gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~ 143 (362)
-+-..||+||+++.... +.-+|+|.+| +|.-. +.+ +. +.+++|.++|.
T Consensus 233 G~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G-~Y~E~-V~i~~~--k~~i~l~G~g~----------------------- 285 (538)
T PLN03043 233 DNFTTITDAIAAAPNNSKPEDGYFVIYAREG-YYEEY-VVVPKN--KKNIMLIGDGI----------------------- 285 (538)
T ss_pred CCCcCHHHHHHhccccCCCCcceEEEEEcCe-eeEEE-EEeCCC--CCcEEEEecCC-----------------------
Confidence 35778999999654431 1248999999 99643 222 11 55666666541
Q ss_pred eeeEEEEecc-EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEe
Q 017991 144 VNHLTVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISN 217 (362)
Q Consensus 144 ~~ni~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n 217 (362)
+...|.|.- ..|| |. ..+ .+-.....+++..+|++|+|..+. .+.+ ..++...+.+
T Consensus 286 -~~tiIt~~~~~~dg-----~~-----------T~~-saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~ 347 (538)
T PLN03043 286 -NKTIITGNHSVVDG-----WT-----------TFN-SSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYR 347 (538)
T ss_pred -CCeEEEeCCccCCC-----Cc-----------ccc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEe
Confidence 222222211 1121 11 011 123344578999999999996432 2322 3577888999
Q ss_pred EEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC-----CceeEEeecCCCCCcccEEe
Q 017991 218 LEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP-----GHGISIGSLGKSNSSVRIHD 292 (362)
Q Consensus 218 ~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~-----~~gi~igs~g~~~~~~~v~n 292 (362)
|.|.+.. |-+...+ ..-..++|+|...=|=| ++ .-...++||++.. +..-.|-.-|+ .+...-..
T Consensus 348 C~~~gyQ-----DTLy~~~-~rq~y~~c~I~GtVDFI-FG--~a~avfq~c~i~~r~~~~~~~~~iTA~~r-~~~~~~tG 417 (538)
T PLN03043 348 CSFEGYQ-----DTLYVHS-LRQFYRECDIYGTVDFI-FG--NAAAIFQNCNLYARKPMANQKNAFTAQGR-TDPNQNTG 417 (538)
T ss_pred eEEeccC-----cccccCC-CcEEEEeeEEeeccceE-ee--cceeeeeccEEEEecCCCCCCceEEecCC-CCCCCCce
Confidence 9999854 3344333 35788899998654422 22 3467888888742 11112222121 12233467
Q ss_pred EEEEcEEEeCCceeE----EEEeeCCCC-ceEEeEEEEeEEEecCCccE
Q 017991 293 IMVYGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNVSNPI 336 (362)
Q Consensus 293 i~i~n~~i~~~~~gi----~i~~~~g~~-g~i~ni~~~ni~~~~~~~~i 336 (362)
+.|.||+|.+...-. ..+++-|++ ..-..+.|.+..|.+.=.|.
T Consensus 418 ~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~~I~p~ 466 (538)
T PLN03043 418 ISIINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGDLIQPV 466 (538)
T ss_pred EEEEecEEecCCcccccccccceeccCCCCCCceEEEEecccCCeeccc
Confidence 899999998753210 112333443 34567888888887754443
No 67
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.87 E-value=0.0027 Score=60.43 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=81.6
Q ss_pred EeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEe-eeeeccCCCCCCceEEEEe-EEECCC-CCCCcCC
Q 017991 56 FVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLI-HPIDISGPCKSRLTLEISG-TIVAPK-DPDVWKG 132 (362)
Q Consensus 56 ~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i-~~l~l~~~~~s~v~l~~~G-~i~~~~-~~~~~~~ 132 (362)
.|+.|=+.|+. -+++||++ -++|.+-||.+|.+ +++.+ .+...|.+.| +++... ++..
T Consensus 45 qvkt~~~~P~e------Dle~~I~~------haKVaL~Pg~~Y~i~~~V~I----~~~cYIiGnGA~V~v~~~~~~~--- 105 (386)
T PF01696_consen 45 QVKTYWMEPGE------DLEEAIRQ------HAKVALRPGAVYVIRKPVNI----RSCCYIIGNGATVRVNGPDRVA--- 105 (386)
T ss_pred eEEEEEcCCCc------CHHHHHHh------cCEEEeCCCCEEEEeeeEEe----cceEEEECCCEEEEEeCCCCce---
Confidence 45667777764 25666764 57888888889998 69999 6777787775 333211 1100
Q ss_pred CCccccEEEeceeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCC-CceeEEecee
Q 017991 133 LNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQ-QMHIAFTNCL 211 (362)
Q Consensus 133 ~~~~~~i~~~~~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~-~~~i~~~~~~ 211 (362)
+.+.- . ...| .+.+-.+|++.|+.|...+ .-++.+....
T Consensus 106 --------------f~v~~------~-----------------~~~P---~V~gM~~VtF~ni~F~~~~~~~g~~f~~~t 145 (386)
T PF01696_consen 106 --------------FRVCM------Q-----------------SMGP---GVVGMEGVTFVNIRFEGRDTFSGVVFHANT 145 (386)
T ss_pred --------------EEEEc------C-----------------CCCC---eEeeeeeeEEEEEEEecCCccceeEEEecc
Confidence 11100 0 0111 1223345666666666554 4445555556
Q ss_pred eEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC
Q 017991 212 RVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG 273 (362)
Q Consensus 212 nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~ 273 (362)
++.+.+|.+.+. ....++.+ ....|++|+|...--|+. ..+...+.|++|+|+..
T Consensus 146 ~~~~hgC~F~gf----~g~cl~~~--~~~~VrGC~F~~C~~gi~-~~~~~~lsVk~C~FekC 200 (386)
T PF01696_consen 146 NTLFHGCSFFGF----HGTCLESW--AGGEVRGCTFYGCWKGIV-SRGKSKLSVKKCVFEKC 200 (386)
T ss_pred eEEEEeeEEecC----cceeEEEc--CCcEEeeeEEEEEEEEee-cCCcceEEeeheeeehe
Confidence 666666666652 22233333 356666666654333332 12245666666666654
No 68
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.81 E-value=0.0006 Score=63.69 Aligned_cols=207 Identities=17% Similarity=0.258 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeE
Q 017991 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni 147 (362)
-|-..||+||+++.... ..-+|+|.+| +|.-+ +.+.- .+.+++|.+++. .+.
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E~-V~i~~-~k~~v~l~G~~~------------------------~~t 62 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPG-TYREK-VTIPR-SKPNVTLIGEGR------------------------DKT 62 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SE-EEE---EEE-S-TSTTEEEEES-T------------------------TTE
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCe-eEccc-cEecc-ccceEEEEecCC------------------------Cce
Confidence 45678999999654432 2357999999 99643 33310 035666665431 112
Q ss_pred EEEecc-EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCce----e-EEeceeeEEEEeEEEE
Q 017991 148 TVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMH----I-AFTNCLRVVISNLEVI 221 (362)
Q Consensus 148 ~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~----i-~~~~~~nv~i~n~~I~ 221 (362)
.|.+.. ..++.+ ..+...+. ...+++.+++++|.|..... + .....+.+.+.+|++.
T Consensus 63 iI~~~~~~~~~~~----------------t~~saT~~-v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~ 125 (298)
T PF01095_consen 63 IITGNDNAADGGG----------------TFRSATFS-VNADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFL 125 (298)
T ss_dssp EEEE---TTTB-H----------------CGGC-SEE-E-STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE
T ss_pred EEEEecccccccc----------------cccccccc-ccccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEc
Confidence 222210 001100 01111233 35799999999999964321 1 1246788999999999
Q ss_pred CCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC-----CceeEEeecCCCCCcccEEeEEEE
Q 017991 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP-----GHGISIGSLGKSNSSVRIHDIMVY 296 (362)
Q Consensus 222 ~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~-----~~gi~igs~g~~~~~~~v~ni~i~ 296 (362)
+ ..|-+.... .+..++||+|...-|=| ++. ....++||++.. +.+-.|-.-+. .....-....|.
T Consensus 126 g-----~QDTL~~~~-~r~y~~~c~IeG~vDFI-fG~--~~a~f~~c~i~~~~~~~~~~~~ItA~~r-~~~~~~~G~vF~ 195 (298)
T PF01095_consen 126 G-----YQDTLYANG-GRQYFKNCYIEGNVDFI-FGN--GTAVFENCTIHSRRPGGGQGGYITAQGR-TSPSQKSGFVFD 195 (298)
T ss_dssp ------STT-EEE-S-SEEEEES-EEEESEEEE-EES--SEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEE
T ss_pred c-----ccceeeecc-ceeEEEeeEEEecCcEE-ECC--eeEEeeeeEEEEeccccccceeEEeCCc-cccCCCeEEEEE
Confidence 8 445565544 46788999999665533 333 356788888752 12223322111 123345788999
Q ss_pred cEEEeCCce--------eEEE-EeeCCCCceEEeEEEEeEEEecCC
Q 017991 297 GALISNTQN--------GVRI-KTWQGGSGSATNIQFLDVLMKNVS 333 (362)
Q Consensus 297 n~~i~~~~~--------gi~i-~~~~g~~g~i~ni~~~ni~~~~~~ 333 (362)
||+|..... ...+ +.| +.-..+.|.|..|.+.=
T Consensus 196 ~c~i~~~~~~~~~~~~~~~yLGRpW----~~~s~vvf~~t~m~~~I 237 (298)
T PF01095_consen 196 NCTITGDSGVSPSYSDGSVYLGRPW----GPYSRVVFINTYMDDHI 237 (298)
T ss_dssp S-EEEESTTTCGGCCCSTEEEE--S----SEETEEEEES-EE-TTE
T ss_pred EeEEecCccccccccceeEEecCcc----cceeeEEEEccccCCee
Confidence 999987521 1121 122 23457899999998763
No 69
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.81 E-value=0.0041 Score=62.98 Aligned_cols=213 Identities=13% Similarity=0.151 Sum_probs=119.4
Q ss_pred chHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceee
Q 017991 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (362)
-|-..||+||+++.... ..-+|+|.+| +|.-+ +.+ +. +.+++|+++|. +.
T Consensus 269 G~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~--k~~i~l~G~g~------------------------~~ 320 (572)
T PLN02990 269 GQYKTINEALNAVPKANQKPFVIYIKQG-VYNEK-VDVTKK--MTHVTFIGDGP------------------------TK 320 (572)
T ss_pred CCCcCHHHHHhhCcccCCceEEEEEeCc-eeEEE-EEecCC--CCcEEEEecCC------------------------Cc
Confidence 35678999999654321 2357999999 99753 222 11 45777776651 11
Q ss_pred EEEEecc-EEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEE
Q 017991 147 LTVQGGG-TINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEV 220 (362)
Q Consensus 147 i~I~G~G-~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I 220 (362)
..|.|.- .-+|...++.. +-.....+++..+|++|+|..+. .+.+ ..++...+.+|.|
T Consensus 321 TiIt~~~~~~~g~~~T~~s----------------aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~ 384 (572)
T PLN02990 321 TKITGSLNFYIGKVKTYLT----------------ATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQI 384 (572)
T ss_pred eEEEeccccCCCCccceee----------------eEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeE
Confidence 1222210 00110011111 22334578999999999997532 2322 3578889999999
Q ss_pred ECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC---Cce--eEEeecCCCCCcccEEeEEE
Q 017991 221 IAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP---GHG--ISIGSLGKSNSSVRIHDIMV 295 (362)
Q Consensus 221 ~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~---~~g--i~igs~g~~~~~~~v~ni~i 295 (362)
.+.. |-+.... ..-..++|+|...=|=| ++ .-...++||++.. ..| -.|-.-++ .....-..+.|
T Consensus 385 ~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf 454 (572)
T PLN02990 385 DGYQ-----DTLYVHS-HRQFFRDCTVSGTVDFI-FG--DAKVVLQNCNIVVRKPMKGQSCMITAQGR-SDVRESTGLVL 454 (572)
T ss_pred eccc-----chhccCC-CcEEEEeeEEecccceE-cc--CceEEEEccEEEEecCCCCCceEEEeCCC-CCCCCCceEEE
Confidence 9844 3344333 35678999998654432 22 3467888888752 111 22322221 12223467899
Q ss_pred EcEEEeCCceeEE----EEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 296 YGALISNTQNGVR----IKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 296 ~n~~i~~~~~gi~----i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
.||+|.+...... .+++-|++ +.-..+.|.+..|.+.=.|
T Consensus 455 ~~C~it~~~~~~~~~~~~~~yLGRpW~~ysrvV~~~s~i~~~I~p 499 (572)
T PLN02990 455 QNCHITGEPAYIPVKSINKAYLGRPWKEFSRTIIMGTTIDDVIDP 499 (572)
T ss_pred EeeEEecCccccccccccceEeecCCCCCceEEEEecccCCeecc
Confidence 9999988642111 12333433 3456788888888775333
No 70
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.80 E-value=0.0027 Score=63.86 Aligned_cols=209 Identities=13% Similarity=0.152 Sum_probs=115.2
Q ss_pred chHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceee
Q 017991 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNH 146 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~n 146 (362)
-|-..||+||+++.+.. ..-+|+|.+| +|.-+ +.+ +. +.+++|.++|. +.
T Consensus 240 G~f~TIq~Ai~a~p~~~~~r~vI~Ik~G-vY~E~-V~i~~~--k~~i~l~G~g~------------------------~~ 291 (541)
T PLN02416 240 GNFSTITDAINFAPNNSNDRIIIYVREG-VYEEN-VEIPIY--KTNIVLIGDGS------------------------DV 291 (541)
T ss_pred CCccCHHHHHHhhhhcCCceEEEEEeCc-eeEEE-EecCCC--CccEEEEecCC------------------------Cc
Confidence 35778999999654432 2357899999 99643 333 11 45677666541 11
Q ss_pred EEEEeccE-EecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeE-EeceeeEEEEeEEE
Q 017991 147 LTVQGGGT-INGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIA-FTNCLRVVISNLEV 220 (362)
Q Consensus 147 i~I~G~G~-idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~-~~~~~nv~i~n~~I 220 (362)
..|.|... .|| |. ..+. +-.....+++..+|++|+|.... .+. -..++.+.+.+|+|
T Consensus 292 TiIt~~~~~~~g-----~~-----------T~~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~ 354 (541)
T PLN02416 292 TFITGNRSVVDG-----WT-----------TFRS-ATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTI 354 (541)
T ss_pred eEEeCCCccCCC-----CC-----------ccce-EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceE
Confidence 12222110 111 00 0111 22333578999999999996432 122 23578888999999
Q ss_pred ECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC---Cce--eEEeecCCCCCcccEEeEEE
Q 017991 221 IAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP---GHG--ISIGSLGKSNSSVRIHDIMV 295 (362)
Q Consensus 221 ~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~---~~g--i~igs~g~~~~~~~v~ni~i 295 (362)
.+..| -+...+ .+-..++|+|...=|=| ++ .-...++||++.. ..| -.|-.-++ .....-..+.|
T Consensus 355 ~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf 424 (541)
T PLN02416 355 NGYQD-----TLYVHS-FRQFYRECDIYGTIDYI-FG--NAAVVFQACNIVSKMPMPGQFTVITAQSR-DTPDEDTGISI 424 (541)
T ss_pred ecccc-----hhccCC-CceEEEeeEEeecccee-ec--cceEEEeccEEEEecCCCCCceEEECCCC-CCCCCCCEEEE
Confidence 88543 333333 46688899998654422 22 3467888887742 111 12222111 12233467889
Q ss_pred EcEEEeCCceeE----EEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 296 YGALISNTQNGV----RIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 296 ~n~~i~~~~~gi----~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
.||+|.+...-. ..++.-|++ +.-..+.|.+..|.+.
T Consensus 425 ~~c~i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~~ 466 (541)
T PLN02416 425 QNCSILATEDLYSNSNSVKSYLGRPWRVYSRTVVLESYIDDF 466 (541)
T ss_pred EeeEEecCCccccccccccccccCCCCCCccEEEEecccCCe
Confidence 999988653210 123333443 3456777777777775
No 71
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.79 E-value=0.0032 Score=64.47 Aligned_cols=213 Identities=11% Similarity=0.104 Sum_probs=118.0
Q ss_pred chHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeE
Q 017991 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~-~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni 147 (362)
-|-..||+||+++.+. ...-+|+|-+| +|.=+-..=+. +.+++|+++| .+..
T Consensus 260 G~f~TIq~Av~a~P~~~~~r~vI~Ik~G-vY~E~V~I~~~--k~~i~l~Gdg------------------------~~~T 312 (670)
T PLN02217 260 GQYKTINEALNFVPKKKNTTFVVHIKAG-IYKEYVQVNRS--MTHLVFIGDG------------------------PDKT 312 (670)
T ss_pred CCccCHHHHHHhccccCCceEEEEEeCC-ceEEEEEEcCC--CCcEEEEecC------------------------CCCe
Confidence 3577899999965432 22357999999 99654221111 3455555554 1112
Q ss_pred EEEeccE-EecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEEE
Q 017991 148 TVQGGGT-INGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEVI 221 (362)
Q Consensus 148 ~I~G~G~-idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I~ 221 (362)
.|.|... -||.+ ++. .+-......++..+|++|+|..+- .+.+ ...+...+.+|+|.
T Consensus 313 iIt~~~~~~dg~~-T~~----------------SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~ 375 (670)
T PLN02217 313 VISGSKSYKDGIT-TYK----------------TATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFD 375 (670)
T ss_pred EEEcCCccCCCCC-ccc----------------eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceee
Confidence 2222100 01100 111 122334578999999999996431 2322 35788899999999
Q ss_pred CCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCC-----ceeEEeecCCCCCcccEEeEEEE
Q 017991 222 APAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPG-----HGISIGSLGKSNSSVRIHDIMVY 296 (362)
Q Consensus 222 ~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~-----~gi~igs~g~~~~~~~v~ni~i~ 296 (362)
+.+ |-+.... .+-..++|+|...=|=| ++ .....++||++..- ..-.|-.-|+ .+...-..+.|.
T Consensus 376 G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~ 445 (670)
T PLN02217 376 GYQ-----DTLYAHS-HRQFYRDCTISGTIDFL-FG--DAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQ 445 (670)
T ss_pred ecc-----chhccCC-CcEEEEeCEEEEeccEE-ec--CceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEE
Confidence 844 3344333 46788899998653422 22 34678888887521 1122322222 122344678999
Q ss_pred cEEEeCCceeEE----EEeeCCCC-ceEEeEEEEeEEEecCCcc
Q 017991 297 GALISNTQNGVR----IKTWQGGS-GSATNIQFLDVLMKNVSNP 335 (362)
Q Consensus 297 n~~i~~~~~gi~----i~~~~g~~-g~i~ni~~~ni~~~~~~~~ 335 (362)
||+|.+...-+. .+++-|++ +.-..+.|.+..|.+.=.|
T Consensus 446 ~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~I~P 489 (670)
T PLN02217 446 GCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDFVPP 489 (670)
T ss_pred eeEEecCccccccccccceeeccCCCCCceEEEEecccCCeEcC
Confidence 999987542111 12333433 3456788888888775333
No 72
>PLN02197 pectinesterase
Probab=97.73 E-value=0.0044 Score=62.79 Aligned_cols=211 Identities=14% Similarity=0.105 Sum_probs=119.3
Q ss_pred chHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEeEEECCCCCCCcCCCCccccEEEeceeeE
Q 017991 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISGTIVAPKDPDVWKGLNRRRWLYFNRVNHL 147 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~~~i~~~~~~ni 147 (362)
-|-..||+||+++.... ..-+|+|.+| +|.=+ +.+.- .+.+++|+++|. +..
T Consensus 285 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~-~k~ni~l~G~g~------------------------~~T 337 (588)
T PLN02197 285 GQFKTISQAVMACPDKNPGRCIIHIKAG-IYNEQ-VTIPK-KKNNIFMFGDGA------------------------RKT 337 (588)
T ss_pred CCcCCHHHHHHhccccCCceEEEEEeCc-eEEEE-EEccC-CCceEEEEEcCC------------------------CCe
Confidence 35778999999654432 2347899999 99643 22210 045666666541 112
Q ss_pred EEEeccE---EecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEE
Q 017991 148 TVQGGGT---INGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLE 219 (362)
Q Consensus 148 ~I~G~G~---idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~ 219 (362)
.|++... .+|.+ ++ + .+-.....+++..+|++|.|..+. .+.+ ..++...+.+|.
T Consensus 338 iIt~~~~~~~~~g~~-T~---------------~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~ 400 (588)
T PLN02197 338 VISYNRSVKLSPGTT-TS---------------L-SGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCR 400 (588)
T ss_pred EEEeccccccCCCCc-cc---------------c-eeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeE
Confidence 2222100 01110 01 1 122334588999999999996432 2333 358899999999
Q ss_pred EECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcC---Cce--eEEeecCCCCCcccEEeEE
Q 017991 220 VIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGP---GHG--ISIGSLGKSNSSVRIHDIM 294 (362)
Q Consensus 220 I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~---~~g--i~igs~g~~~~~~~v~ni~ 294 (362)
|.+.. |-+.... .+-..++|+|...=|=| ++ .....++||++.. ..| -.|-.-++......-..+.
T Consensus 401 f~GyQ-----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~v 471 (588)
T PLN02197 401 FDGYQ-----DTLYVNN-GRQFYRNIVVSGTVDFI-FG--KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIV 471 (588)
T ss_pred EEecC-----cceEecC-CCEEEEeeEEEeccccc-cc--ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEE
Confidence 99844 4455444 46689999999653422 22 3457889998752 122 2232222111123346789
Q ss_pred EEcEEEeCCcee----EEEEeeCCCC-ceEEeEEEEeEEEecC
Q 017991 295 VYGALISNTQNG----VRIKTWQGGS-GSATNIQFLDVLMKNV 332 (362)
Q Consensus 295 i~n~~i~~~~~g----i~i~~~~g~~-g~i~ni~~~ni~~~~~ 332 (362)
|.||+|.+...- ...+++-|++ +.-..+.|.+..|.+.
T Consensus 472 f~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~~ 514 (588)
T PLN02197 472 LQNCRIVPDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGDL 514 (588)
T ss_pred EEccEEecCCcccccccccccccCCCCCCCceEEEEecccCCe
Confidence 999999885421 1223344443 3466778888888654
No 73
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.56 E-value=0.00088 Score=58.98 Aligned_cols=119 Identities=19% Similarity=0.239 Sum_probs=75.0
Q ss_pred EEE-EeecceEEEceEEeeC---------------CCceeEEeceeeEEEEeEEEECCCC---CCCCCe-eeec-CccCE
Q 017991 182 ITF-HKCKNLKVQNLRVVNS---------------QQMHIAFTNCLRVVISNLEVIAPAE---SPNTDG-IHIS-ASRGV 240 (362)
Q Consensus 182 i~~-~~~~nv~I~~v~i~n~---------------~~~~i~~~~~~nv~i~n~~I~~~~~---~~~~DG-I~~~-~s~nv 240 (362)
+.+ ..++||.|++++|+.. ....+.+..+++|-|++|++..... ....|| +++. .+.+|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 444 4899999999999982 3446888999999999999997411 112555 6775 58899
Q ss_pred EEEeeEEecCCccEEEcCC-------ceeEEEEeeEEcCCce--eEEeecCCCCCcccEEeEEEEcEEEeC-CceeEEEE
Q 017991 241 EVKNSIVGTGDDCISIVGN-------SSLIRIRNFACGPGHG--ISIGSLGKSNSSVRIHDIMVYGALISN-TQNGVRIK 310 (362)
Q Consensus 241 ~I~n~~i~~gdD~i~i~s~-------~~ni~i~n~~~~~~~g--i~igs~g~~~~~~~v~ni~i~n~~i~~-~~~gi~i~ 310 (362)
||++|.|...+.+..+++. ..++++.+|.|....+ =.+ ..-.+++-|+.+.+ ..+++...
T Consensus 119 TiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~----------r~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV----------RFGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp EEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE----------CSCEEEEES-EEEEECSESEEEE
T ss_pred EEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc----------cccEEEEEEeeeECCCCEEEEcc
Confidence 9999999875444444331 3689999998864321 011 11247788887755 44566654
No 74
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.28 E-value=0.00029 Score=48.12 Aligned_cols=38 Identities=34% Similarity=0.525 Sum_probs=23.7
Q ss_pred ccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcCCcEEEeeee
Q 017991 62 AKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPI 103 (362)
Q Consensus 62 a~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l 103 (362)
|+|||++|||+||.+|+++ .. .+.++=-.|.||.+.+|
T Consensus 1 A~GDGvtdDt~A~~a~l~a-~~---~g~~IDg~GlTykVs~l 38 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEA-SP---VGRKIDGAGLTYKVSSL 38 (67)
T ss_dssp ---CCCCE-HHHHHHHHHH-S----TTS-EE-TT-EEEESS-
T ss_pred CCCccccCcHHHHHHHHhc-cC---CCeEEecCCceEEEeeC
Confidence 6899999999999999983 22 35555667779988765
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.026 Score=52.10 Aligned_cols=137 Identities=14% Similarity=0.205 Sum_probs=75.9
Q ss_pred EEeecceEEEceEEeeCCCce---------eEEeceeeEEEEeEEEECCCCCCCCCeeeecCc-----------cCEEEE
Q 017991 184 FHKCKNLKVQNLRVVNSQQMH---------IAFTNCLRVVISNLEVIAPAESPNTDGIHISAS-----------RGVEVK 243 (362)
Q Consensus 184 ~~~~~nv~I~~v~i~n~~~~~---------i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s-----------~nv~I~ 243 (362)
+...+++.+++++++|....+ ....+.+.+.++||++.+.. |-+-...+ -.-.++
T Consensus 185 ~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~Q-----dTlFv~~~~~~~~~~tn~~~R~yft 259 (405)
T COG4677 185 WVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQ-----DTLFVGNSGVQNRLETNRQPRTYFT 259 (405)
T ss_pred eeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeecc-----ceEEecCCCCccccccCcchhhhee
Confidence 334567888888888754433 22347888999999999843 33333222 255789
Q ss_pred eeEEecCCccEEEcCCceeEEEEeeEEcC------CceeEEeecCCCCCcccEEeEEEEcEEEeCCce-e-EEE-EeeCC
Q 017991 244 NSIVGTGDDCISIVGNSSLIRIRNFACGP------GHGISIGSLGKSNSSVRIHDIMVYGALISNTQN-G-VRI-KTWQG 314 (362)
Q Consensus 244 n~~i~~gdD~i~i~s~~~ni~i~n~~~~~------~~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~-g-i~i-~~~~g 314 (362)
||+|+ ||--+.++++ -.++.+|.+.. -.|.-+-.. .-........+-|+++..... + +.+ +.|+-
T Consensus 260 NsyI~-GdvDfIfGsg--taVFd~c~i~~~d~r~~~~gYIfApS---T~~~~~YGflalNsrfna~g~~~s~~LGRpwd~ 333 (405)
T COG4677 260 NSYIE-GDVDFIFGSG--TAVFDNCEIQVVDSRTQQEGYIFAPS---TLSGIPYGFLALNSRFNASGDAGSAQLGRPWDV 333 (405)
T ss_pred cceec-ccceEEeccc--eEEeccceEEEeccCCCcceeEeccC---CCCCCceeEEEEeeeeecCCCCCeeeecCcccc
Confidence 99999 4433444443 46777776642 123222110 123345666777888876544 2 111 13332
Q ss_pred CCceEEeEEEEeEEEec
Q 017991 315 GSGSATNIQFLDVLMKN 331 (362)
Q Consensus 315 ~~g~i~ni~~~ni~~~~ 331 (362)
.....--+.|+|..|..
T Consensus 334 ~a~~nGQvVirds~m~e 350 (405)
T COG4677 334 DANTNGQVVIRDSVMGE 350 (405)
T ss_pred ccccCceEEEEeccccc
Confidence 22223347777776654
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.06 Score=50.09 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=10.9
Q ss_pred EEEcEEEeCCceeEEEEe
Q 017991 294 MVYGALISNTQNGVRIKT 311 (362)
Q Consensus 294 ~i~n~~i~~~~~gi~i~~ 311 (362)
.|++|+|.++.-||.+..
T Consensus 275 ki~~n~feg~~iGIhlta 292 (408)
T COG3420 275 KIRGNSFEGCAIGIHLTA 292 (408)
T ss_pred hhccceeecceEEEEEec
Confidence 456666666666666653
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.83 E-value=1.2 Score=39.32 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=75.9
Q ss_pred ecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCcc-CEEEEeeEEecCCccEEEcCCceeEEE
Q 017991 187 CKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASR-GVEVKNSIVGTGDDCISIVGNSSLIRI 265 (362)
Q Consensus 187 ~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~-nv~I~n~~i~~gdD~i~i~s~~~ni~i 265 (362)
....+|+++.|-.+..-+||... +.+|+|+..+.. ..|.+.+.+.. .++|.+.-.+..+|=+.=..+...++|
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I 133 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTI 133 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEE
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEE
Confidence 35778888888666666777765 667888887773 56777777655 677777777776665544445566777
Q ss_pred EeeEEcCCceeEEeecCCCCCc-ccEEeEEEEcEEEeCCceeEEEEeeCCCCceEEeEEEEe
Q 017991 266 RNFACGPGHGISIGSLGKSNSS-VRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLD 326 (362)
Q Consensus 266 ~n~~~~~~~gi~igs~g~~~~~-~~v~ni~i~n~~i~~~~~gi~i~~~~g~~g~i~ni~~~n 326 (362)
+|-+.. ..|--+-|-|.-... ..-+++.+++........-+.|....+....|+++.++.
T Consensus 134 ~nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 134 KNFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp EEEEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred EeEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 774432 223222232221121 244667776655443332345666666656666666555
No 78
>PLN02480 Probable pectinesterase
Probab=95.73 E-value=0.82 Score=43.55 Aligned_cols=133 Identities=8% Similarity=0.026 Sum_probs=86.2
Q ss_pred EeceeeEEEEeEEEECCCC-----CCCCCeeee-cCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEee
Q 017991 207 FTNCLRVVISNLEVIAPAE-----SPNTDGIHI-SASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGS 280 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~-----~~~~DGI~~-~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs 280 (362)
....++++++|++|.+... .....++.+ ..++++.+.||.|...-|.+-... ..-.++||++++.-.+-+|.
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~ 205 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR 205 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc
Confidence 4456889999999998632 112356665 347899999999998888876554 35689999998877777776
Q ss_pred cCCCCCcccEEeEEEEcEEEeCCc------eeEEEEeeCCCCceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCC
Q 017991 281 LGKSNSSVRIHDIMVYGALISNTQ------NGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVC 354 (362)
Q Consensus 281 ~g~~~~~~~v~ni~i~n~~i~~~~------~gi~i~~~~g~~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~ 354 (362)
-...|+||++.-.. .|. |..+......-.+..|.|+++.... .+.+. -.+ .++-+
T Consensus 206 ----------g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r~~~~~~GfvF~~C~i~g~g-~~yLG----RPW---~~ya~ 266 (343)
T PLN02480 206 ----------GRSIFHNCEIFVIADRRVKIYGS-ITAHNRESEDNSGFVFIKGKVYGIG-EVYLG----RAK---GAYSR 266 (343)
T ss_pred ----------eeEEEEccEEEEecCCCCCCceE-EEcCCCCCCCCCEEEEECCEEcccC-ceeee----cCC---CCcce
Confidence 35688888886431 132 3322111133457899999998743 12222 122 34666
Q ss_pred ceeeee
Q 017991 355 NPYATC 360 (362)
Q Consensus 355 ~~~~~~ 360 (362)
.||++|
T Consensus 267 vVf~~t 272 (343)
T PLN02480 267 VIFAKT 272 (343)
T ss_pred EEEEec
Confidence 777776
No 79
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=95.51 E-value=0.74 Score=44.85 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=10.5
Q ss_pred eEEeEEEEeEEEecCCccEEEE
Q 017991 318 SATNIQFLDVLMKNVSNPIIID 339 (362)
Q Consensus 318 ~i~ni~~~ni~~~~~~~~i~i~ 339 (362)
.+.|+++.|+++.+++.||.+.
T Consensus 308 qv~nv~I~~NT~In~~~~i~~g 329 (425)
T PF14592_consen 308 QVKNVLIANNTFINCKSPIHFG 329 (425)
T ss_dssp --BSEEEES-EEES-SEEEESS
T ss_pred ccceeEEecceEEccCCceEEc
Confidence 4556666666666666555443
No 80
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=94.99 E-value=1.9 Score=39.54 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=13.5
Q ss_pred CcEEEEcCCcEEEe-eeeec
Q 017991 87 RTKIVFSAGYTFLI-HPIDI 105 (362)
Q Consensus 87 g~~v~~P~G~~Y~i-~~l~l 105 (362)
..-+++|+|+|.++ +.+.-
T Consensus 71 nt~ifip~gktl~v~g~l~g 90 (464)
T PRK10123 71 NTGIFIPPGKTLHILGSLRG 90 (464)
T ss_pred ccceEeCCCCeEEEEEEeec
Confidence 35688999988877 45543
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=94.40 E-value=0.071 Score=34.39 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=19.7
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEe
Q 017991 206 AFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVG 248 (362)
Q Consensus 206 ~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~ 248 (362)
.+..+.+.+|++.+|.. +.|||++..|.+.+|+++.+.
T Consensus 3 ~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 3 YLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 34444445555555554 444555555555555555544
No 82
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=94.36 E-value=1.1 Score=39.52 Aligned_cols=119 Identities=13% Similarity=0.173 Sum_probs=73.7
Q ss_pred eeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEec-CCccEEEcCCceeEEEEeeEEcCCce--eEEeecCCCCCc
Q 017991 211 LRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT-GDDCISIVGNSSLIRIRNFACGPGHG--ISIGSLGKSNSS 287 (362)
Q Consensus 211 ~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~-gdD~i~i~s~~~ni~i~n~~~~~~~g--i~igs~g~~~~~ 287 (362)
+..+++|+.|-. +..||||..+ +-+|+|..... +.|+++++.....++|.+.-..+... |....
T Consensus 61 ~GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng------- 127 (215)
T PF03211_consen 61 DGATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHNG------- 127 (215)
T ss_dssp TTEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S-------
T ss_pred CCCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEecC-------
Confidence 456788888855 4789999988 78999999987 79999999965566666665444332 33322
Q ss_pred ccEEeEEEEcEEEeCCceeEEEEeeCC---CCceEEeEEEEeEEEecCCccEEEEeeeCCCC
Q 017991 288 VRIHDIMVYGALISNTQNGVRIKTWQG---GSGSATNIQFLDVLMKNVSNPIIIDQYYCDSP 346 (362)
Q Consensus 288 ~~v~ni~i~n~~i~~~~~gi~i~~~~g---~~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~ 346 (362)
--.+.|+|-+..+ .|-.+++.-+ ..+.=+.|.+++........-+.|...|+|..
T Consensus 128 --~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~a 185 (215)
T PF03211_consen 128 --GGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTA 185 (215)
T ss_dssp --SEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTE
T ss_pred --ceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeE
Confidence 1357777755554 3544555322 11345677777776654444456777777754
No 83
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=94.19 E-value=0.073 Score=34.34 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=33.1
Q ss_pred eeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEc
Q 017991 231 GIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACG 271 (362)
Q Consensus 231 GI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~ 271 (362)
||.++.|.+.+|+++.+....++|.+.. +.+.+++++++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEEE
Confidence 6889889999999999999888998887 456677777664
No 84
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=93.86 E-value=0.96 Score=42.34 Aligned_cols=134 Identities=10% Similarity=0.060 Sum_probs=76.3
Q ss_pred EeceeeEEEEeEEEECCCCC--CCCCeeeecCccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCC
Q 017991 207 FTNCLRVVISNLEVIAPAES--PNTDGIHISASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~--~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 284 (362)
....+++.++|++|.+.... ..+-.+.+. +++..+.+|.|...-|.+....+ ...++||++++.-.+-+|.
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~~--r~y~~~c~IeG~vDFIfG~---- 155 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALRVS-GDRAAFYNCRFLGYQDTLYANGG--RQYFKNCYIEGNVDFIFGN---- 155 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEEET--TSEEEEEEEEE-STT-EEE-SS--EEEEES-EEEESEEEEEES----
T ss_pred cccccceeeeeeEEecCCCCcccceeeeeec-CCcEEEEEeEEccccceeeeccc--eeEEEeeEEEecCcEEECC----
Confidence 34578899999999875422 223345544 47899999999998888876653 6789999999887788886
Q ss_pred CCcccEEeEEEEcEEEeCCc----eeEEEEeeC-CCCceEEeEEEEeEEEecCC--------ccEEEEeeeCCCCCCCCC
Q 017991 285 NSSVRIHDIMVYGALISNTQ----NGVRIKTWQ-GGSGSATNIQFLDVLMKNVS--------NPIIIDQYYCDSPVPCAN 351 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~----~gi~i~~~~-g~~g~i~ni~~~ni~~~~~~--------~~i~i~~~y~~~~~~c~~ 351 (362)
-...|+||++.-.. .+-.|.... .....-.++.|.|+++.... ....+..-|. +
T Consensus 156 ------~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGRpW~-------~ 222 (298)
T PF01095_consen 156 ------GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGRPWG-------P 222 (298)
T ss_dssp ------SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE--SS-------E
T ss_pred ------eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCccccccccceeEEecCccc-------c
Confidence 24578888886421 122333221 11234567899999998753 2344443232 3
Q ss_pred CCCceeeee
Q 017991 352 QVCNPYATC 360 (362)
Q Consensus 352 ~~~~~~~~~ 360 (362)
+-+.||++|
T Consensus 223 ~s~vvf~~t 231 (298)
T PF01095_consen 223 YSRVVFINT 231 (298)
T ss_dssp ETEEEEES-
T ss_pred eeeEEEEcc
Confidence 345677776
No 85
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=93.78 E-value=2 Score=43.08 Aligned_cols=142 Identities=9% Similarity=0.007 Sum_probs=80.4
Q ss_pred EEeecceEEEceEEeeCCCc----eeEE-eceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecCCccEEEcC
Q 017991 184 FHKCKNLKVQNLRVVNSQQM----HIAF-TNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTGDDCISIVG 258 (362)
Q Consensus 184 ~~~~~nv~I~~v~i~n~~~~----~i~~-~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~gdD~i~i~s 258 (362)
....+++..+|++|+|..+. .+.+ ...+...+.+|.|.+.. |-+.... .+-..++|+|...=|=| ++.
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFI-FG~ 338 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFI-FGN 338 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceE-ecc
Confidence 34578999999999987542 2222 35778888888888743 3344333 34578888888543422 232
Q ss_pred CceeEEEEeeEEcC---Cce--eEEeecCCCCCcccEEeEEEEcEEEeCCceeEE----EEeeCCCC-ceEEeEEEEeEE
Q 017991 259 NSSLIRIRNFACGP---GHG--ISIGSLGKSNSSVRIHDIMVYGALISNTQNGVR----IKTWQGGS-GSATNIQFLDVL 328 (362)
Q Consensus 259 ~~~ni~i~n~~~~~---~~g--i~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~----i~~~~g~~-g~i~ni~~~ni~ 328 (362)
....++||++.. ..+ -.|-.-++ .....-..+.|.||++.+...... .++.-|++ +.-..+.|.+..
T Consensus 339 --a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s~ 415 (497)
T PLN02698 339 --AAAVFQNCYLFLRRPHGKSYNVILANGR-SDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMESY 415 (497)
T ss_pred --cceeecccEEEEecCCCCCceEEEecCC-CCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEecc
Confidence 456888887742 111 12222121 122233678888888877542111 22333443 345567777777
Q ss_pred EecCCcc
Q 017991 329 MKNVSNP 335 (362)
Q Consensus 329 ~~~~~~~ 335 (362)
|.+.=.|
T Consensus 416 l~~~I~p 422 (497)
T PLN02698 416 IDDAIAE 422 (497)
T ss_pred cCCcccC
Confidence 7765333
No 86
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=93.76 E-value=1.3 Score=37.90 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=36.0
Q ss_pred ccCEEEEeeEEecC-C------ccEEEcCCceeEEEEeeEEcCCceeEEeec---CCCCCcccEEeEEEEcEEEeCCc
Q 017991 237 SRGVEVKNSIVGTG-D------DCISIVGNSSLIRIRNFACGPGHGISIGSL---GKSNSSVRIHDIMVYGALISNTQ 304 (362)
Q Consensus 237 s~nv~I~n~~i~~g-d------D~i~i~s~~~ni~i~n~~~~~~~gi~igs~---g~~~~~~~v~ni~i~n~~i~~~~ 304 (362)
.++|.|+++.|... - -+-.+.+|..|.+|+|+.|.+..+..|... +.....+.-.-.+++|+.|.++.
T Consensus 33 a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 33 AKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred cccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 34677777766541 0 111233456788888888887654333221 10011122334778888887763
No 87
>PLN02197 pectinesterase
Probab=93.70 E-value=2.2 Score=43.58 Aligned_cols=138 Identities=10% Similarity=0.051 Sum_probs=89.0
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.++||++++.-.+-+|.
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----- 432 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIFGK----- 432 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccccc-----
Confidence 44578888999999886543334445443 357999999999988888877663 3489999998877777776
Q ss_pred CcccEEeEEEEcEEEeCC--cee--EEEEeeCCC---CceEEeEEEEeEEEecCCc--cE--EEEeeeCCCCCCCCCCCC
Q 017991 286 SSVRIHDIMVYGALISNT--QNG--VRIKTWQGG---SGSATNIQFLDVLMKNVSN--PI--IIDQYYCDSPVPCANQVC 354 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~--~~g--i~i~~~~g~---~g~i~ni~~~ni~~~~~~~--~i--~i~~~y~~~~~~c~~~~~ 354 (362)
-...|+||++.-. ..| -.| +.+++ +..-.++.|.|+++..... +. ....+.+-.+ .++-+
T Consensus 433 -----a~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW---~~ysr 503 (588)
T PLN02197 433 -----SATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPW---KKFST 503 (588)
T ss_pred -----eeeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCC---CCCce
Confidence 3478888887532 112 123 33443 2345689999999988542 11 1111223333 34677
Q ss_pred ceeeee
Q 017991 355 NPYATC 360 (362)
Q Consensus 355 ~~~~~~ 360 (362)
-|||+|
T Consensus 504 vV~~~s 509 (588)
T PLN02197 504 TVIIST 509 (588)
T ss_pred EEEEec
Confidence 888877
No 88
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=93.31 E-value=0.84 Score=41.34 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=62.4
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEec-CCccEEEcCCceeEEEEeeEEcCCceeEEeecCCC
Q 017991 206 AFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGT-GDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (362)
Q Consensus 206 ~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~-gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 284 (362)
.+....+.+|++++|+++.. ...-|+.+.++ +.+|+||+|.. .. .|+.+...
T Consensus 92 tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~----------------------~GI~v~g~--- 144 (246)
T PF07602_consen 92 TIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGR----------------------EGIFVTGT--- 144 (246)
T ss_pred EEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCcc----------------------ccEEEEee---
Confidence 34445677788888888521 13345666554 55666655553 12 23333221
Q ss_pred CCcccEEeEEEEcEEEeCCceeEEEEeeCCCCceEEeEEEEeEEEecCCccEEEE
Q 017991 285 NSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNVSNPIIID 339 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~g~i~ni~~~ni~~~~~~~~i~i~ 339 (362)
.....+.++.|+++.+.....||.+...... +.| .++|+.+++...+|.+.
T Consensus 145 ~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~~---~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 145 SANPGINGNVISGNSIYFNKTGISISDNAAP---VEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred ecCCcccceEeecceEEecCcCeEEEcccCC---ccc-eeeccEEEeCCcCeEee
Confidence 1134678888999999998889988754332 333 44777887766677644
No 89
>PLN02432 putative pectinesterase
Probab=93.11 E-value=3.2 Score=38.65 Aligned_cols=111 Identities=13% Similarity=0.066 Sum_probs=74.3
Q ss_pred eceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCCC
Q 017991 208 TNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSNS 286 (362)
Q Consensus 208 ~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~~ 286 (362)
...+++.++|++|.+... .....+.+. .++...+.+|.|...-|.+-...+ .-.++||.+++.-.+-+|.
T Consensus 91 v~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~g--r~yf~~c~I~G~VDFIFG~------ 161 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDTG--RHYYRNCYIEGATDFICGN------ 161 (293)
T ss_pred EECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECCC--CEEEEeCEEEecccEEecC------
Confidence 345788899999988542 122333332 358999999999988888876553 5699999999877777776
Q ss_pred cccEEeEEEEcEEEeCC--ceeEEEEeeC-CCCceEEeEEEEeEEEecC
Q 017991 287 SVRIHDIMVYGALISNT--QNGVRIKTWQ-GGSGSATNIQFLDVLMKNV 332 (362)
Q Consensus 287 ~~~v~ni~i~n~~i~~~--~~gi~i~~~~-g~~g~i~ni~~~ni~~~~~ 332 (362)
-...|++|++.-. ..| .|..+. .....-.+..|.|.++...
T Consensus 162 ----g~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg~ 205 (293)
T PLN02432 162 ----AASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTGA 205 (293)
T ss_pred ----ceEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEccc
Confidence 3467888888532 123 333221 1123345789999999863
No 90
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=92.12 E-value=9.7 Score=36.73 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=61.2
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecC-CccEEEcCCceeEEEEeeEEcCCc-eeEEeecCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTG-DDCISIVGNSSLIRIRNFACGPGH-GISIGSLGKS 284 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~g-dD~i~i~s~~~ni~i~n~~~~~~~-gi~igs~g~~ 284 (362)
+..=.+|++.|+++...+ ...|+-+.+..++++.+|.|.+- -.|+.... ...|+.|+|.+.. |+.-
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~---~~~VrGC~F~~C~~gi~~------ 184 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESWA---GGEVRGCTFYGCWKGIVS------ 184 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEcC---CcEEeeeEEEEEEEEeec------
Confidence 344467899999999753 35678888889999999999953 33444443 5689999997653 4432
Q ss_pred CCcccEEeEEEEcEEEeCCceeE
Q 017991 285 NSSVRIHDIMVYGALISNTQNGV 307 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~~gi 307 (362)
.....+.+++|+|..+.-||
T Consensus 185 ---~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 ---RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred ---CCcceEEeeheeeeheEEEE
Confidence 13467788888888876665
No 91
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=91.80 E-value=7.8 Score=37.92 Aligned_cols=118 Identities=7% Similarity=0.034 Sum_probs=77.6
Q ss_pred EEeceeeEEEEeEEEECCCC----CCCCCeeeec-CccCEEEEeeEEecCCccEEEcCC----------ceeEEEEeeEE
Q 017991 206 AFTNCLRVVISNLEVIAPAE----SPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGN----------SSLIRIRNFAC 270 (362)
Q Consensus 206 ~~~~~~nv~i~n~~I~~~~~----~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~----------~~ni~i~n~~~ 270 (362)
.....+++..+|++|.+... ..+...+.+. .++.+.+.+|.|...-|.+..... ...-.++||.+
T Consensus 201 v~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyI 280 (422)
T PRK10531 201 FWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYI 280 (422)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEE
Confidence 34567889999999998642 1122333332 357999999999988888876421 22579999999
Q ss_pred cCCceeEEeecCCCCCcccEEeEEEEcEEEeCCce----eEEEEeeCCCCceEEeEEEEeEEEecCC
Q 017991 271 GPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQN----GVRIKTWQGGSGSATNIQFLDVLMKNVS 333 (362)
Q Consensus 271 ~~~~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~----gi~i~~~~g~~g~i~ni~~~ni~~~~~~ 333 (362)
++.-.+-+|. -...|+||+|.-... .-.|.........-.+..|.|+++....
T Consensus 281 eG~VDFIFG~----------g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~g 337 (422)
T PRK10531 281 EGDVDFVFGR----------GAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNASG 337 (422)
T ss_pred eecccEEccC----------ceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecCC
Confidence 9877777776 356788888864321 1222221112234457899999998853
No 92
>PLN02773 pectinesterase
Probab=91.51 E-value=13 Score=35.19 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeeccCCCCCCceEEEEe
Q 017991 70 DTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDISGPCKSRLTLEISG 119 (362)
Q Consensus 70 dt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~G 119 (362)
|-..||+||+++.... ..-+|+|.+| +|.= .|.+.. .+.+++|.+++
T Consensus 16 df~TIq~Aida~P~~~~~~~~I~Ik~G-~Y~E-~V~I~~-~k~~itl~G~~ 63 (317)
T PLN02773 16 DYCTVQDAIDAVPLCNRCRTVIRVAPG-VYRQ-PVYVPK-TKNLITLAGLS 63 (317)
T ss_pred CccCHHHHHhhchhcCCceEEEEEeCc-eEEE-EEEECc-CCccEEEEeCC
Confidence 4778999999654432 2357889999 9974 333310 04467777763
No 93
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=90.60 E-value=11 Score=36.58 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=28.3
Q ss_pred eeEEEEeeEEcCCceeEEeecCCCCCcccEEeEEEEcEEEeCCceeEEEEeeCCCCceEEeEEEEeEEEecC
Q 017991 261 SLIRIRNFACGPGHGISIGSLGKSNSSVRIHDIMVYGALISNTQNGVRIKTWQGGSGSATNIQFLDVLMKNV 332 (362)
Q Consensus 261 ~ni~i~n~~~~~~~gi~igs~g~~~~~~~v~ni~i~n~~i~~~~~gi~i~~~~g~~g~i~ni~~~ni~~~~~ 332 (362)
.|-.|+|....+++|+.+|--| ....++||++++|. ..|+.++.. |=+|.||++.++
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG---~~~yvsni~~~d~~----g~G~~~~~~--------~~~ftNitvId~ 367 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDG---KGGYVSNITVQDCA----GAGIFIRGT--------NKVFTNITVIDT 367 (549)
T ss_dssp ---EEEEEEEES-SSESCEEEC---CS-EEEEEEEES-S----SESEEEECC--------S-EEEEEEEES-
T ss_pred hhhhhhhhheeccceeeeeecC---CCceEeeEEeeccc----CCceEEeec--------CCceeeeEEEec
Confidence 5667777777777777766533 33445555544432 346665542 335666666655
No 94
>PLN02671 pectinesterase
Probab=90.35 E-value=11 Score=36.21 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=29.8
Q ss_pred chHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEe
Q 017991 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISG 119 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G 119 (362)
-|-..||+||+++.+.. ..-+|+|.+| +|.-+ +.+ .. +.+++|+++|
T Consensus 69 Gdf~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~Ek-V~I~~~--k~~Itl~G~g 117 (359)
T PLN02671 69 GDSLTVQGAVDMVPDYNSQRVKIYILPG-IYREK-VLVPKS--KPYISFIGNE 117 (359)
T ss_pred CCccCHHHHHHhchhcCCccEEEEEeCc-eEEEE-EEECCC--CCeEEEEecC
Confidence 35778999999654422 2358999999 99643 222 11 4566666543
No 95
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=87.72 E-value=26 Score=35.35 Aligned_cols=114 Identities=11% Similarity=0.034 Sum_probs=76.5
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|++.........+.+. .+.+..+.+|.|...-|.+....+ .-.++||.+++.-.+-+|.
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~----- 338 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGN----- 338 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEecc-----
Confidence 34567888999999886543333444442 357999999999988888877663 3488999998877777776
Q ss_pred CcccEEeEEEEcEEEeCCce--e--EEEEeeCCC--CceEEeEEEEeEEEecCC
Q 017991 286 SSVRIHDIMVYGALISNTQN--G--VRIKTWQGG--SGSATNIQFLDVLMKNVS 333 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~~--g--i~i~~~~g~--~g~i~ni~~~ni~~~~~~ 333 (362)
-...|+||++.-... | -.|. .+++ +..-.++.|.|.++....
T Consensus 339 -----a~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 339 -----AAAVFQNCYLFLRRPHGKSYNVIL-ANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred -----cceeecccEEEEecCCCCCceEEE-ecCCCCCCCCceEEEEeeEEecCC
Confidence 345788888853211 1 1232 2222 234468999999998754
No 96
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=80.60 E-value=6.8 Score=33.62 Aligned_cols=91 Identities=9% Similarity=0.039 Sum_probs=55.4
Q ss_pred cCEEEEeeEEecC-CccEEEc--------CCceeEEEEeeEEcCCc---e--eEEeecCCCCCcccEEeEEEEcEEEeCC
Q 017991 238 RGVEVKNSIVGTG-DDCISIV--------GNSSLIRIRNFACGPGH---G--ISIGSLGKSNSSVRIHDIMVYGALISNT 303 (362)
Q Consensus 238 ~nv~I~n~~i~~g-dD~i~i~--------s~~~ni~i~n~~~~~~~---g--i~igs~g~~~~~~~v~ni~i~n~~i~~~ 303 (362)
.+|.|-|..|.+. --+|-+. +..+||+|.++.|..+. . ..-|- ...++.|..|||++|.+.
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGI-----v~sGF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGI-----VTSGFYNTLIENNVFDGV 76 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeE-----EeccccccEEEeeeeccc
Confidence 4788888888763 2233332 23579999999997531 2 11121 234678999999999987
Q ss_pred ce-eEEEEeeCC---CCceEEeEEEEeEEEecCC
Q 017991 304 QN-GVRIKTWQG---GSGSATNIQFLDVLMKNVS 333 (362)
Q Consensus 304 ~~-gi~i~~~~g---~~g~i~ni~~~ni~~~~~~ 333 (362)
.. |+.-+...+ ..|.---.++||+.|.+..
T Consensus 77 y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~ 110 (198)
T PF08480_consen 77 YHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTR 110 (198)
T ss_pred ccceEEEEecccccCCCCCceEEEEEcceEeeee
Confidence 54 454432221 1233334888888888764
No 97
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=73.88 E-value=90 Score=30.70 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCcEEEeeeeeccCCCCCCceEEEE
Q 017991 73 AFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLEIS 118 (362)
Q Consensus 73 aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i~~l~l~~~~~s~v~l~~~ 118 (362)
-|.+|+.........+.+++-+| +|....|.+ .|++.+.++
T Consensus 34 ~iEea~~~l~e~~~e~LIFlH~G-~~e~~~i~I----~sdvqiiGA 74 (625)
T KOG1777|consen 34 HIEEALRFLDENDEEKLIFLHEG-THETETIRI----TSDVQIIGA 74 (625)
T ss_pred hHHHHhhhcccccccceEEEEec-cccceEEEE----cCCeeEecc
Confidence 34555543333344678889999 999888888 677776653
No 98
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=72.94 E-value=50 Score=33.91 Aligned_cols=138 Identities=8% Similarity=0.011 Sum_probs=91.5
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .+....+.+|.|...-|.+..+++ .-.++||.+.+.-.+-+|.
T Consensus 341 ~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~----- 413 (565)
T PLN02468 341 AVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQ--RQFYRECNIYGTVDFIFGN----- 413 (565)
T ss_pred eEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCC--ceEEEeeEEecccceeecc-----
Confidence 44578899999999986543334444443 468999999999998888877663 4579999999887888877
Q ss_pred CcccEEeEEEEcEEEeCCc----eeEEEEeeCCC--CceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeee
Q 017991 286 SSVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYAT 359 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~----~gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~~~~~~ 359 (362)
-.+.|+||++.-.. ..-.|.. +++ +..-.++.|.|+++......-....+.+-+++ ++.+-|||+
T Consensus 414 -----a~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~---~~sr~v~~~ 484 (565)
T PLN02468 414 -----SAVVFQNCNILPRRPMKGQQNTITA-QGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWK---NYSTTVIMH 484 (565)
T ss_pred -----ceEEEeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEccEEecCCCccccceeeecCCC---CCceEEEEe
Confidence 46788888885321 1122332 332 34556899999999975421111122233333 466778887
Q ss_pred e
Q 017991 360 C 360 (362)
Q Consensus 360 ~ 360 (362)
|
T Consensus 485 s 485 (565)
T PLN02468 485 S 485 (565)
T ss_pred c
Confidence 7
No 99
>PLN02634 probable pectinesterase
Probab=71.32 E-value=92 Score=29.98 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHcCC-CCCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEe
Q 017991 69 DDTEAFANAWKKACSF-PARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISG 119 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~-~gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G 119 (362)
-|-..||+||+++.+. ....+|+|-+| +|.-+ +.+ +. +.+++|+++|
T Consensus 66 Gdf~TIQaAIda~P~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~--k~~ItL~G~g 114 (359)
T PLN02634 66 GDFRSVQDAVDSVPKNNTMSVTIKINAG-FYREK-VVVPAT--KPYITFQGAG 114 (359)
T ss_pred CCccCHHHHHhhCcccCCccEEEEEeCc-eEEEE-EEEcCC--CCeEEEEecC
Confidence 3577899999965432 22357899999 99654 222 11 5567776664
No 100
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=70.23 E-value=78 Score=32.12 Aligned_cols=135 Identities=10% Similarity=0.020 Sum_probs=89.5
Q ss_pred eEEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCC
Q 017991 205 IAFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGK 283 (362)
Q Consensus 205 i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~ 283 (362)
......+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.+++|++++.-.+-+|.
T Consensus 307 Tv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~--- 381 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSK--RQFYRETDITGTVDFIFGN--- 381 (529)
T ss_pred EEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCC--CEEEEeeEEccccceeccc---
Confidence 3455678899999999986543333444442 357999999999998888877663 4588999999887777776
Q ss_pred CCCcccEEeEEEEcEEEeCCce---eEEEEeeCCC--CceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceee
Q 017991 284 SNSSVRIHDIMVYGALISNTQN---GVRIKTWQGG--SGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYA 358 (362)
Q Consensus 284 ~~~~~~v~ni~i~n~~i~~~~~---gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~~~~~ 358 (362)
-...|+||++.-... .-.|. .+++ +..-.++.|.|+++.... ...+ +-.+ .++.+.||+
T Consensus 382 -------a~avFq~C~I~~~~~~~~~g~IT-Aq~R~~~~~~~Gfvf~~C~it~~~-~~yL----GRPW---~~ysrvVf~ 445 (529)
T PLN02170 382 -------SAVVFQSCNIAARKPSGDRNYVT-AQGRSDPNQNTGISIHNCRITAES-MTYL----GRPW---KEYSRTVVM 445 (529)
T ss_pred -------ceEEEeccEEEEecCCCCceEEE-ecCCCCCCCCceEEEEeeEEecCC-ceee----eCCC---CCCceEEEE
Confidence 356888888864321 12332 2332 234568999999998854 2222 2222 235667777
Q ss_pred ee
Q 017991 359 TC 360 (362)
Q Consensus 359 ~~ 360 (362)
+|
T Consensus 446 ~t 447 (529)
T PLN02170 446 QS 447 (529)
T ss_pred ec
Confidence 76
No 101
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=70.11 E-value=83 Score=32.22 Aligned_cols=139 Identities=10% Similarity=0.072 Sum_probs=92.9
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .++.+.+.||.|...-|.+...++ .-.+++|.+.++-.+-+|.
T Consensus 326 ~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~----- 398 (553)
T PLN02708 326 GVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGN----- 398 (553)
T ss_pred EEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecC-----
Confidence 45678999999999987643334455543 368999999999998888877763 4589999999888888877
Q ss_pred CcccEEeEEEEcEEEeCC------cee--EEEEeeCCC--CceEEeEEEEeEEEecCCccE-------EEEeee-CCCCC
Q 017991 286 SSVRIHDIMVYGALISNT------QNG--VRIKTWQGG--SGSATNIQFLDVLMKNVSNPI-------IIDQYY-CDSPV 347 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~------~~g--i~i~~~~g~--~g~i~ni~~~ni~~~~~~~~i-------~i~~~y-~~~~~ 347 (362)
-...|+||++.-. ..| -.| +.+++ +..-.++.|.|+++.....-+ .....| +-.+
T Consensus 399 -----a~avfq~c~i~~~~~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~~~~~yLGRPW- 471 (553)
T PLN02708 399 -----SAAVFQDCAILIAPRQLKPEKGENNAV-TAHGRTDPAQSTGFVFQNCLINGTEEYMKLYRSNPKVHKNFLGRPW- 471 (553)
T ss_pred -----ceEEEEccEEEEeccccCCCCCCceEE-EeCCCCCCCCCceEEEEccEEecCCcccccccccccccceeeecCC-
Confidence 4678999998621 111 233 32332 244568999999998753210 011223 3333
Q ss_pred CCCCCCCceeeeec
Q 017991 348 PCANQVCNPYATCI 361 (362)
Q Consensus 348 ~c~~~~~~~~~~~~ 361 (362)
.++-+-|||+|-
T Consensus 472 --~~ysr~V~~~s~ 483 (553)
T PLN02708 472 --KEYSRTVFIGCN 483 (553)
T ss_pred --CCcceEEEEecc
Confidence 346778888873
No 102
>PLN02176 putative pectinesterase
Probab=67.50 E-value=1.1e+02 Score=29.35 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=19.5
Q ss_pred cCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEee
Q 017991 238 RGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGS 280 (362)
Q Consensus 238 ~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs 280 (362)
+...+.+|.|...-|.+.... ..-.++||.+++.-.+-+|.
T Consensus 156 Dr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~ 196 (340)
T PLN02176 156 DKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGY 196 (340)
T ss_pred ccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecC
Confidence 455555555555444444332 23355555555444444443
No 103
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=67.49 E-value=69 Score=33.53 Aligned_cols=138 Identities=9% Similarity=0.017 Sum_probs=91.8
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|++.........+.+. .++...+.+|.|...-|.+...++ .-.+++|.+++.-.+-+|.
T Consensus 333 ~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----- 405 (670)
T PLN02217 333 AIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSH--RQFYRDCTISGTIDFLFGD----- 405 (670)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCC--cEEEEeCEEEEeccEEecC-----
Confidence 34578899999999986543344555553 368999999999988888876653 4599999998877777776
Q ss_pred CcccEEeEEEEcEEEeCCc----eeEEEEeeCCC--CceEEeEEEEeEEEecCCc--cEE-EEeee-CCCCCCCCCCCCc
Q 017991 286 SSVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNVSN--PII-IDQYY-CDSPVPCANQVCN 355 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~----~gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i~-i~~~y-~~~~~~c~~~~~~ 355 (362)
-...|+||++.-.. ..-.|. .+++ +..-.++.|.|+++..... |.. -...| +-. =.++-+-
T Consensus 406 -----a~avfq~C~I~~r~~~~~~~~~IT-Aqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRP---W~~ysrv 476 (670)
T PLN02217 406 -----AAAVFQNCTLLVRKPLLNQACPIT-AHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRP---WKEYSRT 476 (670)
T ss_pred -----ceEEEEccEEEEccCCCCCceeEe-cCCCCCCCCCceEEEEeeEEecCccccccccccceeeccC---CCCCceE
Confidence 35688888886421 122333 2332 2345689999999998642 111 11223 323 3346778
Q ss_pred eeeee
Q 017991 356 PYATC 360 (362)
Q Consensus 356 ~~~~~ 360 (362)
|||+|
T Consensus 477 Vf~~t 481 (670)
T PLN02217 477 IIMNT 481 (670)
T ss_pred EEEec
Confidence 88887
No 104
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=66.26 E-value=89 Score=32.33 Aligned_cols=138 Identities=11% Similarity=0.027 Sum_probs=90.5
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .+....+.+|.|...-|.+...++ .-.++||++++.-.+-+|.
T Consensus 368 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----- 440 (596)
T PLN02745 368 VALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTH--RQFYRSCVITGTIDFIFGD----- 440 (596)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCC--cEEEEeeEEEeeccEEecc-----
Confidence 44678899999999986543333444443 368999999999998888876653 4699999999887777776
Q ss_pred CcccEEeEEEEcEEEeCCc----eeEEEEeeCCC--CceEEeEEEEeEEEecCCc--cEE--EEeeeCCCCCCCCCCCCc
Q 017991 286 SSVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNVSN--PII--IDQYYCDSPVPCANQVCN 355 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~----~gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i~--i~~~y~~~~~~c~~~~~~ 355 (362)
-...|+||++.-.. ..-.|. .+++ +..-.++.|.|+++..... |.. ...+.+-.+ .++.+.
T Consensus 441 -----a~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW---~~ysrv 511 (596)
T PLN02745 441 -----AAAIFQNCLIFVRKPLPNQQNTVT-AQGRVDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPW---KEFSRT 511 (596)
T ss_pred -----eeEEEEecEEEEecCCCCCCceEE-ecCCCCCCCCceEEEEeeEEecCccccccccccceeccCCC---CCCccE
Confidence 46788888886321 011232 2332 2345689999999987542 211 111223333 357778
Q ss_pred eeeee
Q 017991 356 PYATC 360 (362)
Q Consensus 356 ~~~~~ 360 (362)
|||+|
T Consensus 512 v~~~s 516 (596)
T PLN02745 512 IVMES 516 (596)
T ss_pred EEEec
Confidence 88877
No 105
>PLN02682 pectinesterase family protein
Probab=65.13 E-value=1.4e+02 Score=28.94 Aligned_cols=112 Identities=9% Similarity=0.044 Sum_probs=75.2
Q ss_pred EeceeeEEEEeEEEECCCC-----CCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEee
Q 017991 207 FTNCLRVVISNLEVIAPAE-----SPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGS 280 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~-----~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs 280 (362)
....+++..+|++|.+... ......+.+. .+++..+.+|.|...-|.+.... ..-.++||.+++.-.+-+|.
T Consensus 159 ~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~ 236 (369)
T PLN02682 159 AVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGN 236 (369)
T ss_pred EEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecC
Confidence 3456788899999988542 1122233332 35899999999999888887655 35699999999887777776
Q ss_pred cCCCCCcccEEeEEEEcEEEeCCc--eeEEEEeeCCC--CceEEeEEEEeEEEecC
Q 017991 281 LGKSNSSVRIHDIMVYGALISNTQ--NGVRIKTWQGG--SGSATNIQFLDVLMKNV 332 (362)
Q Consensus 281 ~g~~~~~~~v~ni~i~n~~i~~~~--~gi~i~~~~g~--~g~i~ni~~~ni~~~~~ 332 (362)
-...|++|++.-.. .| .|.. +++ ...-.+..|.|+++...
T Consensus 237 ----------g~a~Fe~C~I~s~~~~~G-~ITA-~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 237 ----------GLSLYEGCHLHAIARNFG-ALTA-QKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred ----------ceEEEEccEEEEecCCCe-EEec-CCCCCCCCCceEEEEeeEecCC
Confidence 35688888886422 23 2332 221 12345889999999874
No 106
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=64.06 E-value=78 Score=32.31 Aligned_cols=138 Identities=10% Similarity=0.034 Sum_probs=89.5
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.++||++++.-.+-+|.
T Consensus 308 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----- 380 (539)
T PLN02995 308 GIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQ--RQFYRECYIYGTVDFIFGN----- 380 (539)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCC--ceEEEeeEEeeccceEecc-----
Confidence 34678899999999986543334455543 358999999999998888876653 4599999999887777776
Q ss_pred CcccEEeEEEEcEEEeCCc--e--eEEEEeeCCC--CceEEeEEEEeEEEecCCc--cEE-EEeee-CCCCCCCCCCCCc
Q 017991 286 SSVRIHDIMVYGALISNTQ--N--GVRIKTWQGG--SGSATNIQFLDVLMKNVSN--PII-IDQYY-CDSPVPCANQVCN 355 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~--~--gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i~-i~~~y-~~~~~~c~~~~~~ 355 (362)
-...|+||++.-.. . .-.|. .+++ +..-.++.|.|+++..... |.. -...| +-.+ .++-+-
T Consensus 381 -----a~avf~~C~i~~~~~~~~~~~~iT-A~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW---~~ysrv 451 (539)
T PLN02995 381 -----AAAVFQNCIILPRRPLKGQANVIT-AQGRADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPW---MKFSRT 451 (539)
T ss_pred -----cceEEeccEEEEecCCCCCcceEe-cCCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCC---CCCcce
Confidence 35678888875421 1 12333 2332 2345689999999998532 110 11223 3333 346667
Q ss_pred eeeee
Q 017991 356 PYATC 360 (362)
Q Consensus 356 ~~~~~ 360 (362)
||+.|
T Consensus 452 v~~~t 456 (539)
T PLN02995 452 VVLQT 456 (539)
T ss_pred EEEec
Confidence 78776
No 107
>PLN02304 probable pectinesterase
Probab=63.30 E-value=1.1e+02 Score=29.60 Aligned_cols=112 Identities=9% Similarity=0.074 Sum_probs=72.1
Q ss_pred eceeeEEEEeEEEECCCC-----CCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeec
Q 017991 208 TNCLRVVISNLEVIAPAE-----SPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSL 281 (362)
Q Consensus 208 ~~~~nv~i~n~~I~~~~~-----~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~ 281 (362)
...+++..+|++|.+... ......+.+. .++...+.+|.|...-|.+....+ .-.++||.+++.-.+-+|.
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~g--R~Yf~~CyIeG~VDFIFG~- 235 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDRG--RHYFKDCYIQGSIDFIFGD- 235 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCCC--CEEEEeeEEcccccEEecc-
Confidence 346778888888887531 1122334332 368999999999988888765543 5689999998877777776
Q ss_pred CCCCCcccEEeEEEEcEEEeCCcee---------EEEEeeCC--CCceEEeEEEEeEEEecC
Q 017991 282 GKSNSSVRIHDIMVYGALISNTQNG---------VRIKTWQG--GSGSATNIQFLDVLMKNV 332 (362)
Q Consensus 282 g~~~~~~~v~ni~i~n~~i~~~~~g---------i~i~~~~g--~~g~i~ni~~~ni~~~~~ 332 (362)
-...|+||++.-.... -.|.. ++ ....-.+..|.|+++...
T Consensus 236 ---------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA-~~Rt~~~~~~GfvF~~C~itg~ 287 (379)
T PLN02304 236 ---------ARSLYENCRLISMANPVPPGSKSINGAVTA-HGRTSKDENTGFSFVNCTIGGT 287 (379)
T ss_pred ---------ceEEEEccEEEEecCCcccccccCceEEEe-cCCCCCCCCceEEEECCEEccC
Confidence 3557888887642111 12322 22 123445788999998764
No 108
>PLN02916 pectinesterase family protein
Probab=62.46 E-value=1.7e+02 Score=29.53 Aligned_cols=139 Identities=9% Similarity=-0.033 Sum_probs=91.4
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.+++|++++.-.+-+|.
T Consensus 273 ~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----- 345 (502)
T PLN02916 273 GVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGD----- 345 (502)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccC-----
Confidence 44567888999999986543344445443 358999999999998888887763 4588999999887787776
Q ss_pred CcccEEeEEEEcEEEeCCc----eeEEEEeeCCC--CceEEeEEEEeEEEecCCccEEE---Eeee-CCCCCCCCCCCCc
Q 017991 286 SSVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNVSNPIII---DQYY-CDSPVPCANQVCN 355 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~----~gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~~i~i---~~~y-~~~~~~c~~~~~~ 355 (362)
-...|+||++.-.. ..-.|.. +++ +..-.++.|.|+++......... ...| +-.. .++-+-
T Consensus 346 -----a~avFq~C~I~~~~~~~~~~g~ITA-q~r~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRPW---~~ysrv 416 (502)
T PLN02916 346 -----AAVVFQNCDIFVRRPMDHQGNMITA-QGRDDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRPW---KKYSRT 416 (502)
T ss_pred -----ceEEEecCEEEEecCCCCCcceEEe-cCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCC---CCCceE
Confidence 46688888885321 1223332 332 23456899999999875421111 1122 3233 446788
Q ss_pred eeeeec
Q 017991 356 PYATCI 361 (362)
Q Consensus 356 ~~~~~~ 361 (362)
||++|.
T Consensus 417 Vf~~t~ 422 (502)
T PLN02916 417 VFLKTD 422 (502)
T ss_pred EEEecc
Confidence 888873
No 109
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=62.38 E-value=8.2 Score=29.53 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=3.0
Q ss_pred Ccccch
Q 017991 1 MKQLKF 6 (362)
Q Consensus 1 m~~~~~ 6 (362)
|.++.+
T Consensus 1 MaSK~~ 6 (95)
T PF07172_consen 1 MASKAF 6 (95)
T ss_pred CchhHH
Confidence 774333
No 110
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=62.12 E-value=1.5e+02 Score=30.11 Aligned_cols=139 Identities=8% Similarity=0.042 Sum_probs=90.1
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCC
Q 017991 206 AFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (362)
Q Consensus 206 ~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 284 (362)
.....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.+++|++++.-.+-+|.
T Consensus 300 ~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~---- 373 (530)
T PLN02933 300 VGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGN---- 373 (530)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccC----
Confidence 345678899999999986543344555543 368999999999998888877663 3499999999887787776
Q ss_pred CCcccEEeEEEEcEEEeCCc----eeEEEEeeCCC--CceEEeEEEEeEEEecCCc--cEE-EEeee-CCCCCCCCCCCC
Q 017991 285 NSSVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNVSN--PII-IDQYY-CDSPVPCANQVC 354 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~----~gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i~-i~~~y-~~~~~~c~~~~~ 354 (362)
-...|+||.+.-.. ..-.|.. +++ ...-.++.|.|+++..... |.. -...| +-.+ .++-+
T Consensus 374 ------a~avFq~C~i~~~~~~~~~~~~iTA-q~r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW---~~ysr 443 (530)
T PLN02933 374 ------AAVVFQNCSLYARKPNPNHKIAFTA-QSRNQSDQPTGISIISSRILAAPDLIPVKENFKAYLGRPW---RKYSR 443 (530)
T ss_pred ------ceEEEeccEEEEeccCCCCceEEEe-cCCCCCCCCceEEEEeeEEecCCcccccccccceEeccCC---CCCce
Confidence 34678888885321 1123332 332 2344589999999987532 111 01222 3333 34667
Q ss_pred ceeeee
Q 017991 355 NPYATC 360 (362)
Q Consensus 355 ~~~~~~ 360 (362)
-||+.|
T Consensus 444 vVf~~s 449 (530)
T PLN02933 444 TVIIKS 449 (530)
T ss_pred EEEEec
Confidence 788876
No 111
>PLN02665 pectinesterase family protein
Probab=62.07 E-value=1.4e+02 Score=28.95 Aligned_cols=202 Identities=13% Similarity=0.027 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEe---E-EECCCCCCCcCCCCccccEEEec
Q 017991 70 DTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISG---T-IVAPKDPDVWKGLNRRRWLYFNR 143 (362)
Q Consensus 70 dt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G---~-i~~~~~~~~~~~~~~~~~i~~~~ 143 (362)
|-..||+||+++.... ..-+|+|.+| +|.-+ +.+ +. +.+++|++++ + |........+. .....-+. ..
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~G-vY~Ek-V~Ip~~--kp~Itl~G~~~~~tiIt~~~~a~~~g-T~~SaTv~-v~ 152 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPG-EYNEK-ITIDRS--KPFVTLYGSPGAMPTLTFDGTAAKYG-TVYSATLI-VE 152 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCc-EEEEE-EEecCC--CCEEEEEecCCCCCEEEECCccCCCC-CcceEEEE-EE
Confidence 5778999999654322 2347889999 99744 333 11 5677777764 2 22211111110 00011111 12
Q ss_pred eeeEEEEeccEEecCCCeeeecccccCCCCCCCCCCeEEEEEeecceEEEceEEeeCCCceeEEeceeeEEEEeEEEECC
Q 017991 144 VNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLRVVNSQQMHIAFTNCLRVVISNLEVIAP 223 (362)
Q Consensus 144 ~~ni~I~G~G~idG~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~nv~i~n~~I~~~ 223 (362)
.+++..++.. |. +... ............++++. .....+.++.|... +..+.. +...--+++|.|...
T Consensus 153 a~~F~a~nit-f~-------Nta~-~~~~~~~g~QAVAl~v~-gDka~f~~C~f~G~-QDTL~~-~~gr~yf~~CyIeG~ 220 (366)
T PLN02665 153 SDYFMAANII-IK-------NSAP-RPDGKRKGAQAVAMRIS-GDKAAFYNCRFIGF-QDTLCD-DKGRHFFKDCYIEGT 220 (366)
T ss_pred CCCeEEEeeE-EE-------eCCC-CcCCCCCCcceEEEEEc-CCcEEEEcceeccc-cceeEe-CCCCEEEEeeEEeec
Confidence 2445544411 11 1000 00000001123344433 56777777777743 333322 223455778888873
Q ss_pred CCCCCCCeeee-cCccCEEEEeeEEecCCcc----EEEcC-----CceeEEEEeeEEcCCc-eeEEeecCCCCCcccEEe
Q 017991 224 AESPNTDGIHI-SASRGVEVKNSIVGTGDDC----ISIVG-----NSSLIRIRNFACGPGH-GISIGSLGKSNSSVRIHD 292 (362)
Q Consensus 224 ~~~~~~DGI~~-~~s~nv~I~n~~i~~gdD~----i~i~s-----~~~ni~i~n~~~~~~~-gi~igs~g~~~~~~~v~n 292 (362)
+|+ .+.-...+++|+|..-.++ |+-.+ ......+.||++.+.. .+.+|- .......
T Consensus 221 --------VDFIFG~g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGR-----pW~~ysr 287 (366)
T PLN02665 221 --------VDFIFGSGKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGR-----AWMSRPR 287 (366)
T ss_pred --------cceeccccceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecC-----CCCCcce
Confidence 332 2334677788877763332 22221 1245677888776533 244432 2223456
Q ss_pred EEEEcEEEeC
Q 017991 293 IMVYGALISN 302 (362)
Q Consensus 293 i~i~n~~i~~ 302 (362)
+.|.++.|.+
T Consensus 288 vVf~~t~m~~ 297 (366)
T PLN02665 288 VVFAYTEMSS 297 (366)
T ss_pred EEEEccccCC
Confidence 7777777654
No 112
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=60.82 E-value=9 Score=20.42 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=12.0
Q ss_pred eEEEEcEEEeCCce-eEEEE
Q 017991 292 DIMVYGALISNTQN-GVRIK 310 (362)
Q Consensus 292 ni~i~n~~i~~~~~-gi~i~ 310 (362)
+++|+++++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 56667777766655 66654
No 113
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=59.49 E-value=1.5e+02 Score=30.06 Aligned_cols=138 Identities=9% Similarity=-0.005 Sum_probs=90.2
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.++||++++.-.+-+|.
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----- 361 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITGTVDFIFGD----- 361 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEeecccEEecC-----
Confidence 45678899999999986543344455543 357999999999998888877763 3488999999887788876
Q ss_pred CcccEEeEEEEcEEEeCCc----eeEEEEeeCCC--CceEEeEEEEeEEEecCCc--cE-EEEeee-CCCCCCCCCCCCc
Q 017991 286 SSVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNVSN--PI-IIDQYY-CDSPVPCANQVCN 355 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~----~gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i-~i~~~y-~~~~~~c~~~~~~ 355 (362)
-...|+||++.-.. ..-.|.. +++ +..-.++.|.|+++..... |. .-...| +-.+ .++-+-
T Consensus 362 -----a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW---~~ysrv 432 (520)
T PLN02201 362 -----ATAVFQNCQILAKKGLPNQKNTITA-QGRKDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPW---KLYSRT 432 (520)
T ss_pred -----ceEEEEccEEEEecCCCCCCceEEe-cCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCC---CCCceE
Confidence 35688888886421 1122332 332 2345689999999987432 11 001122 2233 346777
Q ss_pred eeeee
Q 017991 356 PYATC 360 (362)
Q Consensus 356 ~~~~~ 360 (362)
|||+|
T Consensus 433 v~~~t 437 (520)
T PLN02201 433 VFMQN 437 (520)
T ss_pred EEEec
Confidence 88877
No 114
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=59.07 E-value=1.3e+02 Score=30.79 Aligned_cols=134 Identities=10% Similarity=0.051 Sum_probs=89.4
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCC
Q 017991 206 AFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (362)
Q Consensus 206 ~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 284 (362)
.....+++..+|++|.+.........+.+. .+++..+.+|.|...-|.+...++ .-.++||++++.-.+-+|.
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~--rqyy~~C~I~GtVDFIFG~---- 387 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSL--RQFYRECEIYGTIDFIFGN---- 387 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCC--ceEEEeeEEecccceEccC----
Confidence 455788899999999986543334444442 368999999999998888877663 4599999999887788877
Q ss_pred CCcccEEeEEEEcEEEeCCce----eEEEEeeCCC--CceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceee
Q 017991 285 NSSVRIHDIMVYGALISNTQN----GVRIKTWQGG--SGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPYA 358 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~~----gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~~~~~ 358 (362)
-...|+||++.-... .-.|.. +++ +..-.++.|.|.++.... +..+. -.+ .++.+-|||
T Consensus 388 ------a~avfq~C~i~~r~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~~-~~yLG----RPW---~~~sr~v~~ 452 (537)
T PLN02506 388 ------GAAVLQNCKIYTRVPLPLQKVTITA-QGRKSPHQSTGFSIQDSYVLATQ-PTYLG----RPW---KQYSRTVFM 452 (537)
T ss_pred ------ceeEEeccEEEEccCCCCCCceEEc-cCCCCCCCCcEEEEEcCEEccCC-ceEEe----cCC---CCCceEEEE
Confidence 356888888864211 123332 332 223467899999998643 22222 222 346677777
Q ss_pred ee
Q 017991 359 TC 360 (362)
Q Consensus 359 ~~ 360 (362)
+|
T Consensus 453 ~t 454 (537)
T PLN02506 453 NT 454 (537)
T ss_pred ec
Confidence 76
No 115
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=58.66 E-value=1.1e+02 Score=31.40 Aligned_cols=115 Identities=10% Similarity=0.058 Sum_probs=79.7
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCC
Q 017991 206 AFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (362)
Q Consensus 206 ~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 284 (362)
.....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.+++|.+++.-.+-+|.
T Consensus 312 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~---- 385 (541)
T PLN02416 312 LAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSF--RQFYRECDIYGTIDYIFGN---- 385 (541)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCC--ceEEEeeEEeeccceeecc----
Confidence 344678999999999986544344444443 358999999999998888876653 4599999999887777776
Q ss_pred CCcccEEeEEEEcEEEeCCce--e--EEEEeeCCC--CceEEeEEEEeEEEecCC
Q 017991 285 NSSVRIHDIMVYGALISNTQN--G--VRIKTWQGG--SGSATNIQFLDVLMKNVS 333 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~~--g--i~i~~~~g~--~g~i~ni~~~ni~~~~~~ 333 (362)
-...|+||++.-... | -.| +.+++ +..-.++.|.|.++....
T Consensus 386 ------a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~~ 433 (541)
T PLN02416 386 ------AAVVFQACNIVSKMPMPGQFTVI-TAQSRDTPDEDTGISIQNCSILATE 433 (541)
T ss_pred ------ceEEEeccEEEEecCCCCCceEE-ECCCCCCCCCCCEEEEEeeEEecCC
Confidence 466888888854211 1 123 22332 233458999999998653
No 116
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=57.15 E-value=1.9e+02 Score=29.84 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=90.5
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.+++|.+++.-.+-+|.
T Consensus 343 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----- 415 (572)
T PLN02990 343 AINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSH--RQFFRDCTVSGTVDFIFGD----- 415 (572)
T ss_pred EEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCC--cEEEEeeEEecccceEccC-----
Confidence 34678899999999986543344555543 367999999999988888877663 4588999999887777776
Q ss_pred CcccEEeEEEEcEEEeCCc--ee--EEEEeeCCC--CceEEeEEEEeEEEecCCc--cEE-EEeee-CCCCCCCCCCCCc
Q 017991 286 SSVRIHDIMVYGALISNTQ--NG--VRIKTWQGG--SGSATNIQFLDVLMKNVSN--PII-IDQYY-CDSPVPCANQVCN 355 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~--~g--i~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i~-i~~~y-~~~~~~c~~~~~~ 355 (362)
-...|+||++.-.. .| -.|. .+++ +..-.++.|.|+++..... |.. ....| +-.+ .++-+-
T Consensus 416 -----a~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW---~~ysrv 486 (572)
T PLN02990 416 -----AKVVLQNCNIVVRKPMKGQSCMIT-AQGRSDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPW---KEFSRT 486 (572)
T ss_pred -----ceEEEEccEEEEecCCCCCceEEE-eCCCCCCCCCceEEEEeeEEecCccccccccccceEeecCC---CCCceE
Confidence 35688888885321 11 2333 2332 2345689999999988642 211 11122 3333 346677
Q ss_pred eeeee
Q 017991 356 PYATC 360 (362)
Q Consensus 356 ~~~~~ 360 (362)
|||.|
T Consensus 487 V~~~s 491 (572)
T PLN02990 487 IIMGT 491 (572)
T ss_pred EEEec
Confidence 88876
No 117
>PLN02314 pectinesterase
Probab=56.26 E-value=1.7e+02 Score=30.30 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=91.6
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCC
Q 017991 206 AFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (362)
Q Consensus 206 ~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 284 (362)
.....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.++||+++++-.+-+|.
T Consensus 360 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~---- 433 (586)
T PLN02314 360 FAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGN---- 433 (586)
T ss_pred EEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccC----
Confidence 345678899999999986543344445543 457899999999998888877763 3589999999887787776
Q ss_pred CCcccEEeEEEEcEEEeCCc-----eeEEEEeeCCC--CceEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCcee
Q 017991 285 NSSVRIHDIMVYGALISNTQ-----NGVRIKTWQGG--SGSATNIQFLDVLMKNVSNPIIIDQYYCDSPVPCANQVCNPY 357 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~-----~gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~~i~i~~~y~~~~~~c~~~~~~~~ 357 (362)
-...|+||.+.-.. .+ .| +.+++ +..-.++.|.|+++...... ....+-+-.+ .++.+-||
T Consensus 434 ------a~avf~~c~i~~~~~~~~~~~-~i-TA~~r~~~~~~~G~vf~~c~i~~~~~~-~~~~yLGRpW---~~ysr~v~ 501 (586)
T PLN02314 434 ------AAVVFQNCNIQPRQPLPNQFN-TI-TAQGKKDPNQNTGISIQRCTISAFGNL-TAPTYLGRPW---KDFSTTVI 501 (586)
T ss_pred ------ceeeeeccEEEEecCCCCCCc-eE-ecCCCCCCCCCCEEEEEeeEEecCCcc-cccccccCCC---CCCceEEE
Confidence 35688888885321 12 23 33332 34556899999999886421 1111223333 34667788
Q ss_pred eee
Q 017991 358 ATC 360 (362)
Q Consensus 358 ~~~ 360 (362)
|+|
T Consensus 502 ~~s 504 (586)
T PLN02314 502 MQS 504 (586)
T ss_pred Eec
Confidence 877
No 118
>PRK09752 adhesin; Provisional
Probab=55.78 E-value=3.4e+02 Score=30.48 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=27.3
Q ss_pred eEEEEeEEEECCCCCCCCCeeeecCcc-----CEEEEeeEEecCC----ccEEEcCCceeEEEEeeEEc
Q 017991 212 RVVISNLEVIAPAESPNTDGIHISASR-----GVEVKNSIVGTGD----DCISIVGNSSLIRIRNFACG 271 (362)
Q Consensus 212 nv~i~n~~I~~~~~~~~~DGI~~~~s~-----nv~I~n~~i~~gd----D~i~i~s~~~ni~i~n~~~~ 271 (362)
.+++.++.+.+..-..+.-.|...+.. .+.|.|+.|.+.. .+-+|.....++.|.||.|.
T Consensus 122 ~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~ng~vtIsnS~F~ 190 (1250)
T PRK09752 122 TLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFD 190 (1250)
T ss_pred eeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEccCcEEEEeeEEe
Confidence 355666666653221233345443321 2566666665431 22233332334555555554
No 119
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=54.52 E-value=2e+02 Score=29.53 Aligned_cols=139 Identities=9% Similarity=0.051 Sum_probs=91.5
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCC
Q 017991 206 AFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (362)
Q Consensus 206 ~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 284 (362)
.....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+..+++ .-.++||.+++.-.+-+|.
T Consensus 318 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~---- 391 (548)
T PLN02301 318 VAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTVDFIFGN---- 391 (548)
T ss_pred EEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC--cEEEEeeEEEeccceeccc----
Confidence 345678899999999986543334445443 358999999999998888877763 3499999999887777776
Q ss_pred CCcccEEeEEEEcEEEeCCce--e--EEEEeeCCC--CceEEeEEEEeEEEecCCc--cEE--EEeeeCCCCCCCCCCCC
Q 017991 285 NSSVRIHDIMVYGALISNTQN--G--VRIKTWQGG--SGSATNIQFLDVLMKNVSN--PII--IDQYYCDSPVPCANQVC 354 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~~--g--i~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i~--i~~~y~~~~~~c~~~~~ 354 (362)
-...|+||++.-... + -.|. .+++ +..-.++.|.|+++..... |.. ...+-+-.+ .++.+
T Consensus 392 ------a~avfq~c~i~~~~~~~~~~~~iT-Aqgr~~~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRPW---~~ysr 461 (548)
T PLN02301 392 ------AAVVFQNCKIVARKPMAGQKNMVT-AQGRTDPNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRPW---KEYSR 461 (548)
T ss_pred ------ceeEEeccEEEEecCCCCCCceEE-ecCCCCCCCCCEEEEEeeEEecCccccccccccceeeecCC---CCCce
Confidence 466888888854211 1 1232 2332 2345689999999987532 110 111223333 45778
Q ss_pred ceeeee
Q 017991 355 NPYATC 360 (362)
Q Consensus 355 ~~~~~~ 360 (362)
-|||+|
T Consensus 462 ~V~~~s 467 (548)
T PLN02301 462 TVVMQS 467 (548)
T ss_pred EEEEec
Confidence 888877
No 120
>PLN02497 probable pectinesterase
Probab=53.56 E-value=2.1e+02 Score=27.30 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHcCCC-CCcEEEEcCCcEEEeeeeec-cCCCCCCceEEEEe
Q 017991 69 DDTEAFANAWKKACSFP-ARTKIVFSAGYTFLIHPIDI-SGPCKSRLTLEISG 119 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~-gg~~v~~P~G~~Y~i~~l~l-~~~~~s~v~l~~~G 119 (362)
-|-..||+||+++.... ...+|+|-+| +|.-+ +.+ +. +.+++|+++|
T Consensus 42 Gdf~TIq~AIdavP~~~~~~~~I~Ik~G-~Y~Ek-V~Ip~~--k~~itl~G~g 90 (331)
T PLN02497 42 GNFTTIQSAIDSVPSNNKHWFCINVKAG-LYREK-VKIPYD--KPFIVLVGAG 90 (331)
T ss_pred CCccCHHHHHhhccccCCceEEEEEeCc-EEEEE-EEecCC--CCcEEEEecC
Confidence 35778999999654432 2246899999 99654 222 11 6677777765
No 121
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=53.17 E-value=2.5e+02 Score=29.04 Aligned_cols=139 Identities=10% Similarity=0.021 Sum_probs=91.2
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCC
Q 017991 206 AFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (362)
Q Consensus 206 ~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 284 (362)
.....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.++||++++.-.+-+|.
T Consensus 355 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~---- 428 (587)
T PLN02484 355 FAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSN--RQFFRECDIYGTVDFIFGN---- 428 (587)
T ss_pred EEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCC--cEEEEecEEEeccceeccc----
Confidence 345678899999999986543334455443 368999999999998888877663 4589999999887777776
Q ss_pred CCcccEEeEEEEcEEEeCCc----eeEEEEeeCCC--CceEEeEEEEeEEEecCCc--cE--EEEeeeCCCCCCCCCCCC
Q 017991 285 NSSVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNVSN--PI--IIDQYYCDSPVPCANQVC 354 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~----~gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i--~i~~~y~~~~~~c~~~~~ 354 (362)
-...|+||++.-.. ..-.|. .+++ +..-.++.|.|+++..... +. ....+.+-.+ .++.+
T Consensus 429 ------a~avfq~C~i~~~~~~~~~~~~IT-Aq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW---~~ysr 498 (587)
T PLN02484 429 ------AAVVLQNCSIYARKPMAQQKNTIT-AQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPW---KLYSR 498 (587)
T ss_pred ------ceeEEeccEEEEecCCCCCceEEE-ecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCCC---CCCce
Confidence 45688888886321 112333 2332 2345689999999987532 11 0111223333 34677
Q ss_pred ceeeee
Q 017991 355 NPYATC 360 (362)
Q Consensus 355 ~~~~~~ 360 (362)
-|||.|
T Consensus 499 vV~~~s 504 (587)
T PLN02484 499 TVYMMS 504 (587)
T ss_pred EEEEec
Confidence 788876
No 122
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=52.71 E-value=2.6e+02 Score=28.27 Aligned_cols=138 Identities=9% Similarity=-0.012 Sum_probs=91.4
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.+++|.+++.-.+-+|.
T Consensus 280 ~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~--RqyyrdC~I~GtVDFIFG~----- 352 (509)
T PLN02488 280 ASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRD--RQFYRECFITGTVDFICGN----- 352 (509)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCC--CEEEEeeEEeeccceEecc-----
Confidence 34567788899999886543344555553 368999999999998888876653 4599999999887777776
Q ss_pred CcccEEeEEEEcEEEeCCce----eEEEEeeCCC--CceEEeEEEEeEEEecCCc--cEE--EEeeeCCCCCCCCCCCCc
Q 017991 286 SSVRIHDIMVYGALISNTQN----GVRIKTWQGG--SGSATNIQFLDVLMKNVSN--PII--IDQYYCDSPVPCANQVCN 355 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~~----gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i~--i~~~y~~~~~~c~~~~~~ 355 (362)
-.+.|+||++.-... .-.|. .+++ +..-.++.|.|+++..... |.. ...+-+-++ .++-+-
T Consensus 353 -----a~avFq~C~I~sr~~~~~~~~~IT-Aq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW---~~ySrv 423 (509)
T PLN02488 353 -----AAAVFQFCQIVARQPMMGQSNVIT-AQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPW---RKYSTV 423 (509)
T ss_pred -----eEEEEEccEEEEecCCCCCCEEEE-eCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCC---CCCccE
Confidence 467899999864211 12343 3332 2345679999999988642 211 112223333 346677
Q ss_pred eeeee
Q 017991 356 PYATC 360 (362)
Q Consensus 356 ~~~~~ 360 (362)
|||.|
T Consensus 424 Vf~~s 428 (509)
T PLN02488 424 AVLQS 428 (509)
T ss_pred EEEec
Confidence 88876
No 123
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=51.77 E-value=54 Score=26.02 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=43.1
Q ss_pred EeecceEEEceEEeeC---CCceeEEeceeeEEEEeEEEECCCCCCCCCeeeecCccCEEEEe-eEEecCCccEE
Q 017991 185 HKCKNLKVQNLRVVNS---QQMHIAFTNCLRVVISNLEVIAPAESPNTDGIHISASRGVEVKN-SIVGTGDDCIS 255 (362)
Q Consensus 185 ~~~~nv~I~~v~i~n~---~~~~i~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n-~~i~~gdD~i~ 255 (362)
..+.+..+.+-.+.+. ..+++.+..+.+..+.+..+. .. .. .+|++++.+.+..+.+ ..+....|++.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 5566677777666665 377787776666656655555 11 12 6888888777777777 55555555553
No 124
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=49.74 E-value=1.8e+02 Score=30.16 Aligned_cols=138 Identities=11% Similarity=0.060 Sum_probs=91.5
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+..+++ .-.+++|.+.++-.+-+|.
T Consensus 358 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~----- 430 (587)
T PLN02313 358 AAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGN----- 430 (587)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccc-----
Confidence 44678899999999987543344444443 368999999999998888877763 3499999999887777776
Q ss_pred CcccEEeEEEEcEEEeCCc--ee--EEEEeeCCC--CceEEeEEEEeEEEecCCc--cEE--EEeeeCCCCCCCCCCCCc
Q 017991 286 SSVRIHDIMVYGALISNTQ--NG--VRIKTWQGG--SGSATNIQFLDVLMKNVSN--PII--IDQYYCDSPVPCANQVCN 355 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~--~g--i~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i~--i~~~y~~~~~~c~~~~~~ 355 (362)
-...|+||++.-.. .| -.| +.+++ +..-.++.|.|+++..... +.. ...+.+-. =.++.+-
T Consensus 431 -----a~avfq~c~i~~r~~~~~~~~~i-TAqgr~~~~~~tG~v~~~c~i~~~~~~~~~~~~~~~yLGRP---W~~ysr~ 501 (587)
T PLN02313 431 -----AAAVLQDCDINARRPNSGQKNMV-TAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRP---WKEYSRT 501 (587)
T ss_pred -----eeEEEEccEEEEecCCCCCcceE-EecCCCCCCCCceEEEEecEEecCCccccccccchhhccCC---CCCCccE
Confidence 46789999986421 11 123 33332 2345689999999987542 110 11122223 3456778
Q ss_pred eeeee
Q 017991 356 PYATC 360 (362)
Q Consensus 356 ~~~~~ 360 (362)
|||.|
T Consensus 502 v~~~s 506 (587)
T PLN02313 502 VIMQS 506 (587)
T ss_pred EEEec
Confidence 88887
No 125
>PRK09752 adhesin; Provisional
Probab=49.51 E-value=3.7e+02 Score=30.27 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=44.9
Q ss_pred eEEEEeEEEECCCCCCCCCeeeecCccCEEEEeeEEecC---CccEEEcCCc------eeEEEEeeEEcCC-----ceeE
Q 017991 212 RVVISNLEVIAPAESPNTDGIHISASRGVEVKNSIVGTG---DDCISIVGNS------SLIRIRNFACGPG-----HGIS 277 (362)
Q Consensus 212 nv~i~n~~I~~~~~~~~~DGI~~~~s~nv~I~n~~i~~g---dD~i~i~s~~------~ni~i~n~~~~~~-----~gi~ 277 (362)
+..+.++++.... .+.-.|.-.....+.|.+|.|.+. ..+-+|.... -.+.|.|+.|.+. .|=+
T Consensus 97 ~t~F~nNtasG~~--~sGGAIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGA 174 (1250)
T PRK09752 97 MTLFANNTVSGEY--NNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGA 174 (1250)
T ss_pred ceEeecceecCCc--CCccEEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCE
Confidence 4556666666421 133345444444689999999863 3344444321 2478888888653 2322
Q ss_pred EeecCCCCCcccEEeEEEEcEEE
Q 017991 278 IGSLGKSNSSVRIHDIMVYGALI 300 (362)
Q Consensus 278 igs~g~~~~~~~v~ni~i~n~~i 300 (362)
|.++ ...-.+.+..|.++.-
T Consensus 175 IYs~---ng~vtIsnS~F~nN~A 194 (1250)
T PRK09752 175 IYTI---NNDVYLSDVIFDNNQA 194 (1250)
T ss_pred EEEc---cCcEEEEeeEEeCCcc
Confidence 3332 1223556666666654
No 126
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=45.53 E-value=75 Score=30.02 Aligned_cols=82 Identities=11% Similarity=0.046 Sum_probs=49.3
Q ss_pred eeeEEEEeEEEECCCC----CCCCCeeee-cCccCEEEEeeEEecCCccEEEcCC-c---------eeEEEEeeEEcCCc
Q 017991 210 CLRVVISNLEVIAPAE----SPNTDGIHI-SASRGVEVKNSIVGTGDDCISIVGN-S---------SLIRIRNFACGPGH 274 (362)
Q Consensus 210 ~~nv~i~n~~I~~~~~----~~~~DGI~~-~~s~nv~I~n~~i~~gdD~i~i~s~-~---------~ni~i~n~~~~~~~ 274 (362)
-.++.++|++|.+..+ ..+.-.+.+ ..+..+.++||.+....|.+.++.. . -.-.++||.+++--
T Consensus 188 ~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~Gdv 267 (405)
T COG4677 188 NNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDV 267 (405)
T ss_pred cCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccc
Confidence 4455666667666321 112223333 1357899999999987787777653 1 12367788887655
Q ss_pred eeEEeecCCCCCcccEEeEEEEcEEEe
Q 017991 275 GISIGSLGKSNSSVRIHDIMVYGALIS 301 (362)
Q Consensus 275 gi~igs~g~~~~~~~v~ni~i~n~~i~ 301 (362)
.+-+|+ --..|.+|.|.
T Consensus 268 DfIfGs----------gtaVFd~c~i~ 284 (405)
T COG4677 268 DFIFGS----------GTAVFDNCEIQ 284 (405)
T ss_pred eEEecc----------ceEEeccceEE
Confidence 666666 23466666664
No 127
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=43.05 E-value=3.4e+02 Score=27.81 Aligned_cols=139 Identities=8% Similarity=0.016 Sum_probs=87.8
Q ss_pred EEeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCC
Q 017991 206 AFTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKS 284 (362)
Q Consensus 206 ~~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~ 284 (362)
.....+++..+|++|.+.........+.+. .+....+.+|.|...-|.+...++ .-.++||.+++.-.+-+|.
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~GtVDFIFG~---- 381 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYGTVDFIFGN---- 381 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEeeccceEeec----
Confidence 344568888899999886543344555543 357889999999988887776663 3588999998877777776
Q ss_pred CCcccEEeEEEEcEEEeCCc----eeEEEEeeCCC--CceEEeEEEEeEEEecCCc--cEE-EEeee-CCCCCCCCCCCC
Q 017991 285 NSSVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNVSN--PII-IDQYY-CDSPVPCANQVC 354 (362)
Q Consensus 285 ~~~~~v~ni~i~n~~i~~~~----~gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i~-i~~~y-~~~~~~c~~~~~ 354 (362)
-...|+||++.-.. ..-.|.. +++ +..-.++.|.|+++..... +.. -...| +-. =.++-+
T Consensus 382 ------a~avfq~c~i~~r~~~~~~~~~iTA-~~r~~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRp---W~~ysr 451 (538)
T PLN03043 382 ------AAAIFQNCNLYARKPMANQKNAFTA-QGRTDPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRP---WKPYSR 451 (538)
T ss_pred ------ceeeeeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEecEEecCCcccccccccceeccCC---CCCCce
Confidence 45688888885421 1112322 222 2344689999999987532 111 01123 323 334677
Q ss_pred ceeeee
Q 017991 355 NPYATC 360 (362)
Q Consensus 355 ~~~~~~ 360 (362)
-|||.|
T Consensus 452 ~v~~~s 457 (538)
T PLN03043 452 TVYMQS 457 (538)
T ss_pred EEEEec
Confidence 888877
No 128
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=39.93 E-value=4.1e+02 Score=27.37 Aligned_cols=138 Identities=9% Similarity=0.008 Sum_probs=86.8
Q ss_pred EeceeeEEEEeEEEECCCCCCCCCeeeec-CccCEEEEeeEEecCCccEEEcCCceeEEEEeeEEcCCceeEEeecCCCC
Q 017991 207 FTNCLRVVISNLEVIAPAESPNTDGIHIS-ASRGVEVKNSIVGTGDDCISIVGNSSLIRIRNFACGPGHGISIGSLGKSN 285 (362)
Q Consensus 207 ~~~~~nv~i~n~~I~~~~~~~~~DGI~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~ni~i~n~~~~~~~gi~igs~g~~~ 285 (362)
....+++..+|++|.+.........+.+. .++...+.+|.|...-|.+...++ .-.++||.+++.-.+-+|.
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~----- 408 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYGTVDFIFGN----- 408 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC--CEEEEeeEEecccceeccc-----
Confidence 34568888999999886543344444443 357889999999988888877663 4588999998877777776
Q ss_pred CcccEEeEEEEcEEEeCCc----eeEEEEeeCCC--CceEEeEEEEeEEEecCCc--cE--EEEeeeCCCCCCCCCCCCc
Q 017991 286 SSVRIHDIMVYGALISNTQ----NGVRIKTWQGG--SGSATNIQFLDVLMKNVSN--PI--IIDQYYCDSPVPCANQVCN 355 (362)
Q Consensus 286 ~~~~v~ni~i~n~~i~~~~----~gi~i~~~~g~--~g~i~ni~~~ni~~~~~~~--~i--~i~~~y~~~~~~c~~~~~~ 355 (362)
-.+.|+||.+.-.. ..-.|.. +++ +..-.++.|.|+++..... +. ....+-+-.+ .++-+-
T Consensus 409 -----a~avfq~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW---~~ysr~ 479 (566)
T PLN02713 409 -----AAVVFQNCNLYPRLPMQGQFNTITA-QGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPW---KEYSRT 479 (566)
T ss_pred -----ceEEEeccEEEEecCCCCCcceeee-cCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCC---CCcceE
Confidence 46688888885321 1112322 222 2345689999999987532 11 0111123233 346677
Q ss_pred eeeee
Q 017991 356 PYATC 360 (362)
Q Consensus 356 ~~~~~ 360 (362)
|||+|
T Consensus 480 V~~~s 484 (566)
T PLN02713 480 VVMQS 484 (566)
T ss_pred EEEec
Confidence 88877
No 129
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=35.29 E-value=38 Score=25.69 Aligned_cols=38 Identities=32% Similarity=0.546 Sum_probs=18.1
Q ss_pred eeccccCCCCcch-HHHHHHHHHHHcCCCCCcEEEEcCCcEEEe
Q 017991 58 GDFGAKGDGFNDD-TEAFANAWKKACSFPARTKIVFSAGYTFLI 100 (362)
Q Consensus 58 ~~~Ga~~dg~~dd-t~aiq~Ai~~a~~~~gg~~v~~P~G~~Y~i 100 (362)
.|||..+...... -+.|++||..-... ..+ +.+| ||+.
T Consensus 10 ~DFGi~~~~~N~~t~~~F~~aI~~hi~~--~~t--v~~G-tYr~ 48 (92)
T PF11429_consen 10 GDFGITGTNWNKETLEEFEDAIKEHIKN--PDT--VEKG-TYRR 48 (92)
T ss_dssp GGGT------SHHHHHHHHHHHHHHHH---TT---EE---BETT
T ss_pred cccCcccCCCChhhHHHHHHHHHHHhCC--CCe--Eecc-ceec
Confidence 4799888333333 36788888765444 356 4599 9974
No 130
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=34.42 E-value=2.3e+02 Score=22.22 Aligned_cols=17 Identities=18% Similarity=0.468 Sum_probs=10.2
Q ss_pred EEEEeecceEEEceEEee
Q 017991 182 ITFHKCKNLKVQNLRVVN 199 (362)
Q Consensus 182 i~~~~~~nv~I~~v~i~n 199 (362)
+.+. ..+++++++++.+
T Consensus 40 ~~i~-~~~~~~~G~~~~~ 56 (146)
T smart00722 40 ITIN-SNDVRVDGITIGG 56 (146)
T ss_pred EEEe-CCCCEEECeEEEe
Confidence 3443 4566777777766
No 131
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=33.89 E-value=21 Score=32.08 Aligned_cols=19 Identities=11% Similarity=0.044 Sum_probs=11.6
Q ss_pred CcccchhHHHHHHHHHHHHh
Q 017991 1 MKQLKFCSFSTFFIVLIHVL 20 (362)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~ 20 (362)
|+|||++.+++++++| ..|
T Consensus 1 ~~~~~~~~~~~~~~~l-~gC 19 (234)
T PRK12788 1 MRCMRLLVAILACLAL-AGC 19 (234)
T ss_pred ChHHHHHHHHHHHHHh-hcc
Confidence 8999988444444433 444
No 132
>PRK13791 lysozyme inhibitor; Provisional
Probab=30.06 E-value=34 Score=27.05 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=10.1
Q ss_pred CcccchhHHHHHHHHHH
Q 017991 1 MKQLKFCSFSTFFIVLI 17 (362)
Q Consensus 1 m~~~~~~~~~~~~~l~~ 17 (362)
|++||++++++++++|.
T Consensus 1 ~~~mk~~~~~~~~~~ls 17 (113)
T PRK13791 1 MMKRKLIPFTLFLAALS 17 (113)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 77888765555444433
No 133
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=30.02 E-value=48 Score=27.63 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=9.1
Q ss_pred EcCCcEEEeeeee
Q 017991 92 FSAGYTFLIHPID 104 (362)
Q Consensus 92 ~P~G~~Y~i~~l~ 104 (362)
||+- .|...+|.
T Consensus 89 fp~~-~YQTTTIi 100 (184)
T COG3054 89 FPHD-RYQTTTII 100 (184)
T ss_pred CChH-HceeeEEe
Confidence 7888 88776664
No 134
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=29.43 E-value=89 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHHcCCCCCcEEE
Q 017991 69 DDTEAFANAWKKACSFPARTKIV 91 (362)
Q Consensus 69 ddt~aiq~Ai~~a~~~~gg~~v~ 91 (362)
|.+++|-.||..+.+..|-+++.
T Consensus 60 ~~~D~Fg~aL~~aLR~~GYaV~e 82 (151)
T PRK13883 60 PTPDAFGQALVKALRDKGYALLE 82 (151)
T ss_pred CCCcHHHHHHHHHHHHcCeEEEe
Confidence 33446667776666666666664
No 135
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=27.36 E-value=2.5e+02 Score=20.80 Aligned_cols=12 Identities=17% Similarity=-0.003 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHH
Q 017991 70 DTEAFANAWKKA 81 (362)
Q Consensus 70 dt~aiq~Ai~~a 81 (362)
-.++|.+||.+-
T Consensus 66 l~avIsAAI~~h 77 (82)
T PRK02919 66 LKPVIAAAIHHH 77 (82)
T ss_pred hHHHHHHHHHHH
Confidence 346899998753
No 136
>PF15284 PAGK: Phage-encoded virulence factor
Probab=26.72 E-value=51 Score=22.81 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=8.8
Q ss_pred CcccchhHHHHHHHHHHH
Q 017991 1 MKQLKFCSFSTFFIVLIH 18 (362)
Q Consensus 1 m~~~~~~~~~~~~~l~~~ 18 (362)
||+.|..+..++++|+.+
T Consensus 1 Mkk~ksifL~l~~~LsA~ 18 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAA 18 (61)
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 776554434444444433
No 137
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=25.75 E-value=2.8e+02 Score=22.06 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=21.5
Q ss_pred CcEEEEcCCcEEEee-e-eeccCCCCCCceEEEEeEEECCCC
Q 017991 87 RTKIVFSAGYTFLIH-P-IDISGPCKSRLTLEISGTIVAPKD 126 (362)
Q Consensus 87 g~~v~~P~G~~Y~i~-~-l~l~~~~~s~v~l~~~G~i~~~~~ 126 (362)
+..|+||+|.+.++. + ..+ -.|.++|+|.+.++
T Consensus 12 g~~V~I~~g~~v~lD~~~~~l-------~~l~I~G~L~f~~~ 46 (125)
T PF10162_consen 12 GDNVVIPAGQTVLLDVSTPKL-------GSLIIGGTLIFDDD 46 (125)
T ss_pred CCEEEECCCCEEEEcCCChhe-------eEEEEEEEEEEccC
Confidence 789999999444442 2 222 24556899988764
No 138
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.92 E-value=83 Score=28.15 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=29.7
Q ss_pred eeEEeeeccccCCCCcchH------------HHHHHHHHHHcCCCCCcEEEE--cCCcEEEe
Q 017991 53 RVIFVGDFGAKGDGFNDDT------------EAFANAWKKACSFPARTKIVF--SAGYTFLI 100 (362)
Q Consensus 53 ~~~~v~~~Ga~~dg~~ddt------------~aiq~Ai~~a~~~~gg~~v~~--P~G~~Y~i 100 (362)
.++|++||....-.+-||+ +-|-+||+.+++.. +..|++ |.|+.|..
T Consensus 34 ~~~n~Rdf~~dkh~~VDD~pyGGG~GMvmk~epi~~Al~~~~~~~-~~~vi~lsP~G~~f~Q 94 (240)
T COG0336 34 EVVNPRDFATDKHKTVDDTPYGGGAGMVMKPEPLFDALDSVKAAK-KAKVILLSPQGKPFTQ 94 (240)
T ss_pred EeecHHHhccCcCcccCCccCCCCCccEeccHHHHHHHHHHHhcc-CCeEEEECCCCCccCH
Confidence 3566667765555556665 56899999766543 234444 89966644
No 139
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=24.39 E-value=48 Score=28.68 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=16.0
Q ss_pred CcccchhHHHHHHHHHHHHhhh
Q 017991 1 MKQLKFCSFSTFFIVLIHVLVC 22 (362)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~~~ 22 (362)
|++||....+++++||+..|..
T Consensus 1 mtk~k~~~~il~~al~l~GCs~ 22 (200)
T COG3417 1 MTKMKIYASILLLALFLSGCSS 22 (200)
T ss_pred CchHHHHHHHHHHHHHHhhccc
Confidence 7888877777777777766653
No 140
>PRK09718 hypothetical protein; Validated
Probab=24.29 E-value=2.5e+02 Score=28.17 Aligned_cols=13 Identities=0% Similarity=-0.133 Sum_probs=7.7
Q ss_pred ceeEEEEeeEEcC
Q 017991 260 SSLIRIRNFACGP 272 (362)
Q Consensus 260 ~~ni~i~n~~~~~ 272 (362)
.+++.+++|.+..
T Consensus 167 Lk~V~FsdCnL~y 179 (512)
T PRK09718 167 LDTVDFSQSQLTH 179 (512)
T ss_pred cCCcEEeeeEecc
Confidence 3556677766643
No 141
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=23.76 E-value=1.8e+02 Score=26.42 Aligned_cols=8 Identities=25% Similarity=0.625 Sum_probs=5.0
Q ss_pred cCCcEEEee
Q 017991 93 SAGYTFLIH 101 (362)
Q Consensus 93 P~G~~Y~i~ 101 (362)
|.| +|.++
T Consensus 154 p~G-ty~Lg 161 (250)
T PF05342_consen 154 PSG-TYKLG 161 (250)
T ss_pred CCc-eEEEC
Confidence 566 77663
No 142
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=23.69 E-value=2.8e+02 Score=26.45 Aligned_cols=9 Identities=56% Similarity=1.173 Sum_probs=7.5
Q ss_pred EcCCcEEEee
Q 017991 92 FSAGYTFLIH 101 (362)
Q Consensus 92 ~P~G~~Y~i~ 101 (362)
+-+| +|.+.
T Consensus 82 lkaG-~Y~l~ 90 (342)
T TIGR00247 82 FKAG-TYLLN 90 (342)
T ss_pred ccce-EEEEC
Confidence 7899 99884
No 143
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=23.45 E-value=66 Score=20.70 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=9.0
Q ss_pred CcccchhHHHHHHHHHHHHhhh
Q 017991 1 MKQLKFCSFSTFFIVLIHVLVC 22 (362)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~~~ 22 (362)
|||..++ +++++.+++.+|+.
T Consensus 1 MkKi~~~-~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFI-GIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEe-HHHHHHHHHHHhhh
Confidence 7744333 33333344444444
No 144
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=22.25 E-value=2.3e+02 Score=20.18 Aligned_cols=9 Identities=11% Similarity=0.242 Sum_probs=4.0
Q ss_pred cchhHHHHH
Q 017991 4 LKFCSFSTF 12 (362)
Q Consensus 4 ~~~~~~~~~ 12 (362)
||.|.+|++
T Consensus 1 MKhFaiLil 9 (78)
T PF11714_consen 1 MKHFAILIL 9 (78)
T ss_pred CchHHHHHH
Confidence 344544443
No 145
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=21.60 E-value=1.1e+02 Score=23.36 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCCeeEEeeeccccCCCCcchHHHHHHHHHHHcCCCCCcEEEEcC
Q 017991 50 KSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSA 94 (362)
Q Consensus 50 ~~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~~a~~~~gg~~v~~P~ 94 (362)
..++.+.++.| ..||......++|.+ |+.++|.++++-|-
T Consensus 46 ~~~r~~~~~a~-~~G~dy~~~~~~L~~----al~~~G~G~LvHP~ 85 (93)
T PF07157_consen 46 RKARRIRVTAF-FVGDDYEAQRDALIA----ALEAPGPGELVHPW 85 (93)
T ss_pred CCCcEEEEEEE-EECCcHHHHHHHHHH----HHcCCCCeEEecCC
Confidence 34556666655 335443333444444 44557778888773
No 146
>TIGR01781 Trep_dent_lipo Treponema denticola clustered lipoprotein. This model represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome. Two other neighboring genes share the lipoprotein signal peptide region but do not show more extensive homology. The function of this locus is unknown.
Probab=20.66 E-value=62 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=17.3
Q ss_pred CCCeeeecCccCEEEEeeEEecCCc
Q 017991 228 NTDGIHISASRGVEVKNSIVGTGDD 252 (362)
Q Consensus 228 ~~DGI~~~~s~nv~I~n~~i~~gdD 252 (362)
-.||++..--++|.=-.|+|-.+|-
T Consensus 259 ~edg~~~~~~~~I~~V~CFIve~dk 283 (412)
T TIGR01781 259 EEDGEHHPWKNNICDVACFIVEGDK 283 (412)
T ss_pred hhcccchhhhhheeeEEEEEEeCCe
Confidence 5678887555677777787776654
No 147
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=20.40 E-value=3.6e+02 Score=19.84 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=9.7
Q ss_pred chHHHHHHHHHHH
Q 017991 69 DDTEAFANAWKKA 81 (362)
Q Consensus 69 ddt~aiq~Ai~~a 81 (362)
+..+||.+||.+.
T Consensus 65 elvAaIsAAI~~~ 77 (82)
T TIGR01195 65 ELVAAIAAAVHEH 77 (82)
T ss_pred hHHHHHHHHHHHH
Confidence 4578999999753
Done!