BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017992
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 191/331 (57%), Gaps = 13/331 (3%)
Query: 31 YDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVAN 90
+ L+ V + +WG T+ ++ + D+ G+ DV LG+ + Y Y GA +GRVAN
Sbjct: 24 FQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVAN 83
Query: 91 RIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDG 150
RI F +DG Y L N+ N LHGG GF V+W N V F+ S DG
Sbjct: 84 RIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSN-----GVQFSRISPDG 138
Query: 151 EQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEI 210
E+G+PG+L V V YTL G +L V +A+A ++ATPVNL H+Y+NL G S +I E+
Sbjct: 139 EEGYPGELKVWVTYTLDGG-ELIVNYRAQA-SQATPVNLTNHSYFNLAGQASPNINDHEV 196
Query: 211 QIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKL-PHGYDINYVLEAGSGN 269
I A + PVD LIPTG + V+GT +D KP +G + +G+D N+ L+ G+
Sbjct: 197 TIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLK---GS 253
Query: 270 KMKK-VAVVHDKKSGIVMKLTTNQPGVQFYTANSLK-DVKGKGGFVYQPHAALCLETQAF 327
K K A VH SG V+++ T QPGVQFYT N L +KGK G VY H+ CLETQ +
Sbjct: 254 KEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNW 313
Query: 328 PDSVNHPNFPSTIVNPGETYKHHMVFKFSTS 358
PD+VN P FP ++ PGE Y H FKFS +
Sbjct: 314 PDAVNQPRFPPVLLRPGEEYDHTTWFKFSVA 344
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
pdb|1LUR|B Chain B, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
Length = 339
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/329 (33%), Positives = 162/329 (49%), Gaps = 19/329 (5%)
Query: 35 KGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGG 94
K + L +GATL + PDK+GK D+ LG+D++++++ D++ IG TVGRVANRI
Sbjct: 20 KQGLTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKDAASIGKTVGRVANRIKN 79
Query: 95 AQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPH-VIFAYHSYDGEQG 153
+ DG Y N G + LHGG G W+V + HAP V F+ + + + G
Sbjct: 80 STLHFDGKQYTXTPNNGPHYLHGGPNGLGYRKWEVVR-----HAPESVSFSVRANEQDDG 134
Query: 154 FPGDLSVTVGYTLVGDKQLRVTMKAKALNKATP--VNLAQHTYWNLGGHNSGDILSEE-I 210
PGD + V YT+ QL + A TP + L H YWNL G D ++E +
Sbjct: 135 LPGDAKIDVTYTVNDRNQLIIEHHATC---DTPGLLALTNHAYWNLDG---SDTVAEHFL 188
Query: 211 QIFASYFTPVDSQLIPTGHIVSVKGTPYDFL--KPHTVGGRIDKLPHGYDINYVLEAGSG 268
+ A F VD PTG I SV T +DF K G+ + D + V+ +
Sbjct: 189 EXEADEFVEVDDTFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDLDNDLVITKKTP 248
Query: 269 NKMKKVAV-VHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAF 327
+ +KSGI + +TT+ P + Y A+ D KGK G Y+ + AL +E Q
Sbjct: 249 PSTPSTYLRFWSEKSGIELSITTSYPVIHLY-ASKFLDCKGKKGEHYKANKALAIEPQFH 307
Query: 328 PDSVNHPNFPSTIVNPGETYKHHMVFKFS 356
+ N +FP + PG+ Y +V+ FS
Sbjct: 308 SAAPNFDHFPDVSLRPGDHYCQEIVYTFS 336
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 155/333 (46%), Gaps = 31/333 (9%)
Query: 38 FSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKN-DSSYIGATVGRVANRIGGAQ 96
F N GA+++ + + + V LGY++ Y N DS+YIGAT+GR ANRI +
Sbjct: 384 FQATFANLGASIVDLKVNGQ-----SVVLGYENEEGYLNPDSAYIGATIGRYANRISKGK 438
Query: 97 FTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQG--F 154
F+L Y+L N G N H F + QN Y D E+ F
Sbjct: 439 FSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTA-EYMLIDNEKDTEF 497
Query: 155 PGDLSVTVGYTL-VGDKQLRVTMKAK-ALNKATPVNLAQHTYWNLGGHNSGDILSEEIQI 212
PGDL VT+ YT+ V K L + K K +ATP+NL H+Y+NL I EI +
Sbjct: 498 PGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATPINLTNHSYFNLNKPYGDTIEGTEIMV 557
Query: 213 FASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGS----- 267
+ VD +IPTG+IV + ++ KP +G K P +D +V++ +
Sbjct: 558 RSKKSVDVDKNMIPTGNIVDREIATFNSTKPTVLG---PKNPQ-FDCCFVVDENAKPSQI 613
Query: 268 ---GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLET 324
N++ + S I +++ + +P QFYT + L G Y+ +E
Sbjct: 614 NTLNNELTLIVKAFHPDSNITLEVLSTEPTYQFYTGDFL-----SAG--YEARQGFAIEP 666
Query: 325 QAFPDSVNHPNFPSTI-VNPGETYKHHMVFKFS 356
+ D++N N+ + + GETY +V++FS
Sbjct: 667 GRYIDAINQENWKDCVTLKNGETYGSKIVYRFS 699
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
Length = 347
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 146/335 (43%), Gaps = 28/335 (8%)
Query: 35 KGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGG 94
K ++ TN GA ++ KH + LG+DS +Y +Y GATVG A RI
Sbjct: 20 KAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 95 AQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGF 154
+ G Y L NEG LHGG+ +W E + G V F+ S DG G+
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYE-VTDLGAEVQVKFSLVSNDGTNGY 133
Query: 155 PGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFA 214
PG + ++V ++ D + ++ +A + +K T N H Y+NL G S + + +++ A
Sbjct: 134 PGKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAA 192
Query: 215 SYFTPVDSQL-IPTGHIVSVKGTPYDFLKPHTVGGRID------KLPHGYDINYVLEAGS 267
S F P+ Q I G IV +K T DF + + + +L G D ++L+
Sbjct: 193 SRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLG 252
Query: 268 GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQP-----HAALCL 322
+K + + D + + T+QP + +TAN G G +Y H +
Sbjct: 253 LDKEQARLTLDDTS----ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITF 303
Query: 323 ETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFST 357
E Q P S P + GE Y+ ++ T
Sbjct: 304 ECQVSPGSEQIPELGDISLKAGEKYQATTIYSLHT 338
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS4|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
pdb|1NS4|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
Length = 347
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 146/335 (43%), Gaps = 28/335 (8%)
Query: 35 KGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGG 94
K ++ TN GA ++ KH + LG+DS +Y +Y GATVG A RI
Sbjct: 20 KAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 95 AQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGF 154
+ G Y L NEG LHGG+ +W E + G V F+ S DG G+
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYE-VTDLGAEVQVKFSLVSNDGTNGY 133
Query: 155 PGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFA 214
PG + ++V ++ D + ++ +A + +K T N H Y+NL G S + + +++ A
Sbjct: 134 PGKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAA 192
Query: 215 SYFTPVDSQL-IPTGHIVSVKGTPYDFLKPHTVGGRID------KLPHGYDINYVLEAGS 267
S F P+ Q I G IV +K T DF + + + +L G D ++L+
Sbjct: 193 SRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLG 252
Query: 268 GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQP-----HAALCL 322
+K + + D + + T+QP + +TAN G G +Y H +
Sbjct: 253 LDKEQARLTLDDTS----ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITF 303
Query: 323 ETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFST 357
+ Q P S P + GE Y+ ++ T
Sbjct: 304 QCQVSPGSEQIPELGDISLKAGEKYQATTIYSLHT 338
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NS8|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NSR|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
pdb|1NSR|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
Length = 347
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 146/335 (43%), Gaps = 28/335 (8%)
Query: 35 KGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGG 94
K ++ TN GA ++ KH + LG+DS +Y +Y GATVG A RI
Sbjct: 20 KAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 95 AQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGF 154
+ G Y L NEG LHGG+ +W E + G V F+ S DG G+
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYE-VTDLGAEVQVKFSLVSNDGTNGY 133
Query: 155 PGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFA 214
PG + ++V ++ D + ++ +A + +K T N H Y+NL G S + + +++ A
Sbjct: 134 PGKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAA 192
Query: 215 SYFTPVDSQL-IPTGHIVSVKGTPYDFLKPHTVGGRID------KLPHGYDINYVLEAGS 267
S F P+ Q I G IV +K T DF + + + +L G + ++L+
Sbjct: 193 SRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGINHPFLLDQLG 252
Query: 268 GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQP-----HAALCL 322
+K + + D + + T+QP + +TAN G G +Y H +
Sbjct: 253 LDKEQARLTLDDTS----ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITF 303
Query: 323 ETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFST 357
E Q P S P + GE Y+ ++ T
Sbjct: 304 ECQVSPGSEQIPELGDISLKAGEKYQATTIYSLHT 338
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS2|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS7|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
pdb|1NS7|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
Length = 347
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 145/335 (43%), Gaps = 28/335 (8%)
Query: 35 KGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGG 94
K ++ TN GA ++ KH + LG+DS +Y +Y GATVG A RI
Sbjct: 20 KAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 95 AQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGF 154
+ G Y L NEG LHGG+ +W E + G V F+ S DG G+
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYE-VTDLGAEVQVKFSLVSNDGTNGY 133
Query: 155 PGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFA 214
PG + ++V ++ D + ++ +A + +K T N H Y+NL G S + + +++ A
Sbjct: 134 PGKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAA 192
Query: 215 SYFTPVDSQL-IPTGHIVSVKGTPYDFLKPHTVGGRID------KLPHGYDINYVLEAGS 267
S F P+ Q I G IV +K T DF + + + +L G D ++L+
Sbjct: 193 SRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLG 252
Query: 268 GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQP-----HAALCL 322
+K + + D + + T+QP + +TAN G G +Y H +
Sbjct: 253 LDKEQARLTLDDTS----ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITF 303
Query: 323 ETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFST 357
Q P S P + GE Y+ ++ T
Sbjct: 304 ACQVSPGSEQIPELGDISLKAGEKYQATTIYSLHT 338
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSV|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
pdb|1NSV|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
Length = 347
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 146/335 (43%), Gaps = 28/335 (8%)
Query: 35 KGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGG 94
K ++ TN GA ++ KH + LG+DS +Y +Y GATVG A RI
Sbjct: 20 KAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 95 AQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGF 154
+ G Y L NEG L+GG+ +W E + G V F+ S DG G+
Sbjct: 75 GLVKISGKDYILNQNEGPQTLNGGEESIHTKLWTYE-VTDLGAEVQVKFSLVSNDGTNGY 133
Query: 155 PGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFA 214
PG + ++V ++ D + ++ +A + +K T N H Y+NL G S + + +++ A
Sbjct: 134 PGKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAA 192
Query: 215 SYFTPVDSQL-IPTGHIVSVKGTPYDFLKPHTVGGRID------KLPHGYDINYVLEAGS 267
S F P+ Q I G IV +K T DF + + + +L G D ++L+
Sbjct: 193 SRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLG 252
Query: 268 GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQP-----HAALCL 322
+K + + D + + T+QP + +TAN G G +Y H +
Sbjct: 253 LDKEQARLTLDDTS----ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITF 303
Query: 323 ETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFST 357
E Q P S P + GE Y+ ++ T
Sbjct: 304 ECQVSPGSEQIPELGDISLKAGEKYQATTIYSLHT 338
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
pdb|1NSZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
Length = 347
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 146/335 (43%), Gaps = 28/335 (8%)
Query: 35 KGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGG 94
K ++ TN GA ++ KH + LG+DS +Y +Y GATVG A RI
Sbjct: 20 KAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 95 AQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGF 154
+ G Y L NEG LHGG+ +W E + G V F+ S DG G+
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYE-VTDLGAEVQVKFSLVSNDGTNGY 133
Query: 155 PGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFA 214
PG + ++V ++ D + ++ +A + +K T N + Y+NL G S + + +++ A
Sbjct: 134 PGKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGNVYFNLNGDASESVENHGLRLAA 192
Query: 215 SYFTPVDSQL-IPTGHIVSVKGTPYDFLKPHTVGGRID------KLPHGYDINYVLEAGS 267
S F P+ Q I G IV +K T DF + + + +L G D ++L+
Sbjct: 193 SRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLG 252
Query: 268 GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQP-----HAALCL 322
+K + + D + + T+QP + +TAN G G +Y H +
Sbjct: 253 LDKEQARLTLDDTS----ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITF 303
Query: 323 ETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFST 357
E Q P S P + GE Y+ ++ T
Sbjct: 304 ECQVSPGSEQIPELGDISLKAGEKYQATTIYSLHT 338
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSM|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSS|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
pdb|1NSS|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
Length = 347
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 145/335 (43%), Gaps = 28/335 (8%)
Query: 35 KGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGG 94
K ++ TN GA ++ KH + LG+DS +Y +Y GATVG A RI
Sbjct: 20 KAGVTISFTNLGARIVDWQKDGKH-----LILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 95 AQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGF 154
+ G Y L NEG LHGG+ +W E + G V F+ S DG G+
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYE-VTDLGAEVQVKFSLVSNDGTNGY 133
Query: 155 PGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFA 214
PG + ++V ++ D + ++ +A + +K T N H Y+NL G S + + +++ A
Sbjct: 134 PGKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAA 192
Query: 215 SYFTPVDSQL-IPTGHIVSVKGTPYDFLKPHTVGGRID------KLPHGYDINYVLEAGS 267
S F P+ Q I G IV +K T DF + + + +L G ++L+
Sbjct: 193 SRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIAHPFLLDQLG 252
Query: 268 GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQP-----HAALCL 322
+K + + D + + T+QP + +TAN G G +Y H +
Sbjct: 253 LDKEQARLTLDDTS----ISVFTDQPSIVIFTANF-----GDLGTLYHEKKQVHHGGITF 303
Query: 323 ETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFST 357
E Q P S P + GE Y+ ++ T
Sbjct: 304 ECQVSPGSEQIPELGDISLKAGEKYQATTIYSLHT 338
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
pdb|1YGA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
Length = 342
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 161/346 (46%), Gaps = 36/346 (10%)
Query: 28 VGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGR 87
+ + D KK F + GATL+ + + +G+ V GY +V DY D + +GATVGR
Sbjct: 13 ITIGDEKK--FQATIAPLGATLVDLKV---NGQ--SVVQGYSNVQDYLTDGNMMGATVGR 65
Query: 88 VANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVI----F 143
ANRI F+LD +KL N N H + +K +N +V+
Sbjct: 66 YANRIAKGVFSLDDGPHKLTVNNCGNTNHSSISSLNLKQYKASPVENPSKGVYVVEFKLL 125
Query: 144 AYHSYDGEQGFPGDLSVTVGYTL-VGDKQLRVTMKAKALN-KATPVNLAQHTYWNLGGHN 201
H+ FPGDL VTV YTL V + L + +A+ + ATP+N+ H+Y+NL
Sbjct: 126 DDHTQPNPNEFPGDLEVTVKYTLNVAEMTLDMEYQAQLVRGDATPINMTNHSYFNLNKVK 185
Query: 202 S-GDILSEEIQIFASYFTPV-DSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDI 259
S I E+++ ++ V + L+PTG I+ +D KP + + P +D
Sbjct: 186 SEKSIRGTEVKVCSNKSLEVTEGALLPTGKIIERNIATFDSTKPTVLH---EDTP-VFDC 241
Query: 260 NYVLEAG---------SGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKG 310
++++A S NK+ V + +S I +++T +P V YT ++L G
Sbjct: 242 TFIIDANKDLKTTDSVSVNKLVPVFKAYHPESHIKFEVSTTEPTVHLYTGDNL-----CG 296
Query: 311 GFVYQPHAALCLETQAFPDSVNHPNFP-STIVNPGETYKHHMVFKF 355
FV P + ++ + D++N + ++ GE Y +KF
Sbjct: 297 KFV--PRSGFAVQQGRYVDAINRDEWRGCVLLKRGEVYTSKTQYKF 340
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
Length = 338
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 149/327 (45%), Gaps = 33/327 (10%)
Query: 38 FSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQF 97
+VK+ N+GATL V+L + ++ L +S DY + +++G TVGR+A R+ Q+
Sbjct: 29 MAVKVLNYGATLEKVLLDGE-----NMILSLNSPEDYSKERNFLGGTVGRIAGRVRAGQW 83
Query: 98 TLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGD 157
++L N+G N +HGG IG VW + HA V DG +PG+
Sbjct: 84 KHGNEIHQLPLNDGDNHIHGG-IGTDMHVWDFRPSCDSEHA-RVDLTLFDPDGNNDYPGN 141
Query: 158 LSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYF 217
L + Y L + L ++A + +K T N HTY+NL G + D+ +Q+ A Y+
Sbjct: 142 LKLHARYELDNENNLHYLLEAVS-DKLTIFNPVNHTYFNL-GERAEDL---NLQMNADYY 196
Query: 218 TPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRID------KLPHGYDINYVLEAGSGNKM 271
PVD +P + V GT +DF K +G ++ KL +G D ++L N
Sbjct: 197 LPVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLRNGLDHPFIL-----NGN 251
Query: 272 KKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQ--PHAALCLETQAFPD 329
A++ K +++K TN P + Y N G V + + E Q P
Sbjct: 252 NPAALLSSNKHRLIVK--TNAPALVLYAGNHFNHT----GIVNNIGQYDGITFEAQCPPA 305
Query: 330 SVNHPNFPSTIVNPGETYKHHMVFKFS 356
N + + P E +K + +KF
Sbjct: 306 EGN--DLGQITLLPFEKFKRTVDWKFE 330
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 80/209 (38%), Gaps = 20/209 (9%)
Query: 39 SVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFT 98
+K TN G T++ P K K D+KN G V NRI F
Sbjct: 42 ELKDTNKGVTILRT--PKKDLKF----------EDFKNRPQVYGLPVLFPPNRIDDGTFK 89
Query: 99 LDGIHYKLVANEGK--NMLHGGKIGFSDVVWKV--EKYQNEGHAPHVIFAY-HSYDGEQG 153
L YK NE K N +HG + W V +K + V+F + + +
Sbjct: 90 LGDKTYKFPINEAKNNNYIHG---FIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKY 146
Query: 154 FPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIF 213
F + + Y L + T ++ P+++ H+ +N+ + + ++I
Sbjct: 147 FSHEFQFKLSYELSSKGLKQTTSVVNLSSEEXPLSVGYHSAFNVPFIEGSEDSNCRVKIS 206
Query: 214 ASYFTPVDSQLIPTGHIVSVKGTPYDFLK 242
F DS+ +PTG + G ++L+
Sbjct: 207 IDKFWKQDSRNLPTGESFAPTGEQKEYLE 235
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Query: 213 FASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMK 272
FA YF + Q+I TG++V+++ G+I K G I V+ +G +
Sbjct: 611 FAQYFESLGGQVIETGYLVTLE------------KGKIRKAEKGEKIIGVISETAGFVLG 658
Query: 273 KV------AVVHDKKSGIVMKLTTNQPGVQF 297
+ AV+ ++ GI+ + T + GV+F
Sbjct: 659 ESSFEWQGAVLKNEFGGIIYEEVTTEDGVKF 689
>pdb|3GQH|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 C- Terminal Fragment
pdb|3GQH|B Chain B, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 C- Terminal Fragment
pdb|3GQH|C Chain C, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 C- Terminal Fragment
pdb|3GQK|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 C- Terminal Fragment In Complex With Atp
Length = 163
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Query: 213 FASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMK 272
FA YF + Q+I TG++V+++ G+I K G I V+ +G +
Sbjct: 2 FAEYFESLGGQVIETGYLVTLE------------KGKIRKAEKGEKIIGVISETAGFVLG 49
Query: 273 KV------AVVHDKKSGIVMKLTTNQPGVQF 297
+ AV+ ++ GI+ + T + GV+F
Sbjct: 50 ESSFEWQGAVLKNEFGGIIYEEVTTEDGVKF 80
>pdb|2DDX|A Chain A, Crystal Structure Of Beta-1,3-Xylanase From Vibrio Sp.
Ax-4
Length = 333
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 53 VLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGK 112
VL + G L+ V DSVNDY +S +G V N +G LDG++ A G+
Sbjct: 4 VLVPESGILVSVGQDVDSVNDY---ASALGTIPAGVTNYVG--IVNLDGLNSDADAGAGR 58
Query: 113 NML 115
N +
Sbjct: 59 NNI 61
>pdb|1UF2|K Chain K, The Atomic Structure Of Rice Dwarf Virus (Rdv)
Length = 506
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 264 EAGSGNKM---KKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKD---VKGKGGFVYQPH 317
EA SGN + ++++HDK I+ +T+N+PGV N + V K GF + H
Sbjct: 379 EALSGNGLVTDSNISMLHDK---ILDTITSNKPGVVLRDGNKKSENIVVCFKNGFPNKKH 435
Query: 318 AALCL 322
+ L L
Sbjct: 436 SLLQL 440
>pdb|2D7U|A Chain A, Crystal Structure Of Hypothetical Adenylosuccinate
Synthetase, Ph0438 From Pyrococcus Horikoshii Ot3
Length = 339
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 15 FGFVVHGSVA--SNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVN 72
G V +G+V VG +D + +S ++ GAT+++V + DK+ K A G V
Sbjct: 245 LGLVEYGTVTGRRRRVGWFDFEMARYSARIN--GATMLAVTMLDKYDK---EAFG---VT 296
Query: 73 DYKNDSSYIGATVGRVANRIG 93
DY + + R+G
Sbjct: 297 DYDKLPRKAKEFIEEIEERVG 317
>pdb|4HQL|A Chain A, Crystal Structure Of Magnesium-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQL|B Chain B, Crystal Structure Of Magnesium-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQN|A Chain A, Crystal Structure Of Manganese-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQN|B Chain B, Crystal Structure Of Manganese-Loaded Plasmodium Vivax
Trap Protein
pdb|4HQO|A Chain A, Crystal Structure Of Plasmodium Vivax Trap Protein
pdb|4HQO|B Chain B, Crystal Structure Of Plasmodium Vivax Trap Protein
Length = 266
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 22 SVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKN 76
V + V +Y L G+ S+ NW I+ V+P +G + ++L D++N Y N
Sbjct: 13 EVCNEQVDLYLLVDGSGSIGYPNW----ITKVIPMLNGLINSLSLSRDTINLYMN 63
>pdb|4E4G|A Chain A, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|B Chain B, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|C Chain C, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|D Chain D, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|E Chain E, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|F Chain F, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|G Chain G, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
pdb|4E4G|H Chain H, Crystal Structure Of Putative Methylmalonate-Semialdehyde
Dehydrogenase From Sinorhizobium Meliloti 1021
Length = 521
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 10/120 (8%)
Query: 94 GAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHV-IFAYHSYDGEQ 152
GA+ +DG +KL E + + GG + F DV + Y+ E P + + +Y+
Sbjct: 367 GAKLVVDGRDFKLQGYENGHFI-GGCL-FDDVTPDXDIYKTEIFGPVLSVVRARNYEEAL 424
Query: 153 GFPGDLSVTVG---YTLVGDKQL----RVTMKAKALNKATPVNLAQHTYWNLGGHNSGDI 205
P G YT GD R+ + +N PV LA H++ + GD+
Sbjct: 425 SLPXKHEYGNGVAIYTRDGDAARDFASRINIGXVGVNVPIPVPLAYHSFGGWKSSSFGDL 484
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,999,432
Number of Sequences: 62578
Number of extensions: 541563
Number of successful extensions: 1179
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 22
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)