BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017992
(362 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5EA79|GALM_BOVIN Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1
Length = 342
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/339 (43%), Positives = 200/339 (58%), Gaps = 13/339 (3%)
Query: 23 VASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIG 82
+ + V + L+ V + +WG T+ ++ + D+ G+ DV LG+D + Y Y G
Sbjct: 14 LGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFDELEGYLQKQPYFG 73
Query: 83 ATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVI 142
A VGRVANRI FTLDG YKL N G N LHGG GF V+W N V
Sbjct: 74 AVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVKGFDKVLWTPRVLSN-----GVE 128
Query: 143 FAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNS 202
F+ S DGE+G+PG+L V V YTL G +L V +A+A ++ TPVNL H+Y+NL G S
Sbjct: 129 FSRVSPDGEEGYPGELKVWVMYTLDGG-ELVVNYRAQA-SQTTPVNLTNHSYFNLAGQGS 186
Query: 203 GDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKL-PHGYDINY 261
+I E+ I A F PVD LIPTG I SV+GT +D KP +G + + +G+D N+
Sbjct: 187 PNIYDHEVTIEADAFLPVDEVLIPTGEIASVQGTAFDLRKPVELGKHLQEFHVNGFDHNF 246
Query: 262 VLEAGSGNKMKK-VAVVHDKKSGIVMKLTTNQPGVQFYTANSLK-DVKGKGGFVYQPHAA 319
L+ G+K K+ A VH SG V+++ T QPGVQFYT N L +KGK G Y H+
Sbjct: 247 CLK---GSKEKRFCARVHHAGSGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAGYPKHSG 303
Query: 320 LCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTS 358
CLETQ++PD+VN P+FP ++ PGE Y H FKFS +
Sbjct: 304 FCLETQSWPDAVNQPHFPPVLLKPGEEYDHTTWFKFSVA 342
>sp|Q66HG4|GALM_RAT Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1
Length = 342
Score = 260 bits (664), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/351 (42%), Positives = 199/351 (56%), Gaps = 13/351 (3%)
Query: 12 LVAFGFVVHGSVASN--AVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYD 69
+V+ V G + S AV + L+ +V + +WG T+ ++ + D+ GK DV LG+
Sbjct: 1 MVSVTRTVFGELPSGGGAVEKFQLRSDQLNVDIISWGCTITALQVKDRQGKASDVVLGFA 60
Query: 70 SVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKV 129
+ Y Y GA VGRVANRI +FT+DG Y L N N LHGG GF V+W
Sbjct: 61 ELEGYLQKQPYFGAVVGRVANRIAKGRFTVDGKEYHLPINREPNSLHGGFRGFDKVLWTP 120
Query: 130 EKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNL 189
+ N V F+ S DGE+G+PG+L V V YTL G +L V +A+A ++ TPVNL
Sbjct: 121 QVLSN-----GVQFSRVSPDGEEGYPGELKVWVTYTLDGG-ELVVNYRAQA-SQTTPVNL 173
Query: 190 AQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGR 249
H+Y+NL G S DI E+ I A + PVD LIPTG I V+GT +D KP +G
Sbjct: 174 TNHSYFNLAGQGSPDIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGKH 233
Query: 250 IDKL-PHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLK-DVK 307
+ HG+D N+ L+ K A VH SG ++++ T QPGVQFYT N L +K
Sbjct: 234 LQSYHIHGFDHNFCLKESKEKKF--CARVHHAASGRILEVYTTQPGVQFYTGNFLDGTLK 291
Query: 308 GKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTS 358
GK G VY H+ CLETQ +PD+VN P FP ++ PGE Y H FKFS +
Sbjct: 292 GKSGEVYPKHSGFCLETQNWPDAVNQPQFPPILLRPGEEYNHTTWFKFSVA 342
>sp|Q9GKX6|GALM_PIG Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1
Length = 342
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 200/351 (56%), Gaps = 13/351 (3%)
Query: 12 LVAFGFVVHGSVASNA--VGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYD 69
+V+ V G + S A V + L+ V + +WG T+ ++ + D+ G+ DV LG+
Sbjct: 1 MVSVTRSVFGDLPSGAGTVEKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFA 60
Query: 70 SVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKV 129
+ +Y Y GA VGRVANRI FTLDG YKL N G N LHGG GF V+W
Sbjct: 61 ELKEYLQKHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTP 120
Query: 130 EKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNL 189
N + F+ S DGE+G+PG+L V V YTL G +L V +A+A ++ TPVNL
Sbjct: 121 RVLSN-----GIEFSRVSPDGEEGYPGELKVWVTYTLDGG-ELVVNYRAQA-SQTTPVNL 173
Query: 190 AQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGR 249
H+Y+NL G S +I E+ I A F PVD LIPTG I V+GT +D KP +G
Sbjct: 174 TNHSYFNLAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKH 233
Query: 250 IDKL-PHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLK-DVK 307
+ + +G+D N+ L+ + A VH SG V+++ T QPG+QFYT N L +K
Sbjct: 234 LQEFHINGFDHNFCLKRSKEKQF--CARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLK 291
Query: 308 GKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTS 358
GK G VY H+ CLETQ +P++VN P+FP ++ PGE Y H F FS +
Sbjct: 292 GKTGAVYPKHSGFCLETQNWPNAVNQPHFPPVLLKPGEEYNHTTWFVFSVA 342
>sp|Q8K157|GALM_MOUSE Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1
Length = 342
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/351 (42%), Positives = 197/351 (56%), Gaps = 13/351 (3%)
Query: 12 LVAFGFVVHGSVASN--AVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYD 69
+V+ V G + S V + L+ SV + +WG T+ ++ + D+ GK DV LG+
Sbjct: 1 MVSVTRTVFGELPSGGGTVEKFQLRSDQLSVDIISWGCTITALQVKDRQGKASDVVLGFA 60
Query: 70 SVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKV 129
+ Y Y GA VGRVANRI +FT+ G Y L N N LHGG GF V+W
Sbjct: 61 ELEGYLQKQPYFGAVVGRVANRIAKGRFTIGGKEYHLPVNREPNSLHGGFTGFDKVLWTP 120
Query: 130 EKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNL 189
+ N V F S DGE+G+PG+L V V YTL G +L + +A+A ++ TPVNL
Sbjct: 121 QVLTN-----GVQFFRVSPDGEEGYPGELKVWVTYTLDGG-ELVINYRAQA-SQTTPVNL 173
Query: 190 AQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGR 249
H+Y+NL G S +I E+ I A + PVD LIPTG I V+GT +D KP +G
Sbjct: 174 TNHSYFNLAGQGSPNIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGTH 233
Query: 250 I-DKLPHGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLK-DVK 307
+ D HG+D N+ L+ K A V SG ++++ T QPGVQFYT N L +K
Sbjct: 234 LQDYHIHGFDHNFCLKESKEKKF--CARVRHAASGRILEVYTTQPGVQFYTGNFLDGTLK 291
Query: 308 GKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFSTS 358
GK G VY H+ LCLETQ +PDSVN P FP ++ PGE Y H FKFS +
Sbjct: 292 GKNGAVYPKHSGLCLETQNWPDSVNQPQFPPALLRPGEEYNHTTWFKFSVA 342
>sp|Q96C23|GALM_HUMAN Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1
Length = 342
Score = 249 bits (635), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 191/331 (57%), Gaps = 13/331 (3%)
Query: 31 YDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVAN 90
+ L+ V + +WG T+ ++ + D+ G+ DV LG+ + Y Y GA +GRVAN
Sbjct: 22 FQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVAN 81
Query: 91 RIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDG 150
RI F +DG Y L N+ N LHGG GF V+W N V F+ S DG
Sbjct: 82 RIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSN-----GVQFSRISPDG 136
Query: 151 EQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEI 210
E+G+PG+L V V YTL G +L V +A+A ++ATPVNL H+Y+NL G S +I E+
Sbjct: 137 EEGYPGELKVWVTYTLDGG-ELIVNYRAQA-SQATPVNLTNHSYFNLAGQASPNINDHEV 194
Query: 211 QIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKL-PHGYDINYVLEAGSGN 269
I A + PVD LIPTG + V+GT +D KP +G + +G+D N+ L+ G+
Sbjct: 195 TIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLK---GS 251
Query: 270 KMKK-VAVVHDKKSGIVMKLTTNQPGVQFYTANSLK-DVKGKGGFVYQPHAALCLETQAF 327
K K A VH SG V+++ T QPGVQFYT N L +KGK G VY H+ CLETQ +
Sbjct: 252 KEKHFCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNW 311
Query: 328 PDSVNHPNFPSTIVNPGETYKHHMVFKFSTS 358
PD+VN P FP ++ PGE Y H FKFS +
Sbjct: 312 PDAVNQPRFPPVLLRPGEEYDHTTWFKFSVA 342
>sp|Q5R8U1|GALM_PONAB Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1
Length = 342
Score = 248 bits (632), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 190/331 (57%), Gaps = 13/331 (3%)
Query: 31 YDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVAN 90
+ L+ V + +WG T+ ++ + D+ G+ DV LG+ + Y Y GA +GRVAN
Sbjct: 22 FQLQSDLLRVDIISWGCTITALEVKDRQGRSSDVVLGFAELEGYLQKQPYFGAVIGRVAN 81
Query: 91 RIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDG 150
RI F +DG Y L N+ N LHGG GF V+W N + F+ S DG
Sbjct: 82 RIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSN-----GIQFSRISPDG 136
Query: 151 EQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEI 210
E+G+PG+L V V YTL G +L V +A+A ++ATPVNL H+Y+NL G S +I E+
Sbjct: 137 EEGYPGELKVWVTYTLDGG-ELVVNYRAQA-SQATPVNLTNHSYFNLAGQGSPNIYDHEV 194
Query: 211 QIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKL-PHGYDINYVLEAGSGN 269
I A + PVD LIPTG + V+GT +D KP +G + +G+D N+ L+ G+
Sbjct: 195 TIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLK---GS 251
Query: 270 KMKK-VAVVHDKKSGIVMKLTTNQPGVQFYTANSLK-DVKGKGGFVYQPHAALCLETQAF 327
K K A VH SG V+++ T QPGVQFY N L +KGK G VY H+ CLETQ +
Sbjct: 252 KEKHFCARVHHAASGRVLEVYTTQPGVQFYMGNFLDGTLKGKNGAVYPKHSGFCLETQNW 311
Query: 328 PDSVNHPNFPSTIVNPGETYKHHMVFKFSTS 358
PD+VN P FP ++ PGE Y H FKFS +
Sbjct: 312 PDAVNQPRFPPVLLRPGEEYDHTTWFKFSVA 342
>sp|P05149|GALM_ACICA Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1
Length = 381
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 185/342 (54%), Gaps = 15/342 (4%)
Query: 28 VGVYDLKKGN-FSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYK----NDSSYIG 82
V +Y + N SV ++G + ++ PD GK ++ LG+D + Y+ + + G
Sbjct: 37 VDLYTMSNNNGVSVSFISFGGVITQILTPDAQGKQNNIVLGFDDLKGYEVTDTKEGIHFG 96
Query: 83 ATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVI 142
+GR ANRIG A+F+LDG Y L N G N LH G GF VW+V+ ++G
Sbjct: 97 GLIGRYANRIGNAKFSLDGKTYNLEKNNGPNSLHSGNPGFDKRVWQVKPLVSKGETVKAS 156
Query: 143 FAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNL--GGH 200
S +G+QGFPG L V V Y+L + ++ KAK ++ T VNL H+Y+NL G+
Sbjct: 157 LKLTSPNGDQGFPGKLDVEVIYSLSDQNEFKIEYKAKT-DQPTVVNLTNHSYFNLSGAGN 215
Query: 201 NSGDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRI----DKLP-- 254
N +L +Q+ A D +PTG I SV GTP+DF P + I +L
Sbjct: 216 NPYGVLDHVVQLNAGRILVTDQNSLPTGEIASVAGTPFDFRMPKAIVKDIRANNQQLAYG 275
Query: 255 HGYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANS-LKDVKGKGGFV 313
+GYD +V+ S K+ A+V D KS M++ T +P VQ YTA+ L ++ G G +
Sbjct: 276 YGYDQTWVINQKSQGKLNLAAIVVDPKSKRTMQVLTTEPSVQMYTADHLLGNIVGANGVL 335
Query: 314 YQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKF 355
Y+ AL LETQ FPDS N P FPST +NP +TY VFKF
Sbjct: 336 YRQADALALETQHFPDSPNQPTFPSTRLNPNQTYNSVTVFKF 377
>sp|P0A9C4|GALM_SHIFL Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1
Length = 346
Score = 199 bits (505), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 170/323 (52%), Gaps = 14/323 (4%)
Query: 40 VKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTL 99
V L +WGATL+S +P G + + LG S Y++ ++++GA++GR ANRI +++T
Sbjct: 28 VTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTF 87
Query: 100 DGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLS 159
DG L ++G N LHGG GF W++ + V+FA S DG+QGFPG+L
Sbjct: 88 DGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQNDR----QVLFALSSDDGDQGFPGNLG 143
Query: 160 VTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTP 219
TV Y L D ++ +T +A ++K PVN+ H Y+NL G S D+ + ++QI A + P
Sbjct: 144 ATVQYRLTDDNRISITYRA-TVDKPCPVNMTNHVYFNLDGEQS-DVRNHKLQILADEYLP 201
Query: 220 VDSQLIPTGHIVSVKGTPYDFLKPHTVGGRI-----DKLPHGYDINYVLEAGSGNKMKKV 274
VD IP + SV GT +DF + + GYD ++L+A G+ K
Sbjct: 202 VDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQA-KGDGKKVA 260
Query: 275 AVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHP 334
A V + +K+ T P +QFY+ N L +G Y L LE++ PDS NHP
Sbjct: 261 AHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHP 320
Query: 335 NFPS--TIVNPGETYKHHMVFKF 355
+P + PGE Y ++F
Sbjct: 321 EWPQPDCFLRPGEEYSSLTEYQF 343
>sp|P0A9C3|GALM_ECOLI Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1
SV=1
Length = 346
Score = 199 bits (505), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 170/323 (52%), Gaps = 14/323 (4%)
Query: 40 VKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTL 99
V L +WGATL+S +P G + + LG S Y++ ++++GA++GR ANRI +++T
Sbjct: 28 VTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTF 87
Query: 100 DGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLS 159
DG L ++G N LHGG GF W++ + V+FA S DG+QGFPG+L
Sbjct: 88 DGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQNDR----QVLFALSSDDGDQGFPGNLG 143
Query: 160 VTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTP 219
TV Y L D ++ +T +A ++K PVN+ H Y+NL G S D+ + ++QI A + P
Sbjct: 144 ATVQYRLTDDNRISITYRA-TVDKPCPVNMTNHVYFNLDGEQS-DVRNHKLQILADEYLP 201
Query: 220 VDSQLIPTGHIVSVKGTPYDFLKPHTVGGRI-----DKLPHGYDINYVLEAGSGNKMKKV 274
VD IP + SV GT +DF + + GYD ++L+A G+ K
Sbjct: 202 VDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQA-KGDGKKVA 260
Query: 275 AVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHP 334
A V + +K+ T P +QFY+ N L +G Y L LE++ PDS NHP
Sbjct: 261 AHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHP 320
Query: 335 NFPS--TIVNPGETYKHHMVFKF 355
+P + PGE Y ++F
Sbjct: 321 EWPQPDCFLRPGEEYSSLTEYQF 343
>sp|P21955|GALM_STRTR Aldose 1-epimerase OS=Streptococcus thermophilus GN=galM PE=3 SV=1
Length = 348
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 175/318 (55%), Gaps = 9/318 (2%)
Query: 46 GATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYK 105
GATL ++P + G L ++ LG+ DY ++ ++GRVA RIG A +T + + Y
Sbjct: 35 GATLQEFLVPMETGALKNIVLGFSDFEDYYKNNLCACQSIGRVAGRIGKASYTHNMVLYS 94
Query: 106 LVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYT 165
L NEG N LHGG G W N+ + F Y GFPGD++V++ Y
Sbjct: 95 LPKNEGDNCLHGGPKGMQVQNWNYVTNLNDDYV-ETKFIRRLYSSVDGFPGDVTVSISYR 153
Query: 166 LVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSEEIQIFASYFTPVDSQLI 225
L + +L + +A + ++T N H Y+NL + D+ S E+QI++ Y +DS+LI
Sbjct: 154 LNNNNRLTILFEAFDVTESTVFNPTNHVYFNLS--DKQDLSSHELQIYSDYRLELDSELI 211
Query: 226 PTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMKKVAVVHDKKSGIV 285
PTG ++V T YDF K + RI+ +G+D +V+ G+ + +K+VA++HDK+SG
Sbjct: 212 PTGQKINVDETNYDFRKTTDLLPRIEA-NNGFDDAFVVGGGTCDHVKEVAILHDKESGDG 270
Query: 286 MKLTTNQPGVQFYTANSLKD----VKGKGGFVYQPHAALCLETQAFPDSVNHPNFPSTIV 341
+++ +N+ G+ +T + ++D + KG + A+ +E Q PD+VNH F I+
Sbjct: 271 IEIFSNRNGLVIFTMDDIEDNIYFARDKGKMA-KRREAIAMEAQTLPDAVNHKGFGDIIL 329
Query: 342 NPGETYKHHMVFKFSTSA 359
+ G + + + F++ S+
Sbjct: 330 DKGHSVNYEIGFQYFNSS 347
>sp|P31765|GALM_HAEIN Aldose 1-epimerase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=galM PE=3 SV=2
Length = 340
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 172/326 (52%), Gaps = 20/326 (6%)
Query: 38 FSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQF 97
V+ +WGAT +S +P + L +V LG V++Y SY+GA+VGR ANRI AQF
Sbjct: 26 MRVQFMDWGATWLSCKVP-VNDTLREVLLGC-KVDNYPTHQSYLGASVGRYANRIANAQF 83
Query: 98 TLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQGFPGD 157
L+G KL +N+GK+ LHGG+ GF W ++ E V F+ HS DG+QGFPG+
Sbjct: 84 ELNGELIKLSSNQGKHQLHGGE-GFDKRRWNIQ----ECGENFVCFSLHSVDGDQGFPGN 138
Query: 158 LSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSG-DILSEEIQIFASY 216
+ V+V YTL GD +++ A +K T +NL HTY+NL G D+ +++ A +
Sbjct: 139 VDVSVTYTLTGDNSVKIEY-AGMCDKDTALNLTNHTYFNLENAEQGSDVREHTLRLNADF 197
Query: 217 FTPVDSQLIPTGHIVSVKGTPYDF-----LKPHTVGGRIDKLPHGYDINYVLEAGSGNKM 271
+ PVD++ IP + V T +DF +K + G + GYD ++++
Sbjct: 198 YLPVDNEGIPNSPLKHVVNTSFDFRIAKPIKQDFLQGD-QQATKGYDHSFIVNKAW---Q 253
Query: 272 KKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSV 331
K ++ + +++ T+Q +Q YT N L + G +Y + + LETQ PD+
Sbjct: 254 KPCVLLTSPTGDLSLEVRTSQAALQVYTGNYLAGTPTRNGELYADFSGIALETQCLPDTP 313
Query: 332 NHPNFPS--TIVNPGETYKHHMVFKF 355
NHP + + I G Y FKF
Sbjct: 314 NHPEWQNYGGIQKAGGRYYQWTEFKF 339
>sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GAL10 PE=1 SV=2
Length = 699
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 155/333 (46%), Gaps = 31/333 (9%)
Query: 38 FSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKN-DSSYIGATVGRVANRIGGAQ 96
F N GA+++ + + + V LGY++ Y N DS+YIGAT+GR ANRI +
Sbjct: 384 FQATFANLGASIVDLKVNGQ-----SVVLGYENEEGYLNPDSAYIGATIGRYANRISKGK 438
Query: 97 FTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYHSYDGEQG--F 154
F+L Y+L N G N H F + QN Y D E+ F
Sbjct: 439 FSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTA-EYMLIDNEKDTEF 497
Query: 155 PGDLSVTVGYTL-VGDKQLRVTMKAK-ALNKATPVNLAQHTYWNLGGHNSGDILSEEIQI 212
PGDL VT+ YT+ V K L + K K +ATP+NL H+Y+NL I EI +
Sbjct: 498 PGDLLVTIQYTVNVAQKSLEMVYKGKLTAGEATPINLTNHSYFNLNKPYGDTIEGTEIMV 557
Query: 213 FASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGS----- 267
+ VD +IPTG+IV + ++ KP +G K P +D +V++ +
Sbjct: 558 RSKKSVDVDKNMIPTGNIVDREIATFNSTKPTVLG---PKNPQ-FDCCFVVDENAKPSQI 613
Query: 268 ---GNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLET 324
N++ + S I +++ + +P QFYT + L G Y+ +E
Sbjct: 614 NTLNNELTLIVKAFHPDSNITLEVLSTEPTYQFYTGDFL-----SAG--YEARQGFAIEP 666
Query: 325 QAFPDSVNHPNFPSTI-VNPGETYKHHMVFKFS 356
+ D++N N+ + + GETY +V++FS
Sbjct: 667 GRYIDAINQENWKDCVTLKNGETYGSKIVYRFS 699
>sp|P09609|GAL10_KLULA Bifunctional protein GAL10 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=GAL10 PE=2 SV=2
Length = 688
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/343 (29%), Positives = 167/343 (48%), Gaps = 34/343 (9%)
Query: 30 VYDLKKG-NFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSS-YIGATVGR 87
V L KG +F VKL N GAT++ +V+ +G V D+ +YK+ S+ + GATVG
Sbjct: 364 VVSLGKGTSFEVKLANLGATIVDIVV---NG--CSVVASLDNETEYKDQSNPFFGATVGP 418
Query: 88 VANRIGGAQFTLDGIHYKL-VANEGKNMLHGGKIGFSDVVWKVEKYQN-EGHAPHVIFAY 145
ANRI F ++G +L V+ E N++H G + + +N E H F Y
Sbjct: 419 YANRIANGTFEINGKRIQLTVSKEDGNVVHSGINSYHSKKFLGPIVKNPEAHIWTADFKY 478
Query: 146 HSYDGEQGFPGDLSVTVGYTLVGDKQ-LRVTMKAKALNK-ATPVNLAQHTYWNLGGHNSG 203
D E FP LS V Y + +K+ L V ++K + +T N+ HTY+NL N
Sbjct: 479 --VDEETEFPARLSTLVRYKVDSEKKTLTVEYESKVAGQGSTGANITNHTYFNLNKFNEA 536
Query: 204 DILSEEIQIFASYFTPVDSQLIPTG------HIVSVKGTPYDFLKPHTV--GGRIDKLPH 255
I ++Q+ + V+++L+PTG + + +P + + V + LP
Sbjct: 537 TIKGSKVQLIDNTGLEVNNKLLPTGNLKKYTQVATFNDSPTEITEKEPVLDFCFVSGLPA 596
Query: 256 GYDINYVLEAGSGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQ 315
D + + V + ++ + + +++ T +P Q YT + + DVK K Y+
Sbjct: 597 KLDTR-------SSPLTPVFKLSNEDAKLEVEVATTEPTFQVYTGDYV-DVKDK----YE 644
Query: 316 PHAALCLETQAFPDSVNHPNFPSTIVNP-GETYKHHMVFKFST 357
A +C E + D+VN+P + S++V P GETY H + + F T
Sbjct: 645 NRAGICCEPGRYIDAVNNPEWKSSVVLPAGETYGHKLSYTFRT 687
>sp|P40801|GAL10_PACTA Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2
SV=1
Length = 689
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/343 (29%), Positives = 162/343 (47%), Gaps = 49/343 (14%)
Query: 36 GNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDY-KNDSSYIGATVGRVANRIGG 94
G F V ++N GAT+++ L I + LG+D++ Y + D+ + GAT+GRVANRI
Sbjct: 372 GKFEVSISNHGATIVAAKLNG-----IKLNLGFDNLKGYLREDNPFFGATIGRVANRISK 426
Query: 95 AQFTLDGIHYKLVANE-GKNMLHGGKIGFSDVVW--KVEKYQNEGHAPHVIFAYHSYDGE 151
++G HY++ NE + LHGG G++ + + K + + F DG
Sbjct: 427 GDLLINGTHYQVGLNELHRTSLHGGTYGYNKRTFLGPIVKTNEKEKETTMEFVLIDLDGT 486
Query: 152 QGFPGDLSVTVGYTL----VGDKQLRVTMKAKALNK----ATPVNLAQHTYWNLGGHNSG 203
+G+PGD+ V YT+ VG +L + +AK L + +T V+L H+YWN+G N
Sbjct: 487 EGYPGDVETKVIYTVRDTGVGG-ELGIEYEAKLLEESGRDSTAVSLTNHSYWNIG--NQP 543
Query: 204 DILSEEIQIFASYF---TPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDIN 260
I I++ ++ P+DS PTG IV+ T D +G P G +
Sbjct: 544 SIEGTHIKLVSNKHLESNPLDST--PTGKIVT--STDLDSQNSAKLG------PDGPVFD 593
Query: 261 YVLEAGSGNK-------MKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFV 313
Y +K ++ VA K+ I T +P QFYT + + DV G V
Sbjct: 594 YCFVTKQQDKLDTRNDELRVVATATHPKTRIAFTTLTTEPAFQFYTGDGV-DVAG----V 648
Query: 314 YQPHAALCLETQAFPDSVNHPNFPSTIVNPGETYKHHMVFKFS 356
+ + CLE + + +P + +N GE Y + +++F
Sbjct: 649 FTKRSGFCLEASRY---IYNPKW-FIPLNKGEVYGSYTIYRFE 687
>sp|P53757|YN9A_YEAST Uncharacterized isomerase YNR071C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YNR071C PE=1 SV=1
Length = 342
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 161/346 (46%), Gaps = 36/346 (10%)
Query: 28 VGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGR 87
+ + D KK F + GATL+ + + +G+ V GY +V DY D + +GATVGR
Sbjct: 13 ITIGDEKK--FQATIAPLGATLVDLKV---NGQ--SVVQGYSNVQDYLTDGNMMGATVGR 65
Query: 88 VANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVI----F 143
ANRI F+LD +KL N N H + +K +N +V+
Sbjct: 66 YANRIAKGVFSLDDGPHKLTVNNCGNTNHSSISSLNLKQYKASPVENPSKGVYVVEFKLL 125
Query: 144 AYHSYDGEQGFPGDLSVTVGYTL-VGDKQLRVTMKAKALN-KATPVNLAQHTYWNLGGHN 201
H+ FPGDL VTV YTL V + L + +A+ + ATP+N+ H+Y+NL
Sbjct: 126 DDHTQPNPNEFPGDLEVTVKYTLNVAEMTLDMEYQAQLVRGDATPINMTNHSYFNLNKVK 185
Query: 202 S-GDILSEEIQIFASYFTPV-DSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDI 259
S I E+++ ++ V + L+PTG I+ +D KP + + P +D
Sbjct: 186 SEKSIRGTEVKVCSNKSLEVTEGALLPTGKIIERNIATFDSTKPTVLH---EDTP-VFDC 241
Query: 260 NYVLEAG---------SGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKG 310
++++A S NK+ V + +S I +++T +P V YT ++L G
Sbjct: 242 TFIIDANKDLKTTDSVSVNKLVPVFKAYHPESHIKFEVSTTEPTVHLYTGDNL-----CG 296
Query: 311 GFVYQPHAALCLETQAFPDSVNHPNFP-STIVNPGETYKHHMVFKF 355
FV P + ++ + D++N + ++ GE Y +KF
Sbjct: 297 KFV--PRSGFAVQQGRYVDAINRDEWRGCVLLKRGEVYTSKTQYKF 340
>sp|P38893|YH10_YEAST Uncharacterized isomerase YHR210C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YHR210C PE=3 SV=1
Length = 341
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 165/347 (47%), Gaps = 37/347 (10%)
Query: 28 VGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDS-SYIGATVG 86
+ + D KK ++ GATL+ + + ++ + LGY ++ Y +D +YIGATVG
Sbjct: 13 ITIGDAKK--LQATISELGATLLDLKVNNES-----IVLGYPDIHGYISDGYNYIGATVG 65
Query: 87 RVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHVIFAYH 146
R ANRI F+++ ++L N N H F +K K QN +++ +
Sbjct: 66 RYANRIYKGMFSMEDGPHQLTVNNCGNTNHSSISSFHLKKYKASKVQNPLDDLYIV-EFT 124
Query: 147 SYDGE---QGFPGDLSVTVGYTL-VGDKQLRVTMKAKALN-KATPVNLAQHTYWNLGG-H 200
D FPGDL+V + YTL V D L + +AK ++ +ATP+N+ HTY+NL
Sbjct: 125 LLDDRTLPNEFPGDLAVNLKYTLNVADMTLDLEYEAKLVSGEATPINMTNHTYFNLNKTM 184
Query: 201 NSGDILSEEIQIFASYFTPV-DSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDI 259
+ I E+++ + V + LIPTG IV K +D KP + D P YD
Sbjct: 185 DKKSISGTEVRLCSDKSLEVSEGALIPTGKIVQRKIATFDSSKPTILQ---DDGPI-YDY 240
Query: 260 NYVLEAG---------SGNKMKKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKG 310
++++ S NK+ + S + ++++T +P V FYT ++L D
Sbjct: 241 AFIVDENKNLKTTDSVSVNKLVPAFKAYHPASRLSLEVSTTEPTVLFYTGDNLCD----- 295
Query: 311 GFVYQPHAALCLETQAFPDSVNHPNFPSTI-VNPGETYKHHMVFKFS 356
GF P + +E + D++N + + + GE Y ++F+
Sbjct: 296 GFT--PRSGFAVEQGRYVDAINRDGWRDCVLLRRGEVYTSKTRYRFA 340
>sp|Q9HDU3|GAL10_SCHPO Bifunctional protein gal10 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=gal10 PE=3 SV=1
Length = 713
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 152/355 (42%), Gaps = 64/355 (18%)
Query: 26 NAVGVYDLKK-------GNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYK-ND 77
N +G+ D K + V + N+GA + +V + ++ G++ + YK +
Sbjct: 359 NTLGIMDYKNRLHTICFQDLEVSIANYGALVQAVRYKGR-----NLVNGFNDFSRYKLKE 413
Query: 78 SSYIGATVGRVANRIGGAQFTLDGIHYKLVANE-GKNMLHGGKIGFSD------VVWKVE 130
+ + GAT+GR ANRI QF +DG Y L NE K LHGG GF + + E
Sbjct: 414 NPFFGATIGRFANRIANGQFEVDGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPIARQYE 473
Query: 131 KYQNEGHAPHVIFAYHSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKA-----KALNKAT 185
Y + F DG GFP DL V YT + + L + K+ LN T
Sbjct: 474 DYNT------LEFILVDKDGNNGFPSDLETLVKYT-IKNNSLEIEYKSVIPEYSKLN-VT 525
Query: 186 PVNLAQHTYWNLGGHN---SGDILSEEIQIFASYFTPVDSQL-IPTGHIVSVKGTPYDFL 241
VNL H+YWNL N G I+ ++ V+S+ +PTG IV + D
Sbjct: 526 AVNLTNHSYWNLASPNKTIDGTIIKSTTNVYLK----VNSETSLPTGDIVEWQN---DIT 578
Query: 242 KPHTVGGRIDKLPHGYDINYVLEAGSGN--------KMKKVAVVHDKKSGIVMKLTTNQP 293
KP + I +D ++++ + +K + V + + ++T +P
Sbjct: 579 KPTKLDPNI-----SFDNCFIVDREASKFCLDTRKYSLKNIVEVIHPSVPVKLVVSTTEP 633
Query: 294 GVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSVNHPNFP-STIVNPGETY 347
Q YT + G +Q + C+ET F +++N+ + I+ GE Y
Sbjct: 634 AFQLYTGD------GNDICEFQSRSGFCVETGRFINALNNEKWSKQVILRKGEVY 682
>sp|Q00053|GALM_LACHE Aldose 1-epimerase (Fragment) OS=Lactobacillus helveticus GN=galM
PE=3 SV=1
Length = 129
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 40 VKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTL 99
VK+ N+GATL V+L D+ ++ L +S DY + +Y+G TVGR+A R+ Q+
Sbjct: 29 VKVLNYGATLEKVLLNDE-----NMILSLNSPADYSQERNYLGGTVGRIAGRVRKGQWRH 83
Query: 100 DGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHA 138
++L N+G+N +HGG IG VW + +E A
Sbjct: 84 GLETHQLPINDGENHIHGG-IGTDTEVWDFKPSCSENSA 121
>sp|P20345|VG12_BPPH2 Pre-neck appendage protein OS=Bacillus phage phi29 GN=12 PE=1 SV=1
Length = 854
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 213 FASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMK 272
FA YF +D Q+I TG++V+++ G+I K G I V+ +G +
Sbjct: 693 FAEYFESLDGQVIETGYLVTLE------------KGKIRKAEKGEKIIGVISETAGFVLG 740
Query: 273 KV------AVVHDKKSGIVMKLTTNQPGVQF 297
+ AV+ ++ GI+ + T + GV+F
Sbjct: 741 ESSFEWQGAVLKNEFGGIIYEEVTTEDGVKF 771
>sp|Q6C423|JHD1_YARLI JmjC domain-containing histone demethylation protein 1 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=JHD1 PE=3 SV=1
Length = 510
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 183 KATPVNLAQHTYWNLGGHNS----GDILSEEIQIFASYFTPVDSQLIPTGHIVSVKGTPY 238
+ T NLA ++ W L + D+LS + I+ + +P D+ IP+G I +V +P
Sbjct: 281 RPTARNLAAYSQWCLSADQNVVFLPDVLSPDSDIYTVHLSPGDTMYIPSGWIHAVH-SPQ 339
Query: 239 D-------FLKPHTVGGRID 251
D F+ P + +ID
Sbjct: 340 DSLVVGGNFITPLNMKTQID 359
>sp|P07537|VG12_BPPZA Pre-neck appendage protein OS=Bacillus phage PZA GN=12 PE=4 SV=1
Length = 854
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Query: 213 FASYFTPVDSQLIPTGHIVSVKGTPYDFLKPHTVGGRIDKLPHGYDINYVLEAGSGNKMK 272
FA YF +D Q+I TG++V++ G+I K G I V+ +G +
Sbjct: 693 FAEYFESLDGQVIETGYLVTLD------------KGKIRKAEKGEKIIGVISETAGFVLG 740
Query: 273 KV------AVVHDKKSGIVMKLTTNQPGVQF 297
+ AV+ ++ GIV + T + GV+F
Sbjct: 741 ESSFEWQGAVLKNEFGGIVYEEVTTEDGVKF 771
>sp|B3EQC0|MURD_CHLPB UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Chlorobium
phaeobacteroides (strain BS1) GN=murD PE=3 SV=1
Length = 466
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 272 KKVAVVHDKKSGIVMKLTTNQPGVQFYTANSLKDVKGKGGFVYQPHAALCLETQAFPDSV 331
K+V+++ K+SGI L Q G Y ++ ++ G + H + E + D +
Sbjct: 9 KRVSIIGAKRSGIAAALLLQQRGATVYVSD--REPVGDAERAFLEHHGIAFEEEGHTDRI 66
Query: 332 NHPNFPSTIVNPG 344
+F ++V+PG
Sbjct: 67 LEADF--SVVSPG 77
>sp|B5YF45|FMT_DICT6 Methionyl-tRNA formyltransferase OS=Dictyoglomus thermophilum
(strain ATCC 35947 / DSM 3960 / H-6-12) GN=fmt PE=3 SV=1
Length = 312
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 32 DLKKGNFSVKLTNWGATLISVVLP-DKHGKLIDV 64
D KG S+KL N GA L+ VLP K GKLI V
Sbjct: 158 DDDKGTLSIKLANLGADLLLEVLPLIKEGKLIPV 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,166,511
Number of Sequences: 539616
Number of extensions: 6501488
Number of successful extensions: 13786
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 13702
Number of HSP's gapped (non-prelim): 27
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)