Query 017995
Match_columns 362
No_of_seqs 310 out of 2816
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:14:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02940 riboflavin kinase 100.0 3.2E-74 7E-79 556.5 38.2 356 2-357 25-380 (382)
2 TIGR00083 ribF riboflavin kina 100.0 7.8E-50 1.7E-54 369.0 21.0 223 74-341 55-288 (288)
3 PRK05627 bifunctional riboflav 100.0 2E-47 4.3E-52 356.4 23.3 223 74-341 71-304 (305)
4 PF01687 Flavokinase: Riboflav 100.0 6.2E-48 1.3E-52 312.4 12.3 125 211-341 1-125 (125)
5 COG0196 RibF FAD synthase [Coe 100.0 9.7E-47 2.1E-51 347.5 19.2 224 74-341 73-304 (304)
6 KOG3110 Riboflavin kinase [Coe 100.0 1E-41 2.2E-46 267.4 12.8 149 208-356 5-153 (153)
7 PRK07143 hypothetical protein; 100.0 1.2E-36 2.7E-41 279.3 19.6 200 73-342 65-274 (279)
8 PLN02811 hydrolase 99.9 9.3E-25 2E-29 196.7 21.6 195 2-196 8-209 (220)
9 COG0637 Predicted phosphatase/ 99.9 4.8E-24 1E-28 192.0 18.7 171 2-173 16-188 (221)
10 PLN03243 haloacid dehalogenase 99.9 5E-24 1.1E-28 196.2 18.2 168 4-172 41-210 (260)
11 TIGR01449 PGP_bact 2-phosphogl 99.9 1.3E-23 2.9E-28 187.8 20.3 191 2-193 12-209 (213)
12 PLN02770 haloacid dehalogenase 99.9 8.7E-24 1.9E-28 193.8 18.9 189 2-193 36-231 (248)
13 PLN02575 haloacid dehalogenase 99.9 1.1E-23 2.4E-28 201.1 19.3 192 2-195 145-339 (381)
14 PRK10826 2-deoxyglucose-6-phos 99.9 2.5E-23 5.4E-28 187.6 20.6 191 2-193 21-215 (222)
15 TIGR03351 PhnX-like phosphonat 99.9 1.6E-23 3.4E-28 188.5 18.5 191 2-193 15-215 (220)
16 COG0546 Gph Predicted phosphat 99.9 3.5E-23 7.5E-28 186.5 18.6 190 2-193 18-213 (220)
17 PRK13226 phosphoglycolate phos 99.9 4.9E-23 1.1E-27 186.6 18.0 190 2-193 26-220 (229)
18 TIGR01422 phosphonatase phosph 99.9 8.8E-23 1.9E-27 187.7 19.5 169 6-175 21-205 (253)
19 PRK10725 fructose-1-P/6-phosph 99.9 1.9E-22 4.2E-27 176.8 20.4 168 2-172 19-187 (188)
20 PRK13288 pyrophosphatase PpaX; 99.9 7.2E-23 1.6E-27 183.5 17.8 186 2-193 17-206 (214)
21 PRK10563 6-phosphogluconate ph 99.9 1.5E-22 3.3E-27 182.2 19.8 188 2-193 18-208 (221)
22 TIGR01990 bPGM beta-phosphoglu 99.9 2.5E-22 5.5E-27 175.5 19.7 167 2-171 13-185 (185)
23 PRK11587 putative phosphatase; 99.9 4E-22 8.6E-27 179.3 18.0 186 2-195 17-205 (218)
24 KOG2914 Predicted haloacid-hal 99.9 8.3E-22 1.8E-26 174.9 18.7 170 2-172 24-197 (222)
25 PRK13478 phosphonoacetaldehyde 99.9 1.1E-21 2.4E-26 181.9 20.2 169 6-175 23-207 (267)
26 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 2E-21 4.4E-26 169.7 19.6 166 2-170 15-185 (185)
27 TIGR01454 AHBA_synth_RP 3-amin 99.9 2.1E-21 4.6E-26 172.8 18.8 184 2-193 12-199 (205)
28 TIGR02253 CTE7 HAD superfamily 99.9 1.3E-21 2.9E-26 175.9 16.1 189 3-192 17-219 (221)
29 PRK13223 phosphoglycolate phos 99.9 6.9E-21 1.5E-25 176.8 18.4 191 2-193 27-225 (272)
30 PRK13225 phosphoglycolate phos 99.9 1.6E-20 3.5E-25 174.0 18.1 184 2-193 76-263 (273)
31 PRK13222 phosphoglycolate phos 99.9 5.8E-20 1.3E-24 165.7 20.7 191 2-193 20-217 (226)
32 PF13419 HAD_2: Haloacid dehal 99.8 1.5E-20 3.2E-25 161.6 13.6 162 4-170 14-176 (176)
33 TIGR02254 YjjG/YfnB HAD superf 99.8 6.6E-20 1.4E-24 165.0 18.3 186 2-193 15-220 (224)
34 PLN02919 haloacid dehalogenase 99.8 7.1E-20 1.5E-24 197.1 21.3 192 2-194 89-286 (1057)
35 TIGR02252 DREG-2 REG-2-like, H 99.8 6.7E-20 1.4E-24 162.8 17.1 165 2-169 14-203 (203)
36 PLN02779 haloacid dehalogenase 99.8 1.5E-19 3.2E-24 169.0 19.6 192 2-196 54-271 (286)
37 PRK09449 dUMP phosphatase; Pro 99.8 9.5E-20 2.1E-24 164.3 16.9 180 6-193 19-218 (224)
38 PRK06698 bifunctional 5'-methy 99.8 1.3E-19 2.7E-24 180.5 18.8 187 2-193 255-449 (459)
39 TIGR01428 HAD_type_II 2-haloal 99.8 2.3E-19 5.1E-24 158.7 16.8 133 35-173 62-194 (198)
40 TIGR01548 HAD-SF-IA-hyp1 haloa 99.8 1.5E-18 3.3E-23 153.5 18.0 160 2-163 14-197 (197)
41 PRK09456 ?-D-glucose-1-phospha 99.8 9.1E-19 2E-23 155.2 16.1 136 32-173 52-187 (199)
42 PRK14988 GMP/IMP nucleotidase; 99.8 1.6E-18 3.5E-23 156.5 16.7 107 67-174 90-197 (224)
43 TIGR01509 HAD-SF-IA-v3 haloaci 99.8 7.3E-18 1.6E-22 146.7 17.7 135 34-170 41-183 (183)
44 TIGR02247 HAD-1A3-hyp Epoxide 99.8 4.9E-18 1.1E-22 151.7 15.5 104 68-172 92-197 (211)
45 PRK10748 flavin mononucleotide 99.8 9.9E-18 2.1E-22 152.8 13.8 150 37-193 79-234 (238)
46 TIGR01993 Pyr-5-nucltdase pyri 99.8 1.8E-17 4E-22 144.9 14.2 156 3-170 15-184 (184)
47 TIGR00213 GmhB_yaeD D,D-heptos 99.7 1.3E-17 2.9E-22 144.9 10.8 124 67-193 23-174 (176)
48 TIGR01549 HAD-SF-IA-v1 haloaci 99.7 1.7E-16 3.8E-21 134.5 16.4 142 2-164 13-154 (154)
49 PRK06769 hypothetical protein; 99.7 2.4E-17 5.2E-22 142.9 10.1 125 68-193 26-167 (173)
50 COG1011 Predicted hydrolase (H 99.7 2.2E-16 4.8E-21 142.4 14.6 123 68-192 97-221 (229)
51 TIGR01493 HAD-SF-IA-v2 Haloaci 99.7 8.8E-17 1.9E-21 139.3 10.6 149 2-163 13-175 (175)
52 PRK08942 D,D-heptose 1,7-bisph 99.7 1.1E-16 2.4E-21 139.7 11.0 128 63-193 22-172 (181)
53 TIGR01261 hisB_Nterm histidino 99.7 1.3E-16 2.7E-21 136.4 10.4 105 67-174 26-150 (161)
54 TIGR01691 enolase-ppase 2,3-di 99.7 1.9E-15 4.2E-20 135.4 18.1 113 58-173 83-198 (220)
55 TIGR01656 Histidinol-ppas hist 99.7 1.2E-16 2.5E-21 134.8 8.9 104 67-172 24-146 (147)
56 PHA02597 30.2 hypothetical pro 99.7 6.8E-16 1.5E-20 136.4 13.8 171 7-193 17-194 (197)
57 TIGR01685 MDP-1 magnesium-depe 99.7 2E-16 4.4E-21 136.2 8.9 107 67-174 42-160 (174)
58 KOG3085 Predicted hydrolase (H 99.6 2.1E-15 4.5E-20 134.7 12.2 165 6-172 25-214 (237)
59 TIGR01662 HAD-SF-IIIA HAD-supe 99.6 5.1E-15 1.1E-19 122.4 11.5 100 68-172 23-132 (132)
60 TIGR01664 DNA-3'-Pase DNA 3'-p 99.5 2.3E-14 5E-19 123.2 9.9 96 71-169 43-160 (166)
61 TIGR01668 YqeG_hyp_ppase HAD s 99.5 7.4E-14 1.6E-18 120.6 11.5 102 68-179 41-144 (170)
62 PRK05446 imidazole glycerol-ph 99.5 1.3E-13 2.9E-18 131.2 12.2 107 63-172 23-149 (354)
63 smart00577 CPDc catalytic doma 99.5 2.7E-14 5.9E-19 120.5 6.5 96 68-168 43-139 (148)
64 PHA02530 pseT polynucleotide k 99.5 1.6E-13 3.4E-18 129.3 10.5 104 69-173 186-298 (300)
65 TIGR00338 serB phosphoserine p 99.5 9E-13 1.9E-17 118.3 13.8 102 67-169 82-193 (219)
66 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.4 6.3E-13 1.4E-17 117.4 11.4 106 66-172 76-191 (201)
67 TIGR01672 AphA HAD superfamily 99.4 2.8E-12 6.1E-17 116.0 13.5 110 57-174 100-214 (237)
68 PLN02954 phosphoserine phospha 99.4 6.7E-12 1.4E-16 113.1 15.5 174 8-192 27-218 (224)
69 TIGR01681 HAD-SF-IIIC HAD-supe 99.4 1.3E-12 2.8E-17 107.5 7.3 88 70-162 29-126 (128)
70 cd01427 HAD_like Haloacid deha 99.4 4.8E-12 1E-16 103.6 10.7 103 67-170 21-139 (139)
71 PRK09552 mtnX 2-hydroxy-3-keto 99.3 2.2E-11 4.7E-16 109.6 13.4 100 67-168 71-184 (219)
72 PRK11133 serB phosphoserine ph 99.3 2.1E-11 4.5E-16 115.5 13.7 102 67-169 178-289 (322)
73 TIGR01452 PGP_euk phosphoglyco 99.3 6.7E-13 1.5E-17 123.8 2.9 105 71-176 144-252 (279)
74 PRK11009 aphA acid phosphatase 99.3 3.7E-11 7.9E-16 108.7 13.6 109 57-175 100-215 (237)
75 COG2179 Predicted hydrolase of 99.3 1.8E-11 3.9E-16 102.0 10.1 101 67-177 43-144 (175)
76 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.3 1.6E-12 3.5E-17 119.7 2.7 121 71-192 121-249 (257)
77 TIGR01489 DKMTPPase-SF 2,3-dik 99.2 2.3E-10 4.9E-15 99.8 14.4 97 67-167 69-185 (188)
78 PF13242 Hydrolase_like: HAD-h 99.2 1.5E-11 3.3E-16 91.3 5.7 68 125-192 2-74 (75)
79 TIGR03333 salvage_mtnX 2-hydro 99.2 2.3E-10 5E-15 102.6 13.9 97 68-165 68-177 (214)
80 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.2 9.7E-12 2.1E-16 113.6 5.0 98 72-171 140-241 (242)
81 TIGR02726 phenyl_P_delta pheny 99.2 5.7E-11 1.2E-15 102.1 7.9 85 78-172 42-126 (169)
82 KOG3109 Haloacid dehalogenase- 99.2 6.1E-10 1.3E-14 96.7 14.1 152 9-172 40-206 (244)
83 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.2 6.9E-10 1.5E-14 98.2 13.5 121 50-172 68-199 (202)
84 PRK13582 thrH phosphoserine ph 99.1 3.4E-10 7.3E-15 100.5 10.7 100 67-168 65-168 (205)
85 PF00702 Hydrolase: haloacid d 99.1 1.7E-10 3.6E-15 102.6 8.2 91 68-164 125-215 (215)
86 TIGR01670 YrbI-phosphatas 3-de 99.1 2E-10 4.3E-15 97.6 8.1 84 78-172 36-119 (154)
87 TIGR01686 FkbH FkbH-like domai 99.1 2.7E-10 5.9E-15 108.3 9.6 91 70-166 31-125 (320)
88 TIGR02244 HAD-IG-Ncltidse HAD 99.1 2.4E-09 5.2E-14 101.5 15.4 104 68-172 182-324 (343)
89 TIGR01544 HAD-SF-IE haloacid d 99.1 7.7E-10 1.7E-14 101.8 11.4 95 68-163 119-230 (277)
90 TIGR01663 PNK-3'Pase polynucle 99.1 5.3E-10 1.2E-14 111.8 9.7 92 71-165 198-305 (526)
91 COG0241 HisB Histidinol phosph 99.0 2.5E-09 5.3E-14 92.1 10.7 105 66-173 27-151 (181)
92 TIGR02137 HSK-PSP phosphoserin 99.0 2.2E-08 4.8E-13 88.9 16.7 100 67-172 65-172 (203)
93 cd02064 FAD_synthetase_N FAD s 99.0 1.7E-09 3.7E-14 94.2 9.2 113 74-225 57-180 (180)
94 PRK09484 3-deoxy-D-manno-octul 99.0 2.6E-09 5.7E-14 93.3 8.7 82 77-168 55-136 (183)
95 TIGR01488 HAD-SF-IB Haloacid D 98.9 7.1E-09 1.5E-13 89.6 9.6 96 67-163 70-177 (177)
96 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.9 6.4E-10 1.4E-14 102.0 2.4 104 70-175 121-227 (249)
97 PLN02645 phosphoglycolate phos 98.9 5.1E-10 1.1E-14 106.0 1.8 115 76-192 176-302 (311)
98 PTZ00445 p36-lilke protein; Pr 98.8 3.8E-08 8.1E-13 86.0 11.2 101 71-172 76-206 (219)
99 TIGR02251 HIF-SF_euk Dullard-l 98.8 2.1E-09 4.6E-14 92.0 3.3 99 68-171 40-139 (162)
100 COG0647 NagD Predicted sugar p 98.8 5.4E-08 1.2E-12 89.3 11.9 70 124-193 187-261 (269)
101 PRK08238 hypothetical protein; 98.7 1.8E-07 3.9E-12 93.3 12.2 97 68-172 70-166 (479)
102 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.7 4E-08 8.8E-13 89.7 7.1 93 67-165 21-116 (242)
103 COG0560 SerB Phosphoserine pho 98.7 8.3E-07 1.8E-11 79.3 14.9 103 69-172 76-188 (212)
104 PRK10444 UMP phosphatase; Prov 98.6 2E-08 4.2E-13 92.0 3.3 77 117-193 164-245 (248)
105 PF12689 Acid_PPase: Acid Phos 98.6 4.3E-07 9.2E-12 77.8 10.2 103 67-175 42-155 (169)
106 TIGR01525 ATPase-IB_hvy heavy 98.5 2.1E-07 4.6E-12 95.1 8.2 88 68-167 382-470 (556)
107 COG4229 Predicted enolase-phos 98.5 8.6E-06 1.9E-10 69.1 14.4 102 68-172 101-205 (229)
108 TIGR01512 ATPase-IB2_Cd heavy 98.4 9.5E-07 2.1E-11 89.9 8.9 88 68-167 360-448 (536)
109 PF08645 PNK3P: Polynucleotide 98.4 1.2E-06 2.7E-11 74.6 7.8 98 68-168 26-153 (159)
110 PRK11590 hypothetical protein; 98.4 1.7E-05 3.7E-10 70.9 15.2 164 4-172 20-204 (211)
111 KOG3040 Predicted sugar phosph 98.2 4.4E-06 9.5E-11 72.4 8.1 68 125-192 179-251 (262)
112 TIGR01511 ATPase-IB1_Cu copper 98.2 6.7E-06 1.4E-10 84.2 9.3 87 68-167 403-489 (562)
113 TIGR01460 HAD-SF-IIA Haloacid 98.2 1.9E-06 4E-11 78.5 4.3 49 124-172 185-235 (236)
114 TIGR01684 viral_ppase viral ph 98.1 7.7E-06 1.7E-10 75.5 7.3 64 69-133 144-208 (301)
115 KOG2882 p-Nitrophenyl phosphat 98.1 2.8E-06 6.1E-11 77.8 3.4 102 72-175 167-273 (306)
116 PF09419 PGP_phosphatase: Mito 98.0 5E-05 1.1E-09 64.9 10.6 96 67-173 56-166 (168)
117 PRK10671 copA copper exporting 98.0 2E-05 4.3E-10 84.5 9.4 87 69-167 649-735 (834)
118 TIGR01522 ATPase-IIA2_Ca golgi 98.0 2.4E-05 5.1E-10 84.3 8.9 98 70-168 528-641 (884)
119 TIGR01456 CECR5 HAD-superfamil 97.9 9.8E-06 2.1E-10 77.2 5.0 69 124-192 230-315 (321)
120 KOG1615 Phosphoserine phosphat 97.9 0.0002 4.2E-09 61.7 11.5 93 67-162 85-191 (227)
121 PF06888 Put_Phosphatase: Puta 97.9 0.00017 3.6E-09 65.2 11.6 106 65-171 66-196 (234)
122 TIGR01545 YfhB_g-proteo haloac 97.9 0.00029 6.3E-09 62.9 12.8 103 68-172 92-203 (210)
123 TIGR02250 FCP1_euk FCP1-like p 97.8 4.1E-05 8.9E-10 65.0 6.0 83 68-158 56-141 (156)
124 TIGR01533 lipo_e_P4 5'-nucleot 97.8 0.00014 3E-09 67.1 9.9 85 67-159 115-203 (266)
125 PF12710 HAD: haloacid dehalog 97.8 9E-05 1.9E-09 64.5 7.9 85 73-161 92-192 (192)
126 COG4087 Soluble P-type ATPase 97.7 0.00026 5.6E-09 57.0 8.6 115 67-192 27-141 (152)
127 PRK10530 pyridoxal phosphate ( 97.7 8.7E-05 1.9E-09 68.6 6.7 94 70-168 137-239 (272)
128 PLN02645 phosphoglycolate phos 97.6 0.0004 8.6E-09 65.9 10.3 91 69-169 43-136 (311)
129 PF05761 5_nucleotid: 5' nucle 97.5 0.00037 8E-09 68.9 9.1 104 69-172 182-325 (448)
130 COG4359 Uncharacterized conser 97.5 0.00076 1.7E-08 57.6 9.6 93 67-164 70-179 (220)
131 PRK11033 zntA zinc/cadmium/mer 97.5 0.00054 1.2E-08 72.5 10.7 87 69-169 567-653 (741)
132 PHA03398 viral phosphatase sup 97.5 0.00024 5.3E-09 65.7 6.8 55 69-124 146-201 (303)
133 COG4996 Predicted phosphatase 97.5 0.00035 7.5E-09 56.3 6.3 85 67-159 38-131 (164)
134 COG1778 Low specificity phosph 97.4 0.00024 5.2E-09 59.1 5.1 84 79-172 44-127 (170)
135 cd02169 Citrate_lyase_ligase C 97.3 0.00027 5.8E-09 66.3 4.6 80 91-197 205-284 (297)
136 KOG2630 Enolase-phosphatase E- 97.1 0.0036 7.7E-08 55.4 9.0 104 68-172 121-225 (254)
137 TIGR01116 ATPase-IIA1_Ca sarco 97.0 0.0025 5.5E-08 69.1 8.7 100 69-169 536-655 (917)
138 TIGR02463 MPGP_rel mannosyl-3- 96.9 0.0052 1.1E-07 54.9 8.8 71 93-169 146-220 (221)
139 TIGR01497 kdpB K+-transporting 96.8 0.0053 1.1E-07 63.9 9.0 90 69-170 445-534 (675)
140 PF13344 Hydrolase_6: Haloacid 96.8 0.0057 1.2E-07 47.9 6.9 87 67-165 11-100 (101)
141 PRK00192 mannosyl-3-phosphogly 96.6 0.0054 1.2E-07 56.9 6.9 85 81-172 143-235 (273)
142 KOG3120 Predicted haloacid deh 96.6 0.0053 1.1E-07 54.1 6.3 96 67-163 81-201 (256)
143 PRK14010 potassium-transportin 96.4 0.017 3.6E-07 60.2 9.9 89 69-169 440-528 (673)
144 PRK01122 potassium-transportin 96.4 0.014 3E-07 60.9 9.1 90 69-170 444-533 (679)
145 TIGR01482 SPP-subfamily Sucros 96.4 0.0067 1.5E-07 54.2 5.9 78 89-170 110-191 (225)
146 TIGR01647 ATPase-IIIA_H plasma 96.4 0.0088 1.9E-07 63.5 7.7 97 69-169 441-559 (755)
147 COG2217 ZntA Cation transport 96.3 0.017 3.6E-07 60.5 9.1 87 69-167 536-622 (713)
148 PRK01158 phosphoglycolate phos 96.3 0.01 2.2E-07 53.3 6.8 78 90-170 119-199 (230)
149 TIGR01517 ATPase-IIB_Ca plasma 96.2 0.015 3.2E-07 63.5 8.5 99 70-169 579-693 (941)
150 TIGR01524 ATPase-IIIB_Mg magne 96.2 0.016 3.5E-07 62.5 8.8 99 69-170 514-628 (867)
151 PRK10517 magnesium-transportin 96.2 0.013 2.9E-07 63.3 7.9 98 69-169 549-662 (902)
152 smart00764 Citrate_ly_lig Citr 96.2 0.0073 1.6E-07 52.6 4.8 78 92-196 91-168 (182)
153 TIGR01487 SPP-like sucrose-pho 96.1 0.012 2.6E-07 52.5 5.9 78 89-171 110-190 (215)
154 TIGR01523 ATPase-IID_K-Na pota 96.1 0.023 4.9E-07 62.5 8.9 100 69-169 645-770 (1053)
155 TIGR01675 plant-AP plant acid 96.1 0.048 1E-06 49.1 9.5 101 67-171 117-222 (229)
156 PF03031 NIF: NLI interacting 96.1 0.0046 1E-07 52.4 2.9 85 68-157 34-119 (159)
157 TIGR01485 SPP_plant-cyano sucr 96.1 0.033 7.2E-07 50.8 8.7 50 123-172 162-211 (249)
158 TIGR01452 PGP_euk phosphoglyco 96.1 0.045 9.7E-07 51.0 9.7 91 68-169 16-109 (279)
159 PRK15122 magnesium-transportin 96.0 0.021 4.6E-07 61.8 8.3 98 69-169 549-662 (903)
160 TIGR02471 sucr_syn_bact_C sucr 95.8 0.03 6.5E-07 50.6 7.1 47 123-169 154-200 (236)
161 KOG2470 Similar to IMP-GMP spe 95.5 0.03 6.5E-07 52.6 5.9 103 70-172 240-376 (510)
162 PF06574 FAD_syn: FAD syntheta 95.5 0.0052 1.1E-07 52.2 0.9 84 72-182 61-155 (157)
163 TIGR01106 ATPase-IIC_X-K sodiu 95.3 0.062 1.3E-06 59.0 8.6 99 70-169 568-708 (997)
164 COG0474 MgtA Cation transport 95.2 0.065 1.4E-06 58.2 8.3 104 68-172 545-666 (917)
165 PF06941 NT5C: 5' nucleotidase 95.1 0.035 7.6E-07 48.6 5.0 90 66-174 69-165 (191)
166 TIGR01484 HAD-SF-IIB HAD-super 95.1 0.03 6.4E-07 49.3 4.4 44 125-168 160-203 (204)
167 TIGR01494 ATPase_P-type ATPase 94.9 0.14 3E-06 51.9 9.2 84 69-167 346-429 (499)
168 TIGR00685 T6PP trehalose-phosp 94.3 0.048 1E-06 49.7 4.0 56 116-171 151-217 (244)
169 smart00775 LNS2 LNS2 domain. T 94.3 0.61 1.3E-05 39.5 10.5 95 70-167 27-142 (157)
170 COG5610 Predicted hydrolase (H 94.3 0.13 2.8E-06 50.1 6.8 101 68-169 95-200 (635)
171 TIGR00099 Cof-subfamily Cof su 93.4 0.12 2.7E-06 47.1 5.0 45 126-170 186-230 (256)
172 COG3882 FkbH Predicted enzyme 93.4 0.54 1.2E-05 46.4 9.3 94 70-170 255-352 (574)
173 TIGR01652 ATPase-Plipid phosph 93.3 0.22 4.8E-06 55.1 7.4 42 68-110 629-670 (1057)
174 KOG0202 Ca2+ transporting ATPa 93.3 0.26 5.7E-06 51.6 7.4 100 69-169 583-702 (972)
175 TIGR01657 P-ATPase-V P-type AT 93.3 0.55 1.2E-05 52.0 10.5 42 69-111 655-696 (1054)
176 KOG0207 Cation transport ATPas 93.1 0.45 9.7E-06 50.4 8.8 87 69-167 722-808 (951)
177 PRK10513 sugar phosphate phosp 92.4 0.19 4.1E-06 46.2 4.7 46 126-171 194-239 (270)
178 PRK10976 putative hydrolase; P 91.9 0.19 4.2E-06 46.1 4.1 46 127-172 189-234 (266)
179 PF11019 DUF2608: Protein of u 91.1 2.9 6.3E-05 38.3 10.9 105 69-173 80-211 (252)
180 PRK10444 UMP phosphatase; Prov 91.1 1.5 3.1E-05 40.2 8.9 52 69-120 16-69 (248)
181 TIGR01457 HAD-SF-IIA-hyp2 HAD- 90.9 0.45 9.7E-06 43.5 5.4 52 69-121 16-70 (249)
182 COG3700 AphA Acid phosphatase 90.9 2.5 5.4E-05 36.4 9.3 106 58-172 101-212 (237)
183 TIGR01658 EYA-cons_domain eyes 90.9 5.6 0.00012 36.1 11.9 78 91-174 180-260 (274)
184 PF03767 Acid_phosphat_B: HAD 90.9 0.14 3E-06 46.4 1.9 89 68-161 113-209 (229)
185 TIGR01680 Veg_Stor_Prot vegeta 90.8 1.5 3.2E-05 40.6 8.5 104 67-172 142-250 (275)
186 TIGR02461 osmo_MPG_phos mannos 90.6 0.3 6.6E-06 43.9 3.9 44 124-169 179-224 (225)
187 TIGR01486 HAD-SF-IIB-MPGP mann 90.3 0.47 1E-05 43.4 5.1 46 127-172 175-222 (256)
188 TIGR01458 HAD-SF-IIA-hyp3 HAD- 90.1 0.39 8.5E-06 44.1 4.3 49 71-120 22-73 (257)
189 PF08282 Hydrolase_3: haloacid 89.9 0.55 1.2E-05 41.9 5.1 42 129-170 187-228 (254)
190 PRK15126 thiamin pyrimidine py 89.8 0.46 1E-05 43.8 4.6 44 128-171 188-231 (272)
191 PRK03669 mannosyl-3-phosphogly 88.8 0.72 1.6E-05 42.6 5.1 45 126-170 185-232 (271)
192 KOG2961 Predicted hydrolase (H 88.5 8.9 0.00019 32.2 10.5 100 68-175 59-171 (190)
193 PF05152 DUF705: Protein of un 88.4 1.2 2.7E-05 41.1 6.1 52 71-123 143-194 (297)
194 COG2216 KdpB High-affinity K+ 88.2 1.7 3.7E-05 43.4 7.2 86 70-167 447-532 (681)
195 TIGR01460 HAD-SF-IIA Haloacid 88.2 3.6 7.9E-05 37.1 9.2 88 68-166 12-102 (236)
196 COG0561 Cof Predicted hydrolas 87.5 0.65 1.4E-05 42.6 3.9 47 126-172 187-233 (264)
197 PLN02887 hydrolase family prot 87.1 0.9 2E-05 46.8 5.0 46 127-172 506-551 (580)
198 KOG0204 Calcium transporting A 86.5 2.2 4.8E-05 45.1 7.3 97 68-167 645-761 (1034)
199 PRK00192 mannosyl-3-phosphogly 86.2 1.5 3.3E-05 40.5 5.6 44 70-114 21-64 (273)
200 KOG2469 IMP-GMP specific 5'-nu 85.8 1.6 3.4E-05 42.3 5.4 99 74-172 202-334 (424)
201 PLN03190 aminophospholipid tra 85.2 1.2 2.6E-05 49.8 5.0 34 69-102 725-758 (1178)
202 PF05822 UMPH-1: Pyrimidine 5' 84.9 1.1 2.4E-05 40.7 3.9 94 68-163 88-198 (246)
203 TIGR01456 CECR5 HAD-superfamil 84.4 3.6 7.8E-05 39.1 7.4 89 68-169 14-109 (321)
204 TIGR02245 HAD_IIID1 HAD-superf 84.0 4.1 8.8E-05 35.8 6.9 84 69-158 44-143 (195)
205 KOG3128 Uncharacterized conser 83.3 1.2 2.7E-05 40.3 3.3 94 68-162 136-246 (298)
206 COG2503 Predicted secreted aci 83.1 7.5 0.00016 35.2 8.1 85 67-159 119-208 (274)
207 COG4030 Uncharacterized protei 81.6 2.9 6.2E-05 37.5 4.9 41 68-110 81-121 (315)
208 PRK10513 sugar phosphate phosp 81.3 4.2 9.2E-05 37.2 6.4 49 70-119 20-68 (270)
209 TIGR02463 MPGP_rel mannosyl-3- 80.2 4.6 0.0001 35.7 6.1 40 71-111 17-56 (221)
210 PF05116 S6PP: Sucrose-6F-phos 79.6 3.2 6.9E-05 37.9 4.9 43 129-172 166-208 (247)
211 KOG2882 p-Nitrophenyl phosphat 79.3 12 0.00026 35.0 8.4 97 67-172 35-133 (306)
212 PLN02382 probable sucrose-phos 78.1 4.2 9E-05 40.2 5.5 41 129-169 176-220 (413)
213 PLN02177 glycerol-3-phosphate 77.6 69 0.0015 32.5 14.0 90 71-169 111-213 (497)
214 TIGR02461 osmo_MPG_phos mannos 77.3 4.9 0.00011 36.1 5.3 42 70-112 15-56 (225)
215 PF13580 SIS_2: SIS domain; PD 76.6 29 0.00063 28.4 9.4 101 70-171 19-137 (138)
216 TIGR01487 SPP-like sucrose-pho 74.1 5.9 0.00013 34.9 4.9 42 69-111 17-58 (215)
217 PRK12702 mannosyl-3-phosphogly 73.9 53 0.0011 30.9 11.2 42 131-172 211-254 (302)
218 PRK10187 trehalose-6-phosphate 73.7 6.3 0.00014 36.3 5.2 44 129-172 175-221 (266)
219 KOG4549 Magnesium-dependent ph 72.8 15 0.00033 29.8 6.3 43 67-110 41-84 (144)
220 TIGR01486 HAD-SF-IIB-MPGP mann 72.7 9.6 0.00021 34.7 6.1 40 71-111 17-56 (256)
221 PRK01158 phosphoglycolate phos 72.3 7.2 0.00016 34.6 5.1 42 70-112 20-61 (230)
222 PRK12702 mannosyl-3-phosphogly 71.7 8.5 0.00018 36.1 5.4 43 70-113 18-60 (302)
223 KOG0206 P-type ATPase [General 71.6 53 0.0012 36.7 12.1 37 68-104 649-685 (1151)
224 KOG0323 TFIIF-interacting CTD 71.1 3.9 8.5E-05 42.2 3.4 55 68-124 199-255 (635)
225 KOG3107 Predicted haloacid deh 71.1 13 0.00029 35.7 6.6 62 108-174 391-454 (468)
226 TIGR00099 Cof-subfamily Cof su 70.4 8.9 0.00019 34.8 5.3 41 70-111 16-56 (256)
227 PRK15126 thiamin pyrimidine py 69.3 9.2 0.0002 35.1 5.2 42 70-112 19-60 (272)
228 COG5663 Uncharacterized conser 67.7 26 0.00057 30.0 6.9 94 67-174 69-164 (194)
229 PF08282 Hydrolase_3: haloacid 67.2 14 0.0003 32.7 5.8 42 69-111 14-55 (254)
230 COG0561 Cof Predicted hydrolas 66.7 16 0.00034 33.3 6.2 43 69-112 19-61 (264)
231 TIGR01482 SPP-subfamily Sucros 66.0 11 0.00025 33.1 5.0 41 70-111 15-55 (225)
232 PRK10530 pyridoxal phosphate ( 65.8 12 0.00026 34.1 5.2 42 70-112 20-61 (272)
233 PRK10976 putative hydrolase; P 65.8 11 0.00025 34.3 5.1 42 70-112 19-60 (266)
234 PRK03669 mannosyl-3-phosphogly 65.0 16 0.00035 33.5 5.9 40 71-111 25-64 (271)
235 COG4850 Uncharacterized conser 64.1 43 0.00094 31.8 8.3 87 67-159 193-293 (373)
236 PF08235 LNS2: LNS2 (Lipin/Ned 61.8 56 0.0012 27.6 8.0 95 70-166 27-141 (157)
237 TIGR01484 HAD-SF-IIB HAD-super 59.8 23 0.00051 30.7 5.8 39 69-108 16-54 (204)
238 cd02170 cytidylyltransferase c 57.1 88 0.0019 25.2 8.4 52 77-135 54-106 (136)
239 TIGR00236 wecB UDP-N-acetylglu 56.2 49 0.0011 31.6 7.8 96 76-172 17-118 (365)
240 TIGR01518 g3p_cytidyltrns glyc 55.9 90 0.0019 24.9 8.2 44 74-123 48-92 (125)
241 TIGR02370 pyl_corrinoid methyl 55.6 1E+02 0.0022 26.9 9.1 91 74-169 100-191 (197)
242 COG0731 Fe-S oxidoreductases [ 55.5 25 0.00054 33.0 5.3 37 68-104 90-127 (296)
243 KOG1618 Predicted phosphatase 55.1 11 0.00023 35.6 2.8 52 123-174 267-343 (389)
244 COG0381 WecB UDP-N-acetylgluco 54.4 70 0.0015 31.2 8.2 95 76-175 20-127 (383)
245 TIGR01689 EcbF-BcbF capsule bi 54.3 76 0.0016 25.7 7.4 31 69-99 23-53 (126)
246 TIGR01485 SPP_plant-cyano sucr 53.2 30 0.00066 31.2 5.5 48 70-119 21-68 (249)
247 cd04728 ThiG Thiazole synthase 51.2 2E+02 0.0042 26.3 10.1 96 68-173 102-206 (248)
248 KOG2134 Polynucleotide kinase 50.7 45 0.00098 32.4 6.2 97 69-168 103-230 (422)
249 PRK14502 bifunctional mannosyl 50.3 32 0.00069 36.2 5.6 45 128-172 613-659 (694)
250 PRK00208 thiG thiazole synthas 49.5 1.7E+02 0.0037 26.7 9.5 96 68-173 102-206 (250)
251 PF02350 Epimerase_2: UDP-N-ac 48.6 33 0.00071 33.0 5.2 90 82-173 3-100 (346)
252 PTZ00174 phosphomannomutase; P 47.4 49 0.0011 29.9 5.9 36 69-104 21-56 (247)
253 PF08057 Ery_res_leader2: Eryt 45.4 8 0.00017 18.1 0.2 8 233-240 7-14 (14)
254 TIGR02329 propionate_PrpR prop 44.8 1E+02 0.0023 31.5 8.3 88 74-173 85-172 (526)
255 PLN02423 phosphomannomutase 43.3 29 0.00064 31.4 3.8 30 143-172 199-232 (245)
256 PRK15317 alkyl hydroperoxide r 42.5 1.3E+02 0.0029 30.5 8.7 101 68-172 127-242 (517)
257 TIGR00190 thiC thiamine biosyn 42.4 1.6E+02 0.0034 29.0 8.5 50 49-98 137-187 (423)
258 KOG2832 TFIIF-interacting CTD 42.1 90 0.0019 30.2 6.7 78 69-151 213-290 (393)
259 TIGR03140 AhpF alkyl hydropero 41.3 1.4E+02 0.0031 30.2 8.8 103 68-172 128-243 (515)
260 PF04413 Glycos_transf_N: 3-De 41.2 80 0.0017 27.4 6.0 96 48-158 80-185 (186)
261 PRK08649 inosine 5-monophospha 40.9 3.2E+02 0.0069 26.6 10.6 89 74-172 119-216 (368)
262 PRK01713 ornithine carbamoyltr 40.6 3.2E+02 0.007 26.1 10.5 92 73-172 89-189 (334)
263 PF04413 Glycos_transf_N: 3-De 40.5 1.7E+02 0.0036 25.4 7.9 88 74-173 36-127 (186)
264 PRK11840 bifunctional sulfur c 39.3 3.5E+02 0.0076 25.8 11.1 96 68-173 176-280 (326)
265 COG1964 Predicted Fe-S oxidore 39.2 4.1E+02 0.0089 26.6 12.3 131 68-237 120-260 (475)
266 PRK13125 trpA tryptophan synth 39.1 2.9E+02 0.0063 24.9 10.3 94 73-172 116-215 (244)
267 KOG0210 P-type ATPase [Inorgan 38.0 57 0.0012 34.3 5.0 82 69-155 657-739 (1051)
268 TIGR02471 sucr_syn_bact_C sucr 37.9 66 0.0014 28.7 5.2 41 77-120 22-62 (236)
269 TIGR00715 precor6x_red precorr 37.8 2.2E+02 0.0047 26.1 8.6 18 157-174 216-233 (256)
270 PRK10076 pyruvate formate lyas 37.6 1.2E+02 0.0026 26.9 6.7 36 69-104 49-87 (213)
271 PRK10187 trehalose-6-phosphate 37.4 56 0.0012 30.0 4.7 40 69-109 35-75 (266)
272 PF03332 PMM: Eukaryotic phosp 36.9 39 0.00085 30.2 3.3 45 75-121 1-45 (220)
273 TIGR02826 RNR_activ_nrdG3 anae 36.8 1E+02 0.0022 25.6 5.7 43 71-120 73-116 (147)
274 PRK13762 tRNA-modifying enzyme 36.3 1.5E+02 0.0033 28.1 7.6 30 68-97 140-169 (322)
275 PLN02887 hydrolase family prot 35.8 85 0.0018 32.5 6.1 41 70-111 325-365 (580)
276 PRK13352 thiamine biosynthesis 35.5 4.1E+02 0.0089 26.3 10.2 66 33-98 122-190 (431)
277 TIGR03124 ctirate_citX holo-AC 35.1 1.6E+02 0.0036 25.0 6.8 69 85-163 77-149 (165)
278 PRK14502 bifunctional mannosyl 34.6 69 0.0015 33.8 5.2 41 71-112 434-474 (694)
279 PRK01060 endonuclease IV; Prov 34.1 2.4E+02 0.0052 25.7 8.5 91 69-174 8-112 (281)
280 COG0761 lytB 4-Hydroxy-3-methy 33.8 1.8E+02 0.0039 27.2 7.2 40 131-174 228-267 (294)
281 PF03622 IBV_3B: IBV 3B protei 33.8 43 0.00092 23.2 2.4 38 323-360 12-54 (64)
282 COG2873 MET17 O-acetylhomoseri 33.6 4E+02 0.0086 26.1 9.6 174 8-225 38-224 (426)
283 KOG0068 D-3-phosphoglycerate d 33.3 1.8E+02 0.004 28.0 7.2 86 76-173 17-102 (406)
284 PRK15424 propionate catabolism 32.7 2E+02 0.0042 29.6 8.1 87 74-172 95-181 (538)
285 cd02070 corrinoid_protein_B12- 30.8 3.6E+02 0.0078 23.4 9.2 90 74-169 98-189 (201)
286 PRK00856 pyrB aspartate carbam 30.6 4.6E+02 0.01 24.7 11.3 94 73-172 88-190 (305)
287 TIGR03278 methan_mark_10 putat 29.8 5.5E+02 0.012 25.3 11.5 51 45-95 50-112 (404)
288 PRK02261 methylaspartate mutas 29.8 3.1E+02 0.0067 22.4 9.5 91 74-171 19-119 (137)
289 TIGR00262 trpA tryptophan synt 29.7 4.4E+02 0.0095 24.1 9.4 95 71-172 125-228 (256)
290 PRK12562 ornithine carbamoyltr 29.5 5.1E+02 0.011 24.8 10.5 92 73-172 88-189 (334)
291 PF05673 DUF815: Protein of un 29.0 2.8E+02 0.006 25.4 7.5 77 74-152 68-147 (249)
292 PRK00994 F420-dependent methyl 29.0 4.5E+02 0.0097 24.0 9.0 83 84-172 29-117 (277)
293 KOG0209 P-type ATPase [Inorgan 28.8 45 0.00098 35.7 2.7 31 68-98 673-703 (1160)
294 PF06506 PrpR_N: Propionate ca 28.4 52 0.0011 28.1 2.7 86 74-172 65-151 (176)
295 PRK14804 ornithine carbamoyltr 28.4 5.1E+02 0.011 24.4 10.7 92 74-173 86-186 (311)
296 cd06167 LabA_like LabA_like pr 28.4 3.2E+02 0.0069 22.1 7.9 45 129-173 84-132 (149)
297 PRK14805 ornithine carbamoyltr 28.0 5.1E+02 0.011 24.3 10.6 92 73-172 81-179 (302)
298 COG0378 HypB Ni2+-binding GTPa 28.0 3.6E+02 0.0077 23.8 7.7 70 76-152 31-104 (202)
299 TIGR00221 nagA N-acetylglucosa 27.9 4E+02 0.0086 25.9 9.1 36 69-104 173-209 (380)
300 PLN02389 biotin synthase 27.7 2.2E+02 0.0048 27.8 7.2 38 72-112 152-191 (379)
301 TIGR01369 CPSaseII_lrg carbamo 27.5 4.1E+02 0.009 29.8 10.1 94 76-172 481-596 (1050)
302 TIGR03470 HpnH hopanoid biosyn 26.7 2.2E+02 0.0047 27.0 6.8 30 68-97 82-111 (318)
303 COG0825 AccA Acetyl-CoA carbox 26.7 85 0.0018 29.4 3.8 106 125-281 128-238 (317)
304 PLN02499 glycerol-3-phosphate 26.7 4.4E+02 0.0096 26.8 9.1 38 78-120 101-138 (498)
305 PF04539 Sigma70_r3: Sigma-70 26.6 1.2E+02 0.0027 21.6 4.1 37 6-42 6-42 (78)
306 PF00875 DNA_photolyase: DNA p 26.4 89 0.0019 26.1 3.8 48 72-124 52-99 (165)
307 PF14819 QueF_N: Nitrile reduc 26.1 68 0.0015 25.3 2.7 22 316-337 81-102 (110)
308 COG4502 5'(3')-deoxyribonucleo 26.0 2E+02 0.0043 24.0 5.4 28 67-95 65-92 (180)
309 PF04028 DUF374: Domain of unk 25.9 2.6E+02 0.0057 20.3 5.7 40 93-141 18-57 (74)
310 TIGR02109 PQQ_syn_pqqE coenzym 25.8 5.3E+02 0.011 24.5 9.5 29 68-96 63-91 (358)
311 COG0036 Rpe Pentose-5-phosphat 25.6 4.9E+02 0.011 23.3 11.0 98 68-172 91-198 (220)
312 smart00540 LEM in nuclear memb 25.0 73 0.0016 20.7 2.3 29 76-104 9-37 (44)
313 smart00052 EAL Putative diguan 24.6 4.5E+02 0.0098 22.7 8.3 23 74-96 134-156 (241)
314 PRK05301 pyrroloquinoline quin 24.3 4.7E+02 0.01 25.1 8.9 29 68-96 72-100 (378)
315 PRK02255 putrescine carbamoylt 24.2 6.4E+02 0.014 24.2 10.4 93 73-173 85-187 (338)
316 PRK05752 uroporphyrinogen-III 23.9 4.4E+02 0.0095 23.7 8.2 93 69-172 9-109 (255)
317 PRK14021 bifunctional shikimat 23.9 5.5E+02 0.012 26.3 9.6 94 74-172 196-303 (542)
318 COG1208 GCD1 Nucleoside-diphos 23.7 3.9E+02 0.0086 25.7 8.1 78 73-156 33-112 (358)
319 PF05402 PqqD: Coenzyme PQQ sy 23.5 92 0.002 21.6 2.8 45 41-87 22-66 (68)
320 cd02071 MM_CoA_mut_B12_BD meth 23.0 3.8E+02 0.0083 21.1 9.8 89 74-169 15-107 (122)
321 TIGR03859 PQQ_PqqD coenzyme PQ 22.9 1.8E+02 0.0038 21.4 4.4 48 37-87 32-79 (81)
322 KOG1618 Predicted phosphatase 22.9 2.9E+02 0.0062 26.4 6.5 90 67-169 48-144 (389)
323 PRK14501 putative bifunctional 22.8 1.3E+02 0.0028 32.1 4.9 34 71-104 515-549 (726)
324 PF13700 DUF4158: Domain of un 22.4 2.7E+02 0.0059 23.3 6.1 79 8-86 70-149 (166)
325 cd05007 SIS_Etherase N-acetylm 22.4 6E+02 0.013 23.1 11.7 96 76-173 40-154 (257)
326 PRK03515 ornithine carbamoyltr 22.3 7E+02 0.015 23.9 10.3 92 73-172 88-189 (336)
327 TIGR02199 rfaE_dom_II rfaE bif 22.3 4.4E+02 0.0095 21.6 8.7 15 158-172 115-129 (144)
328 PF14164 YqzH: YqzH-like prote 22.1 1.7E+02 0.0037 20.7 3.8 28 1-28 1-33 (64)
329 cd02171 G3P_Cytidylyltransfera 21.7 3.8E+02 0.0083 21.2 6.6 9 115-123 87-95 (129)
330 PLN02580 trehalose-phosphatase 21.7 1.5E+02 0.0032 29.1 4.7 36 68-104 139-174 (384)
331 PRK04284 ornithine carbamoyltr 21.3 7.2E+02 0.016 23.7 10.5 92 73-172 88-188 (332)
332 PRK00779 ornithine carbamoyltr 21.3 6.9E+02 0.015 23.5 11.0 93 73-173 86-185 (304)
333 PLN02334 ribulose-phosphate 3- 21.2 5.8E+02 0.013 22.6 10.8 95 73-172 102-203 (229)
334 KOG1605 TFIIF-interacting CTD 21.2 14 0.00031 34.0 -2.2 94 69-167 130-224 (262)
335 TIGR03568 NeuC_NnaA UDP-N-acet 21.2 4E+02 0.0087 25.6 7.7 32 142-173 92-126 (365)
336 PRK12815 carB carbamoyl phosph 20.9 7.3E+02 0.016 27.9 10.4 163 6-172 389-597 (1068)
337 PF00389 2-Hacid_dh: D-isomer 20.8 4.3E+02 0.0094 20.9 7.7 81 77-174 10-93 (133)
338 PLN02342 ornithine carbamoyltr 20.5 7.7E+02 0.017 23.7 10.9 92 73-172 128-226 (348)
339 PRK00973 glucose-6-phosphate i 20.5 7E+02 0.015 25.0 9.2 98 74-173 85-198 (446)
340 TIGR03599 YloV DAK2 domain fus 20.4 6.2E+02 0.013 26.0 9.0 77 88-173 314-394 (530)
341 PF04007 DUF354: Protein of un 20.2 7.4E+02 0.016 23.7 9.1 90 76-172 17-111 (335)
342 PF10113 Fibrillarin_2: Fibril 20.1 8.7E+02 0.019 24.2 11.1 45 130-174 208-256 (505)
343 TIGR00877 purD phosphoribosyla 20.0 4.2E+02 0.0091 25.8 7.7 94 73-171 51-147 (423)
No 1
>PLN02940 riboflavin kinase
Probab=100.00 E-value=3.2e-74 Score=556.52 Aligned_cols=356 Identities=80% Similarity=1.345 Sum_probs=321.5
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKH 81 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~ 81 (362)
|+.++.++|+++++++|.+++.++....+|.+..+.+..++..++.+...+++...+.+.+.....+..++||+.++|+.
T Consensus 25 t~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~ 104 (382)
T PLN02940 25 TDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSEQWCNIKALPGANRLIKH 104 (382)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHccCCCCcCHHHHHHH
Confidence 67889999999999999988888888999999999999888888877777777777777777767788999999999999
Q ss_pred HHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHH
Q 017995 82 LSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 161 (362)
Q Consensus 82 L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~ 161 (362)
|+++|++++|+||+++..++..+.+.+++.++|+.|++++++..+||+|++|..++++++++|++|+||||+..|+++|+
T Consensus 105 Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~VGDs~~Di~aA~ 184 (382)
T PLN02940 105 LKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLVIEDSLPGVMAGK 184 (382)
T ss_pred HHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEEEeCCHHHHHHHH
Confidence 99999999999999999988888337899999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEcCCCCccccccchhHhhcccccccccccCCCCCCccccCCCCCCceeEeeeeeeccCCCccccCccccccC
Q 017995 162 AAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLS 241 (362)
Q Consensus 162 ~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el~~~~~~l~~~~~~~a~~lLgrp~~i~g~v~~G~~~g~~~lg~pTaNi~ 241 (362)
++|+.+++|.++.........++.++.++.++....+++|+++.|+...||||||+++|+|+||+++||+.||||||||.
T Consensus 185 ~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~~~~~~~~~~~~~~~~~~~y~~~G~Vv~G~~~G~~~lg~PTaNl~ 264 (382)
T PLN02940 185 AAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEKWGLPPFNDWIEGTLPIEPWHIGGPVIKGFGRGSKVLGIPTANLS 264 (382)
T ss_pred HcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHHcCCCCccccccCcCCcCCEEEEEEEEeCCccCcccCCCCcccCC
Confidence 99999999987543332344678899999998888899999999999999999999999999999999854899999999
Q ss_pred CCCccccCCCCCCeEEEEEEEEccCeEEEEEEEeCCCCcccCCceeEeEeeccCCCcccCCCeEEEEEeeecCCCCCCCC
Q 017995 242 TEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPS 321 (362)
Q Consensus 242 ~~~~~~~lp~~~~GvY~~~~~~~~~~~~~~~~~iG~~pt~~~~~~~~E~~~~~~f~~~~yg~~~~v~~~~~iR~e~~f~~ 321 (362)
+++...++|.|+.|||++|+.++++.+|+||+|||+||||++.+.+||+|||+||++|+||++|+|.|++|||+|+||+|
T Consensus 265 ~~~~~~~~~~p~~GVY~~~~~~~~~~~~~~v~niG~~Pt~~~~~~~~E~~i~~df~~dlyg~~i~v~~~~~lR~e~kF~~ 344 (382)
T PLN02940 265 TENYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFNNTEKTIEPWLLHDFGEDFYGEELRLVIVGYIRPEANFPS 344 (382)
T ss_pred cchhhhhcCCCCCEEEEEEEEECCCceEEEEEEecCCCccCCCccEEEEEEeCCCCCCCCCCeEEEEEehhcCCCCCCCC
Confidence 87643467645699999999996546899999999999998767789999993399999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccCccCCCCcccc
Q 017995 322 LETLIAKIHEDRKVAERALDLPLYSKYRDDPYLKIT 357 (362)
Q Consensus 322 ~~~L~~qi~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (362)
+|+|++||++|++.||++|+.|+|..|++|.||..|
T Consensus 345 ~~~L~~qi~~D~~~a~~~~~~~~~~~~~~~~~~~~~ 380 (382)
T PLN02940 345 LESLIAKIHEDRRIAEKALDLPLYAKYKDDPYLTNS 380 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchhhhhccChhhccC
Confidence 999999999999999999999999999999999544
No 2
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=100.00 E-value=7.8e-50 Score=368.99 Aligned_cols=223 Identities=26% Similarity=0.337 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHCCCcEE--------EEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCC---CHHHHHHHHHHcCC
Q 017995 74 GANRLIKHLSCHGVPMA--------LASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP---SPDIFLEAAKRLNM 142 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~--------i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp---~p~~~~~~~~~~~~ 142 (362)
...+=++.|.+.|+... ++..++++|++.+|.+.+++ +.|++|+|+++||. +++.+...
T Consensus 55 ~~~~k~~~l~~~Gvd~~~~~~F~~~~a~ls~e~Fi~~~l~~~l~~----~~ivvG~Df~FG~~~~G~~~~L~~~------ 124 (288)
T TIGR00083 55 PLEDKARQLQIKGVEQLLVVVFDEEFANLSALQFIDQLIVKHLHV----KFLVVGDDFRFGHDRQGDFLLLQLF------ 124 (288)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHHHcCCHHHHHHHHHHhccCC----cEEEECCCccCCCCCCCCHHHHHHh------
Confidence 44667788888888754 45678899999887555666 89999999999865 44444443
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCEEEEEcCCCCccccccchhHhhcccccccccccCCCCCCccccCCCCCCceeEeeee
Q 017995 143 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPV 222 (362)
Q Consensus 143 ~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el~~~~~~l~~~~~~~a~~lLgrp~~i~g~v 222 (362)
+.+.|+.++.++....+ ..+|| +.+++.+.++++.. |+.||||||+++|+|
T Consensus 125 -----------------~~~~g~~v~~~~~~~~~-~~ISS-T~IR~~l~~G~i~~----------A~~lLGr~y~i~G~V 175 (288)
T TIGR00083 125 -----------------GNTTIFCVIVKQLFCQD-IRISS-SAIRQALKNGDLEL----------ANKLLGRPYFICGTV 175 (288)
T ss_pred -----------------ccccCcEEEEeccccCC-CeECH-HHHHHHHHcCCHHH----------HHHhhhhhhccceEE
Confidence 56788888888876554 55653 56666666788774 999999999999999
Q ss_pred eeccCCCccccCccccccCCCCccccCCCCCCeEEEEEEEEccCeEEEEEEEeCCCCcccCCceeEeEeeccCCCcccCC
Q 017995 223 VKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYD 302 (362)
Q Consensus 223 ~~G~~~g~~~lg~pTaNi~~~~~~~~lp~~~~GvY~~~~~~~~~~~~~~~~~iG~~pt~~~~~~~~E~~~~~~f~~~~yg 302 (362)
+||+++|| +||||||||.+++. .++| +.|||+++|.++ +.+|+||+|||.||||++.+.++|+|||| |++|+||
T Consensus 176 v~G~~~Gr-~lGfPTaNl~~~~~-~~~p--~~GVYa~~v~i~-~~~y~~v~niG~~PT~~~~~~~~E~~ild-f~~dlYg 249 (288)
T TIGR00083 176 IHGQKLGR-TLGFPTANIKLKNQ-VLPL--KGGYYVVVVLLN-GEPYPGVGNIGNRPTFIGQQLVIEVHLLD-FSGELYG 249 (288)
T ss_pred EecCCCcc-cccCceEEecCccc-ccCC--CcceEEEEEEeC-CeEEEEEEEeCCCCccCCCceEEEEEeCC-CCcccCC
Confidence 99999998 59999999998775 5666 489999999985 58899999999999998766789999998 9999999
Q ss_pred CeEEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Q 017995 303 EELHLVIVGYIRPEANFPSLETLIAKIHEDRKVAERALD 341 (362)
Q Consensus 303 ~~~~v~~~~~iR~e~~f~~~~~L~~qi~~d~~~~~~~~~ 341 (362)
++++|+|++|||+|+||+|+|+|++||++|++.||++|+
T Consensus 250 ~~i~v~f~~~iR~e~kF~s~~~L~~qI~~D~~~ar~~~~ 288 (288)
T TIGR00083 250 QEIKVTLVKKIRPEQKFSSLDELKNQIQQDILQAKKWFN 288 (288)
T ss_pred CEEEEEeHHhccCCCCcCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999874
No 3
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=100.00 E-value=2e-47 Score=356.45 Aligned_cols=223 Identities=30% Similarity=0.394 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHCCCcEEEE--------cCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCC---CHHHHHHHHHHcCC
Q 017995 74 GANRLIKHLSCHGVPMALA--------SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP---SPDIFLEAAKRLNM 142 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~--------S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp---~p~~~~~~~~~~~~ 142 (362)
-..+=++.|++.|+...++ +.++++|++.+|.+.++. +.|++|+|+++|+. +.+.+...
T Consensus 71 t~eeR~~~l~~~gVD~~~~~~F~~~~~~ls~e~Fi~~~l~~~l~~----~~iVvG~Df~FG~~~~G~~~~L~~~------ 140 (305)
T PRK05627 71 PLRDKAELLAELGVDYVLVLPFDEEFAKLSAEEFIEDLLVKGLNA----KHVVVGFDFRFGKKRAGDFELLKEA------ 140 (305)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCHHHhcCCHHHHHHHHHHhccCC----CEEEECCCCCCCCCCCCCHHHHHHH------
Confidence 4466677888888887664 457899999877455665 89999999999864 44444433
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCEEEEEcCCCCccccccchhHhhcccccccccccCCCCCCccccCCCCCCceeEeeee
Q 017995 143 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPV 222 (362)
Q Consensus 143 ~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el~~~~~~l~~~~~~~a~~lLgrp~~i~g~v 222 (362)
+++.|+.++.++....++..+|| +.+++.+.++++.. |+.||||||+++|+|
T Consensus 141 -----------------~~~~g~~v~~v~~~~~~~~~ISS-T~IR~~I~~G~i~~----------A~~lLg~~y~~~g~V 192 (305)
T PRK05627 141 -----------------GKEFGFEVTIVPEVKEDGERVSS-TAIRQALAEGDLEL----------ANKLLGRPYSISGRV 192 (305)
T ss_pred -----------------HHHcCcEEEEeccEecCCCcCch-HHHHHHHHcCCHHH----------HHhhhcCCCceEEEE
Confidence 56788999999886666666654 66666666788774 999999999999999
Q ss_pred eeccCCCccccCccccccCCCCccccCCCCCCeEEEEEEEEccCeEEEEEEEeCCCCcccCCceeEeEeeccCCCcccCC
Q 017995 223 VKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYD 302 (362)
Q Consensus 223 ~~G~~~g~~~lg~pTaNi~~~~~~~~lp~~~~GvY~~~~~~~~~~~~~~~~~iG~~pt~~~~~~~~E~~~~~~f~~~~yg 302 (362)
+||+++|| +||||||||.+++. ++| +.|||++|+.++ +.+|+||+|||+||||++.+.++|+|||| |++|+||
T Consensus 193 ~~G~~~Gr-~lgfPTaNl~~~~~--~~p--~~GVY~~~~~i~-~~~y~~~~~iG~~ptf~~~~~~~E~~i~d-f~~d~Yg 265 (305)
T PRK05627 193 VHGQKLGR-TLGFPTANLPLPDR--VLP--ADGVYAVRVKVD-GKPYPGVANIGTRPTVDGGRQLLEVHLLD-FNGDLYG 265 (305)
T ss_pred EECcccCc-cccceeEeecCccC--CCC--CceEEEEEEEEC-CEEEEEEEEecCCCccCCCceEEEEEecC-CCCccCC
Confidence 99999998 59999999998774 346 489999999995 58999999999999998767789999998 9999999
Q ss_pred CeEEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Q 017995 303 EELHLVIVGYIRPEANFPSLETLIAKIHEDRKVAERALD 341 (362)
Q Consensus 303 ~~~~v~~~~~iR~e~~f~~~~~L~~qi~~d~~~~~~~~~ 341 (362)
++++|+|++|||+|+||+|+|+|++||++|++.||++|.
T Consensus 266 ~~i~v~~~~~iR~e~kF~s~~~L~~~i~~D~~~a~~~~~ 304 (305)
T PRK05627 266 EHITVEFLKKLRDEQKFDSLDELKAQIAKDIETARAFLA 304 (305)
T ss_pred CEEEEEEhhhcCCCCCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999875
No 4
>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....
Probab=100.00 E-value=6.2e-48 Score=312.40 Aligned_cols=125 Identities=39% Similarity=0.714 Sum_probs=109.9
Q ss_pred CCCCceeEeeeeeeccCCCccccCccccccCCCCccccCCCCCCeEEEEEEEEccCeEEEEEEEeCCCCcccCCceeEeE
Q 017995 211 LPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEP 290 (362)
Q Consensus 211 lLgrp~~i~g~v~~G~~~g~~~lg~pTaNi~~~~~~~~lp~~~~GvY~~~~~~~~~~~~~~~~~iG~~pt~~~~~~~~E~ 290 (362)
||||||+++|+|+||+++|| +||||||||.++.. .++|+ .|||++|+.++ +.+|+||+|||+||||++...+|||
T Consensus 1 LLG~py~i~G~Vv~G~~~Gr-~lGfPTANl~~~~~-~~~p~--~GVYa~~v~~~-~~~~~~v~niG~~PTf~~~~~~vE~ 75 (125)
T PF01687_consen 1 LLGRPYSISGTVVHGFGRGR-KLGFPTANLDIPDD-KLLPK--EGVYAVWVRVD-GKWYPGVTNIGYRPTFDGKERTVEV 75 (125)
T ss_dssp HHTSSEEEEEEEEC-SSCCC-CTTS-EEEEEEHCC-CTCCC--TEEEEEEEEET-SEEEEEEEEEEEETTTSSCEEEEEE
T ss_pred CcCCCEEEEEEEEeCCcccc-ccCCccccccCCcc-ccccc--CEEEEEEEEEC-CEEEEeEEEecCCCccCcCceeEEE
Confidence 57999999999999999998 59999999999554 67884 79999999995 6899999999999999888899999
Q ss_pred eeccCCCcccCCCeEEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Q 017995 291 WLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRKVAERALD 341 (362)
Q Consensus 291 ~~~~~f~~~~yg~~~~v~~~~~iR~e~~f~~~~~L~~qi~~d~~~~~~~~~ 341 (362)
|||| |++|+||++|+|.|++|||+|+||+|+|+|++||++|++.||++|+
T Consensus 76 hild-f~~dlYg~~i~v~~~~~lR~e~kF~s~e~L~~qI~~D~~~a~~~lq 125 (125)
T PF01687_consen 76 HILD-FDGDLYGKKIKVEFLKFLRPEKKFDSLEELKEQIKKDIEQARKYLQ 125 (125)
T ss_dssp EETT-SSSE-TTSEEEEEEEEEEEE----SSHHHHHHHHHHHHHHHHHHH-
T ss_pred EEec-cCcccCCCeEEEEEEeCccCCcccCCHHHHHHHHHHHHHHHHHhcC
Confidence 9998 9999999999999999999999999999999999999999999984
No 5
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=100.00 E-value=9.7e-47 Score=347.49 Aligned_cols=224 Identities=29% Similarity=0.419 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHCCCcEE--------EEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 017995 74 GANRLIKHLSCHGVPMA--------LASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 145 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~--------i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~ 145 (362)
...+=++.|...|+... +++.++++|++ .+.+.++. +.|++|+||++||..........
T Consensus 73 ~~~~k~~~l~~~gvd~~~v~~F~~~fa~ls~~~Fv~-~lv~~l~~----k~ivvG~DF~FGk~~~g~~~~L~-------- 139 (304)
T COG0196 73 PLREKIRLLAGYGVDALVVLDFDLEFANLSAEEFVE-LLVEKLNV----KHIVVGFDFRFGKGRQGNAELLR-------- 139 (304)
T ss_pred CHHHHHHHHHhcCCcEEEEEeCCHhHhhCCHHHHHH-HHHhccCC----cEEEEecccccCCCCCCCHHHHH--------
Confidence 35566788888886654 55778999999 44477765 78999999999987544322211
Q ss_pred cEEEEecCHhhHHHHHHcCCEEEEEcCCCCccccccchhHhhcccccccccccCCCCCCccccCCCCCCceeEeeeeeec
Q 017995 146 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKG 225 (362)
Q Consensus 146 ~~l~igDs~~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el~~~~~~l~~~~~~~a~~lLgrp~~i~g~v~~G 225 (362)
..+.+ |+.|+.++....++.++|| +.+++.+.+++++. |+.+|||||++.|+|+||
T Consensus 140 ------------~~~~~-gf~v~~v~~~~~~~~~iSS-t~IR~~L~~gdl~~----------A~~lLG~py~i~G~Vv~G 195 (304)
T COG0196 140 ------------ELGQK-GFEVTIVPKINEEGIRISS-TAIRQALREGDLEE----------ANKLLGRPYSIEGKVVHG 195 (304)
T ss_pred ------------HhccC-CceEEEeccEecCCcEEch-HHHHHHHhcCCHHH----------HHHhcCCCeEEEEEEEcc
Confidence 12455 9999999998777777764 66666666788774 999999999999999999
Q ss_pred cCCCccccCccccccCCCCccccCCCCCCeEEEEEEEEccCeEEEEEEEeCCCCcccCCceeEeEeeccCCCcccCCCeE
Q 017995 226 LGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEEL 305 (362)
Q Consensus 226 ~~~g~~~lg~pTaNi~~~~~~~~lp~~~~GvY~~~~~~~~~~~~~~~~~iG~~pt~~~~~~~~E~~~~~~f~~~~yg~~~ 305 (362)
+++|| +||||||||.++.. .+| +.|||++++.+.+ ..|+||+|||+|||+++..+++|+|||| |++|+||+.+
T Consensus 196 ~~~Gr-~lGfPTaNi~~~~~--~~~--~~GVYav~v~~~~-~~~~gv~~vG~rpt~~~~~~~lEvhi~D-f~~dlYG~~i 268 (304)
T COG0196 196 QKLGR-TLGFPTANIYLKDN--VLP--AFGVYAVRVKLDG-GVYPGVANVGYRPTVDGSERSLEVHILD-FNGDLYGERV 268 (304)
T ss_pred ccccc-ccCCCccccccccc--ccc--CCeeEEEEEEECC-ccccceEEecccccccCCeeEEEEEEec-ccccccCceE
Confidence 99998 59999999998874 555 4899999999864 3499999999999998878999999999 9999999999
Q ss_pred EEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Q 017995 306 HLVIVGYIRPEANFPSLETLIAKIHEDRKVAERALD 341 (362)
Q Consensus 306 ~v~~~~~iR~e~~f~~~~~L~~qi~~d~~~~~~~~~ 341 (362)
+|.|++|||+|+||+|+|+|++||++|++.||++|+
T Consensus 269 ~v~~~~~iR~e~kF~s~d~L~~qi~~D~~~Ar~~~~ 304 (304)
T COG0196 269 KVRFLKFIRDEKKFDSLDELKEQIEKDIERARKLLA 304 (304)
T ss_pred EEEEhhhcccccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999874
No 6
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-41 Score=267.38 Aligned_cols=149 Identities=54% Similarity=1.020 Sum_probs=135.4
Q ss_pred cCCCCCCceeEeeeeeeccCCCccccCccccccCCCCccccCCCCCCeEEEEEEEEccCeEEEEEEEeCCCCcccCCcee
Q 017995 208 EGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKT 287 (362)
Q Consensus 208 a~~lLgrp~~i~g~v~~G~~~g~~~lg~pTaNi~~~~~~~~lp~~~~GvY~~~~~~~~~~~~~~~~~iG~~pt~~~~~~~ 287 (362)
++.+.--||...|.||+|.+||+++||+||||+.......++-....|||.+|+.++.+..|++++||||||.+++++++
T Consensus 5 ~~~~~~~P~~~~g~VVrGFGRGskeLGiPTAN~~~~~v~~l~~~l~~GvYfG~A~v~~~~v~kMvmSIGwNP~Y~N~~Kt 84 (153)
T KOG3110|consen 5 AQPMSPLPLFFGGEVVRGFGRGSKELGIPTANFPENVVPKLPEDLPSGVYFGWAHVDKGDVFKMVMSIGWNPYYKNKKKT 84 (153)
T ss_pred cccCCCCCEEecCeEEEecCCCccccCCccCCCCHHHHhcccccCCCceEEEeeeecCCCceeEEEEcccCcccCCcccc
Confidence 34455569999999999999999999999999986554333333447999999999877899999999999999998999
Q ss_pred EeEeeccCCCcccCCCeEEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCccccCccCCCCccc
Q 017995 288 IEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDDPYLKI 356 (362)
Q Consensus 288 ~E~~~~~~f~~~~yg~~~~v~~~~~iR~e~~f~~~~~L~~qi~~d~~~~~~~~~~~~~~~~~~~~~~~~ 356 (362)
+|+|+++||..|+||+++++..++|||||+.|+|+|+|++.|+-||+.|++.|+.|.|++|++|+||++
T Consensus 85 ~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~~p~~~k~K~dpff~~ 153 (153)
T KOG3110|consen 85 MELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLDLPEYAKFKEDPFFTV 153 (153)
T ss_pred eeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhcCcchhhhccCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999963
No 7
>PRK07143 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=279.32 Aligned_cols=200 Identities=17% Similarity=0.133 Sum_probs=159.1
Q ss_pred chHHHHHHHHHHCCCcEEE--------EcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017995 73 PGANRLIKHLSCHGVPMAL--------ASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 144 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i--------~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p 144 (362)
-...+=++.|++.|+...+ +..++++|++.++ . ++. +.||+|+|+++||........+.+ +
T Consensus 65 ~~~~er~~~l~~~Gvd~~~~~~F~~~~a~ls~e~Fi~~ll-~-l~~----~~iVvG~Df~FG~~r~G~~~~L~~-~---- 133 (279)
T PRK07143 65 SDLNSRLQTLANLGFKNIILLDFNEELQNLSGNDFIEKLT-K-NQV----SFFVVGKDFRFGKNASWNADDLKE-Y---- 133 (279)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCHHHhCCCHHHHHHHHH-h-cCC----CEEEECCCcccCCCCCCCHHHHHH-h----
Confidence 3445666788888887654 3458899998766 4 554 789999999999765443333211 1
Q ss_pred CcEEEEecCHhhHHHHHHcCCEEEEEcCCCCccccccchhHhhcccccccccccCCCCCCccccCCCCCCceeEeeeeee
Q 017995 145 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVK 224 (362)
Q Consensus 145 ~~~l~igDs~~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el~~~~~~l~~~~~~~a~~lLgrp~~i~g~v~~ 224 (362)
.+ .+..++....++..+|| +.+++.+.++++.. |++||||||+++|+|+|
T Consensus 134 ------------------~~-~v~~v~~~~~~g~~ISS-T~IR~~l~~G~i~~----------A~~lLGr~y~i~G~V~~ 183 (279)
T PRK07143 134 ------------------FP-NVHIVEILKINQQKIST-SLLKEFIEFGDIEL----------LNSLLLYNYSISITINK 183 (279)
T ss_pred ------------------CC-cEEEeCCEEcCCcEEcH-HHHHHHHHcCCHHH----------HHHHcCCCcEEEEEEEC
Confidence 11 56667765555666654 56666666788774 99999999999999999
Q ss_pred ccCCCccccCccccccCCCCccccCCCCCCeEEEEEEEEccCeEEEEEEEeCCCCcccCCceeEeEeeccCCCc--ccCC
Q 017995 225 GLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDE--DFYD 302 (362)
Q Consensus 225 G~~~g~~~lg~pTaNi~~~~~~~~lp~~~~GvY~~~~~~~~~~~~~~~~~iG~~pt~~~~~~~~E~~~~~~f~~--~~yg 302 (362)
| ||+.+++. .++|+ .|||+++|.++ +.+|+||+|||.||| +|||||| |++ |+||
T Consensus 184 G------------aNl~~~~~-~~~P~--~GVYa~~v~~~-~~~y~~v~niG~~PT-------iE~hild-f~~~~dlYg 239 (279)
T PRK07143 184 N------------FEFTYPQN-IIKLH--AGIYLAYVVIN-NFKYHGILKINFNNK-------NKIKFFD-FDLIINKYQ 239 (279)
T ss_pred C------------eEeCCCcC-cCCCC--CcEEEEEEEEC-CEEEEEEEEecCCce-------EEEEEec-CCCCcCCCC
Confidence 8 89998765 67774 89999999984 689999999999999 8999998 999 8999
Q ss_pred CeEEEEEeeecCCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Q 017995 303 EELHLVIVGYIRPEANFPSLETLIAKIHEDRKVAERALDL 342 (362)
Q Consensus 303 ~~~~v~~~~~iR~e~~f~~~~~L~~qi~~d~~~~~~~~~~ 342 (362)
+|+|+|++|||+|+||+| + +||++|++.||++|+.
T Consensus 240 -~i~v~f~~~iR~e~kF~s-~---~qi~~D~~~a~~~~~~ 274 (279)
T PRK07143 240 -EIFIEIVKEIRIISSNED-N---NILNDDIEIAKKFFLN 274 (279)
T ss_pred -EEEEEEhhccCCCcCCCc-H---HHHHHHHHHHHHHHHh
Confidence 999999999999999999 5 8899999999999964
No 8
>PLN02811 hydrolase
Probab=99.93 E-value=9.3e-25 Score=196.70 Aligned_cols=195 Identities=39% Similarity=0.656 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHhhhcCCCCCchHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSDHLCKVKALPGANRLI 79 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L 79 (362)
|+.++..+|+++++++|++++.+....++|.+..+.+..+.+..+.+. ..+++.+....++........++||+.++|
T Consensus 8 s~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gv~e~l 87 (220)
T PLN02811 8 TEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDLMPGAERLV 87 (220)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 688999999999999999888777788999999998888888777652 344555555555555455688999999999
Q ss_pred HHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCC--CCCCCCCCHHHHHHHHHHcC---CCCCcEEEEecCH
Q 017995 80 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--EVRTGKPSPDIFLEAAKRLN---MEPSSSLVIEDSV 154 (362)
Q Consensus 80 ~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~--d~~~gKp~p~~~~~~~~~~~---~~p~~~l~igDs~ 154 (362)
+.|+++|++++|+||+....+...+.+..++.++|+.+++++ ++..+||+|++|..++++++ +.|++|+||||+.
T Consensus 88 ~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~v~IgDs~ 167 (220)
T PLN02811 88 RHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKVLVFEDAP 167 (220)
T ss_pred HHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccceEEEeccH
Confidence 999999999999999988755544424557889999999999 88889999999999999997 9999999999999
Q ss_pred hhHHHHHHcCCEEEEEcCCCCccccccchhHhhccccccccc
Q 017995 155 IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 196 (362)
Q Consensus 155 ~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el~~~ 196 (362)
.|+++|+++|+++|+|.++.........++.+++++.++...
T Consensus 168 ~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~ 209 (220)
T PLN02811 168 SGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPE 209 (220)
T ss_pred hhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHH
Confidence 999999999999999987543322334568899999886544
No 9
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.92 E-value=4.8e-24 Score=191.95 Aligned_cols=171 Identities=33% Similarity=0.483 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHhhhcCCCCCchHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSDHLCKVKALPGANRLI 79 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L 79 (362)
|+.++.++|.++++++|++++.+.....+|....+....+........ +...................+++||+.++|
T Consensus 16 se~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGv~~~l 95 (221)
T COG0637 16 SEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALELEGLKPIPGVVELL 95 (221)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhhhcCCCCCccHHHHH
Confidence 789999999999999999999988888899888888888877665432 222333333333334446799999999999
Q ss_pred HHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 017995 80 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 159 (362)
Q Consensus 80 ~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~a 159 (362)
+.|+++|++++++|++++..++..| +.+|+.++|+.+++++|+..+||+|++|+.+++++|++|++||+|+||.+|+++
T Consensus 96 ~~L~~~~i~~avaS~s~~~~~~~~L-~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~CvviEDs~~Gi~A 174 (221)
T COG0637 96 EQLKARGIPLAVASSSPRRAAERVL-ARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECVVVEDSPAGIQA 174 (221)
T ss_pred HHHHhcCCcEEEecCChHHHHHHHH-HHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeEEEecchhHHHH
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEcCC
Q 017995 160 GKAAGMEVVAVPSL 173 (362)
Q Consensus 160 A~~aG~~~i~v~~~ 173 (362)
|+++||.++++...
T Consensus 175 a~aAGm~vv~v~~~ 188 (221)
T COG0637 175 AKAAGMRVVGVPAG 188 (221)
T ss_pred HHHCCCEEEEecCC
Confidence 99999999999873
No 10
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.92 E-value=5e-24 Score=196.19 Aligned_cols=168 Identities=22% Similarity=0.287 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHH-HhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh-cCCCCCchHHHHHHH
Q 017995 4 GMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-CKVKALPGANRLIKH 81 (362)
Q Consensus 4 ~~~~~a~~~~l~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pgv~~~L~~ 81 (362)
.++.++|+++++++|++++.++. +++.|.+..+.++.+..........+++...+...+.... ...+++||+.++|+.
T Consensus 41 ~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~pg~~e~L~~ 120 (260)
T PLN03243 41 ELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCWSRDFLQMKRLAIRKEDLYEYMQGGLYRLRPGSREFVQA 120 (260)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccCcccCCCHHHHHHH
Confidence 57788999999999998776544 6789999988887765421110012334444444443322 357899999999999
Q ss_pred HHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHH
Q 017995 82 LSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 161 (362)
Q Consensus 82 L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~ 161 (362)
|+++|++++|+||++...++..+ +++|+.++|+.|++++++..+||+|++|..++++++++|++|+||||+..|+++|+
T Consensus 121 L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~IgDs~~Di~aA~ 199 (260)
T PLN03243 121 LKKHEIPIAVASTRPRRYLERAI-EAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVFGNSNSSVEAAH 199 (260)
T ss_pred HHHCCCEEEEEeCcCHHHHHHHH-HHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEEcCCHHHHHHHH
Confidence 99999999999999999999888 89999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEEEcC
Q 017995 162 AAGMEVVAVPS 172 (362)
Q Consensus 162 ~aG~~~i~v~~ 172 (362)
++|+.++++..
T Consensus 200 ~aG~~~i~v~g 210 (260)
T PLN03243 200 DGCMKCVAVAG 210 (260)
T ss_pred HcCCEEEEEec
Confidence 99999999964
No 11
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.92 E-value=1.3e-23 Score=187.77 Aligned_cols=191 Identities=20% Similarity=0.244 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHhhcCCCHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHhhh-cCCCCCchHH
Q 017995 2 TDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAK---HEFVNEVYSMFSDHL-CKVKALPGAN 76 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~pgv~ 76 (362)
|+..+..+++++++++|.+ ++.+.+...+|.+..+.++.+.+.++.+.+. +++...+...|.... ...+++||+.
T Consensus 12 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 91 (213)
T TIGR01449 12 SAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEVAGELTSVFPGVE 91 (213)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHhccccCccCCCHH
Confidence 5678889999999999986 5777788888999888888877766655443 334444555555444 3578999999
Q ss_pred HHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhh
Q 017995 77 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG 156 (362)
Q Consensus 77 ~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d 156 (362)
++|+.|+++|++++|+||++...++..+ +++|+.++|+.+++++++..+||+|+.|..++++++++|++|+||||+..|
T Consensus 92 ~~L~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~igDs~~d 170 (213)
T TIGR01449 92 ATLGALRAKGLRLGLVTNKPTPLARPLL-ELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYVGDSRVD 170 (213)
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEeCCCHHH
Confidence 9999999999999999999999999888 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEcCCCCcccc--ccchhHhhcccccc
Q 017995 157 VVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDL 193 (362)
Q Consensus 157 ~~aA~~aG~~~i~v~~~~~~~~~--~ssa~~vi~~l~el 193 (362)
+++|+++|+.++++.++...... ...++.++.++.++
T Consensus 171 ~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l 209 (213)
T TIGR01449 171 IQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNEL 209 (213)
T ss_pred HHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHH
Confidence 99999999999999875432211 23456777776653
No 12
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.92 E-value=8.7e-24 Score=193.78 Aligned_cols=189 Identities=25% Similarity=0.319 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHHHcCC----CCCHHHH-HhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh-cCCCCCchH
Q 017995 2 TDGMFSEVLKTFLVKYGK----EWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-CKVKALPGA 75 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~----~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pgv 75 (362)
|+..+.++|+++++++|. +++.+.. ..+.|.+..+.+..+... ... ...++...+...|.... ....++||+
T Consensus 36 s~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~y~~~~~~~~~l~pgv 113 (248)
T PLN02770 36 SDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPD-DLE-RGLKFTDDKEALFRKLASEQLKPLNGL 113 (248)
T ss_pred CHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCc-chh-hHHHHHHHHHHHHHHHHHhcCCcCccH
Confidence 678899999999999964 4555543 567888888777655432 111 11223344455555544 468999999
Q ss_pred HHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHh
Q 017995 76 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 155 (362)
Q Consensus 76 ~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~ 155 (362)
.++|+.|+++|++++|+||++...++..+ +++|+.++|+.|++++++..+||+|+.|..++++++++|++|+||||+..
T Consensus 114 ~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~vgDs~~ 192 (248)
T PLN02770 114 YKLKKWIEDRGLKRAAVTNAPRENAELMI-SLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVFEDSVS 192 (248)
T ss_pred HHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEEcCCHH
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCEEEEEcCCCCcccc-ccchhHhhcccccc
Q 017995 156 GVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDL 193 (362)
Q Consensus 156 d~~aA~~aG~~~i~v~~~~~~~~~-~ssa~~vi~~l~el 193 (362)
|+++|+++|+.++++.++...... ...++.++.++.+.
T Consensus 193 Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~ 231 (248)
T PLN02770 193 GIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDP 231 (248)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhh
Confidence 999999999999999875422211 22456777777763
No 13
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.92 E-value=1.1e-23 Score=201.14 Aligned_cols=192 Identities=26% Similarity=0.287 Sum_probs=157.5
Q ss_pred CHH-HHHHHHHHHHHHcCCCCCHH-HHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh-cCCCCCchHHHH
Q 017995 2 TDG-MFSEVLKTFLVKYGKEWDGR-EKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-CKVKALPGANRL 78 (362)
Q Consensus 2 Se~-~~~~a~~~~l~~~g~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pgv~~~ 78 (362)
|+. ++.++|+++++++|++++.+ .+..+.|.+..+.+..+......+...+++...+.+.|.+.. ....++||+.++
T Consensus 145 S~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~y~~~~~~~~~l~pGa~El 224 (381)
T PLN02575 145 DNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEIYQALQGGIYRLRTGSQEF 224 (381)
T ss_pred CHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCCcCcCHHHH
Confidence 444 67789999999999987665 457899999999888776533222223445555566665544 357899999999
Q ss_pred HHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 017995 79 IKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 158 (362)
Q Consensus 79 L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~ 158 (362)
|+.|+++|++++|+||++...++..+ +++||.++|+.|++++++..+||+|++|..+++++|+.|++|+||||+..|++
T Consensus 225 L~~Lk~~GiklaIaSn~~~~~~~~~L-~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~IGDS~~DIe 303 (381)
T PLN02575 225 VNVLMNYKIPMALVSTRPRKTLENAI-GSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVFGNSNQTVE 303 (381)
T ss_pred HHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHH
Confidence 99999999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEcCCCCccccccchhHhhcccccccc
Q 017995 159 AGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 195 (362)
Q Consensus 159 aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el~~ 195 (362)
+|+++||.+|+|.+..... ....++.+++++.++..
T Consensus 304 AAk~AGm~~IgV~~~~~~~-~l~~Ad~iI~s~~EL~~ 339 (381)
T PLN02575 304 AAHDARMKCVAVASKHPIY-ELGAADLVVRRLDELSI 339 (381)
T ss_pred HHHHcCCEEEEECCCCChh-HhcCCCEEECCHHHHHH
Confidence 9999999999998643222 22345667788877643
No 14
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.92 E-value=2.5e-23 Score=187.58 Aligned_cols=191 Identities=21% Similarity=0.358 Sum_probs=158.2
Q ss_pred CHHHHHHHHHHHHHHcCCCCCH-HHHHhhcCCCHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhhh-cCCCCCchHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDG-REKHKIVGKTPLEEAAIIVEDYGL-PCAKHEFVNEVYSMFSDHL-CKVKALPGANRL 78 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~pgv~~~ 78 (362)
|+..+..+++++++++|.+.+. +.+...+|.......+.+....+. ....+++...+.+.+.+.. ....++||+.++
T Consensus 21 ~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 100 (222)
T PRK10826 21 SEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVISLIEETRPLLPGVREA 100 (222)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 4678999999999999998765 567788888887777666555443 2234455555555554433 468999999999
Q ss_pred HHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 017995 79 IKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 158 (362)
Q Consensus 79 L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~ 158 (362)
|+.|+++|++++|+||+....++..+ +.+++.++|+.+++++++..+||+|+.|..+++++|++|++|+||||+.+|++
T Consensus 101 l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~igDs~~Di~ 179 (222)
T PRK10826 101 LALCKAQGLKIGLASASPLHMLEAVL-TMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALEDSFNGMI 179 (222)
T ss_pred HHHHHHCCCeEEEEeCCcHHHHHHHH-HhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCChhhHH
Confidence 99999999999999999999999888 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEcCCCCcc-ccccchhHhhcccccc
Q 017995 159 AGKAAGMEVVAVPSLPKQT-HRYTAADEVINSLLDL 193 (362)
Q Consensus 159 aA~~aG~~~i~v~~~~~~~-~~~ssa~~vi~~l~el 193 (362)
+|+++|++++++....... .....++.++.++.++
T Consensus 180 aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl 215 (222)
T PRK10826 180 AAKAARMRSIVVPAPEQQNDPRWALADVKLESLTEL 215 (222)
T ss_pred HHHHcCCEEEEecCCccCchhhhhhhheeccCHHHH
Confidence 9999999999998754322 2233567888888875
No 15
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.91 E-value=1.6e-23 Score=188.47 Aligned_cols=191 Identities=23% Similarity=0.349 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHh-hcCCCHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhhhc--CCCCCchHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHK-IVGKTPLEEAAIIVEDYGLPCA-KHEFVNEVYSMFSDHLC--KVKALPGANR 77 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~pgv~~ 77 (362)
|.+.+.++|+++++++|.+.+.++..+ ++|.+..+.++.+....+.+.. .+++...+.+.+...+. ..+++||+.+
T Consensus 15 s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 94 (220)
T TIGR03351 15 EDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEAYDDGPPVALPGAEE 94 (220)
T ss_pred cCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcccCCccCCCHHH
Confidence 567899999999999999888777766 8899999999888877665421 24455566666655542 5789999999
Q ss_pred HHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc--CCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCC-CCcEEEEecCH
Q 017995 78 LIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME-PSSSLVIEDSV 154 (362)
Q Consensus 78 ~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~--~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~-p~~~l~igDs~ 154 (362)
+|+.|+++|++++|+||+....++..| +++++. ++|+.++++++...+||+|++|..+++++++. |++|+||||+.
T Consensus 95 ~L~~L~~~g~~~~ivT~~~~~~~~~~l-~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~igD~~ 173 (220)
T TIGR03351 95 AFRSLRSSGIKVALTTGFDRDTAERLL-EKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAVAGDTP 173 (220)
T ss_pred HHHHHHHCCCEEEEEeCCchHHHHHHH-HHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhHeEEeCCCH
Confidence 999999999999999999999999999 888998 99999999999999999999999999999997 79999999999
Q ss_pred hhHHHHHHcCCEE-EEEcCCCCcccc--ccchhHhhcccccc
Q 017995 155 IGVVAGKAAGMEV-VAVPSLPKQTHR--YTAADEVINSLLDL 193 (362)
Q Consensus 155 ~d~~aA~~aG~~~-i~v~~~~~~~~~--~ssa~~vi~~l~el 193 (362)
+|+++|+++|+.+ +++.++...... ...++.++.++.++
T Consensus 174 ~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l 215 (220)
T TIGR03351 174 NDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADL 215 (220)
T ss_pred HHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHH
Confidence 9999999999999 888775432221 23456666666653
No 16
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.91 E-value=3.5e-23 Score=186.46 Aligned_cols=190 Identities=25% Similarity=0.385 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhc---CCCCCchHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC---KVKALPGANR 77 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pgv~~ 77 (362)
|...+..+++.+++++|.+ .+.+.+..+.|.+..+.+..+.......... +..+.+++.|...+. ...++||+.+
T Consensus 18 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~e 96 (220)
T COG0546 18 SAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAA-ELVERLREEFLTAYAELLESRLFPGVKE 96 (220)
T ss_pred ChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHH-HHHHHHHHHHHHHHHhhccCccCCCHHH
Confidence 5677889999999999998 7889999999999999888776544433221 455555555555543 2589999999
Q ss_pred HHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 017995 78 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 157 (362)
Q Consensus 78 ~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~ 157 (362)
+|..|+++|++++|+||+++..++..| +++|+.++|+.++++++....||+|..+..++++++++|++++||||+.+|+
T Consensus 97 ~L~~L~~~g~~l~i~T~k~~~~~~~~l-~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~VGDs~~Di 175 (220)
T COG0546 97 LLAALKSAGYKLGIVTNKPERELDILL-KALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMVGDSLNDI 175 (220)
T ss_pred HHHHHHhCCCeEEEEeCCcHHHHHHHH-HHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheEEECCCHHHH
Confidence 999999999999999999999999999 8899999999999999999999999999999999999988999999999999
Q ss_pred HHHHHcCCEEEEEcCCCCccc--cccchhHhhcccccc
Q 017995 158 VAGKAAGMEVVAVPSLPKQTH--RYTAADEVINSLLDL 193 (362)
Q Consensus 158 ~aA~~aG~~~i~v~~~~~~~~--~~ssa~~vi~~l~el 193 (362)
++|+++|+.+++|.++....+ ....++.++.++.++
T Consensus 176 ~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el 213 (220)
T COG0546 176 LAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAEL 213 (220)
T ss_pred HHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHH
Confidence 999999999999999753222 234568888888775
No 17
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.91 E-value=4.9e-23 Score=186.61 Aligned_cols=190 Identities=19% Similarity=0.314 Sum_probs=154.7
Q ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh-cCCCCCchHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-CKVKALPGANRLI 79 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pgv~~~L 79 (362)
|...+..+|+.+++++|.+ .+.+.+...+|.+....++.+..... ....+++.+.+.+.|.... ...+++||+.++|
T Consensus 26 s~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~L 104 (229)
T PRK13226 26 SAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELD-AAARDALIPEFLQRYEALIGTQSQLFDGVEGML 104 (229)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhhhcCeeCCCHHHHH
Confidence 6788999999999999986 57777888888887776655443221 1123455666666666544 4578999999999
Q ss_pred HHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 017995 80 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 159 (362)
Q Consensus 80 ~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~a 159 (362)
+.|+++|++++|+||++...+...+ +++++.++|+.+++++++..+||+|++|..+++++|++|++|+||||+.+|+++
T Consensus 105 ~~L~~~g~~l~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~IGDs~~Di~a 183 (229)
T PRK13226 105 QRLECAGCVWGIVTNKPEYLARLIL-PQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYVGDDERDILA 183 (229)
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHH-HHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEeCCCHHHHHH
Confidence 9999999999999999999888888 889999999999999999899999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEcCCCCccc--c-ccchhHhhcccccc
Q 017995 160 GKAAGMEVVAVPSLPKQTH--R-YTAADEVINSLLDL 193 (362)
Q Consensus 160 A~~aG~~~i~v~~~~~~~~--~-~ssa~~vi~~l~el 193 (362)
|+++|+.+++|.++..... . ...++.+++++.++
T Consensus 184 A~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el 220 (229)
T PRK13226 184 ARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLL 220 (229)
T ss_pred HHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHH
Confidence 9999999999988653221 1 12357777777664
No 18
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.90 E-value=8.8e-23 Score=187.67 Aligned_cols=169 Identities=16% Similarity=0.218 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHH----------HHHHhCCCCCHH---HHHHHHHHHHHhhh-cCCCC
Q 017995 6 FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI----------IVEDYGLPCAKH---EFVNEVYSMFSDHL-CKVKA 71 (362)
Q Consensus 6 ~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~ 71 (362)
+..+|+++++++|.+++.+++...+|.+....++. +...++.+.+.+ ++...+...+.... ...++
T Consensus 21 ~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (253)
T TIGR01422 21 PTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEADIEAIYEAFEPLQLAKLAEYSSP 100 (253)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 57899999999999888888888888876655443 234445443332 33344444443333 46899
Q ss_pred CchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCC-cEEEeCCCCCCCCCCHHHHHHHHHHcCCC-CCcEEE
Q 017995 72 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNME-PSSSLV 149 (362)
Q Consensus 72 ~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f-~~iv~~~d~~~gKp~p~~~~~~~~~~~~~-p~~~l~ 149 (362)
+||+.++|+.|+++|++++|+||++...++..+ +++|+.++| +.|++++++..+||+|++|..+++++++. |++|+|
T Consensus 101 ~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l-~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l~ 179 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGSTTGYTREMMDVVA-PEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACVK 179 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchheEE
Confidence 999999999999999999999999999999888 888999986 89999999999999999999999999995 999999
Q ss_pred EecCHhhHHHHHHcCCEEEEEcCCCC
Q 017995 150 IEDSVIGVVAGKAAGMEVVAVPSLPK 175 (362)
Q Consensus 150 igDs~~d~~aA~~aG~~~i~v~~~~~ 175 (362)
|||+.+|+++|+++|+.+|+|.++..
T Consensus 180 IGDs~~Di~aA~~aGi~~i~v~~g~~ 205 (253)
T TIGR01422 180 VGDTVPDIEEGRNAGMWTVGLILSSN 205 (253)
T ss_pred ECCcHHHHHHHHHCCCeEEEEecCCc
Confidence 99999999999999999999988653
No 19
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.90 E-value=1.9e-22 Score=176.85 Aligned_cols=168 Identities=27% Similarity=0.425 Sum_probs=147.4
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh-cCCCCCchHHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-CKVKALPGANRLIK 80 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pgv~~~L~ 80 (362)
|+..+.++|+++++++|.+++.+......|.+..+.+..+...++.+.+.+++...+...+.... ....++|| .++|.
T Consensus 19 s~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~L~ 97 (188)
T PRK10725 19 TEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVKSMLLDSVEPLPL-IEVVK 97 (188)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCCccH-HHHHH
Confidence 67889999999999999988877888899999988888888877766666666555555554443 56788897 58999
Q ss_pred HHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHH
Q 017995 81 HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG 160 (362)
Q Consensus 81 ~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA 160 (362)
.|++. ++++|+||++...++..| +++|+.++|+.|++++++..+||+|++|..++++++++|++||||||+..|+++|
T Consensus 98 ~L~~~-~~l~I~T~~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs~~di~aA 175 (188)
T PRK10725 98 AWHGR-RPMAVGTGSESAIAEALL-AHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQAA 175 (188)
T ss_pred HHHhC-CCEEEEcCCchHHHHHHH-HhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEeccHhhHHHH
Confidence 99876 899999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEEEcC
Q 017995 161 KAAGMEVVAVPS 172 (362)
Q Consensus 161 ~~aG~~~i~v~~ 172 (362)
+++|+++|+|..
T Consensus 176 ~~aG~~~i~~~~ 187 (188)
T PRK10725 176 RAAGMDAVDVRL 187 (188)
T ss_pred HHCCCEEEeecC
Confidence 999999999853
No 20
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.90 E-value=7.2e-23 Score=183.48 Aligned_cols=186 Identities=21% Similarity=0.310 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh-cCCCCCchHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-CKVKALPGANRLI 79 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pgv~~~L 79 (362)
|+..+.++|++++++++.+ ++.+.+...+|.+..+.+..+. +...+++...+...+.... ...+++||+.++|
T Consensus 17 s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 91 (214)
T PRK13288 17 TNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKID-----ESKVEEMITTYREFNHEHHDELVTEYETVYETL 91 (214)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhcC-----HHHHHHHHHHHHHHHHHhhhhhcccCcCHHHHH
Confidence 5778999999999999864 6778888899998877765432 1233455555555554433 4678999999999
Q ss_pred HHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 017995 80 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 159 (362)
Q Consensus 80 ~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~a 159 (362)
+.|+++|++++|+||+....++..+ +.+|+.++|+.+++++++..+||+|+.|..++++++++|++|+||||+.+|+++
T Consensus 92 ~~L~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~iGDs~~Di~a 170 (214)
T PRK13288 92 KTLKKQGYKLGIVTTKMRDTVEMGL-KLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMVGDNHHDILA 170 (214)
T ss_pred HHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEECCCHHHHHH
Confidence 9999999999999999999999889 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEcCCCCcccc--ccchhHhhcccccc
Q 017995 160 GKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDL 193 (362)
Q Consensus 160 A~~aG~~~i~v~~~~~~~~~--~ssa~~vi~~l~el 193 (362)
|+++|+.+++|.++...... ...++.+++++.++
T Consensus 171 a~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l 206 (214)
T PRK13288 171 GKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDL 206 (214)
T ss_pred HHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHH
Confidence 99999999999886432221 12355666666653
No 21
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.90 E-value=1.5e-22 Score=182.21 Aligned_cols=188 Identities=22% Similarity=0.348 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHH-HHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh-cCCCCCchHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-CKVKALPGANRLI 79 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pgv~~~L 79 (362)
|+.++.++|+++++++|++++.++ ...+.|.+..+.++.+.+.++.+.+.+++...+...+.... ...+++||+.++|
T Consensus 18 ~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L 97 (221)
T PRK10563 18 SEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEVARLFDSELEPIAGANALL 97 (221)
T ss_pred ChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHccCCcCCCHHHHH
Confidence 467788999999999999887654 46778889999999999888887666777666666554443 4689999999999
Q ss_pred HHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCc-EEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 017995 80 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 158 (362)
Q Consensus 80 ~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~-~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~ 158 (362)
+.| +++++|+||++...++..| +++++.++|+ .++++++++..||+|++|..++++++++|++|+||||+..|++
T Consensus 98 ~~L---~~~~~ivTn~~~~~~~~~l-~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~igDs~~di~ 173 (221)
T PRK10563 98 ESI---TVPMCVVSNGPVSKMQHSL-GKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCILVDDSSAGAQ 173 (221)
T ss_pred HHc---CCCEEEEeCCcHHHHHHHH-HhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHH
Confidence 999 3899999999999999888 8899999996 6888888999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEcCCCCccccccchhHhhcccccc
Q 017995 159 AGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 193 (362)
Q Consensus 159 aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el 193 (362)
+|+++|++++++............++.++.++.++
T Consensus 174 aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 208 (221)
T PRK10563 174 SGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQL 208 (221)
T ss_pred HHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHH
Confidence 99999999998865322221112334566777664
No 22
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.90 E-value=2.5e-22 Score=175.48 Aligned_cols=167 Identities=29% Similarity=0.414 Sum_probs=142.9
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHHhhh---cCCCCCchH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSMFSDHL---CKVKALPGA 75 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~pgv 75 (362)
|++.+.++|+++++.+|++++.+....+.|.+..+.++.+....+.+.+.+. +...+.+.|.... ....++||+
T Consensus 13 s~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~ 92 (185)
T TIGR01990 13 TAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELLKELTPADVLPGI 92 (185)
T ss_pred ChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcccCccH
Confidence 5788999999999999999888877888999999999988888777655433 3344444444433 235899999
Q ss_pred HHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHh
Q 017995 76 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 155 (362)
Q Consensus 76 ~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~ 155 (362)
.++|+.|+++|++++|+||+.. ....+ +++++.++|+.+++++++..+||+|+.|..++++++++|++|+||||+..
T Consensus 93 ~~~L~~L~~~g~~~~i~s~~~~--~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~vgD~~~ 169 (185)
T TIGR01990 93 KNLLDDLKKNNIKIALASASKN--APTVL-EKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGIEDAQA 169 (185)
T ss_pred HHHHHHHHHCCCeEEEEeCCcc--HHHHH-HhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEEecCHH
Confidence 9999999999999999998754 34567 88999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCEEEEEc
Q 017995 156 GVVAGKAAGMEVVAVP 171 (362)
Q Consensus 156 d~~aA~~aG~~~i~v~ 171 (362)
|+++|+++|+++|+|.
T Consensus 170 di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 170 GIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHHHHHcCCEEEecC
Confidence 9999999999999873
No 23
>PRK11587 putative phosphatase; Provisional
Probab=99.89 E-value=4e-22 Score=179.28 Aligned_cols=186 Identities=26% Similarity=0.381 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH--HHh-hhcCCCCCchHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM--FSD-HLCKVKALPGANRL 78 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~pgv~~~ 78 (362)
|++.+.++|+++++++|++. .+....+.|.+..+.++.+... .+.+++.+.+... +.. .....+++||+.++
T Consensus 17 s~~~~~~a~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~ 91 (218)
T PRK11587 17 SLPAVERAWSNWADRHGIAP-DEVLNFIHGKQAITSLRHFMAG----ASEAEIQAEFTRLEQIEATDTEGITALPGAIAL 91 (218)
T ss_pred CHHHHHHHHHHHHHHcCCCH-HHHHHHHcCCCHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHhhhcCceeCcCHHHH
Confidence 57889999999999999864 3344556688888777665432 1233443433321 222 23568899999999
Q ss_pred HHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 017995 79 IKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 158 (362)
Q Consensus 79 L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~ 158 (362)
|+.|+++|++++|+||++...+...+ +..++ .+|+.+++++++...||+|+.|..+++++|+.|++|+||||+..|++
T Consensus 92 L~~L~~~g~~~~ivTn~~~~~~~~~l-~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~igDs~~di~ 169 (218)
T PRK11587 92 LNHLNKLGIPWAIVTSGSVPVASARH-KAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVL 169 (218)
T ss_pred HHHHHHcCCcEEEEcCCCchHHHHHH-HhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEecchhhhH
Confidence 99999999999999999988777677 77787 46788999999988999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEEcCCCCccccccchhHhhcccccccc
Q 017995 159 AGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 195 (362)
Q Consensus 159 aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el~~ 195 (362)
+|+++|+.++++.+.... .....++.+++++.++..
T Consensus 170 aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~~~el~~ 205 (218)
T PRK11587 170 SGLAAGCHVIAVNAPADT-PRLDEVDLVLHSLEQLTV 205 (218)
T ss_pred HHHHCCCEEEEECCCCch-hhhccCCEEecchhheeE
Confidence 999999999999775322 222345677777777543
No 24
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.89 E-value=8.3e-22 Score=174.94 Aligned_cols=170 Identities=41% Similarity=0.637 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKH 81 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~ 81 (362)
|+.++.++|++.++++|.+.+.+.....+|....+..+.+...+..+.+.+++..+..+..........++||+.++++.
T Consensus 24 te~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~~~~~~~~~PGa~kLv~~ 103 (222)
T KOG2914|consen 24 TEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDRLFMNSILMPGAEKLVNH 103 (222)
T ss_pred cHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhccccccCCcHHHHHHH
Confidence 78999999999999999988888889999999999999999888899999999999999998888999999999999999
Q ss_pred HHHCCCcEEEEcCCChHhHHHHHHhhcC-CcCCCcEEEe--CCCCCCCCCCHHHHHHHHHHcCCCC-CcEEEEecCHhhH
Q 017995 82 LSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVG--SDEVRTGKPSPDIFLEAAKRLNMEP-SSSLVIEDSVIGV 157 (362)
Q Consensus 82 L~~~g~~~~i~S~~~~~~i~~~L~~~~g-l~~~f~~iv~--~~d~~~gKp~p~~~~~~~~~~~~~p-~~~l~igDs~~d~ 157 (362)
|+.+|++++++|++++..++..+ .+++ +...|++++. +.++..|||+|++|+.+++++|..| +.||+++|++.++
T Consensus 104 L~~~gip~alat~s~~~~~~~k~-~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k~lVfeds~~Gv 182 (222)
T KOG2914|consen 104 LKNNGIPVALATSSTSASFELKI-SRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSKCLVFEDSPVGV 182 (222)
T ss_pred HHhCCCCeeEEecCCcccHHHHH-HHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCccceEEECCCHHHH
Confidence 99999999999999999999888 5554 8888999888 7788899999999999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEEcC
Q 017995 158 VAGKAAGMEVVAVPS 172 (362)
Q Consensus 158 ~aA~~aG~~~i~v~~ 172 (362)
++|+++||.||+++.
T Consensus 183 ~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 183 QAAKAAGMQVVGVAT 197 (222)
T ss_pred HHHHhcCCeEEEecC
Confidence 999999999999988
No 25
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.89 E-value=1.1e-21 Score=181.88 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHH----------HHHhCCCCCHH---HHHHHHHHHHHhhh-cCCCC
Q 017995 6 FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAII----------VEDYGLPCAKH---EFVNEVYSMFSDHL-CKVKA 71 (362)
Q Consensus 6 ~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~ 71 (362)
+..+|+++++++|++++.++....+|.+....++.+ ...++.+.+.+ ++...+...+.... ....+
T Consensus 23 ~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (267)
T PRK13478 23 PTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTEADVDALYAAFEPLQIAKLADYATP 102 (267)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 468999999999998888888888888866655443 23345443332 33344444444333 46889
Q ss_pred CchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCC-cEEEeCCCCCCCCCCHHHHHHHHHHcCCC-CCcEEE
Q 017995 72 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNME-PSSSLV 149 (362)
Q Consensus 72 ~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f-~~iv~~~d~~~gKp~p~~~~~~~~~~~~~-p~~~l~ 149 (362)
+||+.++|+.|+++|++++|+||++...++..+ +.+++.++| +.|++++++..+||+|++|..+++++++. |++|+|
T Consensus 103 ~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l-~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l~ 181 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGSTTGYTREMMDVVV-PLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACVK 181 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceEE
Confidence 999999999999999999999999999998888 778888874 89999999999999999999999999996 699999
Q ss_pred EecCHhhHHHHHHcCCEEEEEcCCCC
Q 017995 150 IEDSVIGVVAGKAAGMEVVAVPSLPK 175 (362)
Q Consensus 150 igDs~~d~~aA~~aG~~~i~v~~~~~ 175 (362)
|||+.+|+++|+++|+.+|+|.++..
T Consensus 182 IGDs~~Di~aA~~aG~~~i~v~~g~~ 207 (267)
T PRK13478 182 VDDTVPGIEEGLNAGMWTVGVILSGN 207 (267)
T ss_pred EcCcHHHHHHHHHCCCEEEEEccCcc
Confidence 99999999999999999999988643
No 26
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.88 E-value=2e-21 Score=169.72 Aligned_cols=166 Identities=30% Similarity=0.471 Sum_probs=142.0
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHhhh--cCCCCCchHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKH---EFVNEVYSMFSDHL--CKVKALPGAN 76 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~pgv~ 76 (362)
|+..+..+++++++++|++++.+....+.|.+..+.+..+...++...+.+ .+...+.+.+.... ....++||+.
T Consensus 15 s~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 94 (185)
T TIGR02009 15 TAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYRELLRLTGAEVLPGIE 94 (185)
T ss_pred ChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhccCCCCCcCHH
Confidence 567889999999999999887666677889999999888888775444433 34444555555544 3589999999
Q ss_pred HHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhh
Q 017995 77 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG 156 (362)
Q Consensus 77 ~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d 156 (362)
++|+.|+++|++++++|++ ..++..+ +++|+.++|+.++++++...+||+|++|..++++++++|++|+||||+..|
T Consensus 95 ~~l~~l~~~g~~i~i~S~~--~~~~~~l-~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~IgD~~~d 171 (185)
T TIGR02009 95 NFLKRLKKKGIAVGLGSSS--KNADRIL-AKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVSPNECVVFEDALAG 171 (185)
T ss_pred HHHHHHHHcCCeEEEEeCc--hhHHHHH-HHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhh
Confidence 9999999999999999998 5567778 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEE
Q 017995 157 VVAGKAAGMEVVAV 170 (362)
Q Consensus 157 ~~aA~~aG~~~i~v 170 (362)
+++|+++|+++++|
T Consensus 172 i~aA~~~G~~~i~v 185 (185)
T TIGR02009 172 VQAARAAGMFAVAV 185 (185)
T ss_pred HHHHHHCCCeEeeC
Confidence 99999999999875
No 27
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.88 E-value=2.1e-21 Score=172.78 Aligned_cols=184 Identities=24% Similarity=0.322 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHHH-cCCC-CCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCCchHHHHH
Q 017995 2 TDGMFSEVLKTFLVK-YGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLI 79 (362)
Q Consensus 2 Se~~~~~a~~~~l~~-~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L 79 (362)
|...+.+++++++++ +|.+ .+.+.+.+++|.+..+.++. .+.+..... ......+ ......+++||+.++|
T Consensus 12 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~--~~~~~~~-~~~~~~~~~~g~~~~L 84 (205)
T TIGR01454 12 SFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIMRI----MGLPLEMEE--PFVRESY-RLAGEVEVFPGVPELL 84 (205)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHHHH----cCCCHHHHH--HHHHHHH-HhhcccccCCCHHHHH
Confidence 678899999999998 4764 56777888889877766543 344321111 1112222 2235689999999999
Q ss_pred HHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 017995 80 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 159 (362)
Q Consensus 80 ~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~a 159 (362)
+.|+++|++++|+||+....++..+ +++|+.++|+.+++++++..+||+|+.|..++++++++|++|+||||+..|+.+
T Consensus 85 ~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~igD~~~Di~a 163 (205)
T TIGR01454 85 AELRADGVGTAIATGKSGPRARSLL-EALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVGDAVTDLAS 163 (205)
T ss_pred HHHHHCCCeEEEEeCCchHHHHHHH-HHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEEEcCCHHHHHH
Confidence 9999999999999999999999888 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEEcCCCCcccc--ccchhHhhcccccc
Q 017995 160 GKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDL 193 (362)
Q Consensus 160 A~~aG~~~i~v~~~~~~~~~--~ssa~~vi~~l~el 193 (362)
|+++|++++++.++...... ...++.++.++.++
T Consensus 164 A~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l 199 (205)
T TIGR01454 164 ARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSL 199 (205)
T ss_pred HHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHH
Confidence 99999999999886543322 12345666666553
No 28
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.88 E-value=1.3e-21 Score=175.92 Aligned_cols=189 Identities=20% Similarity=0.287 Sum_probs=133.6
Q ss_pred HHHHHHHHHHH---HHHcCCCCCHHHHHhhc-------CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCC
Q 017995 3 DGMFSEVLKTF---LVKYGKEWDGREKHKIV-------GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKAL 72 (362)
Q Consensus 3 e~~~~~a~~~~---l~~~g~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (362)
+..+..+++.+ +..+|++++.+++...+ +.........+....+.....+.+......++......++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (221)
T TIGR02253 17 SGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYNPKLVAAFVYAYHKLKFAYLRVY 96 (221)
T ss_pred CCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcCHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555544 56778877766553322 111111111122222222222333333333333333567999
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEec
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 152 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igD 152 (362)
||+.++|+.|+++|++++|+||++...+...+ +++|+.++|+.|+++++++.+||+|+.|..+++++|++|++|+||||
T Consensus 97 ~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~igD 175 (221)
T TIGR02253 97 PGVRDTLMELRESGYRLGIITDGLPVKQWEKL-ERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVGD 175 (221)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEECC
Confidence 99999999999999999999999998888888 89999999999999999999999999999999999999999999999
Q ss_pred CH-hhHHHHHHcCCEEEEEcCCCCcc---ccccchhHhhccccc
Q 017995 153 SV-IGVVAGKAAGMEVVAVPSLPKQT---HRYTAADEVINSLLD 192 (362)
Q Consensus 153 s~-~d~~aA~~aG~~~i~v~~~~~~~---~~~ssa~~vi~~l~e 192 (362)
+. +|+.+|+++|+.+|++.++.... .....++.+++++.+
T Consensus 176 s~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~e 219 (221)
T TIGR02253 176 RLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLRE 219 (221)
T ss_pred ChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHh
Confidence 98 89999999999999998754322 111234555555544
No 29
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.87 E-value=6.9e-21 Score=176.84 Aligned_cols=191 Identities=23% Similarity=0.263 Sum_probs=153.5
Q ss_pred CHHHHHHHHHHHHHHcCCCC-CHHHHHhhcCCCHHHHHHHHHHH----hCCCC-CHHHHHHHHHHHHHhhhcCCCCCchH
Q 017995 2 TDGMFSEVLKTFLVKYGKEW-DGREKHKIVGKTPLEEAAIIVED----YGLPC-AKHEFVNEVYSMFSDHLCKVKALPGA 75 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~-~~~~~~~~~g~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pgv 75 (362)
|++.+.++++++++++|.+. +.+.+..++|.+..+.+..+... .+.+. ..+++...+.+.|........++||+
T Consensus 27 s~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 106 (272)
T PRK13223 27 SVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALFMEAYADSHELTVVYPGV 106 (272)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHhcCcCCccCCCH
Confidence 57889999999999999986 45567788898877776655432 12221 12344455555555433457899999
Q ss_pred HHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHh
Q 017995 76 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 155 (362)
Q Consensus 76 ~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~ 155 (362)
.++|+.|+++|++++|+||++...++..+ +++++..+|+.+++++++..+||+|+.|..+++++|++|++|++|||+..
T Consensus 107 ~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l-~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~IGD~~~ 185 (272)
T PRK13223 107 RDTLKWLKKQGVEMALITNKPERFVAPLL-DQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLFVGDSRS 185 (272)
T ss_pred HHHHHHHHHCCCeEEEEECCcHHHHHHHH-HHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEEECCCHH
Confidence 99999999999999999999999988888 88999999999999999998999999999999999999999999999999
Q ss_pred hHHHHHHcCCEEEEEcCCCCcccc--ccchhHhhcccccc
Q 017995 156 GVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDL 193 (362)
Q Consensus 156 d~~aA~~aG~~~i~v~~~~~~~~~--~ssa~~vi~~l~el 193 (362)
|+++|+++|+.+++|.++...... ...++.+++++.++
T Consensus 186 Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el 225 (272)
T PRK13223 186 DVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRAL 225 (272)
T ss_pred HHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHH
Confidence 999999999999999875432222 22467777777775
No 30
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.86 E-value=1.6e-20 Score=174.03 Aligned_cols=184 Identities=17% Similarity=0.251 Sum_probs=149.3
Q ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHhhcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhhhcCCCCCchHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMFSDHLCKVKALPGANRLI 79 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L 79 (362)
|++.+..+++++++++|.+ ++.+.+.++.|.+..+.++. ++.+. ..+++...+.+.+......++++||+.++|
T Consensus 76 S~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~e~L 151 (273)
T PRK13225 76 SLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRR----AGLSPWQQARLLQRVQRQLGDCLPALQLFPGVADLL 151 (273)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHH----cCCCHHHHHHHHHHHHHHHHhhcccCCcCCCHHHHH
Confidence 6788999999999999986 57777788888877665543 34331 234455666666655556789999999999
Q ss_pred HHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 017995 80 KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 159 (362)
Q Consensus 80 ~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~a 159 (362)
+.|+++|++++|+||+....++..+ +++|+.++|+.++++++.. +.++.+..++++++++|++|+||||+..|+++
T Consensus 152 ~~L~~~gi~laIvSn~~~~~~~~~L-~~~gl~~~F~~vi~~~~~~---~k~~~~~~~l~~~~~~p~~~l~IGDs~~Di~a 227 (273)
T PRK13225 152 AQLRSRSLCLGILSSNSRQNIEAFL-QRQGLRSLFSVVQAGTPIL---SKRRALSQLVAREGWQPAAVMYVGDETRDVEA 227 (273)
T ss_pred HHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhheEEEEecCCCC---CCHHHHHHHHHHhCcChhHEEEECCCHHHHHH
Confidence 9999999999999999999999999 8999999999998887653 35688999999999999999999999999999
Q ss_pred HHHcCCEEEEEcCCCCcccc--ccchhHhhcccccc
Q 017995 160 GKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDL 193 (362)
Q Consensus 160 A~~aG~~~i~v~~~~~~~~~--~ssa~~vi~~l~el 193 (362)
|+++|+.+++|.++...... ...++.+++++.++
T Consensus 228 A~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL 263 (273)
T PRK13225 228 ARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDL 263 (273)
T ss_pred HHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHH
Confidence 99999999999886443321 23467788777765
No 31
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.86 E-value=5.8e-20 Score=165.65 Aligned_cols=191 Identities=20% Similarity=0.286 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHHHcCCC-CCHHHHHhhcCCCHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHhhh-cCCCCCchHH
Q 017995 2 TDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAK---HEFVNEVYSMFSDHL-CKVKALPGAN 76 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~pgv~ 76 (362)
|...+..++..+++.+|.+ ++.+.+..++|.+..+.+..+....+..... +++...+...|.... ....++||+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 99 (226)
T PRK13222 20 SAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFDRHYAENVAGGSRLYPGVK 99 (226)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHhccccCccCCCHH
Confidence 4567888999999999986 4667778888988888877776654433333 334445555555444 3588999999
Q ss_pred HHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhh
Q 017995 77 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG 156 (362)
Q Consensus 77 ~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d 156 (362)
++|+.|+++|++++++|++....++..+ +++++..+|+.+++++++...||+|+.|..++++++++|++|++|||+.+|
T Consensus 100 ~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~igD~~~D 178 (226)
T PRK13222 100 ETLAALKAAGYPLAVVTNKPTPFVAPLL-EALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLFVGDSRND 178 (226)
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEEECCCHHH
Confidence 9999999999999999999999998888 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEcCCCCcccc--ccchhHhhcccccc
Q 017995 157 VVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDL 193 (362)
Q Consensus 157 ~~aA~~aG~~~i~v~~~~~~~~~--~ssa~~vi~~l~el 193 (362)
+++|+++|+.+++|.++...... ...++++++++.++
T Consensus 179 i~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l 217 (226)
T PRK13222 179 IQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAEL 217 (226)
T ss_pred HHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHH
Confidence 99999999999999876432211 22456777777764
No 32
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.85 E-value=1.5e-20 Score=161.62 Aligned_cols=162 Identities=28% Similarity=0.478 Sum_probs=138.9
Q ss_pred HHHHHHHHH-HHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHH
Q 017995 4 GMFSEVLKT-FLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHL 82 (362)
Q Consensus 4 ~~~~~a~~~-~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L 82 (362)
..+.+++.. +++.++.+.+.+.++...+.+..+.+..+....+.. ...+.+.+.+. ......+++||+.++|+.|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~l 89 (176)
T PF13419_consen 14 PAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGID--PEEIQELFREY--NLESKLQPYPGVRELLERL 89 (176)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHGGEEESTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchh--HHHHHHHhhhh--hhhhccchhhhhhhhhhhc
Confidence 456778887 478899887777788888888888888888876543 33333333333 1125789999999999999
Q ss_pred HHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 017995 83 SCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 162 (362)
Q Consensus 83 ~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~ 162 (362)
+++|++++++||.+...++..+ +++|+.++|+.++++++.+..||+|+.|..++++++++|++|++|||+..|+++|++
T Consensus 90 ~~~~~~~~i~Sn~~~~~~~~~l-~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD~~~d~~~A~~ 168 (176)
T PF13419_consen 90 KAKGIPLVIVSNGSRERIERVL-ERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGDSPSDVEAAKE 168 (176)
T ss_dssp HHTTSEEEEEESSEHHHHHHHH-HHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEESSHHHHHHHHH
T ss_pred ccccceeEEeecCCcccccccc-cccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeCCHHHHHHHHH
Confidence 9999999999999999999899 889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEE
Q 017995 163 AGMEVVAV 170 (362)
Q Consensus 163 aG~~~i~v 170 (362)
+|+.+|+|
T Consensus 169 ~G~~~i~v 176 (176)
T PF13419_consen 169 AGIKTIWV 176 (176)
T ss_dssp TTSEEEEE
T ss_pred cCCeEEeC
Confidence 99999986
No 33
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.85 E-value=6.6e-20 Score=164.99 Aligned_cols=186 Identities=19% Similarity=0.219 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcC-------------CCHH----HHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVG-------------KTPL----EEAAIIVEDYGLPCAKHEFVNEVYSMFSD 64 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g-------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (362)
|...+.++++++++++|++.+.+....+.+ .+.. +.+..+...++.+...+.+.. .+..
T Consensus 15 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 90 (224)
T TIGR02254 15 FQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEADEALLNQ----KYLR 90 (224)
T ss_pred cchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCcHHHHHH----HHHH
Confidence 356678899999999998775443322211 1111 112334444454333222322 2332
Q ss_pred hh-cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHc-CC
Q 017995 65 HL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NM 142 (362)
Q Consensus 65 ~~-~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~-~~ 142 (362)
.. ...+++||+.++|+.|+++ ++++++||+....++..+ +.+++..+|+.|+++++.+..||+|++|..+++++ ++
T Consensus 91 ~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~ 168 (224)
T TIGR02254 91 FLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRL-RKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKF 168 (224)
T ss_pred HHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHH-HHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCC
Confidence 22 3578999999999999999 999999999999998888 88999999999999999999999999999999999 99
Q ss_pred CCCcEEEEecCH-hhHHHHHHcCCEEEEEcCCCCccccccchhHhhcccccc
Q 017995 143 EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 193 (362)
Q Consensus 143 ~p~~~l~igDs~-~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el 193 (362)
+|++|+||||+. .|+++|+++|+.++++.++.........++.++.++.++
T Consensus 169 ~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el 220 (224)
T TIGR02254 169 SKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEEL 220 (224)
T ss_pred CchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHH
Confidence 999999999998 799999999999999987432211112345566666553
No 34
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.84 E-value=7.1e-20 Score=197.11 Aligned_cols=192 Identities=23% Similarity=0.333 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhhh---cCCCCCchHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSDHL---CKVKALPGANR 77 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~pgv~~ 77 (362)
|+..+.++|+++++++|++++.+++..++|.+..+++..+...++.+ .+.++..+.+.+.+...+ ....++||+.+
T Consensus 89 S~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~e 168 (1057)
T PLN02919 89 SEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYLEKYAKPNSGIGFPGALE 168 (1057)
T ss_pred ChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhhcccCccCccHHH
Confidence 67889999999999999999888888999999888887777666553 344444444444444332 13458999999
Q ss_pred HHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc-CCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhh
Q 017995 78 LIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG 156 (362)
Q Consensus 78 ~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~-~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d 156 (362)
+|+.|+++|++++|+||+....++..| +++++. .+|+.+++++++..+||+|++|..++++++++|++||||||+..|
T Consensus 169 lL~~Lk~~G~~l~IvSn~~~~~~~~~L-~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~IgDs~~D 247 (1057)
T PLN02919 169 LITQCKNKGLKVAVASSADRIKVDANL-AAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVIEDALAG 247 (1057)
T ss_pred HHHHHHhCCCeEEEEeCCcHHHHHHHH-HHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEEcCCHHH
Confidence 999999999999999999999999888 889996 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEEcCCCCcccc-ccchhHhhccccccc
Q 017995 157 VVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLR 194 (362)
Q Consensus 157 ~~aA~~aG~~~i~v~~~~~~~~~-~ssa~~vi~~l~el~ 194 (362)
+++|+++||++|+|.+.....+. ...++.+++++.++.
T Consensus 248 i~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~ 286 (1057)
T PLN02919 248 VQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNIS 286 (1057)
T ss_pred HHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCC
Confidence 99999999999999886432222 234566777777653
No 35
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.84 E-value=6.7e-20 Score=162.80 Aligned_cols=165 Identities=27% Similarity=0.331 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhh------------------cCCCHHHH----HHHHHHHhCCCCCHHHHHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKI------------------VGKTPLEE----AAIIVEDYGLPCAKHEFVNEVY 59 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~------------------~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 59 (362)
|+..+..+++++++++|++++.+++... .|.+..+. ++.++...+.+ +.+++...+.
T Consensus 14 ~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 92 (203)
T TIGR02252 14 LKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAGVP-DPESFEKIFE 92 (203)
T ss_pred eCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-CchhHHHHHH
Confidence 3456788999999999998765543211 15565433 33334444432 2233333333
Q ss_pred HHHHhhh--cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHH
Q 017995 60 SMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 137 (362)
Q Consensus 60 ~~~~~~~--~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~ 137 (362)
..+.... ....++||+.++|+.|+++|++++|+||++... ...+ +++|+..+|+.|+++++++.+||+|++|..++
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l-~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~ 170 (203)
T TIGR02252 93 ELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLL-EALGLLEYFDFVVTSYEVGAEKPDPKIFQEAL 170 (203)
T ss_pred HHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHH-HHCCcHHhcceEEeecccCCCCCCHHHHHHHH
Confidence 3333222 346899999999999999999999999998764 6677 88999999999999999999999999999999
Q ss_pred HHcCCCCCcEEEEecCH-hhHHHHHHcCCEEEE
Q 017995 138 KRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVA 169 (362)
Q Consensus 138 ~~~~~~p~~~l~igDs~-~d~~aA~~aG~~~i~ 169 (362)
++++++|++|+||||+. .|+++|+++|+.+|+
T Consensus 171 ~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 171 ERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred HHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 99999999999999998 899999999999874
No 36
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.84 E-value=1.5e-19 Score=169.05 Aligned_cols=192 Identities=26% Similarity=0.368 Sum_probs=140.0
Q ss_pred CH-HHHHHHHHHHHHHcCC-CC--CHHHHH--hhcCCCHHHHHHHHHHHhCCC--------CCH---HH----HHHHHHH
Q 017995 2 TD-GMFSEVLKTFLVKYGK-EW--DGREKH--KIVGKTPLEEAAIIVEDYGLP--------CAK---HE----FVNEVYS 60 (362)
Q Consensus 2 Se-~~~~~a~~~~l~~~g~-~~--~~~~~~--~~~g~~~~~~~~~~~~~~~~~--------~~~---~~----~~~~~~~ 60 (362)
|+ .++.++|+++++++|+ ++ +.+... ..+|.+.......+. ..+.+ .+. ++ +......
T Consensus 54 S~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 132 (286)
T PLN02779 54 TERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYFN-ENGWPTSTIEKAPKDEEERKELVDSLHDRKTE 132 (286)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHHH-HcCCCccccccCCccchhhHHHHHHHHHHHHH
Confidence 45 7899999999999998 33 334332 226666655544432 22221 111 12 2222234
Q ss_pred HHHhhhc--CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcC---CcCCCcEEEeCCCCCCCCCCHHHHHH
Q 017995 61 MFSDHLC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG---WNESFSVIVGSDEVRTGKPSPDIFLE 135 (362)
Q Consensus 61 ~~~~~~~--~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~g---l~~~f~~iv~~~d~~~gKp~p~~~~~ 135 (362)
.|..... .++++||+.++|+.|+++|++++|+||++...+...+ +.++ +...|+.+ +++++..+||+|++|..
T Consensus 133 ~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l-~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~ 210 (286)
T PLN02779 133 LFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIV-NTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNL 210 (286)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhccccccCceEEE-eccccCCCCCCHHHHHH
Confidence 4444432 3689999999999999999999999999999998877 5553 33444544 88888889999999999
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCCCccccccchhHhhccccccccc
Q 017995 136 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 196 (362)
Q Consensus 136 ~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el~~~ 196 (362)
++++++++|++|+||||+..|+++|+++|+.+|+|.++.........++.++.++.++...
T Consensus 211 a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~ 271 (286)
T PLN02779 211 AAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLE 271 (286)
T ss_pred HHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchh
Confidence 9999999999999999999999999999999999988654333334567788888776443
No 37
>PRK09449 dUMP phosphatase; Provisional
Probab=99.84 E-value=9.5e-20 Score=164.31 Aligned_cols=180 Identities=21% Similarity=0.309 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHhh--cCCCHH-----------HH----HHHHHHHhCCCCCHHHHHHHHHHHHHhhh-c
Q 017995 6 FSEVLKTFLVKYGKEWDGREKHKI--VGKTPL-----------EE----AAIIVEDYGLPCAKHEFVNEVYSMFSDHL-C 67 (362)
Q Consensus 6 ~~~a~~~~l~~~g~~~~~~~~~~~--~g~~~~-----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 67 (362)
..++++++++++|++.+.+.+..+ +|.+.. +. +..+...++. +.+++.. .+...+ .
T Consensus 19 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~ 92 (224)
T PRK09449 19 AFAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNV--TPGELNS----AFLNAMAE 92 (224)
T ss_pred hhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC--CHHHHHH----HHHHHHhh
Confidence 357888999999988776655443 222111 11 1112222222 1222222 232222 3
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCC-CCc
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME-PSS 146 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~-p~~ 146 (362)
..+++||+.++|+.|+ +|++++|+||++...++..+ +++|+.++|+.|+++++++..||+|++|..+++++|+. +++
T Consensus 93 ~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~ 170 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRL-ERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDRSR 170 (224)
T ss_pred cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHH-HhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCccc
Confidence 4789999999999999 57999999999999998888 88999999999999999999999999999999999985 479
Q ss_pred EEEEecCH-hhHHHHHHcCCEEEEEcCCCCccccccchhHhhcccccc
Q 017995 147 SLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 193 (362)
Q Consensus 147 ~l~igDs~-~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el 193 (362)
|+||||+. .|+++|+++|+.++++............++.+++++.++
T Consensus 171 ~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el 218 (224)
T PRK09449 171 VLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSEL 218 (224)
T ss_pred EEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHH
Confidence 99999998 699999999999999975322111111345666666553
No 38
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.83 E-value=1.3e-19 Score=180.47 Aligned_cols=187 Identities=14% Similarity=0.156 Sum_probs=148.4
Q ss_pred CHHHHHHHHHHHHHHcC------CCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh--cCCCCCc
Q 017995 2 TDGMFSEVLKTFLVKYG------KEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL--CKVKALP 73 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p 73 (362)
|++.+.++|++++++++ ...+.+.+.+.+|.+..+.++.+....+.+ ..++....+.+.+.... ...+++|
T Consensus 255 s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~p 333 (459)
T PRK06698 255 TDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLE-IREQTDAYFLERLIENIKSGKGALYP 333 (459)
T ss_pred chhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchh-HHHHHHHHHHHHhHHHHhhcCCCcCC
Confidence 67889999999999984 223567788899999999888877654432 12334444444444333 3578999
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecC
Q 017995 74 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 153 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs 153 (362)
|+.++|+.|+++|++++|+||++...++..+ +.+++.++|+.+++++++. .||+|+.|..++++++ |++|+||||+
T Consensus 334 G~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l-~~~~l~~~f~~i~~~d~v~-~~~kP~~~~~al~~l~--~~~~v~VGDs 409 (459)
T PRK06698 334 NVKEIFTYIKENNCSIYIASNGLTEYLRAIV-SYYDLDQWVTETFSIEQIN-SLNKSDLVKSILNKYD--IKEAAVVGDR 409 (459)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHCCcHhhcceeEecCCCC-CCCCcHHHHHHHHhcC--cceEEEEeCC
Confidence 9999999999999999999999999999999 8999999999999999884 4778899999998864 7899999999
Q ss_pred HhhHHHHHHcCCEEEEEcCCCCccccccchhHhhcccccc
Q 017995 154 VIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 193 (362)
Q Consensus 154 ~~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el 193 (362)
.+|+++|+++|+.++++.++.........++.++.++.++
T Consensus 410 ~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el 449 (459)
T PRK06698 410 LSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLEL 449 (459)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHH
Confidence 9999999999999999988543322233456777777664
No 39
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.83 E-value=2.3e-19 Score=158.72 Aligned_cols=133 Identities=20% Similarity=0.340 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCC
Q 017995 35 LEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF 114 (362)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f 114 (362)
.+.+..+...++.+.+.+. ... +.+.+...+++||+.++|+.|+++|++++++||++...++..+ +++|+.++|
T Consensus 62 ~~~~~~~~~~~g~~~~~~~-~~~----~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~gl~~~f 135 (198)
T TIGR01428 62 REALRYLLGRLGLEDDESA-ADR----LAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLV-KHAGLDDPF 135 (198)
T ss_pred HHHHHHHHHHcCCCCCHHH-HHH----HHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHCCChhhh
Confidence 3555666777777644332 222 2333356789999999999999999999999999999999888 889999999
Q ss_pred cEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCC
Q 017995 115 SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 115 ~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~ 173 (362)
+.|+++++++..||+|++|..++++++++|++|++|||+..|+++|+++|+.+|+|...
T Consensus 136 d~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~ 194 (198)
T TIGR01428 136 DAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFVASNPWDLGGAKKFGFKTAWVNRP 194 (198)
T ss_pred heeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999773
No 40
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.81 E-value=1.5e-18 Score=153.50 Aligned_cols=160 Identities=14% Similarity=0.178 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHHcC-CCCCHHHHHhhcCCCH---------HHHHHHHHHHhC----CCCCHHHHHHHHHHHHHhhh-
Q 017995 2 TDGMFSEVLKTFLVKYG-KEWDGREKHKIVGKTP---------LEEAAIIVEDYG----LPCAKHEFVNEVYSMFSDHL- 66 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g-~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~- 66 (362)
|++.+..+++++++++| .+++.+.+.++.|.+. ....+.+..... .....+++.+.+.+.|....
T Consensus 14 s~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (197)
T TIGR01548 14 VSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAVTAQFQALYQGVGY 93 (197)
T ss_pred chHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHHHHHHHHHHcCCcc
Confidence 67889999999999998 5678788888887543 112222211111 12344566666666665421
Q ss_pred ---------cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHH
Q 017995 67 ---------CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 137 (362)
Q Consensus 67 ---------~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~ 137 (362)
....+.+++.++|+.|+++|++++|+||+++..++..| +++|+..+|+.++++++... ||+|+.|..++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~ 171 (197)
T TIGR01548 94 YRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFL-TTHGLEILFPVQIWMEDCPP-KPNPEPLILAA 171 (197)
T ss_pred cccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHH-HHcCchhhCCEEEeecCCCC-CcCHHHHHHHH
Confidence 12345667799999999999999999999999999999 89999999999999999877 99999999999
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHc
Q 017995 138 KRLNMEPSSSLVIEDSVIGVVAGKAA 163 (362)
Q Consensus 138 ~~~~~~p~~~l~igDs~~d~~aA~~a 163 (362)
++++++|++|+||||+.+|+.+|+++
T Consensus 172 ~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 172 KALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred HHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 99999999999999999999999875
No 41
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.81 E-value=9.1e-19 Score=155.22 Aligned_cols=136 Identities=15% Similarity=0.188 Sum_probs=116.2
Q ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc
Q 017995 32 KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 111 (362)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~ 111 (362)
.+..+.+..+.+.++.+.+.+++...+.+.+ ..++||+.++|+.|+++|++++|+||++...+...+....++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~ 125 (199)
T PRK09456 52 ISDEAFAEALCHEMALSLSYEQFAHGWQAVF------VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVR 125 (199)
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH------hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHH
Confidence 5677777888888887666555555444433 3689999999999999999999999999887766552334788
Q ss_pred CCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCC
Q 017995 112 ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 112 ~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~ 173 (362)
.+|+.++++++++.+||+|++|..+++++|++|++|+||||+..|+++|+++|+.++.+...
T Consensus 126 ~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~ 187 (199)
T PRK09456 126 AAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVFFDDNADNIEAANALGITSILVTDK 187 (199)
T ss_pred HhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence 89999999999999999999999999999999999999999999999999999999998763
No 42
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.80 E-value=1.6e-18 Score=156.50 Aligned_cols=107 Identities=15% Similarity=0.235 Sum_probs=100.3
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~ 146 (362)
.+..++||+.++|+.|+++|++++|+||++...++..+ +++|+.++|+.|+++++++.+||+|++|..+++++|++|++
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 168 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKL-EHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER 168 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHH-HHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence 56899999999999999999999999999999999888 88999999999999999999999999999999999999999
Q ss_pred EEEEecCHhhHHHHHHcCCE-EEEEcCCC
Q 017995 147 SLVIEDSVIGVVAGKAAGME-VVAVPSLP 174 (362)
Q Consensus 147 ~l~igDs~~d~~aA~~aG~~-~i~v~~~~ 174 (362)
|+||||+..|+++|+++|+. +++|....
T Consensus 169 ~l~igDs~~di~aA~~aG~~~~~~v~~~~ 197 (224)
T PRK14988 169 TLFIDDSEPILDAAAQFGIRYCLGVTNPD 197 (224)
T ss_pred EEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence 99999999999999999998 46676643
No 43
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.79 E-value=7.3e-18 Score=146.66 Aligned_cols=135 Identities=33% Similarity=0.498 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHH------HHHHHHhhhcC--CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHH
Q 017995 34 PLEEAAIIVEDYGLPCAKHEFVNE------VYSMFSDHLCK--VKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS 105 (362)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~ 105 (362)
.....+.+...++.......+... ....+...... .+++||+.++|+.|+++|++++++||++... ...+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~- 118 (183)
T TIGR01509 41 LELALRRWKEKYGRTMSAEDFYLLYENADIKQLFYDAILDEEKLKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLV- 118 (183)
T ss_pred HHHHhhccccccCCCCCcHHHHHHHhHHHHHHHHHHHHHhccCCccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHH-
Confidence 444444454446655444443322 33344443333 7899999999999999999999999999988 5555
Q ss_pred hhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEE
Q 017995 106 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 106 ~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v 170 (362)
.++|+.++|+.++++++++.+||+|+.|..++++++++|++|++|||+..|+++|+++|+.+|+|
T Consensus 119 ~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 119 QELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred HhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence 56899999999999999999999999999999999999999999999999999999999999875
No 44
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.78 E-value=4.9e-18 Score=151.75 Aligned_cols=104 Identities=22% Similarity=0.302 Sum_probs=93.5
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHh--HHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRAT--IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 145 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~--i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~ 145 (362)
..+++||+.++|+.|+++|++++|+||++... ....+ ...++.++|+.|+++++.+..||+|++|..+++++|++|+
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~-~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~~~ 170 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEAL-LPGDIMALFDAVVESCLEGLRKPDPRIYQLMLERLGVAPE 170 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHh-hhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHHcCCCHH
Confidence 57899999999999999999999999987654 22233 4567889999999999999999999999999999999999
Q ss_pred cEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 146 SSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 146 ~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
+|+||||+..|+.+|+++|+.++++..
T Consensus 171 ~~l~i~D~~~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 171 ECVFLDDLGSNLKPAAALGITTIKVSD 197 (211)
T ss_pred HeEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 999999999999999999999999866
No 45
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.76 E-value=9.9e-18 Score=152.76 Aligned_cols=150 Identities=17% Similarity=0.210 Sum_probs=112.9
Q ss_pred HHHHHHHHhCCCCCHH-HHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCc
Q 017995 37 EAAIIVEDYGLPCAKH-EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 115 (362)
Q Consensus 37 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~ 115 (362)
.+..+...+|.+.+.. .........+......+.++||+.++|+.|++. ++++++||++.. + +.+||.++|+
T Consensus 79 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~-~~~gl~~~fd 151 (238)
T PRK10748 79 AIEQAMLDAGLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----P-ELFGLGDYFE 151 (238)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----H-HHCCcHHhhc
Confidence 3455566677653221 122222233443335689999999999999975 999999998765 3 6689999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCEEEEEcCCCCc----cccccchhHhhccc
Q 017995 116 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQ----THRYTAADEVINSL 190 (362)
Q Consensus 116 ~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs-~~d~~aA~~aG~~~i~v~~~~~~----~~~~ssa~~vi~~l 190 (362)
.|+++++++..||+|++|..++++++++|++|+||||+ ..|+.+|+++|+.++++...... ....-.++..+++|
T Consensus 152 ~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l 231 (238)
T PRK10748 152 FVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRL 231 (238)
T ss_pred eeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCH
Confidence 99999999999999999999999999999999999999 59999999999999999774321 01001245566666
Q ss_pred ccc
Q 017995 191 LDL 193 (362)
Q Consensus 191 ~el 193 (362)
.++
T Consensus 232 ~el 234 (238)
T PRK10748 232 ASL 234 (238)
T ss_pred HHH
Confidence 553
No 46
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.75 E-value=1.8e-17 Score=144.92 Aligned_cols=156 Identities=20% Similarity=0.216 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHH-----HcCCCCCHH-HHH----hhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCC
Q 017995 3 DGMFSEVLKTFLV-----KYGKEWDGR-EKH----KIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKAL 72 (362)
Q Consensus 3 e~~~~~a~~~~l~-----~~g~~~~~~-~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (362)
...+..+++++++ ++|++.... .+. ...|.+..... ...+ .+.+++...+.+. ......+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~----~~~~--~~~~~~~~~~~~~--~~~~~~~~~ 86 (184)
T TIGR01993 15 SAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTTLAGLM----ILHE--IDADEYLRYVHGR--LPYEKLKPD 86 (184)
T ss_pred cccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchHHHHHH----HhhC--CCHHHHHHHHhcc--CCHHhCCCC
Confidence 3456677776654 567654322 222 23454444432 2222 2333333333221 112357899
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCC----CCCCHHHHHHHHHHcCCCCCcEE
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT----GKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~----gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
||+.++|+.|+ ++++|+||++...+...+ +.+|+.++|+.|+++++... .||+|++|..+++++|++|++|+
T Consensus 87 ~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l-~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l 162 (184)
T TIGR01993 87 PELRNLLLRLP---GRKIIFTNGDRAHARRAL-NRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPERAI 162 (184)
T ss_pred HHHHHHHHhCC---CCEEEEeCCCHHHHHHHH-HHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccceE
Confidence 99999999997 489999999999999999 88999999999999999887 59999999999999999999999
Q ss_pred EEecCHhhHHHHHHcCCEEEEE
Q 017995 149 VIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 149 ~igDs~~d~~aA~~aG~~~i~v 170 (362)
||||+..|+++|+++|+++++|
T Consensus 163 ~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 163 FFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred EEeCCHHHHHHHHHcCCEEeeC
Confidence 9999999999999999999875
No 47
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.74 E-value=1.3e-17 Score=144.88 Aligned_cols=124 Identities=24% Similarity=0.304 Sum_probs=97.5
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCCh---------------HhHHHHHHhhcCCcCCCcEEEeC-----------
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS----------- 120 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~---------------~~i~~~L~~~~gl~~~f~~iv~~----------- 120 (362)
.+++++||+.++|+.|+++|++++|+||++. ..+...+ ..+++. |+.++.+
T Consensus 23 ~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~--~~~i~~~~~~~~~~~~~~ 99 (176)
T TIGR00213 23 DNFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSL-AERDVD--LDGIYYCPHHPEGVEEFR 99 (176)
T ss_pred HHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCCC--ccEEEECCCCCccccccc
Confidence 3578999999999999999999999999985 3333445 555554 6666543
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEE-EEEcCCCCccccc-cchhHhhcccccc
Q 017995 121 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHRY-TAADEVINSLLDL 193 (362)
Q Consensus 121 ~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~-i~v~~~~~~~~~~-ssa~~vi~~l~el 193 (362)
+++..+||+|++|..++++++++|++|+||||+.+|+++|+++|+.+ +++.++....... ..++.+++++.++
T Consensus 100 ~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el 174 (176)
T TIGR00213 100 QVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADL 174 (176)
T ss_pred CCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHh
Confidence 35567899999999999999999999999999999999999999998 7888764322211 2357777776654
No 48
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.73 E-value=1.7e-16 Score=134.51 Aligned_cols=142 Identities=24% Similarity=0.374 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCCchHHHHHHH
Q 017995 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKH 81 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~ 81 (362)
|...+..+|+++++++|. +.+.+....|.......+ +.. ..+++. ........+||+.++|+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~-~~~------~~~~~~--------~~~~~~~~~~g~~e~l~~ 75 (154)
T TIGR01549 13 SSFAIRRAFEETLEEFGE--DFQALKALRGLAEELLYR-IAT------SFEELL--------GYDAEEAYIRGAADLLKR 75 (154)
T ss_pred cHHHHHHHHHHHHHHhcc--cHHHHHHHHccChHHHHH-HHH------HHHHHh--------CcchhheeccCHHHHHHH
Confidence 456889999999999985 444555556554333211 111 111111 122356678999999999
Q ss_pred HHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHH
Q 017995 82 LSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 161 (362)
Q Consensus 82 L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~ 161 (362)
|+++|++++|+||++...+...+ +.+ +..+|+.+++++++. +||+|+.|..++++++++| +|+||||+..|+++|+
T Consensus 76 L~~~g~~~~i~T~~~~~~~~~~~-~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~iGDs~~Di~aa~ 151 (154)
T TIGR01549 76 LKEAGIKLGIISNGSLRAQKLLL-RKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVLHVGDNLNDIEGAR 151 (154)
T ss_pred HHHCcCeEEEEeCCchHHHHHHH-HHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEEEeCCHHHHHHHH
Confidence 99999999999999999999888 666 788999999999988 9999999999999999999 9999999999999999
Q ss_pred HcC
Q 017995 162 AAG 164 (362)
Q Consensus 162 ~aG 164 (362)
++|
T Consensus 152 ~aG 154 (154)
T TIGR01549 152 NAG 154 (154)
T ss_pred Hcc
Confidence 987
No 49
>PRK06769 hypothetical protein; Validated
Probab=99.72 E-value=2.4e-17 Score=142.86 Aligned_cols=125 Identities=14% Similarity=0.222 Sum_probs=97.0
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChH--------hHHHHHHhhcCCcCCCcEEE-eCCCCCCCCCCHHHHHHHHH
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRA--------TIESKISYQHGWNESFSVIV-GSDEVRTGKPSPDIFLEAAK 138 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~--------~i~~~L~~~~gl~~~f~~iv-~~~d~~~gKp~p~~~~~~~~ 138 (362)
.+.++||+.++|+.|+++|++++|+||++.. .+...+ +.+|+.++|..+. +++++...||+|++|..+++
T Consensus 26 ~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~ 104 (173)
T PRK06769 26 SFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQEL-KGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAE 104 (173)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHH-HhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999998752 122335 5677755443332 45667789999999999999
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCCCcc------cc--ccchhHhhcccccc
Q 017995 139 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT------HR--YTAADEVINSLLDL 193 (362)
Q Consensus 139 ~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~~~~------~~--~ssa~~vi~~l~el 193 (362)
+++++|++|+||||+..|+++|+++|+.++++.++.... +. ...++.+++++.++
T Consensus 105 ~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el 167 (173)
T PRK06769 105 KHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDA 167 (173)
T ss_pred HcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHH
Confidence 999999999999999999999999999999998854221 11 12345666666553
No 50
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.70 E-value=2.2e-16 Score=142.43 Aligned_cols=123 Identities=28% Similarity=0.398 Sum_probs=106.2
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 147 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~ 147 (362)
..+++|++.++|+.|+++ ++++++||+....+...+ .++||.++||.|+++++++..||+|++|..+++++|++|++|
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l-~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKL-RQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHH-HHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 589999999999999999 999999999888888888 889999999999999999999999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCEEEEEcCCCCcc-ccccchhHhhccccc
Q 017995 148 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT-HRYTAADEVINSLLD 192 (362)
Q Consensus 148 l~igDs~-~d~~aA~~aG~~~i~v~~~~~~~-~~~ssa~~vi~~l~e 192 (362)
+||||+. +|+.+|+++||++|++....... .....++..+.++.+
T Consensus 175 l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~ 221 (229)
T COG1011 175 LFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAE 221 (229)
T ss_pred EEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHH
Confidence 9999999 78899999999999998743211 011233455555554
No 51
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.70 E-value=8.8e-17 Score=139.29 Aligned_cols=149 Identities=17% Similarity=0.263 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHHHcCCC---CCH-----HHHHhhcCC--CHHH----HHHHHHHHhCCCCCHHHHHHHHHHHHHhhhc
Q 017995 2 TDGMFSEVLKTFLVKYGKE---WDG-----REKHKIVGK--TPLE----EAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC 67 (362)
Q Consensus 2 Se~~~~~a~~~~l~~~g~~---~~~-----~~~~~~~g~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (362)
|+..+..+++.+++.++.. ++. .......|. ...+ .++.+...++.+.+.+ .. +.+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~----~~~~~~~~ 87 (175)
T TIGR01493 13 VHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDAEPK-YG----ERLRDAYK 87 (175)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCCCHH-HH----HHHHHHHh
Confidence 4567778888887775521 111 112233332 2223 5677777788775543 22 23333334
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 147 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~ 147 (362)
.+.++||+.++|+ +++|+||++...++..+ +++++.++|+.|+++++++..||+|++|..+++++|++|++|
T Consensus 88 ~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~ 159 (175)
T TIGR01493 88 NLPPWPDSAAALA-------RVAILSNASHWAFDQFA-QQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV 159 (175)
T ss_pred cCCCCCchHHHHH-------HHhhhhCCCHHHHHHHH-HHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence 6789999999998 37899999999999888 889999999999999999999999999999999999999999
Q ss_pred EEEecCHhhHHHHHHc
Q 017995 148 LVIEDSVIGVVAGKAA 163 (362)
Q Consensus 148 l~igDs~~d~~aA~~a 163 (362)
+||||+.+|+.+|+++
T Consensus 160 l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 160 LMVAAHQWDLIGARKF 175 (175)
T ss_pred EeEecChhhHHHHhcC
Confidence 9999999999999874
No 52
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.69 E-value=1.1e-16 Score=139.70 Aligned_cols=128 Identities=27% Similarity=0.315 Sum_probs=98.9
Q ss_pred HhhhcCCCCCchHHHHHHHHHHCCCcEEEEcCCCh---------------HhHHHHHHhhcCCcCCCcEEEeC-----CC
Q 017995 63 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----DE 122 (362)
Q Consensus 63 ~~~~~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~---------------~~i~~~L~~~~gl~~~f~~iv~~-----~d 122 (362)
......+.++||+.++|+.|+++|++++|+||++. +.+...+ +++|+ .|+.++.+ ++
T Consensus 22 ~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~f~~i~~~~~~~~~~ 98 (181)
T PRK08942 22 VKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSL-ADRGG--RLDGIYYCPHHPEDG 98 (181)
T ss_pred cCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCC
Confidence 33345678999999999999999999999999873 3334445 56666 47777654 35
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCCCcccc-ccch--hHhhcccccc
Q 017995 123 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAA--DEVINSLLDL 193 (362)
Q Consensus 123 ~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~~~~~~-~ssa--~~vi~~l~el 193 (362)
+..+||+|++|..++++++++|++|+||||+.+|+.+|+++|+.++++.++...... ...+ +.++.++.++
T Consensus 99 ~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el 172 (181)
T PRK08942 99 CDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADL 172 (181)
T ss_pred CcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHH
Confidence 678899999999999999999999999999999999999999999999875432111 1123 5566666553
No 53
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.69 E-value=1.3e-16 Score=136.44 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=93.4
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCC---------------hHhHHHHHHhhcCCcCCCcEEE-e----CCCCCCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIV-G----SDEVRTG 126 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~---------------~~~i~~~L~~~~gl~~~f~~iv-~----~~d~~~g 126 (362)
..++++||+.++|+.|+++|++++|+||++ ...+...+ +.+|+. |+.++ + ++++...
T Consensus 26 ~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--fd~ii~~~~~~~~~~~~~ 102 (161)
T TIGR01261 26 EKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIF-RSQGII--FDDVLICPHFPDDNCDCR 102 (161)
T ss_pred HHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHCCCc--eeEEEECCCCCCCCCCCC
Confidence 457899999999999999999999999973 55677777 888996 77665 4 5888889
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCC
Q 017995 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 127 Kp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~ 174 (362)
||+|+++..++++++++|++|+||||+.+|+++|+++|+.++++.+..
T Consensus 103 KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 103 KPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred CCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhh
Confidence 999999999999999999999999999999999999999999998743
No 54
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.69 E-value=1.9e-15 Score=135.40 Aligned_cols=113 Identities=13% Similarity=0.113 Sum_probs=96.0
Q ss_pred HHHHHHhhhcCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhc---CCcCCCcEEEeCCCCCCCCCCHHHHH
Q 017995 58 VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---GWNESFSVIVGSDEVRTGKPSPDIFL 134 (362)
Q Consensus 58 ~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~---gl~~~f~~iv~~~d~~~gKp~p~~~~ 134 (362)
+.+.|.....+..++||+.++|+.|+++|++++|+||++...++..+ ++. +|.++|+.++.. ...+||+|+.|.
T Consensus 83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~-~~~~~~~L~~~f~~~fd~--~~g~KP~p~~y~ 159 (220)
T TIGR01691 83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLF-GHSDAGNLTPYFSGYFDT--TVGLKTEAQSYV 159 (220)
T ss_pred HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-hhccccchhhhcceEEEe--CcccCCCHHHHH
Confidence 45556554456789999999999999999999999999999877766 554 677777766542 223699999999
Q ss_pred HHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCC
Q 017995 135 EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 135 ~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~ 173 (362)
.+++++|++|++|+||||+..|+++|+++||.++++.+.
T Consensus 160 ~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~ 198 (220)
T TIGR01691 160 KIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLVRP 198 (220)
T ss_pred HHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECC
Confidence 999999999999999999999999999999999998764
No 55
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.68 E-value=1.2e-16 Score=134.85 Aligned_cols=104 Identities=27% Similarity=0.390 Sum_probs=87.0
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCCh---------------HhHHHHHHhhcCCcCCCcEEEe----CCCCCCCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVG----SDEVRTGK 127 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~---------------~~i~~~L~~~~gl~~~f~~iv~----~~d~~~gK 127 (362)
..++++||+.++|+.|+++|++++|+||+++ ..+...+ +++++... ..+++ +++....|
T Consensus 24 ~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~-~~~~~~~~~~~~~~~~K 101 (147)
T TIGR01656 24 DDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELL-RQLGVAVD-GVLFCPHHPADNCSCRK 101 (147)
T ss_pred HHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHH-HhCCCcee-EEEECCCCCCCCCCCCC
Confidence 3468999999999999999999999999874 3455556 77887522 12222 45556789
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 128 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 128 p~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
|+|++|..++++++++|++|+||||+..|+++|+++|+++++|+.
T Consensus 102 P~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~ 146 (147)
T TIGR01656 102 PKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVD 146 (147)
T ss_pred CCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecC
Confidence 999999999999999999999999999999999999999999975
No 56
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.68 E-value=6.8e-16 Score=136.44 Aligned_cols=171 Identities=13% Similarity=0.132 Sum_probs=120.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-hhcCCCCCchHHHHHHHHHHC
Q 017995 7 SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD-HLCKVKALPGANRLIKHLSCH 85 (362)
Q Consensus 7 ~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pgv~~~L~~L~~~ 85 (362)
..++.++++++|++. +++...+|.+....+... ++. +.+.+.+.+..++.. ......++||+.++|+.|++.
T Consensus 17 ~~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~pG~~e~L~~L~~~ 89 (197)
T PHA02597 17 QSGLPYFAQKYNIPT--DHILKMIQDERFRDPGEL---FGC--DQELAKKLIEKYNNSDFIRYLSAYDDALDVINKLKED 89 (197)
T ss_pred hhccHHHHHhcCCCH--HHHHHHHhHhhhcCHHHH---hcc--cHHHHHHHhhhhhHHHHHHhccCCCCHHHHHHHHHhc
Confidence 456788888999753 555566665444333332 222 222332323333222 225678999999999999987
Q ss_pred CCcEEEEcCCChHhHHHHHHhhcCCcC----CCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHH
Q 017995 86 GVPMALASNSHRATIESKISYQHGWNE----SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 161 (362)
Q Consensus 86 g~~~~i~S~~~~~~i~~~L~~~~gl~~----~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~ 161 (362)
+++.++||++.......+ +.+++.. +|+.++++++. ||+|+.|..+++++| |++|+||||+..|+++|+
T Consensus 90 -~~~~i~Tn~~~~~~~~~~-~~~~l~~~f~~~f~~i~~~~~~---~~kp~~~~~a~~~~~--~~~~v~vgDs~~di~aA~ 162 (197)
T PHA02597 90 -YDFVAVTALGDSIDALLN-RQFNLNALFPGAFSEVLMCGHD---ESKEKLFIKAKEKYG--DRVVCFVDDLAHNLDAAH 162 (197)
T ss_pred -CCEEEEeCCccchhHHHH-hhCCHHHhCCCcccEEEEeccC---cccHHHHHHHHHHhC--CCcEEEeCCCHHHHHHHH
Confidence 578888888776655455 6667654 55778887764 677899999999999 899999999999999999
Q ss_pred Hc--CCEEEEEcCCCCccccccchhHhhcccccc
Q 017995 162 AA--GMEVVAVPSLPKQTHRYTAADEVINSLLDL 193 (362)
Q Consensus 162 ~a--G~~~i~v~~~~~~~~~~ssa~~vi~~l~el 193 (362)
++ ||+++++.++.. .....+++.+.++.++
T Consensus 163 ~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~ 194 (197)
T PHA02597 163 EALSQLPVIHMLRGER--DHIPKLAHRVKSWNDI 194 (197)
T ss_pred HHHcCCcEEEecchhh--ccccchhhhhccHHHH
Confidence 99 999999988653 2223456777777764
No 57
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.67 E-value=2e-16 Score=136.23 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=97.0
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCC-ChHhHHHHHHhhcCCc---------CCCcEEEeCCCCCCCCCCHHHHHHH
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWN---------ESFSVIVGSDEVRTGKPSPDIFLEA 136 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~-~~~~i~~~L~~~~gl~---------~~f~~iv~~~d~~~gKp~p~~~~~~ 136 (362)
.++.++||+.++|+.|+++|++++|+||+ ....++..+ +.+++. ++|+.++++++....||.+.++..+
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L-~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~ 120 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEIL-GTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV 120 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHH-HhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHh
Confidence 46889999999999999999999999998 888888888 889998 9999999999877778888888877
Q ss_pred HHHc--CCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCC
Q 017995 137 AKRL--NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 137 ~~~~--~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~ 174 (362)
.+.+ +++|++|+||||+..|+++|+++|+.++++.++.
T Consensus 121 ~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~ 160 (174)
T TIGR01685 121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGM 160 (174)
T ss_pred hhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCc
Confidence 7777 8999999999999999999999999999997753
No 58
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.64 E-value=2.1e-15 Score=134.69 Aligned_cols=165 Identities=24% Similarity=0.297 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHh------------------hcC-CCHHHHHHHHHHHhCCCCCH---HHHHHHH-HHHH
Q 017995 6 FSEVLKTFLVKYGKEWDGREKHK------------------IVG-KTPLEEAAIIVEDYGLPCAK---HEFVNEV-YSMF 62 (362)
Q Consensus 6 ~~~a~~~~l~~~g~~~~~~~~~~------------------~~g-~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~ 62 (362)
....+.++.+.+|++.+.+.+.. +.| .+..+.+..+.......... ++....+ ...|
T Consensus 25 ~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~f~~~~~~~~~~~~~~~~~~~~ 104 (237)
T KOG3085|consen 25 VMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVESTFGKAGIDYEEELLENFSFRLF 104 (237)
T ss_pred cHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHHhccccchhHHHHHhhhhhhee
Confidence 45677888889998865544321 122 35666666555433222121 2222111 1222
Q ss_pred Hhhh-cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcC
Q 017995 63 SDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 141 (362)
Q Consensus 63 ~~~~-~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~ 141 (362)
.... ......+++.++|+.||++|..++++||.+... +..+ ..+++..+||.++.|.+.+..||+|++|+.++++++
T Consensus 105 s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~-~~~l-~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~ 182 (237)
T KOG3085|consen 105 STFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRL-RLLL-LPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLG 182 (237)
T ss_pred ccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHH-HHHh-hccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhC
Confidence 2221 357788899999999999999999999998886 4556 788999999999999999999999999999999999
Q ss_pred CCCCcEEEEecCH-hhHHHHHHcCCEEEEEcC
Q 017995 142 MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 142 ~~p~~~l~igDs~-~d~~aA~~aG~~~i~v~~ 172 (362)
+.|++|++|||.. +|+++|+++||..+.|..
T Consensus 183 v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~ 214 (237)
T KOG3085|consen 183 VKPEECVHIGDLLENDYEGARNLGWHAILVDN 214 (237)
T ss_pred CChHHeEEecCccccccHhHHHcCCEEEEEcc
Confidence 9999999999999 899999999999999975
No 59
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.61 E-value=5.1e-15 Score=122.38 Aligned_cols=100 Identities=23% Similarity=0.418 Sum_probs=87.3
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCC--------hHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHH
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSH--------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 139 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~--------~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~ 139 (362)
...++||+.++|+.|+++|++++++||++ .+.++..+ +++++.. +.++.+. ...||+|+.|..++++
T Consensus 23 ~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l-~~~~l~~--~~~~~~~--~~~KP~~~~~~~~~~~ 97 (132)
T TIGR01662 23 ERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRL-EELGVPI--DVLYACP--HCRKPKPGMFLEALKR 97 (132)
T ss_pred HheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHH-HHCCCCE--EEEEECC--CCCCCChHHHHHHHHH
Confidence 46889999999999999999999999999 77888888 8888853 3333333 5679999999999999
Q ss_pred c-CCCCCcEEEEec-CHhhHHHHHHcCCEEEEEcC
Q 017995 140 L-NMEPSSSLVIED-SVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 140 ~-~~~p~~~l~igD-s~~d~~aA~~aG~~~i~v~~ 172 (362)
+ +++|++|+|||| +..|+.+|+++|+.+|++.+
T Consensus 98 ~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~~ 132 (132)
T TIGR01662 98 FNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVAP 132 (132)
T ss_pred cCCCChhheEEEcCCCcccHHHHHHCCCeEEEeeC
Confidence 9 599999999999 78999999999999999863
No 60
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.55 E-value=2.3e-14 Score=123.19 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=84.0
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChH------------hHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHH
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRA------------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 138 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~------------~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~ 138 (362)
++||+.++|+.|+++|++++|+||++.. .++..+ +.+|+.. +.++++++....||+|+.+..+++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l-~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~ 119 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFL-EKLKVPI--QVLAATHAGLYRKPMTGMWEYLQS 119 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHH-HHcCCCE--EEEEecCCCCCCCCccHHHHHHHH
Confidence 7899999999999999999999998764 456667 8888843 567777776678999999999999
Q ss_pred HcC--CCCCcEEEEecCH--------hhHHHHHHcCCEEEE
Q 017995 139 RLN--MEPSSSLVIEDSV--------IGVVAGKAAGMEVVA 169 (362)
Q Consensus 139 ~~~--~~p~~~l~igDs~--------~d~~aA~~aG~~~i~ 169 (362)
+++ ++|++|+||||+. .|+++|+++|+.++.
T Consensus 120 ~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 120 QYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 999 9999999999996 699999999999864
No 61
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.53 E-value=7.4e-14 Score=120.64 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=86.6
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCC-hHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSH-RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~-~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~ 146 (362)
...++||+.++|+.|+++|++++|+||++ ...+...+ +.+++..+ ....||+|++|..++++++++|++
T Consensus 41 ~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~-~~~gl~~~---------~~~~KP~p~~~~~~l~~~~~~~~~ 110 (170)
T TIGR01668 41 HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVE-KALGIPVL---------PHAVKPPGCAFRRAHPEMGLTSEQ 110 (170)
T ss_pred CCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHH-HHcCCEEE---------cCCCCCChHHHHHHHHHcCCCHHH
Confidence 45899999999999999999999999998 56666555 66765321 134699999999999999999999
Q ss_pred EEEEecCH-hhHHHHHHcCCEEEEEcCCCCcccc
Q 017995 147 SLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR 179 (362)
Q Consensus 147 ~l~igDs~-~d~~aA~~aG~~~i~v~~~~~~~~~ 179 (362)
|+||||+. .|+.+|+++|+.+++|.++....+.
T Consensus 111 ~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~~ 144 (170)
T TIGR01668 111 VAVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQW 144 (170)
T ss_pred EEEECCcchHHHHHHHHcCCeEEEEccCcCCccc
Confidence 99999998 7999999999999999887644443
No 62
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.51 E-value=1.3e-13 Score=131.23 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=91.3
Q ss_pred HhhhcCCCCCchHHHHHHHHHHCCCcEEEEcCC---------------ChHhHHHHHHhhcCCcCCCcEEEe-----CCC
Q 017995 63 SDHLCKVKALPGANRLIKHLSCHGVPMALASNS---------------HRATIESKISYQHGWNESFSVIVG-----SDE 122 (362)
Q Consensus 63 ~~~~~~~~~~pgv~~~L~~L~~~g~~~~i~S~~---------------~~~~i~~~L~~~~gl~~~f~~iv~-----~~d 122 (362)
.......+++||+.++|+.|+++|++++|+||+ +...+...+ +.+++. |+.++. +++
T Consensus 23 ~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL-~~~gl~--fd~i~i~~~~~sd~ 99 (354)
T PRK05446 23 VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIF-ESQGIK--FDEVLICPHFPEDN 99 (354)
T ss_pred ccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHH-HHcCCc--eeeEEEeCCcCccc
Confidence 334457899999999999999999999999995 344555566 677773 666643 367
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 123 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 123 ~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
+.++||+|+++..++++++++|++|+||||+.+|+++|+++|+++++++.
T Consensus 100 ~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 100 CSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence 77899999999999999999999999999999999999999999999966
No 63
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.50 E-value=2.7e-14 Score=120.52 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=87.7
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC-CCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~-~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~ 146 (362)
.+.++||+.++|+.|+ ++++++|+|++....++..+ +++++.. +|+.|++++++..+||+ |..++++++.+|++
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il-~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~ 117 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVL-DLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSN 117 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHH-HHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhc
Confidence 4678999999999999 57999999999999999988 8888865 56999999999999997 89999999999999
Q ss_pred EEEEecCHhhHHHHHHcCCEEE
Q 017995 147 SLVIEDSVIGVVAGKAAGMEVV 168 (362)
Q Consensus 147 ~l~igDs~~d~~aA~~aG~~~i 168 (362)
|+||||+..|+++|+++|+.+-
T Consensus 118 ~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 118 VIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred EEEEECCHHHhhcCccCEEEec
Confidence 9999999999999999988764
No 64
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.48 E-value=1.6e-13 Score=129.28 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=95.8
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC-CCcEEEeCC-------CCCCCCCCHHHHHHHHHHc
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSD-------EVRTGKPSPDIFLEAAKRL 140 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~-~f~~iv~~~-------d~~~gKp~p~~~~~~~~~~ 140 (362)
..++||+.++|+.|+++|++++++|+.+....+..+ +.+++.+ +|+.+++.+ +...+||+|+++..+++++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l-~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTV-EWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHH-HHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 468999999999999999999999999999988888 8889987 999999988 4556899999999999999
Q ss_pred CC-CCCcEEEEecCHhhHHHHHHcCCEEEEEcCC
Q 017995 141 NM-EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 141 ~~-~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~ 173 (362)
+. ++++|+||||+.+|+++|+++|+.+++|.++
T Consensus 265 ~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 265 IAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred hccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence 88 6799999999999999999999999999774
No 65
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.46 E-value=9e-13 Score=118.34 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=87.2
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEE-------eCC---CCCCCCCCHHHHHHH
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV-------GSD---EVRTGKPSPDIFLEA 136 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv-------~~~---d~~~gKp~p~~~~~~ 136 (362)
...+++||+.++|+.|+++|++++|+|++....++..+ +.+|+..+|...+ ++. +...++|+|..+..+
T Consensus 82 ~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (219)
T TIGR00338 82 ENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVK-DKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLIL 160 (219)
T ss_pred hcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHH
Confidence 45789999999999999999999999999999999888 8889988775322 221 223457789999999
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 137 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 137 ~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
+++++++|++|++|||+.+|+.+|+++|+.+.+
T Consensus 161 ~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~ 193 (219)
T TIGR00338 161 LRKEGISPENTVAVGDGANDLSMIKAAGLGIAF 193 (219)
T ss_pred HHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEe
Confidence 999999999999999999999999999998643
No 66
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.45 E-value=6.3e-13 Score=117.39 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=90.7
Q ss_pred hcCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCC----------HHHHHH
Q 017995 66 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS----------PDIFLE 135 (362)
Q Consensus 66 ~~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~----------p~~~~~ 135 (362)
..+++++||+.++|+.|+++|++++|+|++...+++..+ +.+|+..+|..++..++.+..+|+ ++.+..
T Consensus 76 ~~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~ 154 (201)
T TIGR01491 76 FKEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVA-EKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVER 154 (201)
T ss_pred HHhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHH
Confidence 345789999999999999999999999999999999988 888998888776666555443443 257888
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 136 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 136 ~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
+++++++++++|+||||+.+|+.+|+.+|+.++..+.
T Consensus 155 ~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~ 191 (201)
T TIGR01491 155 LKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDE 191 (201)
T ss_pred HHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCC
Confidence 8899999999999999999999999999998877654
No 67
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.42 E-value=2.8e-12 Score=115.99 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=91.1
Q ss_pred HHHHHHHhhh-cCCCCCchHHHHHHHHHHCCCcEEEEcCC----ChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHH
Q 017995 57 EVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNS----HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPD 131 (362)
Q Consensus 57 ~~~~~~~~~~-~~~~~~pgv~~~L~~L~~~g~~~~i~S~~----~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~ 131 (362)
.+.+.|.... ....+.+++.++|+.|+++|++++++||. .+..++..+ +.+|+.++|+.++++++....||++.
T Consensus 100 ~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll-~~lGi~~~f~~i~~~d~~~~~Kp~~~ 178 (237)
T TIGR01672 100 VFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLA-KNFHIPAMNPVIFAGDKPGQYQYTKT 178 (237)
T ss_pred HHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHH-HHhCCchheeEEECCCCCCCCCCCHH
Confidence 4444555444 35677888999999999999999999998 667777776 88999999999999998888888876
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCC
Q 017995 132 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 132 ~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~ 174 (362)
. +++++++ |+||||+.+|+.+|+++|++++.|.++.
T Consensus 179 ~---~l~~~~i----~i~vGDs~~DI~aAk~AGi~~I~V~~g~ 214 (237)
T TIGR01672 179 Q---WIQDKNI----RIHYGDSDNDITAAKEAGARGIRILRAS 214 (237)
T ss_pred H---HHHhCCC----eEEEeCCHHHHHHHHHCCCCEEEEEecC
Confidence 3 4456665 8999999999999999999999998754
No 68
>PLN02954 phosphoserine phosphatase
Probab=99.41 E-value=6.7e-12 Score=113.07 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=114.4
Q ss_pred HHHHHHHHHcCCCCC-HHHHHhhcC--CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 017995 8 EVLKTFLVKYGKEWD-GREKHKIVG--KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSC 84 (362)
Q Consensus 8 ~a~~~~l~~~g~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~ 84 (362)
+.+..+++.+|.+.. .+....+.+ .+..+.+........ ...+.+ ...+.. ....++||+.++|+.|++
T Consensus 27 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~--~~~~l~pg~~e~l~~l~~ 98 (224)
T PLN02954 27 EGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFK--PSLSQV----EEFLEK--RPPRLSPGIPELVKKLRA 98 (224)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcC--CCHHHH----HHHHHH--ccCCCCccHHHHHHHHHH
Confidence 566888888987533 333455555 445554544333322 122222 222222 135789999999999999
Q ss_pred CCCcEEEEcCCChHhHHHHHHhhcCCc--CCCcEE--------EeCCC----CCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 017995 85 HGVPMALASNSHRATIESKISYQHGWN--ESFSVI--------VGSDE----VRTGKPSPDIFLEAAKRLNMEPSSSLVI 150 (362)
Q Consensus 85 ~g~~~~i~S~~~~~~i~~~L~~~~gl~--~~f~~i--------v~~~d----~~~gKp~p~~~~~~~~~~~~~p~~~l~i 150 (362)
+|++++|+|++.+..++..+ +.+|+. .+|... +.+.+ ...++++|+.+..++++++. ++|+||
T Consensus 99 ~g~~~~IvS~~~~~~i~~~l-~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~~~--~~~i~i 175 (224)
T PLN02954 99 RGTDVYLVSGGFRQMIAPVA-AILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKHGY--KTMVMI 175 (224)
T ss_pred CCCEEEEECCCcHHHHHHHH-HHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHcCC--CceEEE
Confidence 99999999999999999988 888986 355421 12221 12356788999999888875 689999
Q ss_pred ecCHhhHHHHHHcCCEEEEEcCCCCccc-cccchhHhhccccc
Q 017995 151 EDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSLLD 192 (362)
Q Consensus 151 gDs~~d~~aA~~aG~~~i~v~~~~~~~~-~~ssa~~vi~~l~e 192 (362)
||+.+|+.+|+++|+.+++...+..... ....++.++.++.+
T Consensus 176 GDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e 218 (224)
T PLN02954 176 GDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQD 218 (224)
T ss_pred eCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHH
Confidence 9999999999999988766543221111 11234556665554
No 69
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.37 E-value=1.3e-12 Score=107.53 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=79.0
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCC-ChHhHHHHHHhhcC-------CcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcC
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHG-------WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 141 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~-~~~~i~~~L~~~~g-------l~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~ 141 (362)
+++||+.++|+.|+++|++++++||+ ....+...+ +..+ +.++|+.++++++ +|+|+.|..+++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l-~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg 103 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELL-KIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLN 103 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHH-HhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhc
Confidence 68999999999999999999999999 888888777 7777 7899999988864 588999999999999
Q ss_pred --CCCCcEEEEecCHhhHHHHHH
Q 017995 142 --MEPSSSLVIEDSVIGVVAGKA 162 (362)
Q Consensus 142 --~~p~~~l~igDs~~d~~aA~~ 162 (362)
++|++|+||||+..++...++
T Consensus 104 ~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 104 GVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred CCCCcceEEEECCCHhHHHHHHh
Confidence 999999999999999876554
No 70
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.37 E-value=4.8e-12 Score=103.58 Aligned_cols=103 Identities=31% Similarity=0.466 Sum_probs=94.4
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCC----------------CCCH
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG----------------KPSP 130 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~g----------------Kp~p 130 (362)
....++|++.++|+.|+++|++++++|++...+++..+ +.+++..+|+.++++++.... ||++
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELL-EELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNP 99 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHH-HHcCCchhhhheeccchhhhhcccccccccccccccCCCCH
Confidence 45789999999999999999999999999999999888 888998888989887766544 9999
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEE
Q 017995 131 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 131 ~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v 170 (362)
..+..++++++.+++++++|||+.+|+.+|+++|+.+++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 100 DKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 9999999999999999999999999999999999998864
No 71
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.33 E-value=2.2e-11 Score=109.57 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=83.8
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC--CC--cEEEeCCCCCCCCCCHHH----------
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SF--SVIVGSDEVRTGKPSPDI---------- 132 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~--~f--~~iv~~~d~~~gKp~p~~---------- 132 (362)
...+++||+.++|+.|+++|++++|+|++...+++..| +++ +.. .+ +..+.+++....||+|..
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~ 148 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLL-QGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCC 148 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHH-HHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCc
Confidence 45789999999999999999999999999999999988 666 543 22 344566777777888764
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEE
Q 017995 133 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 168 (362)
Q Consensus 133 ~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i 168 (362)
...++++++..+.+|+||||+.+|+.+|+++|+.+.
T Consensus 149 K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a 184 (219)
T PRK09552 149 KPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA 184 (219)
T ss_pred hHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee
Confidence 357888999999999999999999999999999433
No 72
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.32 E-value=2.1e-11 Score=115.48 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=86.2
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCc-------EEEeCC---CCCCCCCCHHHHHHH
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-------VIVGSD---EVRTGKPSPDIFLEA 136 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~-------~iv~~~---d~~~gKp~p~~~~~~ 136 (362)
..++++||+.++|+.|++.|++++|+|++...+++..+ +++++...+. ..+++. +...+||+++.+..+
T Consensus 178 ~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~-~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~l 256 (322)
T PRK11133 178 ENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLR-DKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRL 256 (322)
T ss_pred HhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHH-HHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHH
Confidence 45789999999999999999999999999998888767 7888854332 112221 334578999999999
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 137 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 137 ~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
++++|+++++|++|||+.+|+.+++.+|+.+.+
T Consensus 257 a~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~ 289 (322)
T PRK11133 257 AQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY 289 (322)
T ss_pred HHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe
Confidence 999999999999999999999999999998876
No 73
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.31 E-value=6.7e-13 Score=123.81 Aligned_cols=105 Identities=24% Similarity=0.322 Sum_probs=84.3
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEE---eCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV---GSDEVRTGKPSPDIFLEAAKRLNMEPSSS 147 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv---~~~d~~~gKp~p~~~~~~~~~~~~~p~~~ 147 (362)
-++|+.++++.|+++|. +.|+||.+............++..+|+.+. +++....+||+|.+|..++++++++|++|
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 48899999999998887 899999887543211113446656666554 34555679999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCEEEEEcCCCCc
Q 017995 148 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQ 176 (362)
Q Consensus 148 l~igDs~-~d~~aA~~aG~~~i~v~~~~~~ 176 (362)
+||||+. +|+++|+++|+.++.|.++...
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V~~G~~~ 252 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLVLSGVSR 252 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEECCCCCC
Confidence 9999996 9999999999999999886543
No 74
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.31 E-value=3.7e-11 Score=108.66 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=86.1
Q ss_pred HHHHHHHhhh-cCCCCCchHHHHHHHHHHCCCcEEEEcCCC----hHhHHHHHHhhcCC--cCCCcEEEeCCCCCCCCCC
Q 017995 57 EVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSH----RATIESKISYQHGW--NESFSVIVGSDEVRTGKPS 129 (362)
Q Consensus 57 ~~~~~~~~~~-~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~----~~~i~~~L~~~~gl--~~~f~~iv~~~d~~~gKp~ 129 (362)
.+.+.|.+.. ....|+||+.++|+.|+++|++++++||.+ +..++.++ +.+|+ .++|+.++++++. .||+
T Consensus 100 ~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Ll-k~~gip~~~~f~vil~gd~~--~K~~ 176 (237)
T PRK11009 100 KFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLA-DDFHIPADNMNPVIFAGDKP--GQYT 176 (237)
T ss_pred HHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHH-HHcCCCcccceeEEEcCCCC--CCCC
Confidence 3344444443 468899999999999999999999999953 45555555 67899 8899988888864 6777
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCCC
Q 017995 130 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 175 (362)
Q Consensus 130 p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~~ 175 (362)
+.. +++++++ ++||||+..|+.+|+++|++++.|.++..
T Consensus 177 K~~---~l~~~~i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~ 215 (237)
T PRK11009 177 KTQ---WLKKKNI----RIFYGDSDNDITAAREAGARGIRILRAAN 215 (237)
T ss_pred HHH---HHHhcCC----eEEEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence 754 4455665 99999999999999999999999988643
No 75
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.30 E-value=1.8e-11 Score=102.02 Aligned_cols=101 Identities=24% Similarity=0.374 Sum_probs=90.0
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~ 146 (362)
.....-|.+.+.+..++++|+++.|+||+.+.-+.... .++|+ +.|. +.+||.+..|..|+++++++|++
T Consensus 43 d~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~-~~l~v----~fi~-----~A~KP~~~~fr~Al~~m~l~~~~ 112 (175)
T COG2179 43 DNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAA-EKLGV----PFIY-----RAKKPFGRAFRRALKEMNLPPEE 112 (175)
T ss_pred cCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhh-hhcCC----ceee-----cccCccHHHHHHHHHHcCCChhH
Confidence 45677889999999999999999999999999888877 88887 5553 46799999999999999999999
Q ss_pred EEEEecCH-hhHHHHHHcCCEEEEEcCCCCcc
Q 017995 147 SLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT 177 (362)
Q Consensus 147 ~l~igDs~-~d~~aA~~aG~~~i~v~~~~~~~ 177 (362)
|+||||.. +|+.+|+.+||.+|.|.+....+
T Consensus 113 vvmVGDqL~TDVlggnr~G~~tIlV~Pl~~~d 144 (175)
T COG2179 113 VVMVGDQLFTDVLGGNRAGMRTILVEPLVAPD 144 (175)
T ss_pred EEEEcchhhhhhhcccccCcEEEEEEEecccc
Confidence 99999999 99999999999999998854433
No 76
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.27 E-value=1.6e-12 Score=119.74 Aligned_cols=121 Identities=20% Similarity=0.221 Sum_probs=96.5
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC---CCCCCHHHHHHHHHHcCCCCCcE
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNMEPSSS 147 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~---~gKp~p~~~~~~~~~~~~~p~~~ 147 (362)
.++++.++++.|++.++++.++||.+..+....+ ..+|+..+|+.+.++.... .+||+|++|..++++++++|++|
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 199 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDG-LALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEA 199 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCC-CCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhE
Confidence 4679999999999999999999999988776555 6678888888776654433 48999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCEEEEEcCCCCccc---c-ccchhHhhccccc
Q 017995 148 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTH---R-YTAADEVINSLLD 192 (362)
Q Consensus 148 l~igDs~-~d~~aA~~aG~~~i~v~~~~~~~~---~-~ssa~~vi~~l~e 192 (362)
+||||+. +|+.+|+++|+.+++|.++..... . ...++.+++++.+
T Consensus 200 ~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~e 249 (257)
T TIGR01458 200 VMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPH 249 (257)
T ss_pred EEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHH
Confidence 9999996 999999999999999987632111 1 1234556665554
No 77
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.24 E-value=2.3e-10 Score=99.84 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=81.7
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCC--------------------CCCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE--------------------VRTG 126 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d--------------------~~~g 126 (362)
...+++||+.++|+.|+++|++++|+|++....++..+ +++++.++|+.|++++. ...+
T Consensus 69 ~~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 147 (188)
T TIGR01489 69 KSAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVL-EGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCG 147 (188)
T ss_pred HhCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCC
Confidence 34799999999999999999999999999999999888 88999999999987543 2234
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEE
Q 017995 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 127 Kp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~ 167 (362)
.++++.+..+.+.. +++|++|||+.+|+.+|+++++-+
T Consensus 148 ~~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 148 CCKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CCHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCccc
Confidence 45577888776654 899999999999999999986543
No 78
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.23 E-value=1.5e-11 Score=91.33 Aligned_cols=68 Identities=32% Similarity=0.510 Sum_probs=57.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCEEEEEcCCCCccccc----cchhHhhccccc
Q 017995 125 TGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQTHRY----TAADEVINSLLD 192 (362)
Q Consensus 125 ~gKp~p~~~~~~~~~~~~~p~~~l~igDs-~~d~~aA~~aG~~~i~v~~~~~~~~~~----ssa~~vi~~l~e 192 (362)
++||+|.+|..++++++++|++|+||||+ .+|+.+|+++|+.++.|.++....+.. ..++.++.+|.|
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e 74 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKE 74 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGG
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHh
Confidence 68999999999999999999999999999 799999999999999999965443321 356677777655
No 79
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.22 E-value=2.3e-10 Score=102.55 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=81.3
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCC---cEEEeCCCCCCCCCCHHHH----------H
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF---SVIVGSDEVRTGKPSPDIF----------L 134 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f---~~iv~~~d~~~gKp~p~~~----------~ 134 (362)
..+++||+.++|+.|+++|++++|+|++...+++.++ +.++....+ +.++.++.+...||+|..+ .
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~ 146 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLL-EGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKP 146 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHH
Confidence 4789999999999999999999999999999999888 665444444 3455566667778887765 4
Q ss_pred HHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 017995 135 EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 165 (362)
Q Consensus 135 ~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~ 165 (362)
.++++++..+++|+||||+.+|+.+|+.+|+
T Consensus 147 ~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~ 177 (214)
T TIGR03333 147 SLIRKLSEPNDYHIVIGDSVTDVEAAKQSDL 177 (214)
T ss_pred HHHHHHhhcCCcEEEEeCCHHHHHHHHhCCe
Confidence 6777788889999999999999999999998
No 80
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.22 E-value=9.7e-12 Score=113.61 Aligned_cols=98 Identities=23% Similarity=0.384 Sum_probs=84.5
Q ss_pred CchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEE--EeCCCCCCCCCCHHHHHHHHHHcCCC-CCcEE
Q 017995 72 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI--VGSDEVRTGKPSPDIFLEAAKRLNME-PSSSL 148 (362)
Q Consensus 72 ~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~i--v~~~d~~~gKp~p~~~~~~~~~~~~~-p~~~l 148 (362)
+|++.++++.|.++|+++ |+||.+..+....+ ..++...+|..+ ++++....+||+|.+|..++++++.. +++|+
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~-~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~ 217 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGI-YRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML 217 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCc-eEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence 689999999999999997 88999988876555 667777777755 66766678999999999999999975 67999
Q ss_pred EEecC-HhhHHHHHHcCCEEEEEc
Q 017995 149 VIEDS-VIGVVAGKAAGMEVVAVP 171 (362)
Q Consensus 149 ~igDs-~~d~~aA~~aG~~~i~v~ 171 (362)
||||+ .+|+.+|+++|+.+++|.
T Consensus 218 ~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 218 MVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred EECCCcHHHHHHHHHCCCeEEEEe
Confidence 99999 599999999999999885
No 81
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.18 E-value=5.7e-11 Score=102.14 Aligned_cols=85 Identities=12% Similarity=0.198 Sum_probs=76.9
Q ss_pred HHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 017995 78 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 157 (362)
Q Consensus 78 ~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~ 157 (362)
.+..|+++|++++|+|+++...++..+ +.+++..+|+.+ ||+|+.+..+++++++++++|++|||+.+|+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l-~~lgi~~~f~~~---------kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi 111 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRA-EELKIKRFHEGI---------KKKTEPYAQMLEEMNISDAEVCYVGDDLVDL 111 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHH-HHCCCcEEEecC---------CCCHHHHHHHHHHcCcCHHHEEEECCCHHHH
Confidence 468888999999999999999999988 899998777632 7999999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEcC
Q 017995 158 VAGKAAGMEVVAVPS 172 (362)
Q Consensus 158 ~aA~~aG~~~i~v~~ 172 (362)
.+++.+|+.++.-..
T Consensus 112 ~~~~~ag~~~am~nA 126 (169)
T TIGR02726 112 SMMKRVGLAVAVGDA 126 (169)
T ss_pred HHHHHCCCeEECcCc
Confidence 999999999876543
No 82
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.18 E-value=6.1e-10 Score=96.72 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=113.9
Q ss_pred HHHHHH-HHcCCCCCHH-----HHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh--cCCCCCchHHHHHH
Q 017995 9 VLKTFL-VKYGKEWDGR-----EKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL--CKVKALPGANRLIK 80 (362)
Q Consensus 9 a~~~~l-~~~g~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pgv~~~L~ 80 (362)
.+.+.+ .++|++.+.. .+.+.+|.++... . ..+...+.++..+ ...... +.++|-+-.+.+|-
T Consensus 40 nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL----~-~~~~~~d~deY~~----~V~~~LPlq~LkPD~~LRnlLL 110 (244)
T KOG3109|consen 40 NIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGL----K-AVGYIFDADEYHR----FVHGRLPLQDLKPDPVLRNLLL 110 (244)
T ss_pred HHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHH----H-HhcccCCHHHHHH----HhhccCcHhhcCCCHHHHHHHH
Confidence 334444 4578755322 2344555444322 2 2233334444433 333332 45888999999999
Q ss_pred HHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC------CCCCCHHHHHHHHHHcCCC-CCcEEEEecC
Q 017995 81 HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR------TGKPSPDIFLEAAKRLNME-PSSSLVIEDS 153 (362)
Q Consensus 81 ~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~------~gKp~p~~~~~~~~~~~~~-p~~~l~igDs 153 (362)
.|+.++ ..+-||+.+..+.+.| +++|+.+.|+.|++.+-.. ..||+++.|..+++..|++ |.+|+++.||
T Consensus 111 ~l~~r~--k~~FTNa~k~HA~r~L-k~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS 187 (244)
T KOG3109|consen 111 SLKKRR--KWIFTNAYKVHAIRIL-KKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDS 187 (244)
T ss_pred hCcccc--EEEecCCcHHHHHHHH-HHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCCcCceEEEcCc
Confidence 999874 7889999999999999 9999999999999876444 4699999999999999998 9999999999
Q ss_pred HhhHHHHHHcCCEEEEEcC
Q 017995 154 VIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 154 ~~d~~aA~~aG~~~i~v~~ 172 (362)
...+++|++.|+.++++..
T Consensus 188 ~~NI~~ak~vGl~tvlv~~ 206 (244)
T KOG3109|consen 188 ERNIQTAKEVGLKTVLVGR 206 (244)
T ss_pred hhhHHHHHhccceeEEEEe
Confidence 9999999999999998865
No 83
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.15 E-value=6.9e-10 Score=98.23 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcE-EEeCCC------
Q 017995 50 AKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV-IVGSDE------ 122 (362)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~-iv~~~d------ 122 (362)
+.+++.....+.+.... ...++||+.++|+.++++|++++|+|++++..++..+ +++|+..+|.. +...++
T Consensus 68 ~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~-~~lg~~~~~~~~l~~~~~g~~~g~ 145 (202)
T TIGR01490 68 LEEDVRAIVEEFVNQKI-ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLA-RILGIDNAIGTRLEESEDGIYTGN 145 (202)
T ss_pred CHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHcCCcceEecceEEcCCCEEeCC
Confidence 45566555555554433 3578999999999999999999999999999999888 88899877654 332121
Q ss_pred ----CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 123 ----VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 123 ----~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
...+++++..+...+++.++++++|+++|||.+|+.+++.+|..+++.+.
T Consensus 146 ~~~~~~~g~~K~~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~ 199 (202)
T TIGR01490 146 IDGNNCKGEGKVHALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPD 199 (202)
T ss_pred ccCCCCCChHHHHHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCC
Confidence 12456667778888999999999999999999999999999998876543
No 84
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.13 E-value=3.4e-10 Score=100.48 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=79.5
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCC-CC---CCCCCCHHHHHHHHHHcCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-EV---RTGKPSPDIFLEAAKRLNM 142 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~-d~---~~gKp~p~~~~~~~~~~~~ 142 (362)
..++++||+.++|+.|+++ ++++|+|++...+++..+ +++|+..+|...+..+ +. +..++.|.....++++++.
T Consensus 65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~ 142 (205)
T PRK13582 65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLM-RQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKS 142 (205)
T ss_pred HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHH-HHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHH
Confidence 5678999999999999999 999999999999999988 8899988886544332 11 1122334445666667777
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCEEE
Q 017995 143 EPSSSLVIEDSVIGVVAGKAAGMEVV 168 (362)
Q Consensus 143 ~p~~~l~igDs~~d~~aA~~aG~~~i 168 (362)
.+.+|+||||+.+|+.+|+.+|+.+.
T Consensus 143 ~~~~~v~iGDs~~D~~~~~aa~~~v~ 168 (205)
T PRK13582 143 LGYRVIAAGDSYNDTTMLGEADAGIL 168 (205)
T ss_pred hCCeEEEEeCCHHHHHHHHhCCCCEE
Confidence 78999999999999999999998664
No 85
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.12 E-value=1.7e-10 Score=102.64 Aligned_cols=91 Identities=31% Similarity=0.436 Sum_probs=80.7
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 147 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~ 147 (362)
..+++||+.++|+.|+++|++++++|+.....+.... +.+|+. +.++.+... +||++.+|..+++.++.++.+|
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~-~~lgi~---~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v 198 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIA-KQLGIF---DSIVFARVI--GKPEPKIFLRIIKELQVKPGEV 198 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHH-HHTTSC---SEEEEESHE--TTTHHHHHHHHHHHHTCTGGGE
T ss_pred cCcchhhhhhhhhhhhccCcceeeeeccccccccccc-cccccc---ccccccccc--ccccchhHHHHHHHHhcCCCEE
Confidence 3578999999999999999999999999999988887 888983 444444433 8999999999999999999999
Q ss_pred EEEecCHhhHHHHHHcC
Q 017995 148 LVIEDSVIGVVAGKAAG 164 (362)
Q Consensus 148 l~igDs~~d~~aA~~aG 164 (362)
+||||+.+|+.++++||
T Consensus 199 ~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 199 AMVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEEESSGGHHHHHHHSS
T ss_pred EEEccCHHHHHHHHhCc
Confidence 99999999999999987
No 86
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.12 E-value=2e-10 Score=97.61 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=75.1
Q ss_pred HHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 017995 78 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 157 (362)
Q Consensus 78 ~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~ 157 (362)
+|+.|+++|++++|+||.+...+...+ +++|+..+|+. .+|+|+.+..+++++++++++|+||||+.+|+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l-~~~gi~~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~ 105 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRC-KTLGITHLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLIDW 105 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHH-HHcCCCEEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 799999999999999999999998888 88998766542 37889999999999999999999999999999
Q ss_pred HHHHHcCCEEEEEcC
Q 017995 158 VAGKAAGMEVVAVPS 172 (362)
Q Consensus 158 ~aA~~aG~~~i~v~~ 172 (362)
.+++.+|+. +.+..
T Consensus 106 ~~~~~ag~~-~~v~~ 119 (154)
T TIGR01670 106 PVMEKVGLS-VAVAD 119 (154)
T ss_pred HHHHHCCCe-EecCC
Confidence 999999998 55544
No 87
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.11 E-value=2.7e-10 Score=108.32 Aligned_cols=91 Identities=22% Similarity=0.148 Sum_probs=84.1
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhh----cCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ----HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 145 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~----~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~ 145 (362)
.++||+.++|+.|+++|++++|+|++++..+...| ++ +++.++|+.+.++ .||+|+.+..+++++++.++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l-~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~ 104 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVF-ERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTD 104 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcC
Confidence 46899999999999999999999999999999989 77 8888899988665 48999999999999999999
Q ss_pred cEEEEecCHhhHHHHHHcCCE
Q 017995 146 SSLVIEDSVIGVVAGKAAGME 166 (362)
Q Consensus 146 ~~l~igDs~~d~~aA~~aG~~ 166 (362)
+|+||||++.|+.++++++..
T Consensus 105 ~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 105 SFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred cEEEECCCHHHHHHHHHHCCC
Confidence 999999999999999998765
No 88
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.10 E-value=2.4e-09 Score=101.54 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=86.1
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhc-C-------CcCCCcEEEeCCCCC----CC---------
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH-G-------WNESFSVIVGSDEVR----TG--------- 126 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~-g-------l~~~f~~iv~~~d~~----~g--------- 126 (362)
.+.+.||+.++|+.|+++|++++|+||++..+++..+ +.+ | +.++||.|+++..-. .+
T Consensus 182 yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im-~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGM-KYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred HhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCC
Confidence 3677999999999999999999999999999999888 664 6 899999999875311 00
Q ss_pred ----CCCH------------HHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCEEEEEcC
Q 017995 127 ----KPSP------------DIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS 172 (362)
Q Consensus 127 ----Kp~p------------~~~~~~~~~~~~~p~~~l~igDs~-~d~~aA~-~aG~~~i~v~~ 172 (362)
++.. +......+.+++++++|+||||.. .|+.+|+ .+|++++.|.+
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 1111 235566778899999999999999 8999998 99999998876
No 89
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.09 E-value=7.7e-10 Score=101.75 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=83.6
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEE------EeCCCCCCCCCCH---------HH
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI------VGSDEVRTGKPSP---------DI 132 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~i------v~~~d~~~gKp~p---------~~ 132 (362)
.+++.||+.++++.|+++|++++|+|++....++..| +++|+.+.+..| +..+.+-.|+|.| ..
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL-~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v 197 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVL-RQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDV 197 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH-HHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHH
Confidence 6899999999999999999999999999999999999 888987777777 5556666788888 77
Q ss_pred HHHHHHHcC--CCCCcEEEEecCHhhHHHHHHc
Q 017995 133 FLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAA 163 (362)
Q Consensus 133 ~~~~~~~~~--~~p~~~l~igDs~~d~~aA~~a 163 (362)
++.+.+.++ .++++|++|||+.+|+.+|...
T Consensus 198 ~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 198 ALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred HHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 777888888 8999999999999999997655
No 90
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.06 E-value=5.3e-10 Score=111.77 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=80.6
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCCh------------HhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHH
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHR------------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 138 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~------------~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~ 138 (362)
++|||.+.|+.|++.||+++|+||.+. ..+..++ +.+|+. |+.+++.++..+.||+|+++..+++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL-~~lgip--fdviia~~~~~~RKP~pGm~~~a~~ 274 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIV-AKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKE 274 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHH-HHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence 689999999999999999999999877 3466666 778874 8888888888889999999999999
Q ss_pred HcC----CCCCcEEEEecCHhhHHHHHHcCC
Q 017995 139 RLN----MEPSSSLVIEDSVIGVVAGKAAGM 165 (362)
Q Consensus 139 ~~~----~~p~~~l~igDs~~d~~aA~~aG~ 165 (362)
+++ +++++|+||||+..|+.+|+.+|-
T Consensus 275 ~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 275 EANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred hcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 985 899999999999999887776654
No 91
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.02 E-value=2.5e-09 Score=92.06 Aligned_cols=105 Identities=23% Similarity=0.323 Sum_probs=84.7
Q ss_pred hcCCCCCchHHHHHHHHHHCCCcEEEEcCCC---------------hHhHHHHHHhhcCCcCCCcEEEeCC-----CCCC
Q 017995 66 LCKVKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIVGSD-----EVRT 125 (362)
Q Consensus 66 ~~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~---------------~~~i~~~L~~~~gl~~~f~~iv~~~-----d~~~ 125 (362)
.....+.||+.+.|..|++.||++.++||.+ ...+...| +..|. .|+.|..+. .+.+
T Consensus 27 ~~~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l-~~~gv--~id~i~~Cph~p~~~c~c 103 (181)
T COG0241 27 LDDFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKIL-ASQGV--KIDGILYCPHHPEDNCDC 103 (181)
T ss_pred HHHhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcc
Confidence 3467899999999999999999999999942 12233333 33343 567776653 3668
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCC
Q 017995 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 126 gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~ 173 (362)
.||.|.++..+++++++++++.+||||..+|+++|.++|++.+.+..+
T Consensus 104 RKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~ 151 (181)
T COG0241 104 RKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTG 151 (181)
T ss_pred cCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcC
Confidence 899999999999999999999999999999999999999997666553
No 92
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.01 E-value=2.2e-08 Score=88.92 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=80.0
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcE--------EEeCCCCCCCCCCHHHHHHHHH
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV--------IVGSDEVRTGKPSPDIFLEAAK 138 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~--------iv~~~d~~~gKp~p~~~~~~~~ 138 (362)
..++++||+.++|+.|++.+ +++|+|++...+++.++ +.+|+..+|.. .+++... ..++++......++
T Consensus 65 ~~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il-~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~l~ 141 (203)
T TIGR02137 65 ATLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLM-RQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIAFK 141 (203)
T ss_pred HhCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHH-HHcCCchhhceeeEEecCCeeECeee-cCcchHHHHHHHHH
Confidence 45689999999999999975 99999999999999888 89999887762 2223222 23566666666666
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 139 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 139 ~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
+.+ .+|++|||+.+|+.+++.+|+.+.....
T Consensus 142 ~~~---~~~v~vGDs~nDl~ml~~Ag~~ia~~ak 172 (203)
T TIGR02137 142 SLY---YRVIAAGDSYNDTTMLSEAHAGILFHAP 172 (203)
T ss_pred hhC---CCEEEEeCCHHHHHHHHhCCCCEEecCC
Confidence 655 3899999999999999999999988765
No 93
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.00 E-value=1.7e-09 Score=94.23 Aligned_cols=113 Identities=26% Similarity=0.337 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHCCCcEEEE--------cCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCC---CHHHHHHHHHHcCC
Q 017995 74 GANRLIKHLSCHGVPMALA--------SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP---SPDIFLEAAKRLNM 142 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~--------S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp---~p~~~~~~~~~~~~ 142 (362)
...+=++.|++.|+...++ ..++++|++.++ ...+. +.+++|+|+++|+. +.+.+...
T Consensus 57 ~~e~R~~~l~~l~vd~v~~~~f~~~~~~~s~~~Fi~~il-~~~~~----~~ivvG~Df~FG~~~~g~~~~L~~~------ 125 (180)
T cd02064 57 TLEEKLELLESLGVDYLLVLPFDKEFASLSAEEFVEDLL-VKLNA----KHVVVGFDFRFGKGRSGDAELLKEL------ 125 (180)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCHHHHcCCHHHHHHHHH-hhcCC----eEEEEccCCCCCCCCCCCHHHHHHh------
Confidence 4456667788888877664 246788888777 33243 89999999999865 44444332
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCEEEEEcCCCCccccccchhHhhcccccccccccCCCCCCccccCCCCCCceeEeeee
Q 017995 143 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPV 222 (362)
Q Consensus 143 ~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~el~~~~~~l~~~~~~~a~~lLgrp~~i~g~v 222 (362)
+.+.|+.++.++....++..+|| +.+++.+.++++.. |+.||||||+++|+|
T Consensus 126 -----------------~~~~g~~v~~v~~~~~~~~~iSS-T~IR~~i~~G~i~~----------an~lLg~~y~~~g~V 177 (180)
T cd02064 126 -----------------GKKYGFEVTVVPPVTLDGERVSS-TRIREALAEGDVEL----------ANELLGRPYSIEGRV 177 (180)
T ss_pred -----------------hhhcCcEEEEeCcEecCCcEEcH-HHHHHHHHhCCHHH----------HHHHcCCCcEEEEEE
Confidence 56789999999886555555653 66666666787774 999999999999999
Q ss_pred eec
Q 017995 223 VKG 225 (362)
Q Consensus 223 ~~G 225 (362)
+||
T Consensus 178 ~~G 180 (180)
T cd02064 178 VHG 180 (180)
T ss_pred eeC
Confidence 998
No 94
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.95 E-value=2.6e-09 Score=93.32 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=72.3
Q ss_pred HHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhh
Q 017995 77 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG 156 (362)
Q Consensus 77 ~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d 156 (362)
..++.|+++|++++|+|+.+...+...+ +.+|+..+|+ + .++.++.+..+++++|++|++|+||||+.+|
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l-~~lgl~~~f~----g-----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D 124 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRM-TTLGITHLYQ----G-----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLID 124 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHH-HHcCCceeec----C-----CCcHHHHHHHHHHHhCCCHHHEEEECCCHHH
Confidence 4678888999999999999999999888 8889866654 2 3566899999999999999999999999999
Q ss_pred HHHHHHcCCEEE
Q 017995 157 VVAGKAAGMEVV 168 (362)
Q Consensus 157 ~~aA~~aG~~~i 168 (362)
+.+|+++|+.++
T Consensus 125 ~~~a~~aG~~~~ 136 (183)
T PRK09484 125 WPVMEKVGLSVA 136 (183)
T ss_pred HHHHHHCCCeEe
Confidence 999999999954
No 95
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.91 E-value=7.1e-09 Score=89.56 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=78.0
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCC------------CCCCCCCHHHHH
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE------------VRTGKPSPDIFL 134 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d------------~~~gKp~p~~~~ 134 (362)
+.++++||+.++|+.|+++|++++|+|++...+++..+ +.+|+...|...+..++ ...+..++..+.
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~-~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~ 148 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVA-EKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK 148 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence 45678999999999999999999999999999999888 88898776654433321 122344567888
Q ss_pred HHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 017995 135 EAAKRLNMEPSSSLVIEDSVIGVVAGKAA 163 (362)
Q Consensus 135 ~~~~~~~~~p~~~l~igDs~~d~~aA~~a 163 (362)
..+++.++++++|++|||+.+|+.+++.+
T Consensus 149 ~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 149 ELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 88888899999999999999999998753
No 96
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.89 E-value=6.4e-10 Score=102.02 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=76.4
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHH--HHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIES--KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 147 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~--~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~ 147 (362)
..++.+...+..|+ +|.+ .++||.+..+... .+...-.+...++.+.+.+.+..+||+|++|..+++++++++++|
T Consensus 121 ~~y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~ 198 (249)
T TIGR01457 121 IDYEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLGTEREET 198 (249)
T ss_pred CCHHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcCCCcccE
Confidence 34556666777774 5776 7778876554321 110111122234556666777789999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCEEEEEcCCCC
Q 017995 148 LVIEDSV-IGVVAGKAAGMEVVAVPSLPK 175 (362)
Q Consensus 148 l~igDs~-~d~~aA~~aG~~~i~v~~~~~ 175 (362)
+||||+. +|+.+|+++|+++++|.++..
T Consensus 199 ~~VGD~~~~Di~~a~~~G~~~v~v~~G~~ 227 (249)
T TIGR01457 199 LMVGDNYLTDIRAGIDAGIDTLLVHTGVT 227 (249)
T ss_pred EEECCCchhhHHHHHHcCCcEEEEcCCCC
Confidence 9999997 899999999999999988643
No 97
>PLN02645 phosphoglycolate phosphatase
Probab=98.89 E-value=5.1e-10 Score=106.02 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=83.3
Q ss_pred HHHHHHHHH-CCCcEEEEcCCChHh-HHHHHHhhcCCcCCCcEEEeCCCCC---CCCCCHHHHHHHHHHcCCCCCcEEEE
Q 017995 76 NRLIKHLSC-HGVPMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEVR---TGKPSPDIFLEAAKRLNMEPSSSLVI 150 (362)
Q Consensus 76 ~~~L~~L~~-~g~~~~i~S~~~~~~-i~~~L~~~~gl~~~f~~iv~~~d~~---~gKp~p~~~~~~~~~~~~~p~~~l~i 150 (362)
......|++ .| .+.|+||.+..+ ....+ ...|+..+|+.+.++.... .|||+|.+|..+++++++++++|+||
T Consensus 176 ~~a~~~l~~~~g-~~~i~tn~d~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~V 253 (311)
T PLN02645 176 QYATLCIRENPG-CLFIATNRDAVTHLTDAQ-EWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMV 253 (311)
T ss_pred HHHHHHHhcCCC-CEEEEeCCCCCCCCCCCC-CccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEE
Confidence 334455554 34 588999988754 22333 4457777778776655433 47999999999999999999999999
Q ss_pred ecCH-hhHHHHHHcCCEEEEEcCCCCccccc------cchhHhhccccc
Q 017995 151 EDSV-IGVVAGKAAGMEVVAVPSLPKQTHRY------TAADEVINSLLD 192 (362)
Q Consensus 151 gDs~-~d~~aA~~aG~~~i~v~~~~~~~~~~------ssa~~vi~~l~e 192 (362)
||+. +|+.+|+++|+++++|.++....+.. ..++.+++++.+
T Consensus 254 GD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~ 302 (311)
T PLN02645 254 GDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISD 302 (311)
T ss_pred cCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHH
Confidence 9997 99999999999999998865432221 124555555554
No 98
>PTZ00445 p36-lilke protein; Provisional
Probab=98.83 E-value=3.8e-08 Score=86.03 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=83.7
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChH---------------hHHHHHHhhcCCcCCCcEEEeCCCC-----------C
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRA---------------TIESKISYQHGWNESFSVIVGSDEV-----------R 124 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~---------------~i~~~L~~~~gl~~~f~~iv~~~d~-----------~ 124 (362)
+.|....++..|++.|++++|+|-+++. +++..| +.-+..-..+.+++...- +
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~l-k~s~~~~~i~~~~~yyp~~w~~p~~y~~~g 154 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAAL-KKSKCDFKIKKVYAYYPKFWQEPSDYRPLG 154 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHH-HhcCccceeeeeeeeCCcccCChhhhhhhc
Confidence 6789999999999999999999988774 466666 544444444556654322 3
Q ss_pred CCCCCHHH--H--HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 125 TGKPSPDI--F--LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 125 ~gKp~p~~--~--~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
..||+|++ | +.++++.|++|++|++|.|+...+++|++.|+.++.+..
T Consensus 155 l~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 155 LDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred ccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCC
Confidence 55999999 9 999999999999999999999999999999999999865
No 99
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.82 E-value=2.1e-09 Score=92.00 Aligned_cols=99 Identities=8% Similarity=0.054 Sum_probs=87.6
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC-CCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~-~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~ 146 (362)
.+...||+.++|+.|.+. +.++|.|++.+.+++.++ +.++... +|+.+++.+++...+|. +...+..+|.++++
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il-~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~ 114 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVL-DILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSK 114 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHH-HHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhh
Confidence 367899999999999987 999999999999999988 8888775 89999999988877776 67778889999999
Q ss_pred EEEEecCHhhHHHHHHcCCEEEEEc
Q 017995 147 SLVIEDSVIGVVAGKAAGMEVVAVP 171 (362)
Q Consensus 147 ~l~igDs~~d~~aA~~aG~~~i~v~ 171 (362)
||+|||++.++.++.++|+.+....
T Consensus 115 vIiVDD~~~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 115 VIIIDNSPYSYSLQPDNAIPIKSWF 139 (162)
T ss_pred EEEEeCChhhhccCccCEeecCCCC
Confidence 9999999999999999998865543
No 100
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.80 E-value=5.4e-08 Score=89.35 Aligned_cols=70 Identities=29% Similarity=0.484 Sum_probs=57.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCEEEEEcCCCCccccc----cchhHhhcccccc
Q 017995 124 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRY----TAADEVINSLLDL 193 (362)
Q Consensus 124 ~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~-~d~~aA~~aG~~~i~v~~~~~~~~~~----ssa~~vi~~l~el 193 (362)
..|||++.+|..++++++.++++|+||||+. +|+.+|.++||.++.|.++-...+.. ..+++++.++.++
T Consensus 187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~ 261 (269)
T COG0647 187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAEL 261 (269)
T ss_pred ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHH
Confidence 3579999999999999999999999999999 99999999999999999875433221 2346666666664
No 101
>PRK08238 hypothetical protein; Validated
Probab=98.68 E-value=1.8e-07 Score=93.28 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=80.3
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 147 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~ 147 (362)
..++.||+.++|+.++++|++++++|++++..++..+ +++|+ |+.++++++....||++... ...+.++ .+++
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~-~~lGl---Fd~Vigsd~~~~~kg~~K~~-~l~~~l~--~~~~ 142 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVA-AHLGL---FDGVFASDGTTNLKGAAKAA-ALVEAFG--ERGF 142 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCC---CCEEEeCCCccccCCchHHH-HHHHHhC--ccCe
Confidence 4667899999999999999999999999999999888 88887 89999999887777765432 2334454 3669
Q ss_pred EEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 148 LVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 148 l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
+++||+.+|+.+++.+| +.+.|.+
T Consensus 143 ~yvGDS~~Dlp~~~~A~-~av~Vn~ 166 (479)
T PRK08238 143 DYAGNSAADLPVWAAAR-RAIVVGA 166 (479)
T ss_pred eEecCCHHHHHHHHhCC-CeEEECC
Confidence 99999999999999999 5556655
No 102
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.68 E-value=4e-08 Score=89.70 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=78.0
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHH--HHHHhhcCCcC-CCcEEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 143 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~--~~L~~~~gl~~-~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~ 143 (362)
....++||+.++|+.|+++|++++|+||+++.... ..| +++|+.. +|+.|+++.+... +.+..++++++.+
T Consensus 21 ~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L-~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~ 94 (242)
T TIGR01459 21 DGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTL-KSLGINADLPEMIISSGEIAV-----QMILESKKRFDIR 94 (242)
T ss_pred cCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHH-HHCCCCccccceEEccHHHHH-----HHHHhhhhhccCC
Confidence 45678999999999999999999999999988765 567 8899987 8999999876643 4677777888999
Q ss_pred CCcEEEEecCHhhHHHHHHcCC
Q 017995 144 PSSSLVIEDSVIGVVAGKAAGM 165 (362)
Q Consensus 144 p~~~l~igDs~~d~~aA~~aG~ 165 (362)
|.+|++|||+..|++.....|.
T Consensus 95 ~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 95 NGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred CceEEEeCCcccchhhhcCCCc
Confidence 9999999999988887655443
No 103
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.66 E-value=8.3e-07 Score=79.29 Aligned_cols=103 Identities=19% Similarity=0.277 Sum_probs=87.5
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCC---CC-------CCCCCHHHHHHHHH
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE---VR-------TGKPSPDIFLEAAK 138 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d---~~-------~gKp~p~~~~~~~~ 138 (362)
.+++||+.++++.++++|++++|+|+++..+++.+. +.+|++..+-.....+| .+ .++.+...+...++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia-~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~ 154 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIA-ERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA 154 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHH-HHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence 799999999999999999999999999999988877 89999877665555554 11 22446678889999
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 139 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 139 ~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
++|+++++++++|||.+|+-.-..+|..++.-+.
T Consensus 155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~ 188 (212)
T COG0560 155 ELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPK 188 (212)
T ss_pred HcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcC
Confidence 9999999999999999999999999999876544
No 104
>PRK10444 UMP phosphatase; Provisional
Probab=98.62 E-value=2e-08 Score=92.04 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=60.2
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCEEEEEcCCCCccccc----cchhHhhcccc
Q 017995 117 IVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRY----TAADEVINSLL 191 (362)
Q Consensus 117 iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~-~d~~aA~~aG~~~i~v~~~~~~~~~~----ssa~~vi~~l~ 191 (362)
+.+.+....|||+|++|..++++++++|++|+||||+. +|+.+|+++|+.+++|.++....+.. ..++.+++++.
T Consensus 164 ~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~ 243 (248)
T PRK10444 164 ISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVA 243 (248)
T ss_pred HhCCCccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHH
Confidence 44445555789999999999999999999999999997 89999999999999998865433221 13455555555
Q ss_pred cc
Q 017995 192 DL 193 (362)
Q Consensus 192 el 193 (362)
++
T Consensus 244 el 245 (248)
T PRK10444 244 DI 245 (248)
T ss_pred Hh
Confidence 43
No 105
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.58 E-value=4.3e-07 Score=77.81 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=73.1
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCC-hHhHHHHHHhhcCCc----------CCCcEEEeCCCCCCCCCCHHHHHH
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSH-RATIESKISYQHGWN----------ESFSVIVGSDEVRTGKPSPDIFLE 135 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~-~~~i~~~L~~~~gl~----------~~f~~iv~~~d~~~gKp~p~~~~~ 135 (362)
..+.++|+|.+.|+.|+++|++++++|.++ .+.++..| +.+++. ++|+..-... + .....|..
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L-~~l~i~~~~~~~~~~~~~F~~~eI~~----g-sK~~Hf~~ 115 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELL-KLLEIDDADGDGVPLIEYFDYLEIYP----G-SKTTHFRR 115 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHH-HHTT-C----------CCECEEEESS----S--HHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHH-HhcCCCccccccccchhhcchhheec----C-chHHHHHH
Confidence 468999999999999999999999999654 45777777 889998 7777654433 2 45788999
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCCC
Q 017995 136 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 175 (362)
Q Consensus 136 ~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~~ 175 (362)
+.++.|++.++++++.|-...++...+.|+.++.|+.+..
T Consensus 116 i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt 155 (169)
T PF12689_consen 116 IHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLT 155 (169)
T ss_dssp HHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--
T ss_pred HHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCC
Confidence 9999999999999999999999999999999999988543
No 106
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.53 E-value=2.1e-07 Score=95.09 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=71.0
Q ss_pred CCCCCchHHHHHHHHHHCC-CcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 017995 68 KVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g-~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~ 146 (362)
+.+++||+.++|+.|+++| ++++++|+.+...++..+ +++|+.++|..+ .|+.=...+++++..+.+
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~-~~lgi~~~f~~~-----------~p~~K~~~v~~l~~~~~~ 449 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVA-AELGIDEVHAEL-----------LPEDKLAIVKELQEEGGV 449 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHH-HHhCCCeeeccC-----------CHHHHHHHHHHHHHcCCE
Confidence 3679999999999999999 999999999999999888 899997666533 112222344555557789
Q ss_pred EEEEecCHhhHHHHHHcCCEE
Q 017995 147 SLVIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 147 ~l~igDs~~d~~aA~~aG~~~ 167 (362)
|+||||+.+|+.+++++|+.+
T Consensus 450 v~~vGDg~nD~~al~~A~vgi 470 (556)
T TIGR01525 450 VAMVGDGINDAPALAAADVGI 470 (556)
T ss_pred EEEEECChhHHHHHhhCCEeE
Confidence 999999999999999999543
No 107
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=98.46 E-value=8.6e-06 Score=69.08 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=82.8
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHH--HhhcCCcCCCcEEEeCCCCCCC-CCCHHHHHHHHHHcCCCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI--SYQHGWNESFSVIVGSDEVRTG-KPSPDIFLEAAKRLNMEP 144 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L--~~~~gl~~~f~~iv~~~d~~~g-Kp~p~~~~~~~~~~~~~p 144 (362)
+..++|++.+.|+..++.|+++.|.|+.+.....-++ ....+|..+|+.- .|...| |-....|..++...|++|
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGy---fDttiG~KrE~~SY~kIa~~iGl~p 177 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGY---FDTTIGKKRESQSYAKIAGDIGLPP 177 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcce---eeccccccccchhHHHHHHhcCCCc
Confidence 5889999999999999999999999999888655444 1223444444432 334443 667889999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 145 SSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 145 ~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
.+++++.|.+..+.||+.+|+.++.+..
T Consensus 178 ~eilFLSDn~~EL~AA~~vGl~t~l~~R 205 (229)
T COG4229 178 AEILFLSDNPEELKAAAGVGLATGLAVR 205 (229)
T ss_pred hheEEecCCHHHHHHHHhcchheeeeec
Confidence 9999999999999999999999998765
No 108
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.39 E-value=9.5e-07 Score=89.89 Aligned_cols=88 Identities=22% Similarity=0.278 Sum_probs=72.2
Q ss_pred CCCCCchHHHHHHHHHHCCC-cEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 017995 68 KVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~-~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~ 146 (362)
+.+++||+.++|+.|+++|+ +++++|+.++..++..+ +++|+.++|..+. | +.-...+++++..+++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~-~~lgi~~~f~~~~---------p--~~K~~~i~~l~~~~~~ 427 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVA-RELGIDEVHAELL---------P--EDKLEIVKELREKYGP 427 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHH-HHcCChhhhhccC---------c--HHHHHHHHHHHhcCCE
Confidence 46789999999999999999 99999999999999888 8999977664321 2 2223455666667789
Q ss_pred EEEEecCHhhHHHHHHcCCEE
Q 017995 147 SLVIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 147 ~l~igDs~~d~~aA~~aG~~~ 167 (362)
|+||||+.+|+.+++++|+.+
T Consensus 428 v~~vGDg~nD~~al~~A~vgi 448 (536)
T TIGR01512 428 VAMVGDGINDAPALAAADVGI 448 (536)
T ss_pred EEEEeCCHHHHHHHHhCCEEE
Confidence 999999999999999999633
No 109
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.38 E-value=1.2e-06 Score=74.62 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=68.7
Q ss_pred CCCCC-chHHHHHHHHHHCCCcEEEEcCCC---h-----------HhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH
Q 017995 68 KVKAL-PGANRLIKHLSCHGVPMALASNSH---R-----------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 132 (362)
Q Consensus 68 ~~~~~-pgv~~~L~~L~~~g~~~~i~S~~~---~-----------~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~ 132 (362)
...++ |+|.+.|+.|.+.||.+.|+||.. . .-++.++ +.+++. +...++...-.++||.+.+
T Consensus 26 D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il-~~l~ip--~~~~~a~~~d~~RKP~~GM 102 (159)
T PF08645_consen 26 DWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENIL-KELGIP--IQVYAAPHKDPCRKPNPGM 102 (159)
T ss_dssp GGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHH-HHCTS---EEEEECGCSSTTSTTSSHH
T ss_pred HhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHH-HHcCCc--eEEEecCCCCCCCCCchhH
Confidence 45555 489999999999999999999852 1 1222233 455553 3344444444689999999
Q ss_pred HHHHHHHcCC----CCCcEEEEecC-----------HhhHHHHHHcCCEEE
Q 017995 133 FLEAAKRLNM----EPSSSLVIEDS-----------VIGVVAGKAAGMEVV 168 (362)
Q Consensus 133 ~~~~~~~~~~----~p~~~l~igDs-----------~~d~~aA~~aG~~~i 168 (362)
+..++++++. +.++++||||+ ..|.+-|.+.|++..
T Consensus 103 ~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 103 WEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp HHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred HHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 9999998874 89999999996 588999999999864
No 110
>PRK11590 hypothetical protein; Provisional
Probab=98.36 E-value=1.7e-05 Score=70.87 Aligned_cols=164 Identities=12% Similarity=0.075 Sum_probs=102.0
Q ss_pred HHHHHHHHHHH-HHcCCCC-CHHHHHhhcCCCHHHHHHHH--------HH-HhCCCCCHHHHHHHHHHHHHhhh-cCCCC
Q 017995 4 GMFSEVLKTFL-VKYGKEW-DGREKHKIVGKTPLEEAAII--------VE-DYGLPCAKHEFVNEVYSMFSDHL-CKVKA 71 (362)
Q Consensus 4 ~~~~~a~~~~l-~~~g~~~-~~~~~~~~~g~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 71 (362)
.....+|..++ +++|++. +.+....++|.+.....+.. .. ..+. +.+++ +...+.|.+.+ ....+
T Consensus 20 ~d~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~--~~~~~-~~~~~~f~~~~~~~~~~ 96 (211)
T PRK11590 20 QDMFGSFLRYLLRRQPLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGH--SEARL-QALEADFVRWFRDNVTA 96 (211)
T ss_pred cchHHHHHHHHHHhcchhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCC--CHHHH-HHHHHHHHHHHHHhCcC
Confidence 34566777777 8888764 34666777887665533321 11 1133 33332 22222333333 23678
Q ss_pred CchHHHHH-HHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCC-CCCC-C----CC--CHHHHHHHHHHcCC
Q 017995 72 LPGANRLI-KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-EVRT-G----KP--SPDIFLEAAKRLNM 142 (362)
Q Consensus 72 ~pgv~~~L-~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~-d~~~-g----Kp--~p~~~~~~~~~~~~ 142 (362)
+||+.++| +.|++.|++++|+|++++.+++..+ +.+++.. .+.+++.. ++.+ | .+ ..+=...+.+.++.
T Consensus 97 ~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il-~~l~~~~-~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~~ 174 (211)
T PRK11590 97 FPVVQERLTTYLLSSDADVWLITGSPQPLVEQVY-FDTPWLP-RVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIGT 174 (211)
T ss_pred CccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHH-HHccccc-cCceEEEEEEEEEccEECCccCCChHHHHHHHHHhCC
Confidence 99999999 6799999999999999999999888 7777532 24444443 1110 1 11 01112223334466
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 143 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 143 ~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
+...+.+-|||.+|+..-.-+|-++++-+.
T Consensus 175 ~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~ 204 (211)
T PRK11590 175 PLRLYSGYSDSKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CcceEEEecCCcccHHHHHhCCCCEEECcc
Confidence 777888999999999999999888765433
No 111
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.24 E-value=4.4e-06 Score=72.36 Aligned_cols=68 Identities=26% Similarity=0.399 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCEEEEEcCCCCcc---cc-ccchhHhhccccc
Q 017995 125 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT---HR-YTAADEVINSLLD 192 (362)
Q Consensus 125 ~gKp~p~~~~~~~~~~~~~p~~~l~igDs~-~d~~aA~~aG~~~i~v~~~~~~~---~~-~ssa~~vi~~l~e 192 (362)
.|||+|..|..+++.+|++|++|+||||.. .|+-+|.+.||+-+.|.++.... +. -..++...+++.+
T Consensus 179 vGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~ 251 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFAD 251 (262)
T ss_pred ecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHH
Confidence 469999999999999999999999999888 79999999999999998864322 21 2234556666554
No 112
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.17 E-value=6.7e-06 Score=84.16 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=68.5
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 147 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~ 147 (362)
..+++||+.++|+.|+++|++++++|+.++..++..+ +.+|+. +++ + . +| +.-...+++++.++++|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia-~~lgi~-----~~~-~-~---~p--~~K~~~v~~l~~~~~~v 469 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVA-KELGIN-----VRA-E-V---LP--DDKAALIKELQEKGRVV 469 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHcCCc-----EEc-c-C---Ch--HHHHHHHHHHHHcCCEE
Confidence 3568999999999999999999999999999999888 888984 221 1 1 22 22233444555577899
Q ss_pred EEEecCHhhHHHHHHcCCEE
Q 017995 148 LVIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 148 l~igDs~~d~~aA~~aG~~~ 167 (362)
+||||+.+|+.+++++|+.+
T Consensus 470 ~~VGDg~nD~~al~~A~vgi 489 (562)
T TIGR01511 470 AMVGDGINDAPALAQADVGI 489 (562)
T ss_pred EEEeCCCccHHHHhhCCEEE
Confidence 99999999999999999753
No 113
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.15 E-value=1.9e-06 Score=78.46 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcE-EEEecCH-hhHHHHHHcCCEEEEEcC
Q 017995 124 RTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSV-IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 124 ~~gKp~p~~~~~~~~~~~~~p~~~-l~igDs~-~d~~aA~~aG~~~i~v~~ 172 (362)
..+||+|.+|..+++++++++.++ +||||+. +|+.+|+++|+++++|.+
T Consensus 185 ~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~ 235 (236)
T TIGR01460 185 VVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLT 235 (236)
T ss_pred eecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEec
Confidence 368999999999999999999887 9999998 899999999999999965
No 114
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.11 E-value=7.7e-06 Score=75.48 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=58.4
Q ss_pred CCCC-chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHH
Q 017995 69 VKAL-PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF 133 (362)
Q Consensus 69 ~~~~-pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~ 133 (362)
+++. ||+.++|+.|+++|++++|+|+++++.+...| +.+||..+|+.|+++++....||+|+..
T Consensus 144 v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L-~~lGLd~YFdvIIs~Gdv~~~kp~~e~~ 208 (301)
T TIGR01684 144 VRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESM-RKVKLDRYFDIIISGGHKAEEYSTMSTE 208 (301)
T ss_pred cccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHcCCCcccCEEEECCccccCCCCcccc
Confidence 4455 99999999999999999999999999999888 8999999999999999999999988654
No 115
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.06 E-value=2.8e-06 Score=77.82 Aligned_cols=102 Identities=23% Similarity=0.333 Sum_probs=70.8
Q ss_pred CchHHHHHHHHHHCCCcEEEEcCCChHhH-HHHHHhhcCCcCCCcE---EEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 017995 72 LPGANRLIKHLSCHGVPMALASNSHRATI-ESKISYQHGWNESFSV---IVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 147 (362)
Q Consensus 72 ~pgv~~~L~~L~~~g~~~~i~S~~~~~~i-~~~L~~~~gl~~~f~~---iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~ 147 (362)
++-....+++|++.+. +.++||.+..+- .... .-.|-..+..+ ...-+-...|||++.++..++++.+++|++|
T Consensus 167 y~KL~kA~~yLqnP~c-lflatn~D~~~p~~~~~-~ipG~G~~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~i~psRt 244 (306)
T KOG2882|consen 167 YPKLMKALNYLQNPGC-LFLATNRDATTPPTPGV-EIPGAGSFVAAVKFATGRQPIVLGKPSTFMFEYLLEKFNIDPSRT 244 (306)
T ss_pred HHHHHHHHHHhCCCCc-EEEeccCccccCCCCCe-eccCCccHHHHHHHHhcCCCeecCCCCHHHHHHHHHHcCCCcceE
Confidence 4456667888887765 567777665322 0000 00111111111 1222344478999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCEEEEEcCCCC
Q 017995 148 LVIEDSV-IGVVAGKAAGMEVVAVPSLPK 175 (362)
Q Consensus 148 l~igDs~-~d~~aA~~aG~~~i~v~~~~~ 175 (362)
+||||+. +|+.-|++.|+++++|-++..
T Consensus 245 ~mvGDRL~TDIlFG~~~G~~TLLvltGv~ 273 (306)
T KOG2882|consen 245 CMVGDRLDTDILFGKNCGFKTLLVLSGVT 273 (306)
T ss_pred EEEcccchhhhhHhhccCcceEEEecCcC
Confidence 9999999 999999999999999988643
No 116
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.04 E-value=5e-05 Score=64.94 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=70.9
Q ss_pred cCCCCCchHHHHHHHHHHCCCc--EEEEcCCC-------hHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHH
Q 017995 67 CKVKALPGANRLIKHLSCHGVP--MALASNSH-------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 137 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~--~~i~S~~~-------~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~ 137 (362)
....+.|.+.+.++.|++.+.. +.|+||+. ...++. +.+.+|+ ..+... ..|| ..+..++
T Consensus 56 ~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~-~~~~lgI----pvl~h~----~kKP--~~~~~i~ 124 (168)
T PF09419_consen 56 YEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEA-LEKALGI----PVLRHR----AKKP--GCFREIL 124 (168)
T ss_pred CcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHH-HHHhhCC----cEEEeC----CCCC--ccHHHHH
Confidence 3467788999999999998775 99999984 444443 3366775 333221 3466 5555555
Q ss_pred HHcC-----CCCCcEEEEecCH-hhHHHHHHcCCEEEEEcCC
Q 017995 138 KRLN-----MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 138 ~~~~-----~~p~~~l~igDs~-~d~~aA~~aG~~~i~v~~~ 173 (362)
+.++ ..|++++||||.. +|+.+|...|+.+|++..+
T Consensus 125 ~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g 166 (168)
T PF09419_consen 125 KYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG 166 (168)
T ss_pred HHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence 5554 3599999999999 9999999999999998764
No 117
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.01 E-value=2e-05 Score=84.49 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=72.4
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
-+++||+.+.|+.|++.|+++.++|+..+..++... +.+|+.++| .+ -.|+.-..++++++..+.+|+
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia-~~lgi~~~~----~~-------~~p~~K~~~i~~l~~~~~~v~ 716 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIA-KEAGIDEVI----AG-------VLPDGKAEAIKRLQSQGRQVA 716 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCCEEE----eC-------CCHHHHHHHHHHHhhcCCEEE
Confidence 468999999999999999999999999999988888 889985433 22 123444567777888889999
Q ss_pred EEecCHhhHHHHHHcCCEE
Q 017995 149 VIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 149 ~igDs~~d~~aA~~aG~~~ 167 (362)
||||+.+|+.+++++|+.+
T Consensus 717 ~vGDg~nD~~al~~Agvgi 735 (834)
T PRK10671 717 MVGDGINDAPALAQADVGI 735 (834)
T ss_pred EEeCCHHHHHHHHhCCeeE
Confidence 9999999999999999954
No 118
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.97 E-value=2.4e-05 Score=84.32 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=83.5
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC----------------CCCCCHHHH
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 133 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~----------------~gKp~p~~~ 133 (362)
+++||+.++++.|++.|+++.++|+.....+.... +.+|+...++.+++|.+.. +++..|+.-
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia-~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K 606 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIA-RRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK 606 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence 68999999999999999999999999999988877 8899988777777776553 345777777
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEE
Q 017995 134 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 168 (362)
Q Consensus 134 ~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i 168 (362)
..+.+.++-....+.|+||+.+|+.+.++|++.+.
T Consensus 607 ~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia 641 (884)
T TIGR01522 607 MKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVA 641 (884)
T ss_pred HHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEe
Confidence 77777777777899999999999999999996543
No 119
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.94 E-value=9.8e-06 Score=77.15 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHc--------CC-----CCCcEEEEecCH-hhHHHHHHcCCEEEEEcCCCCcccc---ccchhHh
Q 017995 124 RTGKPSPDIFLEAAKRL--------NM-----EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR---YTAADEV 186 (362)
Q Consensus 124 ~~gKp~p~~~~~~~~~~--------~~-----~p~~~l~igDs~-~d~~aA~~aG~~~i~v~~~~~~~~~---~ssa~~v 186 (362)
..|||+|.+|..+++.+ +. ++++++||||+. +|+.+|+++|+.++.|.++...... ...++.+
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~v 309 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLI 309 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEE
Confidence 46999999999998887 43 457999999999 9999999999999999886322211 1124566
Q ss_pred hccccc
Q 017995 187 INSLLD 192 (362)
Q Consensus 187 i~~l~e 192 (362)
+.++.+
T Consensus 310 v~~l~e 315 (321)
T TIGR01456 310 VNDVFD 315 (321)
T ss_pred ECCHHH
Confidence 666665
No 120
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.90 E-value=0.0002 Score=61.68 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=69.4
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC--CC--------cEEEeCCCCC----CCCCCHHH
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SF--------SVIVGSDEVR----TGKPSPDI 132 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~--~f--------~~iv~~~d~~----~gKp~p~~ 132 (362)
+..++.||++++...|+++|..++++|+..+.++..+- ..+||.. .+ +.=+.+.|.. .+-..++.
T Consensus 85 ~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va-~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~ 163 (227)
T KOG1615|consen 85 QKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVA-EQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEV 163 (227)
T ss_pred CCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHH-HHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHH
Confidence 46889999999999999999999999999999998776 7788753 11 1112221211 22335666
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 017995 133 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 162 (362)
Q Consensus 133 ~~~~~~~~~~~p~~~l~igDs~~d~~aA~~ 162 (362)
+....+ +.+-..++||||..+|+.+...
T Consensus 164 i~~lrk--~~~~~~~~mvGDGatDlea~~p 191 (227)
T KOG1615|consen 164 IALLRK--NYNYKTIVMVGDGATDLEAMPP 191 (227)
T ss_pred HHHHHh--CCChheeEEecCCccccccCCc
Confidence 766555 8888999999999999998555
No 121
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=97.88 E-value=0.00017 Score=65.19 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=79.6
Q ss_pred hhcCCCCCchHHHHHHHH--HHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCC----CC-----------CCCC
Q 017995 65 HLCKVKALPGANRLIKHL--SCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD----EV-----------RTGK 127 (362)
Q Consensus 65 ~~~~~~~~pgv~~~L~~L--~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~----d~-----------~~gK 127 (362)
....+++.||+.++++.+ .+.|+.+.|+|.+..-|++.+| ++.|+.+.|+.|++-. +- .+..
T Consensus 66 ~l~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL-~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~ 144 (234)
T PF06888_consen 66 ALRSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETIL-EHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSL 144 (234)
T ss_pred HHHcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHH-HhCCCccccceEEeCCceecCCceEEEeCccCCCCCc
Confidence 346789999999999999 4589999999999999999999 8999999998887641 10 0111
Q ss_pred -C----CHHHHHHHHHH---cCCCCCcEEEEecCHhhHHHHHHcCCEEEEEc
Q 017995 128 -P----SPDIFLEAAKR---LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP 171 (362)
Q Consensus 128 -p----~p~~~~~~~~~---~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~ 171 (362)
| +-.++...+.. -|+.-++++||||+.+|.=.+.+.+-.=++.+
T Consensus 145 C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~ 196 (234)
T PF06888_consen 145 CPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFP 196 (234)
T ss_pred CCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEec
Confidence 1 23445554444 36778999999999999998887765433333
No 122
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.87 E-value=0.00029 Score=62.91 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=69.7
Q ss_pred CCCCCchHHHHHH-HHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCC-CCCC-CC----C--CHHHHHHHHH
Q 017995 68 KVKALPGANRLIK-HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-EVRT-GK----P--SPDIFLEAAK 138 (362)
Q Consensus 68 ~~~~~pgv~~~L~-~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~-d~~~-gK----p--~p~~~~~~~~ 138 (362)
...++||+.++|+ .++++|++++|+|++++..++... +..++..- +.+++.. ++.. |+ + .++=...+.+
T Consensus 92 ~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia-~~~~~~~~-~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~ 169 (210)
T TIGR01545 92 KVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVY-FDSNFIHR-LNLIASQIERGNGGWVLPLRCLGHEKVAQLEQ 169 (210)
T ss_pred hCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHH-Hhcccccc-CcEEEEEeEEeCCceEcCccCCChHHHHHHHH
Confidence 3578999999995 899999999999999999998777 55444332 3444432 2211 11 1 0111222223
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 139 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 139 ~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
.++.+...+.+-|||.+|+..-.-+|-++++-+.
T Consensus 170 ~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~ 203 (210)
T TIGR01545 170 KIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVSKR 203 (210)
T ss_pred HhCCChhheEEecCCcccHHHHHhCCCcEEECcc
Confidence 3455667788999999999999999888765443
No 123
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.81 E-value=4.1e-05 Score=65.02 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=65.1
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC-CC-cEEEeCCCCCCCCCCHHHHHHHH-HHcCCCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SF-SVIVGSDEVRTGKPSPDIFLEAA-KRLNMEP 144 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~-~f-~~iv~~~d~~~gKp~p~~~~~~~-~~~~~~p 144 (362)
.+.++||+.++|+.|++. +.++|+|++++..+..++ +.++... +| +.+++.+++. .+. .+-+ ..++.+.
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl-~~ldp~~~~F~~ri~~rd~~~--~~~----~KdL~~i~~~d~ 127 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIA-KLIDPDGKYFGDRIISRDESG--SPH----TKSLLRLFPADE 127 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHH-HHhCcCCCeeccEEEEeccCC--CCc----cccHHHHcCCCc
Confidence 578899999999999965 999999999999999988 8889884 88 6677777764 111 1223 3357788
Q ss_pred CcEEEEecCHhhHH
Q 017995 145 SSSLVIEDSVIGVV 158 (362)
Q Consensus 145 ~~~l~igDs~~d~~ 158 (362)
+.+++|+|++.-..
T Consensus 128 ~~vvivDd~~~~~~ 141 (156)
T TIGR02250 128 SMVVIIDDREDVWP 141 (156)
T ss_pred ccEEEEeCCHHHhh
Confidence 99999999984444
No 124
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.81 E-value=0.00014 Score=67.12 Aligned_cols=85 Identities=13% Similarity=0.213 Sum_probs=65.1
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHh---HHHHHHhhcCCcCC-CcEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNES-FSVIVGSDEVRTGKPSPDIFLEAAKRLNM 142 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~---i~~~L~~~~gl~~~-f~~iv~~~d~~~gKp~p~~~~~~~~~~~~ 142 (362)
....++||+.++|+.|+++|++++++|+.+... ....| +.+|+... ++.++..++ +++.+..+..+.+..++
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L-kk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I 190 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL-KRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI 190 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH-HHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE
Confidence 467899999999999999999999999987543 33556 77888753 467776653 24556677776666555
Q ss_pred CCCcEEEEecCHhhHHH
Q 017995 143 EPSSSLVIEDSVIGVVA 159 (362)
Q Consensus 143 ~p~~~l~igDs~~d~~a 159 (362)
+++|||...|+..
T Consensus 191 ----vl~vGD~~~Df~~ 203 (266)
T TIGR01533 191 ----VLLFGDNLLDFDD 203 (266)
T ss_pred ----EEEECCCHHHhhh
Confidence 8999999999964
No 125
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=97.78 E-value=9e-05 Score=64.54 Aligned_cols=85 Identities=21% Similarity=0.383 Sum_probs=62.2
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCC----------C---CCHHHHHHH---
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG----------K---PSPDIFLEA--- 136 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~g----------K---p~p~~~~~~--- 136 (362)
|++.++|+.++++|+++.|+|.++..+++.++ +.+|+...+ +++..-+..+ . .....+..+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~-~~~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~ 168 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIA-ERLGIDDDN--VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR 168 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHH-HHTTSSEGG--EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceE--EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence 66669999999999999999999999999888 788875421 3332221111 0 134555555
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHHH
Q 017995 137 AKRLNMEPSSSLVIEDSVIGVVAGK 161 (362)
Q Consensus 137 ~~~~~~~p~~~l~igDs~~d~~aA~ 161 (362)
... +..+..+++|||+.+|+.+++
T Consensus 169 ~~~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 169 DEE-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHH-THTCCEEEEEESSGGGHHHHH
T ss_pred hhc-CCCCCeEEEEECCHHHHHHhC
Confidence 334 788999999999999998865
No 126
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=97.70 E-value=0.00026 Score=57.01 Aligned_cols=115 Identities=12% Similarity=0.171 Sum_probs=89.5
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~ 146 (362)
..-++|+.+.+.++.|++. +.+.|+|.....++.+.. +-.|+.- +.+..+ .+++.=...++.++-+-+.
T Consensus 27 tgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~la-e~~gi~~--~rv~a~-------a~~e~K~~ii~eLkk~~~k 95 (152)
T COG4087 27 TGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLA-EFVGIPV--ERVFAG-------ADPEMKAKIIRELKKRYEK 95 (152)
T ss_pred cCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHH-HHcCCce--eeeecc-------cCHHHHHHHHHHhcCCCcE
Confidence 3578999999999999999 999999999999988777 6667532 334333 3456667777778877799
Q ss_pred EEEEecCHhhHHHHHHcCCEEEEEcCCCCccccccchhHhhccccc
Q 017995 147 SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD 192 (362)
Q Consensus 147 ~l~igDs~~d~~aA~~aG~~~i~v~~~~~~~~~~ssa~~vi~~l~e 192 (362)
|+||||..+|+.+-+++...++.+............++.++++..+
T Consensus 96 ~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e 141 (152)
T COG4087 96 VVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAE 141 (152)
T ss_pred EEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHH
Confidence 9999999999999999999988887633333334466888887776
No 127
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.68 E-value=8.7e-05 Score=68.59 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=64.0
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCCh-----HhHHHHHHhhcCCcCCCcEEEeC----CCCCCCCCCHHHHHHHHHHc
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHR-----ATIESKISYQHGWNESFSVIVGS----DEVRTGKPSPDIFLEAAKRL 140 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~-----~~i~~~L~~~~gl~~~f~~iv~~----~d~~~gKp~p~~~~~~~~~~ 140 (362)
..++++.+++..++..+..+.++++.+. .+.+... +.+++. ...++ +-...+-..+..+..+++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~----~~~s~~~~~ei~~~~~~K~~~l~~l~~~~ 211 (272)
T PRK10530 137 PTFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVE-HELGLE----CEWSWHDQVDIARKGNSKGKRLTQWVEAQ 211 (272)
T ss_pred cceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHh-hhcCce----EEEecCceEEEecCCCChHHHHHHHHHHc
Confidence 3467788888888877777777777542 2333333 444432 11111 11112333567899999999
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCEEE
Q 017995 141 NMEPSSSLVIEDSVIGVVAGKAAGMEVV 168 (362)
Q Consensus 141 ~~~p~~~l~igDs~~d~~aA~~aG~~~i 168 (362)
|+++++|++|||+.+|+.+++.+|+.+.
T Consensus 212 gi~~~e~i~~GD~~NDi~m~~~ag~~va 239 (272)
T PRK10530 212 GWSMKNVVAFGDNFNDISMLEAAGLGVA 239 (272)
T ss_pred CCCHHHeEEeCCChhhHHHHHhcCceEE
Confidence 9999999999999999999999998553
No 128
>PLN02645 phosphoglycolate phosphatase
Probab=97.62 E-value=0.0004 Score=65.87 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=69.6
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHh---HHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 145 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~---i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~ 145 (362)
-.++||+.++|+.|+++|+++.++||++... +...| +.+|+...++.|+++.. .....++..+....
T Consensus 43 ~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l-~~lGi~~~~~~I~ts~~---------~~~~~l~~~~~~~~ 112 (311)
T PLN02645 43 DKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF-ESLGLNVTEEEIFSSSF---------AAAAYLKSINFPKD 112 (311)
T ss_pred CccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH-HHCCCCCChhhEeehHH---------HHHHHHHhhccCCC
Confidence 4689999999999999999999999988333 33345 67888777777777642 34445555565555
Q ss_pred cEEEEecCHhhHHHHHHcCCEEEE
Q 017995 146 SSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 146 ~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
..++++++..+.+.++++|+.++.
T Consensus 113 ~~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 113 KKVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred CEEEEEcCHHHHHHHHHCCCEEec
Confidence 678888889999999999998765
No 129
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=97.54 E-value=0.00037 Score=68.87 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=70.6
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhc--------CCcCCCcEEEeCCC-----------------C
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--------GWNESFSVIVGSDE-----------------V 123 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~--------gl~~~f~~iv~~~d-----------------~ 123 (362)
+..-|.+..+|+.|+++|-++.++||++-+++...+.-.+ ++.++||.||++.. .
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~ 261 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTET 261 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTT
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCC
Confidence 4556799999999999999999999999999998873223 57789999998642 0
Q ss_pred C---CCC-------C---CHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHc-CCEEEEEcC
Q 017995 124 R---TGK-------P---SPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAA-GMEVVAVPS 172 (362)
Q Consensus 124 ~---~gK-------p---~p~~~~~~~~~~~~~p~~~l~igDs~-~d~~aA~~a-G~~~i~v~~ 172 (362)
+ .++ + .-+......+.+|....++++|||+. .|+..++.. |++++.|-+
T Consensus 262 g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ 325 (448)
T PF05761_consen 262 GKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIP 325 (448)
T ss_dssp SSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-T
T ss_pred CccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEeh
Confidence 0 111 1 12335566677889999999999999 899887766 999998865
No 130
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.00076 Score=57.57 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=66.6
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCc-----------------EEEeCCCCCCCCCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-----------------VIVGSDEVRTGKPS 129 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~-----------------~iv~~~d~~~gKp~ 129 (362)
..+++.||.++++++++++++++.|+|++-..++..++ +++.-.+..+ .|+.-+|-.+|-..
T Consensus 70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lf-e~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK 148 (220)
T COG4359 70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLF-EGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDK 148 (220)
T ss_pred hhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHH-HhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCc
Confidence 45899999999999999999999999999999999888 5543111111 12223333344333
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 017995 130 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 164 (362)
Q Consensus 130 p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG 164 (362)
+.... .+.-+++.++|+||+..|+.||+...
T Consensus 149 ~~vI~----~l~e~~e~~fy~GDsvsDlsaaklsD 179 (220)
T COG4359 149 SSVIH----ELSEPNESIFYCGDSVSDLSAAKLSD 179 (220)
T ss_pred chhHH----HhhcCCceEEEecCCcccccHhhhhh
Confidence 44443 34456788999999999999988753
No 131
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.53 E-value=0.00054 Score=72.47 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=66.7
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
-+++||+.++|+.|+++|+++.++|+.....++.+. +.+|+..++ .. . |+-=..++++++ .+..|+
T Consensus 567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia-~~lgi~~~~------~~----~--p~~K~~~v~~l~-~~~~v~ 632 (741)
T PRK11033 567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIA-GELGIDFRA------GL----L--PEDKVKAVTELN-QHAPLA 632 (741)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCeec------CC----C--HHHHHHHHHHHh-cCCCEE
Confidence 478999999999999999999999999999998887 889984221 11 1 222222344444 346899
Q ss_pred EEecCHhhHHHHHHcCCEEEE
Q 017995 149 VIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 149 ~igDs~~d~~aA~~aG~~~i~ 169 (362)
||||+.+|..+.+.+++.+..
T Consensus 633 mvGDgiNDapAl~~A~vgia~ 653 (741)
T PRK11033 633 MVGDGINDAPAMKAASIGIAM 653 (741)
T ss_pred EEECCHHhHHHHHhCCeeEEe
Confidence 999999999999999965543
No 132
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.51 E-value=0.00024 Score=65.72 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=49.8
Q ss_pred CCCC-chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC
Q 017995 69 VKAL-PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 124 (362)
Q Consensus 69 ~~~~-pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~ 124 (362)
+++. |++.++|+.|+++|++++|+|+++++.+...| +.+|+.++|+.|+++++..
T Consensus 146 v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~L-e~lgL~~yFDvII~~g~i~ 201 (303)
T PHA03398 146 VRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSL-KETKLEGYFDIIICGGRKA 201 (303)
T ss_pred cccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHcCCCccccEEEECCCcc
Confidence 4445 99999999999999999999999999999888 8999999999999988775
No 133
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.47 E-value=0.00035 Score=56.26 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=66.9
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHH---HHH-----
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE---AAK----- 138 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~---~~~----- 138 (362)
..+.++|.|.++|+++++.|+-++.+|-+...-+-+.| ..+++..+|+.+|. +|+|.-++. .++
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aL-ral~~~~yFhy~Vi-------ePhP~K~~ML~~llr~i~~e 109 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKAL-RALDLLQYFHYIVI-------EPHPYKFLMLSQLLREINTE 109 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHH-HHhchhhhEEEEEe-------cCCChhHHHHHHHHHHHHHh
Confidence 35889999999999999999999999988888777788 88999999999886 455443332 222
Q ss_pred -HcCCCCCcEEEEecCHhhHHH
Q 017995 139 -RLNMEPSSSLVIEDSVIGVVA 159 (362)
Q Consensus 139 -~~~~~p~~~l~igDs~~d~~a 159 (362)
...+.|++++++.|...-+.-
T Consensus 110 r~~~ikP~~Ivy~DDR~iH~~~ 131 (164)
T COG4996 110 RNQKIKPSEIVYLDDRRIHFGN 131 (164)
T ss_pred hccccCcceEEEEecccccHHH
Confidence 234799999999999844443
No 134
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.43 E-value=0.00024 Score=59.09 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=70.9
Q ss_pred HHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 017995 79 IKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 158 (362)
Q Consensus 79 L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~ 158 (362)
++.|.+.|++++|+|......++... +.+|+ ++++-|. +..-..|.+.++++++.+++|.+|||...|+.
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra-~~LGI----~~~~qG~-----~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlp 113 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRA-KDLGI----KHLYQGI-----SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLP 113 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHH-HHcCC----ceeeech-----HhHHHHHHHHHHHhCCCHHHhhhhcCccccHH
Confidence 56777799999999999999999888 88998 4444432 23458899999999999999999999999999
Q ss_pred HHHHcCCEEEEEcC
Q 017995 159 AGKAAGMEVVAVPS 172 (362)
Q Consensus 159 aA~~aG~~~i~v~~ 172 (362)
.-.+.|+.++.-+.
T Consensus 114 vm~~vGls~a~~dA 127 (170)
T COG1778 114 VMEKVGLSVAVADA 127 (170)
T ss_pred HHHHcCCccccccc
Confidence 99999999876544
No 135
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=97.30 E-value=0.00027 Score=66.34 Aligned_cols=80 Identities=11% Similarity=-0.036 Sum_probs=58.7
Q ss_pred EEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEE
Q 017995 91 LASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 91 i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v 170 (362)
+++.++++|++ +|.+.++. ..|++|+|+++|+..... ...++ .+++.|+.++.+
T Consensus 205 ~a~lsa~~Fi~-iL~~~l~~----~~ivvG~Df~FG~~r~G~-~~l~~--------------------~~~~~gf~v~~v 258 (297)
T cd02169 205 QTALDARIFRK-YIAPALNI----TKRYVGEEPFSRVTAIYN-QTMQE--------------------ELLSPAIEVIEI 258 (297)
T ss_pred HhcCCHHHHHH-HHHHHcCC----cEEEEcCCCCCCCcchhH-HHHHH--------------------hcccCCCEEEEe
Confidence 44557889998 77566776 899999999999877665 33322 256789999999
Q ss_pred cCCCCccccccchhHhhcccccccccc
Q 017995 171 PSLPKQTHRYTAADEVINSLLDLRPEK 197 (362)
Q Consensus 171 ~~~~~~~~~~ssa~~vi~~l~el~~~~ 197 (362)
+....++..+|| +.+++.+.+++++.
T Consensus 259 ~~~~~~g~~ISS-T~IR~~l~~G~v~~ 284 (297)
T cd02169 259 ERKKYDGQPISA-STVRQLLKEGNLEE 284 (297)
T ss_pred cccccCCcEEcH-HHHHHHHHcCCHHH
Confidence 987777777754 66666666787764
No 136
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=97.08 E-value=0.0036 Score=55.42 Aligned_cols=104 Identities=17% Similarity=0.158 Sum_probs=81.8
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCC-CCCHHHHHHHHHHcCCCCCc
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG-KPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~g-Kp~p~~~~~~~~~~~~~p~~ 146 (362)
....++++...++..+..|+++.|.|+........++ ..-+-.+.-+.+-+-.|...| |-....|..+.+.+|.++.+
T Consensus 121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllf-g~s~~gdl~~y~~gyfDt~iG~K~e~~sy~~I~~~Ig~s~~e 199 (254)
T KOG2630|consen 121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLF-GYSDAGDLRKYISGYFDTTIGLKVESQSYKKIGHLIGKSPRE 199 (254)
T ss_pred cccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHH-cccCcchHHHHhhhhhhccccceehhHHHHHHHHHhCCChhh
Confidence 4578999999999999999999999999888665444 322211211233334455555 66789999999999999999
Q ss_pred EEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 147 SLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 147 ~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
.+++-|.+....+|+.+|+.+..+..
T Consensus 200 iLfLTd~~~Ea~aa~~aGl~a~l~~r 225 (254)
T KOG2630|consen 200 ILFLTDVPREAAAARKAGLQAGLVSR 225 (254)
T ss_pred eEEeccChHHHHHHHhcccceeeeec
Confidence 99999999999999999999877654
No 137
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.97 E-value=0.0025 Score=69.07 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=74.0
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCC----cEEEeCCCC----------------CCCCC
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF----SVIVGSDEV----------------RTGKP 128 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f----~~iv~~~d~----------------~~gKp 128 (362)
-++.|++.+.++.|++.|+++.++|+.....+.... +.+|+...= ...+.+.++ -+++-
T Consensus 536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia-~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~ 614 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAIC-RRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRV 614 (917)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHH-HHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEec
Confidence 357999999999999999999999999988877766 788885311 112333221 13344
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 129 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 129 ~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
.|+-=..+.+.++-..+.|.|+||+.+|+.+.++|++.+..
T Consensus 615 ~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~ 655 (917)
T TIGR01116 615 EPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAM 655 (917)
T ss_pred CHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEEC
Confidence 45555666666666678899999999999999999996543
No 138
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=96.89 E-value=0.0052 Score=54.95 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=49.3
Q ss_pred cCCChHhHHHHHHhhcCCc----CCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEE
Q 017995 93 SNSHRATIESKISYQHGWN----ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 168 (362)
Q Consensus 93 S~~~~~~i~~~L~~~~gl~----~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i 168 (362)
++.....+...+ ...++. .+|..|.... ..|+ ..+..+++.+|+++++|++|||+.+|+.+.+.+|..+.
T Consensus 146 ~~~~~~~~~~~l-~~~~~~~~~~~~~~ei~~~~---~~Kg--~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 146 SDSRMPRFTALL-ADLGLAIVQGNRFSHVLGAS---SSKG--KAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred chhHHHHHHHHH-HHcCCeEEecCCeeEEecCC---CCHH--HHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 344444555556 444554 3333333322 1243 56789999999999999999999999999999998875
Q ss_pred E
Q 017995 169 A 169 (362)
Q Consensus 169 ~ 169 (362)
+
T Consensus 220 ~ 220 (221)
T TIGR02463 220 I 220 (221)
T ss_pred e
Confidence 3
No 139
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=96.80 E-value=0.0053 Score=63.87 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=69.8
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
-++.||+.+.++.|++.|+++.++|+.....+...- +.+|+. .+++ .-.|+.=....+.++-....+.
T Consensus 445 D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA-~~lGI~----~v~a-------~~~PedK~~~v~~lq~~g~~Va 512 (675)
T TIGR01497 445 DIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIA-AEAGVD----DFIA-------EATPEDKIALIRQEQAEGKLVA 512 (675)
T ss_pred ccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCC----EEEc-------CCCHHHHHHHHHHHHHcCCeEE
Confidence 368999999999999999999999999999888777 888984 3332 1234444444444444456799
Q ss_pred EEecCHhhHHHHHHcCCEEEEE
Q 017995 149 VIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 149 ~igDs~~d~~aA~~aG~~~i~v 170 (362)
|+||..+|..+-+++++.+..-
T Consensus 513 mvGDG~NDapAL~~AdvGiAm~ 534 (675)
T TIGR01497 513 MTGDGTNDAPALAQADVGVAMN 534 (675)
T ss_pred EECCCcchHHHHHhCCEeEEeC
Confidence 9999999999999999887653
No 140
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=96.75 E-value=0.0057 Score=47.87 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=53.9
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChH---hHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 143 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~---~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~ 143 (362)
....++||+.++|+.|+++|.++.++||++.. .....| +.+|+.-.-+.|+++. ......+++. ..
T Consensus 11 ~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~---------~~~~~~l~~~-~~ 79 (101)
T PF13344_consen 11 NGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSG---------MAAAEYLKEH-KG 79 (101)
T ss_dssp ETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHH---------HHHHHHHHHH-TT
T ss_pred eCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChH---------HHHHHHHHhc-CC
Confidence 35678999999999999999999999998632 233455 6788865446666643 2333333332 33
Q ss_pred CCcEEEEecCHhhHHHHHHcCC
Q 017995 144 PSSSLVIEDSVIGVVAGKAAGM 165 (362)
Q Consensus 144 p~~~l~igDs~~d~~aA~~aG~ 165 (362)
..+++++|-. ...+..+++|+
T Consensus 80 ~~~v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 80 GKKVYVLGSD-GLREELREAGF 100 (101)
T ss_dssp SSEEEEES-H-HHHHHHHHTTE
T ss_pred CCEEEEEcCH-HHHHHHHHcCC
Confidence 5667777644 44455566665
No 141
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.62 E-value=0.0054 Score=56.94 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=56.8
Q ss_pred HHHHCCCcEEEE---cCCChHhHHHHHHhhcCCc----CCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCC-CcEEEEec
Q 017995 81 HLSCHGVPMALA---SNSHRATIESKISYQHGWN----ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP-SSSLVIED 152 (362)
Q Consensus 81 ~L~~~g~~~~i~---S~~~~~~i~~~L~~~~gl~----~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p-~~~l~igD 152 (362)
.++..++...++ +....+.+...+ ...++. .+|..|+... .....+..+++.+++++ ++|++|||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~ei~~~~------~Kg~al~~l~~~~~i~~~~~v~~~GD 215 (273)
T PRK00192 143 LAKDREFSEPFLWNGSEAAKERFEEAL-KRLGLKVTRGGRFLHLLGGG------DKGKAVRWLKELYRRQDGVETIALGD 215 (273)
T ss_pred HHHhcccCCceeecCchHHHHHHHHHH-HHcCCEEEECCeEEEEeCCC------CHHHHHHHHHHHHhccCCceEEEEcC
Confidence 344455554544 333344444455 444553 3333343332 23357888889999999 99999999
Q ss_pred CHhhHHHHHHcCCEEEEEcC
Q 017995 153 SVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 153 s~~d~~aA~~aG~~~i~v~~ 172 (362)
+.+|+.+++.+|+.++.-+.
T Consensus 216 s~NDi~m~~~ag~~vam~NA 235 (273)
T PRK00192 216 SPNDLPMLEAADIAVVVPGP 235 (273)
T ss_pred ChhhHHHHHhCCeeEEeCCC
Confidence 99999999999999877654
No 142
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.61 E-value=0.0053 Score=54.09 Aligned_cols=96 Identities=18% Similarity=0.186 Sum_probs=69.7
Q ss_pred cCCCCCchHHHHHHHHHHCCC-cEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCC------------------CCC-
Q 017995 67 CKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEV------------------RTG- 126 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~-~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~------------------~~g- 126 (362)
..++.-||+.++++.+++.|- .+.|+|.+..-|++..| +++++.+.|..|.+-... ...
T Consensus 81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~L-ea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CP 159 (256)
T KOG3120|consen 81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEIL-EAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCP 159 (256)
T ss_pred hcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHH-HHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCc
Confidence 568999999999999999885 89999999999999999 899999988877653211 000
Q ss_pred ----CCC-HHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 017995 127 ----KPS-PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 163 (362)
Q Consensus 127 ----Kp~-p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~a 163 (362)
|.. -+-|..-..+-|+.-++.+||||+.+|+-.-...
T Consensus 160 sNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~L 201 (256)
T KOG3120|consen 160 SNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRL 201 (256)
T ss_pred hhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhc
Confidence 110 0112222234467778999999999988664433
No 143
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=96.45 E-value=0.017 Score=60.21 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=71.3
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
-++.||+.+.++.|++.|+++.++|+.....+..+- +.+|+.+ ++ ..-.|+.=....+.++-...-+.
T Consensus 440 Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGI~~----v~-------A~~~PedK~~iV~~lQ~~G~~Va 507 (673)
T PRK14010 440 DVIKDGLVERFRELREMGIETVMCTGDNELTAATIA-KEAGVDR----FV-------AECKPEDKINVIREEQAKGHIVA 507 (673)
T ss_pred cCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCce----EE-------cCCCHHHHHHHHHHHHhCCCEEE
Confidence 368999999999999999999999999999887766 8899853 22 23345665666666666667799
Q ss_pred EEecCHhhHHHHHHcCCEEEE
Q 017995 149 VIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 149 ~igDs~~d~~aA~~aG~~~i~ 169 (362)
|+||..+|.-+-++|.+.+..
T Consensus 508 MtGDGvNDAPALa~ADVGIAM 528 (673)
T PRK14010 508 MTGDGTNDAPALAEANVGLAM 528 (673)
T ss_pred EECCChhhHHHHHhCCEEEEe
Confidence 999999999999999877644
No 144
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=96.43 E-value=0.014 Score=60.92 Aligned_cols=90 Identities=14% Similarity=0.144 Sum_probs=71.4
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
-++.||+++.++.|++.|+++.++|+.....+..+- +.+|+++ ++ ..-.|+.=....+.++-...-+.
T Consensus 444 D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGId~----v~-------A~~~PedK~~iV~~lQ~~G~~Va 511 (679)
T PRK01122 444 DIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDD----FL-------AEATPEDKLALIRQEQAEGRLVA 511 (679)
T ss_pred ccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCcE----EE-------ccCCHHHHHHHHHHHHHcCCeEE
Confidence 357899999999999999999999999999887766 8889843 32 23345665666666665667799
Q ss_pred EEecCHhhHHHHHHcCCEEEEE
Q 017995 149 VIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 149 ~igDs~~d~~aA~~aG~~~i~v 170 (362)
|+||..+|.-+-++|.+.+..=
T Consensus 512 MtGDGvNDAPALa~ADVGIAMg 533 (679)
T PRK01122 512 MTGDGTNDAPALAQADVGVAMN 533 (679)
T ss_pred EECCCcchHHHHHhCCEeEEeC
Confidence 9999999999999998876543
No 145
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=96.40 E-value=0.0067 Score=54.24 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=54.2
Q ss_pred EEEEcCCChHhHHHHHHhhcCCcCCCcEEEeC----CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 017995 89 MALASNSHRATIESKISYQHGWNESFSVIVGS----DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 164 (362)
Q Consensus 89 ~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~----~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG 164 (362)
..+.+....+.+...+ +.+++. +. ++.+ +-...+.++...+..+++++|++++++++|||+.+|+.+.+.+|
T Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~--~~-~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag 185 (225)
T TIGR01482 110 VKMRYGIDVDTVREII-KELGLN--LV-AVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPG 185 (225)
T ss_pred EEEeecCCHHHHHHHH-HhcCce--EE-EecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcC
Confidence 4455555555556555 555542 11 1111 11234456678899999999999999999999999999999999
Q ss_pred CEEEEE
Q 017995 165 MEVVAV 170 (362)
Q Consensus 165 ~~~i~v 170 (362)
+.+.+-
T Consensus 186 ~~vam~ 191 (225)
T TIGR01482 186 FGVAVA 191 (225)
T ss_pred ceEEcC
Confidence 987554
No 146
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.40 E-value=0.0088 Score=63.54 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=72.8
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCC----------------------CCC
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------------RTG 126 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~----------------------~~g 126 (362)
-++.|++.+.++.|++.|+++.++|+.....+..+- +.+|+.+. ++++++. -+.
T Consensus 441 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfA 516 (755)
T TIGR01647 441 DPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETA-RRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFA 516 (755)
T ss_pred CCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEE
Confidence 368899999999999999999999999999887766 88898541 2222222 133
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 127 Kp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
+-.|+-=....+.++-....+.|+||..+|.-|-++|.+.+..
T Consensus 517 r~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm 559 (755)
T TIGR01647 517 EVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAV 559 (755)
T ss_pred ecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEe
Confidence 4445554555555555667899999999999999999887554
No 147
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.017 Score=60.50 Aligned_cols=87 Identities=21% Similarity=0.257 Sum_probs=68.0
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
-++.|++.+.++.|++.|+++.++|+..+..++.+- +.+|+++ +++ .-.|+-=....++++-....+.
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA-~~lGId~----v~A-------ellPedK~~~V~~l~~~g~~Va 603 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIA-KELGIDE----VRA-------ELLPEDKAEIVRELQAEGRKVA 603 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcChHh----hec-------cCCcHHHHHHHHHHHhcCCEEE
Confidence 568999999999999999999999999999888777 8898843 322 1223444555566665557899
Q ss_pred EEecCHhhHHHHHHcCCEE
Q 017995 149 VIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 149 ~igDs~~d~~aA~~aG~~~ 167 (362)
||||..+|.-+-..+.+.+
T Consensus 604 mVGDGINDAPALA~AdVGi 622 (713)
T COG2217 604 MVGDGINDAPALAAADVGI 622 (713)
T ss_pred EEeCCchhHHHHhhcCeeE
Confidence 9999999999977776654
No 148
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=96.35 E-value=0.01 Score=53.31 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=53.6
Q ss_pred EEEcCCChHhHHHHHHhhcCCcCCCcEEEeCC--C-CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCE
Q 017995 90 ALASNSHRATIESKISYQHGWNESFSVIVGSD--E-VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 166 (362)
Q Consensus 90 ~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~--d-~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~ 166 (362)
.+.++...+.+...+ +..+. .+..+.+.. + ...+..++..+..+++.+|+++++|++|||+.+|+.+++.+|+.
T Consensus 119 ~~~~~~~~~~~~~~l-~~~~~--~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~ 195 (230)
T PRK01158 119 ALRRTVPVEEVRELL-EELGL--DLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFG 195 (230)
T ss_pred eecccccHHHHHHHH-HHcCC--cEEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCce
Confidence 344555555556666 44443 122222221 1 12344567899999999999999999999999999999999998
Q ss_pred EEEE
Q 017995 167 VVAV 170 (362)
Q Consensus 167 ~i~v 170 (362)
+..-
T Consensus 196 vam~ 199 (230)
T PRK01158 196 VAVA 199 (230)
T ss_pred EEec
Confidence 7554
No 149
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.24 E-value=0.015 Score=63.45 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=74.7
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC----------------CCCCCHHHH
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF 133 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~----------------~gKp~p~~~ 133 (362)
++.|++.++++.|++.|+++.++|+.....+..+- +.+|+.+.-..++.|.++. +++-.|+-=
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA-~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K 657 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIA-RNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDK 657 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHH
Confidence 68899999999999999999999999999887666 8889864323466665532 234455554
Q ss_pred HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 134 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 134 ~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
....+.++-...-+.|+||..+|.-|=++|.+.+..
T Consensus 658 ~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAm 693 (941)
T TIGR01517 658 QLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSM 693 (941)
T ss_pred HHHHHHHHHCCCEEEEECCCCchHHHHHhCCcceec
Confidence 555555554556799999999999999998777643
No 150
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=96.24 E-value=0.016 Score=62.48 Aligned_cols=99 Identities=9% Similarity=0.052 Sum_probs=73.2
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC----------------CCCCCHHH
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDI 132 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~----------------~gKp~p~~ 132 (362)
-++.|++.+.++.|++.|+++.++|+.....+..+- +.+|+.. +.++.|.+.. +++-.|+-
T Consensus 514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA-~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~ 590 (867)
T TIGR01524 514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARIC-QEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQ 590 (867)
T ss_pred CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHH
Confidence 357899999999999999999999999998877666 8889853 2455554432 22334444
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEE
Q 017995 133 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 133 ~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v 170 (362)
=....+.++-....+.|+||..+|.-|-++|++.+..-
T Consensus 591 K~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg 628 (867)
T TIGR01524 591 KSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVD 628 (867)
T ss_pred HHHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeC
Confidence 44444444445567999999999999999998886543
No 151
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.22 E-value=0.013 Score=63.30 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=74.2
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC----------------CCCCCHHH
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDI 132 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~----------------~gKp~p~~ 132 (362)
-++.|++.+.++.|++.|+++.++|+.....+..+- +.+|+.+ +.+++|.+.. +++-.|+-
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~ 625 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTGDSELVAAKVC-HEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMH 625 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHH
Confidence 357899999999999999999999999999887666 8889853 3466665542 23344555
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 133 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 133 ~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
=....+.++-...-+.|+||..+|.-|-++|.+.+..
T Consensus 626 K~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAm 662 (902)
T PRK10517 626 KERIVTLLKREGHVVGFMGDGINDAPALRAADIGISV 662 (902)
T ss_pred HHHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEe
Confidence 4445555554556789999999999999999877654
No 152
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=96.20 E-value=0.0073 Score=52.57 Aligned_cols=78 Identities=14% Similarity=-0.030 Sum_probs=52.9
Q ss_pred EcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEc
Q 017995 92 ASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP 171 (362)
Q Consensus 92 ~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~ 171 (362)
+..++++|++. |.+.++. ..|++|+||++|+...+......+ -.+.|+.+..++
T Consensus 91 a~lsa~~Fi~~-L~~~l~~----~~ivvG~df~FG~~~~G~~~~L~~---------------------~~~~g~~v~~I~ 144 (182)
T smart00764 91 TTLDLRIFRKY-IAPALGI----THRYVGEEPFSPVTAIYNQTMKQT---------------------LLSPAIEVVEIE 144 (182)
T ss_pred hcCCHHHHHHH-HHHHcCc----eEEEEcCCCCCCCCCccCHHHHHH---------------------HhhCCCEEEEEe
Confidence 46789999974 6466766 899999999999765444433211 136789999998
Q ss_pred CCCCccccccchhHhhccccccccc
Q 017995 172 SLPKQTHRYTAADEVINSLLDLRPE 196 (362)
Q Consensus 172 ~~~~~~~~~ssa~~vi~~l~el~~~ 196 (362)
....++..+ ||+.+++.+.++++.
T Consensus 145 r~~~~g~~i-SST~IR~~L~~G~v~ 168 (182)
T smart00764 145 RKKANGQPI-SASTVRKLLKEGNLE 168 (182)
T ss_pred cccCCCcEE-CHHHHHHHHHcCCHH
Confidence 865555544 446666666666644
No 153
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=96.11 E-value=0.012 Score=52.45 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=54.6
Q ss_pred EEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCC--CC-CCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 017995 89 MALASNSHRATIESKISYQHGWNESFSVIVGSD--EV-RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 165 (362)
Q Consensus 89 ~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~--d~-~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~ 165 (362)
..+.+......+...+ +..++.. +.++. ++ ..+..+...+..+++.++++++++++|||+.+|+.+.+.+|+
T Consensus 110 ~~~~~~~~~~~~~~~l-~~~~~~~----~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~ 184 (215)
T TIGR01487 110 VIMREGKDVDEVREII-KERGLNL----VDSGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGF 184 (215)
T ss_pred EEecCCccHHHHHHHH-HhCCeEE----EecCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCC
Confidence 3445666666666666 5555432 21111 11 123445678999999999999999999999999999999999
Q ss_pred EEEEEc
Q 017995 166 EVVAVP 171 (362)
Q Consensus 166 ~~i~v~ 171 (362)
.+..-+
T Consensus 185 ~vam~n 190 (215)
T TIGR01487 185 KVAVAN 190 (215)
T ss_pred eEEcCC
Confidence 876654
No 154
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.08 E-value=0.023 Score=62.53 Aligned_cols=100 Identities=10% Similarity=0.091 Sum_probs=74.2
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCC----------CcEEEeCCCCC--------------
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES----------FSVIVGSDEVR-------------- 124 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~----------f~~iv~~~d~~-------------- 124 (362)
-++.|++.++++.|++.|+++.++|+.....+..+- +.+|+.+. -..+++|.++.
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA-~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~ 723 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIA-QEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALC 723 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcC
Confidence 367899999999999999999999999999887766 88898532 12456665443
Q ss_pred --CCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 125 --TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 125 --~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
+.+-.|+-=....+.++-....+.|+||..+|..+=++|++.+..
T Consensus 724 ~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAm 770 (1053)
T TIGR01523 724 LVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAM 770 (1053)
T ss_pred eEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEec
Confidence 233345444444454544557799999999999999999887653
No 155
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=96.07 E-value=0.048 Score=49.12 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=63.2
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHh---HHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHH-HcCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK-RLNM 142 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~---i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~-~~~~ 142 (362)
...++.|++.++++.|+++|+++.++|+.++.. ...-| ...|+..+ +.++--..-..+|+ ...|....+ ++--
T Consensus 117 ~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL-~~~G~~~~-~~LiLR~~~d~~~~-~~~yKs~~R~~l~~ 193 (229)
T TIGR01675 117 GAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNL-INAGFTGW-KHLILRGLEDSNKT-VVTYKSEVRKSLME 193 (229)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH-HHcCCCCc-CeeeecCCCCCCch-HhHHHHHHHHHHHh
Confidence 468999999999999999999999999998776 44556 56777654 55555431112232 233333222 2222
Q ss_pred CCCcEEE-EecCHhhHHHHHHcCCEEEEEc
Q 017995 143 EPSSSLV-IEDSVIGVVAGKAAGMEVVAVP 171 (362)
Q Consensus 143 ~p~~~l~-igDs~~d~~aA~~aG~~~i~v~ 171 (362)
..-++++ |||...|+.+ ..+|.++.-++
T Consensus 194 ~GYrIv~~iGDq~sDl~G-~~~~~RtFKLP 222 (229)
T TIGR01675 194 EGYRIWGNIGDQWSDLLG-SPPGRRTFKLP 222 (229)
T ss_pred CCceEEEEECCChHHhcC-CCccCceeeCC
Confidence 3345444 4898888864 34454554443
No 156
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.07 E-value=0.0046 Score=52.35 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=61.3
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCC-cCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl-~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~ 146 (362)
.+.+.||+.++|+.|.+. |.+.|.|++.+.+++.++ +.+.- ..+|+.++..+++...+..- ..-+.+++-+.++
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~-~~ldp~~~~~~~~~~r~~~~~~~~~~---~KdL~~l~~~~~~ 108 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVL-DALDPNGKLFSRRLYRDDCTFDKGSY---IKDLSKLGRDLDN 108 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHH-HHHTTTTSSEEEEEEGGGSEEETTEE---E--GGGSSS-GGG
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHH-Hhhhhhcccccccccccccccccccc---ccchHHHhhcccc
Confidence 366899999999999766 999999999999999988 77766 56789999887775333211 2456667778899
Q ss_pred EEEEecCHhhH
Q 017995 147 SLVIEDSVIGV 157 (362)
Q Consensus 147 ~l~igDs~~d~ 157 (362)
+|+|.|++.-.
T Consensus 109 vvivDD~~~~~ 119 (159)
T PF03031_consen 109 VVIVDDSPRKW 119 (159)
T ss_dssp EEEEES-GGGG
T ss_pred EEEEeCCHHHe
Confidence 99999999644
No 157
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=96.05 E-value=0.033 Score=50.84 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 123 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 123 ~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
...+.++...+..+++.+++++++|+++||+.+|+.+.+.++...+++..
T Consensus 162 ~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~n 211 (249)
T TIGR01485 162 LPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSN 211 (249)
T ss_pred EeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECC
Confidence 33567888999999999999999999999999999999997766667754
No 158
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.05 E-value=0.045 Score=50.97 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=60.7
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChH---hHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 144 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~---~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p 144 (362)
.-.++||+.++|+.|+++|+++.++||++.. .....| +.+|+....+.|+++. ......+++....+
T Consensus 16 ~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l-~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~ 85 (279)
T TIGR01452 16 GERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKF-ARLGFNGLAEQLFSSA---------LCAARLLRQPPDAP 85 (279)
T ss_pred CCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEecHH---------HHHHHHHHhhCcCC
Confidence 3468999999999999999999999996532 222355 6678754445555432 33334445544455
Q ss_pred CcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 145 SSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 145 ~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
.+++++|+.. .....+.+|+.++.
T Consensus 86 ~~v~~iG~~~-~~~~l~~~g~~~~~ 109 (279)
T TIGR01452 86 KAVYVIGEEG-LRAELDAAGIRLAG 109 (279)
T ss_pred CEEEEEcCHH-HHHHHHHCCCEEec
Confidence 7899999753 34456778888653
No 159
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.03 E-value=0.021 Score=61.85 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=74.6
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC----------------CCCCCHHH
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDI 132 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~----------------~gKp~p~~ 132 (362)
-++.|++.++++.|++.|+++.++|+.....+..+- +.+|+.. +.+++|.+.. +++-.|+-
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA-~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~ 625 (903)
T PRK15122 549 DPPKESAAPAIAALRENGVAVKVLTGDNPIVTAKIC-REVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQ 625 (903)
T ss_pred CccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHH
Confidence 367899999999999999999999999998877666 8889853 3455555543 33345555
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 133 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 133 ~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
=....+.++-...-+.|+||..+|.-|=++|.+.+..
T Consensus 626 K~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIAm 662 (903)
T PRK15122 626 KSRVLKALQANGHTVGFLGDGINDAPALRDADVGISV 662 (903)
T ss_pred HHHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEEe
Confidence 5555555555567799999999999999999887543
No 160
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=95.77 E-value=0.03 Score=50.63 Aligned_cols=47 Identities=15% Similarity=-0.013 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 123 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 123 ~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
...+.+++..+..+++++++++++|++|||+.+|+.+.+.+|..+.+
T Consensus 154 ~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav 200 (236)
T TIGR02471 154 LPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVV 200 (236)
T ss_pred eeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEE
Confidence 34567788999999999999999999999999999999999877754
No 161
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.03 Score=52.62 Aligned_cols=103 Identities=15% Similarity=0.217 Sum_probs=73.6
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHH--hhcCCcCCCcEEEeCCCCC-----CCCC----CH--------
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVR-----TGKP----SP-------- 130 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~--~~~gl~~~f~~iv~~~d~~-----~gKp----~p-------- 130 (362)
.--|...++|+.|+.+|-++.++||+|-.|+..-+. -.-++.+.||.|++-.+-. ..+| +.
T Consensus 240 ~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wd 319 (510)
T KOG2470|consen 240 ERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWD 319 (510)
T ss_pred hccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhh
Confidence 345577889999999999999999999999987651 1236778999887743211 1111 11
Q ss_pred -------------HHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCEEEEEcC
Q 017995 131 -------------DIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS 172 (362)
Q Consensus 131 -------------~~~~~~~~~~~~~p~~~l~igDs~-~d~~aA~-~aG~~~i~v~~ 172 (362)
+.+...++--|+...+++++||.. .|+..-. ++|+++-++-+
T Consensus 320 kv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~ 376 (510)
T KOG2470|consen 320 KVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP 376 (510)
T ss_pred hhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence 123444555678899999999999 7887755 89999876544
No 162
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=95.49 E-value=0.0052 Score=52.19 Aligned_cols=84 Identities=24% Similarity=0.322 Sum_probs=56.3
Q ss_pred CchHHHHHHHHHHCCCcEEEE--------cCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCC---HHHHHHHHHHc
Q 017995 72 LPGANRLIKHLSCHGVPMALA--------SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS---PDIFLEAAKRL 140 (362)
Q Consensus 72 ~pgv~~~L~~L~~~g~~~~i~--------S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~---p~~~~~~~~~~ 140 (362)
+--..+=++.|++.|+...++ ..++++|++.+|.+.+++ ..||+|+|+++|+.. ++.+...
T Consensus 61 l~s~~ek~~~l~~~Gvd~~~~~~F~~~~~~ls~~~Fi~~iL~~~l~~----~~ivvG~DfrFG~~~~G~~~~L~~~---- 132 (157)
T PF06574_consen 61 LTSLEEKLELLESLGVDYVIVIPFTEEFANLSPEDFIEKILKEKLNV----KHIVVGEDFRFGKNRSGDVELLKEL---- 132 (157)
T ss_dssp SS-HHHHHHHHHHTTESEEEEE-CCCHHCCS-HHHHHHHHCCCHCTE----EEEEEETT-EESGGGEEEHHHHHHC----
T ss_pred CCCHHHHHHHHHHcCCCEEEEecchHHHHcCCHHHHHHHHHHhcCCc----cEEEEccCccCCCCCCCCHHHHHHh----
Confidence 445566778888899887644 457889999888447776 899999999999763 4444432
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCCCccccccc
Q 017995 141 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA 182 (362)
Q Consensus 141 ~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~~~~~~~ss 182 (362)
+++.|+.+..++....++..+||
T Consensus 133 -------------------~~~~g~~v~~v~~~~~~~~~ISS 155 (157)
T PF06574_consen 133 -------------------GKEYGFEVEVVPPVKIDGEKISS 155 (157)
T ss_dssp -------------------TTTT-SEEEEE---EETTEE-SH
T ss_pred -------------------cccCceEEEEECCEEcCCcEeCC
Confidence 66789999999998766777765
No 163
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=95.29 E-value=0.062 Score=58.97 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=71.7
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCC------------------------cEEEeCCCCC-
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF------------------------SVIVGSDEVR- 124 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f------------------------~~iv~~~d~~- 124 (362)
++.|++.+.++.|+++|+++.++|+.+...+.... +.+|+...- ..++.|.++.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia-~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 67899999999999999999999999999887777 777874210 1355554432
Q ss_pred -----------------CCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 125 -----------------TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 125 -----------------~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
+++-.|+-=....+.++-...-+.|+||+.+|+.+=++|.+.+..
T Consensus 647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiam 708 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAM 708 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceec
Confidence 233344444444444444446789999999999999999887653
No 164
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.065 Score=58.21 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=77.9
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCc--EEEeCCCCCC----------------CCCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRT----------------GKPS 129 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~--~iv~~~d~~~----------------gKp~ 129 (362)
.-+|.|+++++++.|++.|+++.++|+.....+..+- +.+|+...-+ .++.|.+... .+=.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa-~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvs 623 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIA-KECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVS 623 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHH-HHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcC
Confidence 4678999999999999999999999999999877666 7888876432 3666766542 1223
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 130 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 130 p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
|+-=..+.+.++-...-+.|+||..+|+-|=++|.+.+.....
T Consensus 624 P~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~ 666 (917)
T COG0474 624 PEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGE 666 (917)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEeccc
Confidence 4443344444444567799999999999999999988866543
No 165
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=95.13 E-value=0.035 Score=48.60 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=54.0
Q ss_pred hcCCCCCchHHHHHHHHHHCCCcEEEEcCCChH-------hHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHH
Q 017995 66 LCKVKALPGANRLIKHLSCHGVPMALASNSHRA-------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 138 (362)
Q Consensus 66 ~~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~-------~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~ 138 (362)
+..++|+||+.++|+.|.+.|+...++|..+.. .-...|.++++...+-+.+++++ |.
T Consensus 69 f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~-----K~---------- 133 (191)
T PF06941_consen 69 FSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD-----KT---------- 133 (191)
T ss_dssp TTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS-----GG----------
T ss_pred hcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC-----CC----------
Confidence 468999999999999999999777777766543 12234433433222213344422 21
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCC
Q 017995 139 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 139 ~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~ 174 (362)
.++.+ ++|+|++.-+..+...|++++......
T Consensus 134 ~v~~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~ 165 (191)
T PF06941_consen 134 LVGGD----VLIDDRPHNLEQFANAGIPVILFDQPY 165 (191)
T ss_dssp GC--S----EEEESSSHHHSS-SSESSEEEEE--GG
T ss_pred eEecc----EEecCChHHHHhccCCCceEEEEcCCC
Confidence 12222 889999999999999999999997743
No 166
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=95.05 E-value=0.03 Score=49.32 Aligned_cols=44 Identities=23% Similarity=0.155 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEE
Q 017995 125 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 168 (362)
Q Consensus 125 ~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i 168 (362)
.+.+++..+..++++++++++++++|||+.+|+.+++.+|+.+.
T Consensus 160 ~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 160 AGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 46778899999999999999999999999999999999998875
No 167
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=94.87 E-value=0.14 Score=51.89 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=65.9
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
-++.|++.+.++.|++.|+++.++|..........- +.+|+ ++.-.|+.-....+.+.-....+.
T Consensus 346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia-~~lgi--------------~~~~~p~~K~~~v~~l~~~g~~v~ 410 (499)
T TIGR01494 346 DPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIA-KELGI--------------FARVTPEEKAALVEALQKKGRVVA 410 (499)
T ss_pred CCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCc--------------eeccCHHHHHHHHHHHHHCCCEEE
Confidence 478999999999999999999999999998877655 77765 123445555555555554457899
Q ss_pred EEecCHhhHHHHHHcCCEE
Q 017995 149 VIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 149 ~igDs~~d~~aA~~aG~~~ 167 (362)
|+||..+|..+-+.+++.+
T Consensus 411 ~vGDg~nD~~al~~Advgi 429 (499)
T TIGR01494 411 MTGDGVNDAPALKKADVGI 429 (499)
T ss_pred EECCChhhHHHHHhCCCcc
Confidence 9999999999988887653
No 168
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=94.33 E-value=0.048 Score=49.74 Aligned_cols=56 Identities=16% Similarity=0.107 Sum_probs=43.7
Q ss_pred EEEeCCCCCCCCCC----HHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc-------CCEEEEEc
Q 017995 116 VIVGSDEVRTGKPS----PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA-------GMEVVAVP 171 (362)
Q Consensus 116 ~iv~~~d~~~gKp~----p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~a-------G~~~i~v~ 171 (362)
.++.+..+-..||. ...+..++++++..+.++++|||+.+|+.+++.+ |...+.|.
T Consensus 151 ~v~~g~~~~e~~p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~ 217 (244)
T TIGR00685 151 EVMDGKAVVELKPRFVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIG 217 (244)
T ss_pred EEEECCeEEEEeeCCCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEe
Confidence 34445444444555 4889999999999999999999999999999888 66666664
No 169
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=94.32 E-value=0.61 Score=39.47 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=59.4
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHH---HHHHhh-----cCCcCCCcEEEeCCCCCC-------CCCCHHHHH
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQ-----HGWNESFSVIVGSDEVRT-------GKPSPDIFL 134 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~---~~L~~~-----~gl~~~f~~iv~~~d~~~-------gKp~p~~~~ 134 (362)
...|++.++++.++++|+++.++|+.+...+. ..| .. .++. ...++++..... -..++..|.
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l-~~~~~~~~~lp--~g~li~~~g~~~~~~~~e~i~~~~~~~K 103 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL-SQIKQDGHNLP--HGPVLLSPDRLFAALHREVISKKPEVFK 103 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH-HHhhhccccCC--CceEEEcCCcchhhhhcccccCCHHHHH
Confidence 56799999999999999999999999988764 455 33 2231 124555443221 123343333
Q ss_pred -----HHHHHcCCCCCcE-EEEecCHhhHHHHHHcCCEE
Q 017995 135 -----EAAKRLNMEPSSS-LVIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 135 -----~~~~~~~~~p~~~-l~igDs~~d~~aA~~aG~~~ 167 (362)
.+.+.+.-..-.. +.+||+.+|+.+=+++|+..
T Consensus 104 ~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~~ 142 (157)
T smart00775 104 IACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIPP 142 (157)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCCh
Confidence 2222222111233 34678889999999999864
No 170
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.27 E-value=0.13 Score=50.14 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=84.3
Q ss_pred CCCCCc--hHHHHHHHHHHCCCcEEEEcC--CChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 017995 68 KVKALP--GANRLIKHLSCHGVPMALASN--SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME 143 (362)
Q Consensus 68 ~~~~~p--gv~~~L~~L~~~g~~~~i~S~--~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~ 143 (362)
+..++| ...++.+.+.+.|-++.++|. -|.+.++..| ...|.+-+---+..+.+++..|.+-..|..+++.-+++
T Consensus 95 KevLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L-~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd 173 (635)
T COG5610 95 KEVLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFL-NSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVD 173 (635)
T ss_pred eeEeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHH-HhcCCCccCceeeecceeehhcccchHHHHHHhhcCCC
Confidence 455666 456789999999999999997 3667777777 66776544334788999999999999999999999999
Q ss_pred CCcEEEEecCH-hhHHHHHHcCCEEEE
Q 017995 144 PSSSLVIEDSV-IGVVAGKAAGMEVVA 169 (362)
Q Consensus 144 p~~~l~igDs~-~d~~aA~~aG~~~i~ 169 (362)
|...+++||.. .|...+++.|+.+..
T Consensus 174 ~~~w~H~GDN~~aD~l~pk~LgI~Tlf 200 (635)
T COG5610 174 PKKWIHCGDNWVADYLKPKNLGISTLF 200 (635)
T ss_pred hhheEEecCchhhhhcCccccchhHHH
Confidence 99999999999 899999999998754
No 171
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=93.40 E-value=0.12 Score=47.13 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEE
Q 017995 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 126 gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v 170 (362)
+-.....+..+++.+++++++|++|||+.+|+.+.+.+|+.+.+-
T Consensus 186 ~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~ 230 (256)
T TIGR00099 186 GVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMG 230 (256)
T ss_pred CCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEec
Confidence 344568899999999999999999999999999999999986653
No 172
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.39 E-value=0.54 Score=46.42 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=75.4
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC----CCCCCHHHHHHHHHHcCCCCC
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----TGKPSPDIFLEAAKRLNMEPS 145 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~----~gKp~p~~~~~~~~~~~~~p~ 145 (362)
.+|...+..+..|+++|+-++|+|-+.+.-+...+ .++. +-|.--+|+. ..-|..+.++.+++++++..+
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF-~khp-----~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~d 328 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVF-RKHP-----DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLD 328 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHH-hhCC-----CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCcc
Confidence 34556788899999999999999999999888888 4432 4555555554 347889999999999999999
Q ss_pred cEEEEecCHhhHHHHHHcCCEEEEE
Q 017995 146 SSLVIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 146 ~~l~igDs~~d~~aA~~aG~~~i~v 170 (362)
..+++.|++...+--++-+= +.++
T Consensus 329 SmvFiDD~p~ErE~vk~~~~-v~Vi 352 (574)
T COG3882 329 SMVFIDDNPAERELVKRELP-VSVI 352 (574)
T ss_pred ceEEecCCHHHHHHHHhcCc-eeec
Confidence 99999999998888777664 4443
No 173
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=93.28 E-value=0.22 Score=55.15 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=34.3
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 110 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl 110 (362)
+-++.|||.++++.|++.|+++.++|+...+.+..+- ...|+
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA-~~~~i 670 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIG-YSCRL 670 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHH-HHhCC
Confidence 3578899999999999999999999998877666554 44455
No 174
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=93.26 E-value=0.26 Score=51.59 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=75.7
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCc----EEEeCCCCCC----------------CCC
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS----VIVGSDEVRT----------------GKP 128 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~----~iv~~~d~~~----------------gKp 128 (362)
-+|.|++++.++.|++.|+++.++|+........+- +++|+...=+ ...+|.+|.- .+-
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~-r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~ 661 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIA-REIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARA 661 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHH-HHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEec
Confidence 468999999999999999999999999999887666 7888866544 4556655541 123
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 129 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 129 ~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
.|..=.++.+.|+-..+=+-|-||..+|.-|-+.|.+.+..
T Consensus 662 ~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAM 702 (972)
T KOG0202|consen 662 EPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAM 702 (972)
T ss_pred CchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceee
Confidence 45555555555665667788899999999998888776543
No 175
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=93.26 E-value=0.55 Score=52.03 Aligned_cols=42 Identities=14% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 111 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~ 111 (362)
-++.|++.+.++.|++.|+++.++|+.....+..+- +.+|+-
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA-~~~gii 696 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVA-RECGIV 696 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCC
Confidence 568999999999999999999999999988877666 777884
No 176
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=93.09 E-value=0.45 Score=50.37 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=64.2
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
-++.|++...+..|++.|+++.++|+.....++..- ++.|+ +.|++- -+|. -=....++++-....+.
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA-~~VGi----~~V~ae-----v~P~--~K~~~Ik~lq~~~~~Va 789 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVA-QQVGI----DNVYAE-----VLPE--QKAEKIKEIQKNGGPVA 789 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHH-HhhCc----ceEEec-----cCch--hhHHHHHHHHhcCCcEE
Confidence 568899999999999999999999999999888776 77884 555542 2332 11223344444557899
Q ss_pred EEecCHhhHHHHHHcCCEE
Q 017995 149 VIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 149 ~igDs~~d~~aA~~aG~~~ 167 (362)
||||..+|.-|-..+.+.+
T Consensus 790 MVGDGINDaPALA~AdVGI 808 (951)
T KOG0207|consen 790 MVGDGINDAPALAQADVGI 808 (951)
T ss_pred EEeCCCCccHHHHhhccce
Confidence 9999999988866665543
No 177
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=92.42 E-value=0.19 Score=46.24 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEc
Q 017995 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP 171 (362)
Q Consensus 126 gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~ 171 (362)
+-.....+..+++.+|++++++++|||+.+|+.+-+.+|..+..-+
T Consensus 194 gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 239 (270)
T PRK10513 194 RVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGN 239 (270)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecC
Confidence 3445688999999999999999999999999999999999876543
No 178
>PRK10976 putative hydrolase; Provisional
Probab=91.90 E-value=0.19 Score=46.12 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 127 Kp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
-.....+..+++.+|++++++++|||+.+|+.+-+.+|..+..-..
T Consensus 189 vsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA 234 (266)
T PRK10976 189 VSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNA 234 (266)
T ss_pred CChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCC
Confidence 3356889999999999999999999999999999999998765543
No 179
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=91.13 E-value=2.9 Score=38.33 Aligned_cols=105 Identities=15% Similarity=0.217 Sum_probs=72.8
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHH--hhcCCc--CC-Cc--EEE----e-C-----------CCCCC
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWN--ES-FS--VIV----G-S-----------DEVRT 125 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~--~~~gl~--~~-f~--~iv----~-~-----------~d~~~ 125 (362)
...-+.+.++++.|+++|+++..+|..+..+....+. +.+|++ .. |. ..+ + . ==+..
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 3445699999999999999999999887665544441 455652 11 10 001 0 0 00112
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHH----HHHcCCEEEEEcCC
Q 017995 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA----GKAAGMEVVAVPSL 173 (362)
Q Consensus 126 gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~a----A~~aG~~~i~v~~~ 173 (362)
+-+..+.+...+.+++..|+.++||.|+...+.+ ++..|+.++++...
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 2335589999999999999999999999976665 56789999888663
No 180
>PRK10444 UMP phosphatase; Provisional
Probab=91.07 E-value=1.5 Score=40.18 Aligned_cols=52 Identities=25% Similarity=0.301 Sum_probs=37.4
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHH--hhcCCcCCCcEEEeC
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGS 120 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~--~~~gl~~~f~~iv~~ 120 (362)
-.++||+.++|+.|+++|.++.++||++......+.. +.+|+.---+.|+++
T Consensus 16 ~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts 69 (248)
T PRK10444 16 NVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTS 69 (248)
T ss_pred CeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecH
Confidence 3789999999999999999999999987654433331 456764333455543
No 181
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=90.90 E-value=0.45 Score=43.51 Aligned_cols=52 Identities=10% Similarity=0.291 Sum_probs=40.5
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCC---ChHhHHHHHHhhcCCcCCCcEEEeCC
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNS---HRATIESKISYQHGWNESFSVIVGSD 121 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~---~~~~i~~~L~~~~gl~~~f~~iv~~~ 121 (362)
-.++|++.++|+.|+++|.++.++||+ +...+...+ +.+|+....+.|+++.
T Consensus 16 ~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l-~~~g~~~~~~~iit~~ 70 (249)
T TIGR01457 16 KERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML-ASFDIPATLETVFTAS 70 (249)
T ss_pred CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEeeHH
Confidence 457889999999999999999999983 355556667 6788876666677653
No 182
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=90.90 E-value=2.5 Score=36.36 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=67.0
Q ss_pred HHHHHHhhhcC-CCCCchHHHHHHHHHHCCCcEEEEcCCChH---hHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHH
Q 017995 58 VYSMFSDHLCK-VKALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF 133 (362)
Q Consensus 58 ~~~~~~~~~~~-~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~---~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~ 133 (362)
+.+..+....+ .-|..-+++++.--.++|=.+.++|+.... -+...|.+.+.+......++.|+-- .|.-|
T Consensus 101 FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~-----k~~qy 175 (237)
T COG3700 101 FWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKP-----KPGQY 175 (237)
T ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCC-----Ccccc
Confidence 33444444433 334456677777778899999999986543 3444555667776655666666533 22222
Q ss_pred H--HHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 134 L--EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 134 ~--~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
. ..++. ..--++.|||..|+.+|+++|++-|-+-.
T Consensus 176 ~Kt~~i~~----~~~~IhYGDSD~Di~AAkeaG~RgIRilR 212 (237)
T COG3700 176 TKTQWIQD----KNIRIHYGDSDNDITAAKEAGARGIRILR 212 (237)
T ss_pred cccHHHHh----cCceEEecCCchhhhHHHhcCccceeEEe
Confidence 2 12222 23457889999999999999999776643
No 183
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=90.88 E-value=5.6 Score=36.07 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=57.4
Q ss_pred EEcCC-ChHhHHHHHHhhcCCcCCCc--EEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEE
Q 017995 91 LASNS-HRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 91 i~S~~-~~~~i~~~L~~~~gl~~~f~--~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~ 167 (362)
++|++ --..+.+.| ..+|...|. .|.++..+ || ...|..+.+++|-+...-++|||......+|+..++++
T Consensus 180 LVTs~qLVPaLaKcL--Ly~L~~~f~ieNIYSa~kv--GK--~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPF 253 (274)
T TIGR01658 180 LVTSGQLIPSLAKCL--LFRLDTIFRIENVYSSIKV--GK--LQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPF 253 (274)
T ss_pred EEEcCccHHHHHHHH--HhccCCccccccccchhhc--ch--HHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCe
Confidence 44444 333333344 357766664 46665443 44 58999999999998899999999999999999999999
Q ss_pred EEEcCCC
Q 017995 168 VAVPSLP 174 (362)
Q Consensus 168 i~v~~~~ 174 (362)
+-|....
T Consensus 254 w~I~~h~ 260 (274)
T TIGR01658 254 VKIDLHP 260 (274)
T ss_pred EEeecCC
Confidence 9997743
No 184
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=90.88 E-value=0.14 Score=46.36 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=53.6
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHH---HHHhhcCCcCCCcEEEeCCCCCCCCC----CHHHHHHHHHHc
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIES---KISYQHGWNESFSVIVGSDEVRTGKP----SPDIFLEAAKRL 140 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~---~L~~~~gl~~~f~~iv~~~d~~~gKp----~p~~~~~~~~~~ 140 (362)
..+++||+.++++.++++|+.+.++|+.++..-+. -| ...|...+-..+.-+++...++. ..+-...+.++
T Consensus 113 ~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL-~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~- 190 (229)
T PF03767_consen 113 KAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNL-KKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKK- 190 (229)
T ss_dssp GGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHH-HHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHT-
T ss_pred cCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHH-HHcCCCccchhccccccccccccccccchHHHHHHHHc-
Confidence 35899999999999999999999999977664333 34 55676544233333333211111 11222222222
Q ss_pred CCCCCc-EEEEecCHhhHHHHH
Q 017995 141 NMEPSS-SLVIEDSVIGVVAGK 161 (362)
Q Consensus 141 ~~~p~~-~l~igDs~~d~~aA~ 161 (362)
| -+ +++|||...|+..++
T Consensus 191 G---y~Ii~~iGD~~~D~~~~~ 209 (229)
T PF03767_consen 191 G---YRIIANIGDQLSDFSGAK 209 (229)
T ss_dssp T---EEEEEEEESSGGGCHCTH
T ss_pred C---CcEEEEeCCCHHHhhccc
Confidence 2 23 556699999998843
No 185
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=90.82 E-value=1.5 Score=40.55 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=61.6
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHH---HHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHH-HHHcCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIES---KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA-AKRLNM 142 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~---~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~-~~~~~~ 142 (362)
...++.||+.++++.|+++|+++.++|+.++..-+. -| ...|...+ +.++--.+-...+.+.--+... .+++--
T Consensus 142 ~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL-~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~ 219 (275)
T TIGR01680 142 GEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANL-KKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQ 219 (275)
T ss_pred ccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-HHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHH
Confidence 468899999999999999999999999998754322 33 45676544 5555433221222222333322 222222
Q ss_pred CCCcEE-EEecCHhhHHHHHHcCCEEEEEcC
Q 017995 143 EPSSSL-VIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 143 ~p~~~l-~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
+.-+++ .|||...|..+....+-++.-++.
T Consensus 220 eGYrIv~~iGDq~sDl~G~~~g~~RtFKLPN 250 (275)
T TIGR01680 220 EGYNIVGIIGDQWNDLKGEHRGAIRSFKLPN 250 (275)
T ss_pred cCceEEEEECCCHHhccCCCccCcceecCCC
Confidence 334444 459999998654422345555544
No 186
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=90.56 E-value=0.3 Score=43.91 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHHHHcC--CCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 124 RTGKPSPDIFLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 124 ~~gKp~p~~~~~~~~~~~--~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
+.+|+ ......++.++ +++.+|+++||+.+|+.+.+.+|+.+++
T Consensus 179 ~~sK~--~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v 224 (225)
T TIGR02461 179 GSDKG--KAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLV 224 (225)
T ss_pred CCCHH--HHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEec
Confidence 34454 45555556665 4778999999999999999999998763
No 187
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=90.34 E-value=0.47 Score=43.38 Aligned_cols=46 Identities=11% Similarity=-0.038 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHcCCC--CCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 127 KPSPDIFLEAAKRLNME--PSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 127 Kp~p~~~~~~~~~~~~~--p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
-.....+..+++.++++ ++++++|||+.+|+.+.+.+|..+++-+.
T Consensus 175 ~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na 222 (256)
T TIGR01486 175 SDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGP 222 (256)
T ss_pred CCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCC
Confidence 33456688889999999 99999999999999999999999876544
No 188
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=90.07 E-value=0.39 Score=44.12 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChHh---HHHHHHhhcCCcCCCcEEEeC
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGS 120 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~~---i~~~L~~~~gl~~~f~~iv~~ 120 (362)
++||+.++|+.|+++|+++.++||++... +...| +.+|+.--.+.|+++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l-~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL-QRLGFDISEDEVFTP 73 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH-HHcCCCCCHHHeEcH
Confidence 89999999999999999999999966553 44556 667775333555553
No 189
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=89.86 E-value=0.55 Score=41.91 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEE
Q 017995 129 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 129 ~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v 170 (362)
....+..+++.+|++++++++|||+.+|+.+-+.+|..+++=
T Consensus 187 K~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~ 228 (254)
T PF08282_consen 187 KGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMG 228 (254)
T ss_dssp HHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEET
T ss_pred HHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEc
Confidence 457788889999999999999999999999999999986543
No 190
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=89.77 E-value=0.46 Score=43.79 Aligned_cols=44 Identities=7% Similarity=0.044 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEc
Q 017995 128 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP 171 (362)
Q Consensus 128 p~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~ 171 (362)
.....+..+++.+|++++++++|||+.+|+.+-+.+|..+..-+
T Consensus 188 sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 231 (272)
T PRK15126 188 NKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGN 231 (272)
T ss_pred ChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccC
Confidence 35688999999999999999999999999999999998776543
No 191
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=88.78 E-value=0.72 Score=42.58 Aligned_cols=45 Identities=9% Similarity=-0.080 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHcCC---CCCcEEEEecCHhhHHHHHHcCCEEEEE
Q 017995 126 GKPSPDIFLEAAKRLNM---EPSSSLVIEDSVIGVVAGKAAGMEVVAV 170 (362)
Q Consensus 126 gKp~p~~~~~~~~~~~~---~p~~~l~igDs~~d~~aA~~aG~~~i~v 170 (362)
+-.....+..+++.+|+ ++++++.|||+.+|+.+=+.+|+.+++-
T Consensus 185 g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~ 232 (271)
T PRK03669 185 SAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVK 232 (271)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEec
Confidence 33455788999999999 9999999999999999999999887664
No 192
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=88.49 E-value=8.9 Score=32.21 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=62.1
Q ss_pred CCCCCchHHHHHHHHHHC-C-CcEEEEcCCCh-------HhHHHHHHhhcCCcCCCcEEEeCCCCCCCCC--CHHHHHHH
Q 017995 68 KVKALPGANRLIKHLSCH-G-VPMALASNSHR-------ATIESKISYQHGWNESFSVIVGSDEVRTGKP--SPDIFLEA 136 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~-g-~~~~i~S~~~~-------~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp--~p~~~~~~ 136 (362)
.....|....-++.++.. | -.++++||+.- .-....|.+..|+ ..+ -... -|| +.+.+...
T Consensus 59 ~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gI----pVl--RHs~--kKP~ct~E~~~y~ 130 (190)
T KOG2961|consen 59 SLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGI----PVL--RHSV--KKPACTAEEVEYH 130 (190)
T ss_pred ccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCC----ceE--eecc--cCCCccHHHHHHH
Confidence 355667777777777762 2 35788888632 2223344344454 211 1112 233 44555443
Q ss_pred HHHcC-CCCCcEEEEecCH-hhHHHHHHcCCEEEEEcCCCC
Q 017995 137 AKRLN-MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPK 175 (362)
Q Consensus 137 ~~~~~-~~p~~~l~igDs~-~d~~aA~~aG~~~i~v~~~~~ 175 (362)
...-. ..+++++||||.. +|+-.|...|.-.+++.++..
T Consensus 131 ~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~ 171 (190)
T KOG2961|consen 131 FGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVR 171 (190)
T ss_pred hCCcccCChhHeEEEccchhhhHhhhhhccceeEEeccccc
Confidence 22111 6789999999999 999999999999999988644
No 193
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=88.45 E-value=1.2 Score=41.06 Aligned_cols=52 Identities=15% Similarity=0.249 Sum_probs=47.1
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCC
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV 123 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~ 123 (362)
..|.+.+.|..|++.|.-+.+=|-+.++.+...+ +.++|.++|+.|+++..-
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl-~~~~L~~~Fd~ii~~G~~ 194 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSL-KELKLEGYFDIIICGGNK 194 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHH-HHhCCccccEEEEeCCcc
Confidence 5689999999999999999999999999999999 889999999999987543
No 194
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=88.21 E-value=1.7 Score=43.45 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=67.2
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 149 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~ 149 (362)
...||++|-+..||+.|+++.++|+.++-....+- +..|++++. ..-.|+.=....++.+-...=+-|
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA-~EAGVDdfi-----------AeatPEdK~~~I~~eQ~~grlVAM 514 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDDFI-----------AEATPEDKLALIRQEQAEGRLVAM 514 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHH-HHhCchhhh-----------hcCChHHHHHHHHHHHhcCcEEEE
Confidence 36789999999999999999999999887665444 677775441 223456666777777877788999
Q ss_pred EecCHhhHHHHHHcCCEE
Q 017995 150 IEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 150 igDs~~d~~aA~~aG~~~ 167 (362)
.||..+|.-+-.++.+.+
T Consensus 515 tGDGTNDAPALAqAdVg~ 532 (681)
T COG2216 515 TGDGTNDAPALAQADVGV 532 (681)
T ss_pred cCCCCCcchhhhhcchhh
Confidence 999999999877776654
No 195
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=88.17 E-value=3.6 Score=37.13 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=54.9
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCC---hHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSH---RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 144 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~---~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p 144 (362)
...++|++.+.|+.|+++|+++.++||+. ...+...|.+.+|+.-..+.++++.. .....+++.. +.
T Consensus 12 ~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~---------~~~~~l~~~~-~~ 81 (236)
T TIGR01460 12 GHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGS---------VTKDLLRQRF-EG 81 (236)
T ss_pred CCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHH---------HHHHHHHHhC-CC
Confidence 35679999999999999999999999765 33333445243676544555655432 2222223222 33
Q ss_pred CcEEEEecCHhhHHHHHHcCCE
Q 017995 145 SSSLVIEDSVIGVVAGKAAGME 166 (362)
Q Consensus 145 ~~~l~igDs~~d~~aA~~aG~~ 166 (362)
..++++|.. ...+..+.+|+.
T Consensus 82 ~~v~v~G~~-~~~~~l~~~g~~ 102 (236)
T TIGR01460 82 EKVYVIGVG-ELRESLEGLGFR 102 (236)
T ss_pred CEEEEECCH-HHHHHHHHcCCc
Confidence 468888853 445566777765
No 196
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=87.52 E-value=0.65 Score=42.56 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 126 gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
+-.....+..+++.+|+++++++++||+.+|+.+-+.+|..++.-..
T Consensus 187 g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na 233 (264)
T COG0561 187 GVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNA 233 (264)
T ss_pred CCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCC
Confidence 34456788899999999999999999999999999999998876544
No 197
>PLN02887 hydrolase family protein
Probab=87.15 E-value=0.9 Score=46.77 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 127 Kp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
-.....+..+++.+|++++++++|||+.+|+.+-+.+|..+..-+.
T Consensus 506 vSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgNA 551 (580)
T PLN02887 506 TSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSNG 551 (580)
T ss_pred CCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCCC
Confidence 3355788999999999999999999999999999999998765443
No 198
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=86.51 E-value=2.2 Score=45.10 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=65.9
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCc--EEEeCCCCCCCCCCHHHHHHHHHHcCC---
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNM--- 142 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~--~iv~~~d~~~gKp~p~~~~~~~~~~~~--- 142 (362)
+-+..|||++.++.+++.|+.+-++|+..-..++.+- ...|+-..=+ .+.-|.+|+ +-..+-.....-++.+
T Consensus 645 kDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA-~eCGILt~~~d~~~lEG~eFr--~~s~ee~~~i~pkl~VlAR 721 (1034)
T KOG0204|consen 645 KDPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIA-RECGILTPGGDFLALEGKEFR--ELSQEERDKIWPKLRVLAR 721 (1034)
T ss_pred cCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHH-HHcccccCCCccceecchhhh--hcCHHHHHhhhhhheeeec
Confidence 3568999999999999999999999999888776655 5667643322 344555555 2222222222222221
Q ss_pred --------------CCCcEEEE-ecCHhhHHHHHHcCCEE
Q 017995 143 --------------EPSSSLVI-EDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 143 --------------~p~~~l~i-gDs~~d~~aA~~aG~~~ 167 (362)
.-.+++.| ||..+|.-|-++|.+..
T Consensus 722 SSP~DK~lLVk~L~~~g~VVAVTGDGTNDaPALkeADVGl 761 (1034)
T KOG0204|consen 722 SSPNDKHLLVKGLIKQGEVVAVTGDGTNDAPALKEADVGL 761 (1034)
T ss_pred CCCchHHHHHHHHHhcCcEEEEecCCCCCchhhhhcccch
Confidence 34677877 99999999988886654
No 199
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=86.17 E-value=1.5 Score=40.46 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=38.4
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCC
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF 114 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f 114 (362)
...+.+.++|+.|+++|++++++|+.+...+...+ +.+++..++
T Consensus 21 ~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~-~~l~l~~~~ 64 (273)
T PRK00192 21 YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLR-KELGLEDPF 64 (273)
T ss_pred cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCCCE
Confidence 45678999999999999999999999999888888 788886654
No 200
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=85.77 E-value=1.6 Score=42.28 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhc--CCcCCCcEEEeCC-------------CC---------------
Q 017995 74 GANRLIKHLSCHGVPMALASNSHRATIESKISYQH--GWNESFSVIVGSD-------------EV--------------- 123 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~--gl~~~f~~iv~~~-------------d~--------------- 123 (362)
-...+|..+++.|-++.+.||+.-++........+ ++..+|+.+++.. ++
T Consensus 202 ~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p 281 (424)
T KOG2469|consen 202 TIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGP 281 (424)
T ss_pred ccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCCc
Confidence 34448999999999999999999988776663333 5677888877652 00
Q ss_pred --CCCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHH-HHHcCCEEEEEcC
Q 017995 124 --RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVA-GKAAGMEVVAVPS 172 (362)
Q Consensus 124 --~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~-~d~~a-A~~aG~~~i~v~~ 172 (362)
..+.+++.....+++.++....+++++||.. .|+-- -+..|+.++.|.+
T Consensus 282 ~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~p 334 (424)
T KOG2469|consen 282 LEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAP 334 (424)
T ss_pred chhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEeh
Confidence 0234456788888899999999999999999 56544 4566888777655
No 201
>PLN03190 aminophospholipid translocase; Provisional
Probab=85.18 E-value=1.2 Score=49.78 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=29.3
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHH
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIES 102 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~ 102 (362)
-++.+|+.++++.|++.|+++.++|+.....+..
T Consensus 725 D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~ 758 (1178)
T PLN03190 725 DKLQQGVPEAIESLRTAGIKVWVLTGDKQETAIS 758 (1178)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHH
Confidence 5789999999999999999999999977665443
No 202
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=84.86 E-value=1.1 Score=40.69 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=53.1
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeC----CCCC----CCCC-------CHHH
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----DEVR----TGKP-------SPDI 132 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~----~d~~----~gKp-------~p~~ 132 (362)
.+.+.+|+.++++.|.++++|+.|.|.+-.+.++.+| ++.+....--.||+- ++-+ +.-| +...
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL-~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~ 166 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVL-RQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA 166 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHH-HHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHH-HHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence 5889999999999999999999999999999999999 554543211123321 1111 1122 1111
Q ss_pred HH--HHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 017995 133 FL--EAAKRLNMEPSSSLVIEDSVIGVVAGKAA 163 (362)
Q Consensus 133 ~~--~~~~~~~~~p~~~l~igDs~~d~~aA~~a 163 (362)
+. ...+.+ -...+++..|||..|+..|...
T Consensus 167 l~~~~~~~~~-~~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 167 LEDSPYFKQL-KKRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp HTTHHHHHCT-TT--EEEEEESSSGGGGTTTT-
T ss_pred ccCchHHHHh-ccCCcEEEecCccCChHhhcCC
Confidence 11 001111 2457899999999999987655
No 203
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=84.43 E-value=3.6 Score=39.08 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=57.4
Q ss_pred CCCCCchHHHHHHHHHHC----CCcEEEEcCCC---hHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHc
Q 017995 68 KVKALPGANRLIKHLSCH----GVPMALASNSH---RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 140 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~----g~~~~i~S~~~---~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~ 140 (362)
...++||+.++|+.|+.+ |+++.++||+. .......|.+++|+.-..+.|+.+. . .....+++.
T Consensus 14 g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~--------~-~~~~ll~~~ 84 (321)
T TIGR01456 14 GKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH--------S-PYKSLVNKY 84 (321)
T ss_pred CccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh--------H-HHHHHHHHc
Confidence 456799999999999998 99999999986 3333333336677643333444332 1 223333443
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 141 NMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 141 ~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
+ ..+++||.+. -.+.++.+|+..++
T Consensus 85 ~---~~v~viG~~~-~~~~l~~~G~~~vv 109 (321)
T TIGR01456 85 E---KRILAVGTGS-VRGVAEGYGFQNVV 109 (321)
T ss_pred C---CceEEEeChH-HHHHHHHcCCcccc
Confidence 2 3678888654 46667789988654
No 204
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=83.97 E-value=4.1 Score=35.85 Aligned_cols=84 Identities=14% Similarity=0.096 Sum_probs=54.8
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC--CCcEEEeCCCC--------CC----CCCCHHHHH
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SFSVIVGSDEV--------RT----GKPSPDIFL 134 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~--~f~~iv~~~d~--------~~----gKp~p~~~~ 134 (362)
.-..|++.++|+.+.+. |.++|-|.+...+++.++ ..+++.. .+.....-+.+ .. -|+ +.
T Consensus 44 ~~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l-~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~ 117 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKM-TELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LG 117 (195)
T ss_pred EEeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHH-HHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cH
Confidence 46789999999999985 999999999999999988 6666532 11211111211 11 122 11
Q ss_pred HHHHHcC--CCCCcEEEEecCHhhHH
Q 017995 135 EAAKRLN--MEPSSSLVIEDSVIGVV 158 (362)
Q Consensus 135 ~~~~~~~--~~p~~~l~igDs~~d~~ 158 (362)
..-.+++ .+.+++++|.|++.-..
T Consensus 118 ~lw~~l~~~~~~~ntiiVDd~p~~~~ 143 (195)
T TIGR02245 118 VIWALLPEFYSMKNTIMFDDLRRNFL 143 (195)
T ss_pred HhhhhcccCCCcccEEEEeCCHHHHh
Confidence 1222343 37789999999985444
No 205
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.31 E-value=1.2 Score=40.32 Aligned_cols=94 Identities=12% Similarity=0.198 Sum_probs=62.7
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeC-CCCC-------CCCC-------CHHH
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS-DEVR-------TGKP-------SPDI 132 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~-~d~~-------~gKp-------~p~~ 132 (362)
.+.+..|+.++...|+.+++|+.|.|.+--+.++.++.+..++.. +-++++- -+|. +.+| +...
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p-n~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v 214 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP-NVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSV 214 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc-cHHhhhhhhhhcccchhhhhhHHHHHHHccchHH
Confidence 356778999999999999999999999999999888856656555 3334332 1222 3333 1122
Q ss_pred HHHHHHHcC--CCCCcEEEEecCHhhHHHHHH
Q 017995 133 FLEAAKRLN--MEPSSSLVIEDSVIGVVAGKA 162 (362)
Q Consensus 133 ~~~~~~~~~--~~p~~~l~igDs~~d~~aA~~ 162 (362)
+....+.+. -+..++++.||+..|+..|..
T Consensus 215 ~~~~s~yf~~~~~~~nVillGdsigdl~ma~g 246 (298)
T KOG3128|consen 215 LQNESEYFHQLAGRVNVILLGDSIGDLHMADG 246 (298)
T ss_pred HHhhhHHHhhccCCceEEEeccccccchhhcC
Confidence 222233332 356778888999999987643
No 206
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=83.12 E-value=7.5 Score=35.22 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=54.1
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHh-HH---HHHHhhcCCcCCC-cEEEeCCCCCCCCCCHHHHHHHHHHcC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT-IE---SKISYQHGWNESF-SVIVGSDEVRTGKPSPDIFLEAAKRLN 141 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~-i~---~~L~~~~gl~~~f-~~iv~~~d~~~gKp~p~~~~~~~~~~~ 141 (362)
...++.||+.++|.+.-++|..+..+||..++. .. .-| .+.|+...- +++.-- .-.|+...-+..+ ++
T Consensus 119 ~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nL-k~~g~~~~~~~~~llk---k~~k~Ke~R~~~v-~k-- 191 (274)
T COG2503 119 KKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENL-KSEGLPQVLESHLLLK---KDKKSKEVRRQAV-EK-- 191 (274)
T ss_pred cccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHH-HHcCcccccccceEEe---eCCCcHHHHHHHH-hh--
Confidence 357899999999999999999999999987765 22 234 566665432 233322 1224433333333 33
Q ss_pred CCCCcEEEEecCHhhHHH
Q 017995 142 MEPSSSLVIEDSVIGVVA 159 (362)
Q Consensus 142 ~~p~~~l~igDs~~d~~a 159 (362)
+-.-++.|||...|...
T Consensus 192 -~~~iVm~vGDNl~DF~d 208 (274)
T COG2503 192 -DYKIVMLVGDNLDDFGD 208 (274)
T ss_pred -ccceeeEecCchhhhcc
Confidence 33456777999877553
No 207
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.61 E-value=2.9 Score=37.46 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=32.6
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 110 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl 110 (362)
..++.||+.+.++.|.+. .+-.++|.+-+.++++.- ..+|+
T Consensus 81 sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a-~~ig~ 121 (315)
T COG4030 81 SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTA-SMIGV 121 (315)
T ss_pred hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHH-HhcCC
Confidence 378999999999999987 677888888888777655 55555
No 208
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=81.35 E-value=4.2 Score=37.19 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=38.8
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEe
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG 119 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~ 119 (362)
.+-|...+.|+.|+++|+++.++|+.+...+...+ +.+++....+.+++
T Consensus 20 ~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~~~~~~I~ 68 (270)
T PRK10513 20 TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYL-KELHMEQPGDYCIT 68 (270)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHH-HHhCCCCCCCeEEE
Confidence 45567889999999999999999999999888877 77787543234444
No 209
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=80.15 E-value=4.6 Score=35.73 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=34.9
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 111 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~ 111 (362)
..+...++|+.|+++|+++.++|+.+...+...+ +.+++.
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~-~~l~~~ 56 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQ-KALGLT 56 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 3445789999999999999999999999998888 888875
No 210
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=79.58 E-value=3.2 Score=37.86 Aligned_cols=43 Identities=21% Similarity=0.127 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 129 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 129 ~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
+-..+..+++++++++++++++|||.+|+..- ..+...|+|..
T Consensus 166 K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~N 208 (247)
T PF05116_consen 166 KGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGN 208 (247)
T ss_dssp HHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TT
T ss_pred HHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcC
Confidence 45788888999999999999999999999877 77778887765
No 211
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=79.33 E-value=12 Score=34.97 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=59.7
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHH--hhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 144 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~--~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p 144 (362)
..-.+.||+.++++.|++.|-.+.++||++...-+.+.. +.+|+.. +..++.- .|.-.+..+ +++.....
T Consensus 35 ~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-----v~e~~i~--ssa~~~a~y-lk~~~~~~ 106 (306)
T KOG2882|consen 35 LGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-----VKEENIF--SSAYAIADY-LKKRKPFG 106 (306)
T ss_pred ecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-----cCccccc--ChHHHHHHH-HHHhCcCC
Confidence 356899999999999999999999999987665555541 4566532 2222221 122222222 33333455
Q ss_pred CcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 145 SSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 145 ~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
+.+.++|-.... +-.+++|+.+.+...
T Consensus 107 k~Vyvig~~gi~-~eL~~aG~~~~g~~~ 133 (306)
T KOG2882|consen 107 KKVYVIGEEGIR-EELDEAGFEYFGGGP 133 (306)
T ss_pred CeEEEecchhhh-HHHHHcCceeecCCC
Confidence 778888755422 225788888776655
No 212
>PLN02382 probable sucrose-phosphatase
Probab=78.07 E-value=4.2 Score=40.18 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHc---CCCCCcEEEEecCHhhHHHHHHcCC-EEEE
Q 017995 129 SPDIFLEAAKRL---NMEPSSSLVIEDSVIGVVAGKAAGM-EVVA 169 (362)
Q Consensus 129 ~p~~~~~~~~~~---~~~p~~~l~igDs~~d~~aA~~aG~-~~i~ 169 (362)
+...+..+++++ |+++++++++||+.+|+..-+.+|+ .+++
T Consensus 176 Kg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam 220 (413)
T PLN02382 176 KGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMV 220 (413)
T ss_pred HHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEE
Confidence 457788888888 9999999999999999999999995 5544
No 213
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=77.57 E-value=69 Score=32.49 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=54.0
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCC-CC-CC----CC---CC----HHHHHHHH
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-EV-RT----GK---PS----PDIFLEAA 137 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~-d~-~~----gK---p~----p~~~~~~~ 137 (362)
+.|.+.+ .++++|. ..|+|.+++.+++....+.+|+ |.|++.+ ++ .. |+ ++ .+=...+.
T Consensus 111 l~~~a~~---~~~~~g~-~vvVSASp~~~Vepfa~~~LGi----d~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~ 182 (497)
T PLN02177 111 VHPETWR---VFNSFGK-RYIITASPRIMVEPFVKTFLGA----DKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVL 182 (497)
T ss_pred cCHHHHH---HHHhCCC-EEEEECCcHHHHHHHHHHcCCC----CEEEecccEECcCCEEeeeecCCCCCccHHHHHHHH
Confidence 4555444 4456775 4999999999999888334777 5565543 11 01 11 11 11122222
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 138 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 138 ~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
+.++.+... +..|||..|...-..++-..++
T Consensus 183 ~~~g~~~~~-~aYgDS~sD~plL~~a~e~y~V 213 (497)
T PLN02177 183 KEFGDALPD-LGLGDRETDHDFMSICKEGYMV 213 (497)
T ss_pred HHhCCCCce-EEEECCccHHHHHHhCCccEEe
Confidence 345544333 8889999999998887765544
No 214
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=77.32 E-value=4.9 Score=36.05 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=36.0
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 112 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~ 112 (362)
...|.+.++|+.|+++|+++.++|+.+...+...+ +.+|+..
T Consensus 15 ~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~-~~lg~~~ 56 (225)
T TIGR02461 15 YEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYR-EELGVEP 56 (225)
T ss_pred CCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCC
Confidence 34568999999999999999999999988888777 7888754
No 215
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=76.63 E-value=29 Score=28.37 Aligned_cols=101 Identities=22% Similarity=0.232 Sum_probs=52.8
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhH-----HHHHHhhcCCcCCCc-EEEeCCCC--C---CCCCCHHHHHHHHH
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATI-----ESKISYQHGWNESFS-VIVGSDEV--R---TGKPSPDIFLEAAK 138 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i-----~~~L~~~~gl~~~f~-~iv~~~d~--~---~gKp~p~~~~~~~~ 138 (362)
..+..+.+++....++|-++.++-+...... .+.. ...+...... .+....+. . .--.++......+.
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLG-GLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLA 97 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHH-CHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHh-cCcCCCcccccccccccchHhhhhcccchhhHHHHHHHH
Confidence 3344555666666666777877766644322 2222 3444544433 44444432 0 11123445556666
Q ss_pred HcCCCCCcEEEE----ecCHhhHHH---HHHcCCEEEEEc
Q 017995 139 RLNMEPSSSLVI----EDSVIGVVA---GKAAGMEVVAVP 171 (362)
Q Consensus 139 ~~~~~p~~~l~i----gDs~~d~~a---A~~aG~~~i~v~ 171 (362)
...+.|.+++++ |.+++-+++ |++.|+.+|.+.
T Consensus 98 ~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 98 LYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 777899998888 777765554 788899999874
No 216
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=74.05 E-value=5.9 Score=34.95 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 111 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~ 111 (362)
-.+.|...+.|+.|+++|+++.++|+.+...+...+ +.+++.
T Consensus 17 ~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~-~~l~~~ 58 (215)
T TIGR01487 17 RMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALA-VLIGTS 58 (215)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHH-HHhCCC
Confidence 356678999999999999999999999999888877 777764
No 217
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=73.94 E-value=53 Score=30.90 Aligned_cols=42 Identities=14% Similarity=-0.038 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCC--CCCcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 131 DIFLEAAKRLNM--EPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 131 ~~~~~~~~~~~~--~p~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
.....+.+.++- .+-.++.+|||++|+..-..+.+.+++=..
T Consensus 211 ~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi~~~ 254 (302)
T PRK12702 211 QAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVLPSP 254 (302)
T ss_pred HHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEecCC
Confidence 444444444432 355889999999999999999999877433
No 218
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=73.73 E-value=6.3 Score=36.33 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc---CCEEEEEcC
Q 017995 129 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA---GMEVVAVPS 172 (362)
Q Consensus 129 ~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~a---G~~~i~v~~ 172 (362)
....+..+++.+++..++++++||..+|..+-+.+ +...+.|..
T Consensus 175 Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~ 221 (266)
T PRK10187 175 KGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGT 221 (266)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECC
Confidence 45778888999999999999999999999886665 334445543
No 219
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=72.84 E-value=15 Score=29.79 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=33.4
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhH-HHHHHhhcCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATI-ESKISYQHGW 110 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i-~~~L~~~~gl 110 (362)
..+..|+++...|..|+++|+.++++|++...-+ ...| +.+.+
T Consensus 41 ~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L-~~fkv 84 (144)
T KOG4549|consen 41 EEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGL-ETFKV 84 (144)
T ss_pred ceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHH-HHhcc
Confidence 3578899999999999999999999999876544 3344 54443
No 220
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=72.66 E-value=9.6 Score=34.67 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=34.8
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 111 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~ 111 (362)
..+...++|+.|+++|+++.++|+.+...+...+ +.+++.
T Consensus 17 ~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR01486 17 DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLR-KELGLE 56 (256)
T ss_pred CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 4456889999999999999999999999888888 777774
No 221
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=72.34 E-value=7.2 Score=34.62 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=36.1
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 112 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~ 112 (362)
.+-|...+.|+.|+++|+++.++|+.+...+...+ +.+++..
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 61 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAA-KLIGTSG 61 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCCC
Confidence 45678899999999999999999999999888777 7778754
No 222
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=71.72 E-value=8.5 Score=36.09 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=36.9
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCC
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES 113 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~ 113 (362)
...+-+.+.|+.|+++|+++.++|+.....+..+. +.+++..+
T Consensus 18 ~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~-~~Lgl~~p 60 (302)
T PRK12702 18 NSYGAARQALAALERRSIPLVLYSLRTRAQLEHLC-RQLRLEHP 60 (302)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCCCCe
Confidence 45567899999999999999999999999888877 78888653
No 223
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=71.64 E-value=53 Score=36.70 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=30.0
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHH
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 104 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L 104 (362)
+-++-.||.+.++.|++.|+++.++|+...+.+-.+-
T Consensus 649 EDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg 685 (1151)
T KOG0206|consen 649 EDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIG 685 (1151)
T ss_pred echhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHH
Confidence 4567789999999999999999999987666544433
No 224
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=71.13 E-value=3.9 Score=42.23 Aligned_cols=55 Identities=18% Similarity=0.096 Sum_probs=44.6
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc-CCC-cEEEeCCCCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESF-SVIVGSDEVR 124 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~-~~f-~~iv~~~d~~ 124 (362)
.+++.|++.++|+.+.+. |.+.|.|.+.+.++..++ +.++-. .+| +.|++-++-.
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~-~liDP~~~lF~dRIisrde~~ 255 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIA-KLIDPEGKYFGDRIISRDESP 255 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHH-HHhCCCCccccceEEEecCCC
Confidence 478999999999999987 999999999999998887 665543 355 4688877743
No 225
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=71.07 E-value=13 Score=35.74 Aligned_cols=62 Identities=27% Similarity=0.303 Sum_probs=47.6
Q ss_pred cCCcCCC--cEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCC
Q 017995 108 HGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 108 ~gl~~~f--~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~ 174 (362)
.||...| +.|.+.... || -..|..+.+|+|- ...-++|||..-..++|++.+|++.-+....
T Consensus 391 ~gLg~~fpiENIYSa~ki--GK--escFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~PfwrI~~h~ 454 (468)
T KOG3107|consen 391 YGLGSSFPIENIYSATKI--GK--ESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALNMPFWRISSHS 454 (468)
T ss_pred HhcCCcccchhhhhhhhc--cH--HHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCCceEeeccCc
Confidence 4555544 456665544 33 4789999999997 5677888999999999999999999887743
No 226
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=70.36 E-value=8.9 Score=34.79 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=35.5
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 111 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~ 111 (362)
.+-+...+.|+.|+++|++++++|+.+...+...+ +.+++.
T Consensus 16 ~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR00099 16 TISPSTKEALAKLREKGIKVVLATGRPYKEVKNIL-KELGLD 56 (256)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCC
Confidence 45578899999999999999999999998888777 777765
No 227
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=69.25 E-value=9.2 Score=35.08 Aligned_cols=42 Identities=7% Similarity=0.081 Sum_probs=36.5
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 112 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~ 112 (362)
.+-+...+.|+.|+++|+++.++|+.+...+...+ +.+++..
T Consensus 19 ~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 60 (272)
T PRK15126 19 HLGEKTLSTLARLRERDITLTFATGRHVLEMQHIL-GALSLDA 60 (272)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCC
Confidence 46678899999999999999999999999888888 7788754
No 228
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=67.74 E-value=26 Score=29.97 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=58.2
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc-CCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 145 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~-~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~ 145 (362)
.+..+..+|...|..+++. -++..+|....++.+..- .-+... -.+|++..-.- .+| ..+.+..+++
T Consensus 69 ke~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~-~~l~~q~ih~~~l~i~g~--h~K------V~~vrth~id-- 136 (194)
T COG5663 69 KEALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITY-AWLFIQNIHYDHLEIVGL--HHK------VEAVRTHNID-- 136 (194)
T ss_pred HHHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHH-HHHHHhccchhhhhhhcc--ccc------chhhHhhccC--
Confidence 3456667889999999987 578888887777644321 111111 12243221110 122 2334444444
Q ss_pred cEEEEecCH-hhHHHHHHcCCEEEEEcCCC
Q 017995 146 SSLVIEDSV-IGVVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 146 ~~l~igDs~-~d~~aA~~aG~~~i~v~~~~ 174 (362)
++++|+. +-.+.|+++|++++.+++..
T Consensus 137 --lf~ed~~~na~~iAk~~~~~vilins~y 164 (194)
T COG5663 137 --LFFEDSHDNAGQIAKNAGIPVILINSPY 164 (194)
T ss_pred --ccccccCchHHHHHHhcCCcEEEecCcc
Confidence 6778888 88899999999999998843
No 229
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=67.19 E-value=14 Score=32.69 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=36.6
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 111 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~ 111 (362)
-.+-|...+.|+.|+++|++++++|+.+...+...+ ..+++.
T Consensus 14 ~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~-~~~~~~ 55 (254)
T PF08282_consen 14 GKISPETIEALKELQEKGIKLVIATGRSYSSIKRLL-KELGID 55 (254)
T ss_dssp SSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHH-HHTTHC
T ss_pred CeeCHHHHHHHHhhcccceEEEEEccCccccccccc-ccccch
Confidence 346688999999999999999999999999998888 677765
No 230
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=66.69 E-value=16 Score=33.30 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=37.7
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 112 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~ 112 (362)
.+.-+-+.+.|+.++++|+++.++|+.+-..+...+ +.+++..
T Consensus 19 ~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~-~~l~~~~ 61 (264)
T COG0561 19 KTISPETKEALARLREKGVKVVLATGRPLPDVLSIL-EELGLDG 61 (264)
T ss_pred CccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCc
Confidence 346778899999999999999999999999988888 8888864
No 231
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=65.96 E-value=11 Score=33.14 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=34.5
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 111 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~ 111 (362)
.+-|...+.|+.|+++|+++.++|+.+...+..++ +.+++.
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~-~~l~~~ 55 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALA-KLIGTP 55 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCC
Confidence 35567788999999999999999999999888777 777753
No 232
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=65.84 E-value=12 Score=34.12 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=36.0
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 112 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~ 112 (362)
.+-|...+.|+.|+++|+++.++|+.+...+...+ +.+++..
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 61 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRHHVAIHPFY-QALALDT 61 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence 46677889999999999999999999998888777 7777753
No 233
>PRK10976 putative hydrolase; Provisional
Probab=65.83 E-value=11 Score=34.27 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=35.9
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 112 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~ 112 (362)
.+-|...+.|+.|+++|+++.++|+.+...+...+ +.+++..
T Consensus 19 ~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 60 (266)
T PRK10976 19 TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIR-DNLEIKS 60 (266)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence 45567889999999999999999999999888777 7777753
No 234
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=65.02 E-value=16 Score=33.55 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=34.8
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 111 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~ 111 (362)
..+-..+.|+.|+++|+++.++|+.+...+...+ +.+++.
T Consensus 25 i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~-~~l~~~ 64 (271)
T PRK03669 25 DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQ-QTLGLQ 64 (271)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHhCCC
Confidence 4466789999999999999999999999988888 778874
No 235
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=64.10 E-value=43 Score=31.76 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=54.6
Q ss_pred cCCCCCchHHHHHHHHHHCC-CcEEEEcCCChHhHHH---HHHhh-cC--------CcCCCcEEEeCCCCCCCCCCHHHH
Q 017995 67 CKVKALPGANRLIKHLSCHG-VPMALASNSHRATIES---KISYQ-HG--------WNESFSVIVGSDEVRTGKPSPDIF 133 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g-~~~~i~S~~~~~~i~~---~L~~~-~g--------l~~~f~~iv~~~d~~~gKp~p~~~ 133 (362)
-.-.++|||..+.+.|.+.| .++..+||++..+... ++..+ +. +...++.++.+...+.+ ..+
T Consensus 193 ~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~----~~l 268 (373)
T COG4850 193 LTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAARKG----QSL 268 (373)
T ss_pred cccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhhhcc----cHH
Confidence 35789999999999999888 8999999999876542 22111 11 12234555554444333 233
Q ss_pred HHHHHHcCCCCCcEEEEecCH-hhHHH
Q 017995 134 LEAAKRLNMEPSSSLVIEDSV-IGVVA 159 (362)
Q Consensus 134 ~~~~~~~~~~p~~~l~igDs~-~d~~a 159 (362)
..++.++ +....+.|||+- .|.+.
T Consensus 269 ~nil~~~--p~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 269 RNILRRY--PDRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHHHhC--CCceEEEecCCCCcCHHH
Confidence 3344433 445778888887 67664
No 236
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=61.80 E-value=56 Score=27.65 Aligned_cols=95 Identities=20% Similarity=0.247 Sum_probs=58.1
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHH---HHHHhhc---CCcCCCcE-EEeCCCCC-------CCCCCHHHHHH
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQH---GWNESFSV-IVGSDEVR-------TGKPSPDIFLE 135 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~---~~L~~~~---gl~~~f~~-iv~~~d~~-------~gKp~p~~~~~ 135 (362)
...||+.++++.+.++||++.-+|..+..... ..| ... |. .+-+. +..+.+-. .-.++|+.|..
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L-~~~~q~~~-~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK~ 104 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL-AQHQQQGH-NLPDGPVLLSPDSLFSALHREVISKDPEEFKI 104 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH-HHHHhCCc-cCCCCCEEECCcchhhhhhccccccChHHHHH
Confidence 67799999999999999999999998754333 334 322 11 11122 33331110 11346777775
Q ss_pred HH-HHcC-C-C-CCcEEE--EecCHhhHHHHHHcCCE
Q 017995 136 AA-KRLN-M-E-PSSSLV--IEDSVIGVVAGKAAGME 166 (362)
Q Consensus 136 ~~-~~~~-~-~-p~~~l~--igDs~~d~~aA~~aG~~ 166 (362)
++ +.+. . . ...-++ +|++.+|+.+=+++|++
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 54 2222 1 1 233333 48999999999999986
No 237
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=59.76 E-value=23 Score=30.66 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=33.8
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhc
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH 108 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~ 108 (362)
.++-+.+.+.|+.|+++|++++++|+.+...+...+ +.+
T Consensus 16 ~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~-~~~ 54 (204)
T TIGR01484 16 HELSPETIEALERLREAGVKVVLVTGRSLAEIKELL-KQL 54 (204)
T ss_pred CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HhC
Confidence 356688999999999999999999999999998877 443
No 238
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=57.14 E-value=88 Score=25.24 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=31.2
Q ss_pred HHHHHHHHC-CCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHH
Q 017995 77 RLIKHLSCH-GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE 135 (362)
Q Consensus 77 ~~L~~L~~~-g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~ 135 (362)
+=++.|... ++.. ++..++.++++. + ..+.. +.+++|+|+.+|+.....+..
T Consensus 54 eR~~~l~~~~~vd~-v~~~~~~~~~~~-l-~~~~~----~~vv~G~d~~fg~~~~~~~~~ 106 (136)
T cd02170 54 QRAEVVEALKYVDE-VILGHPWSYFKP-L-EELKP----DVIVLGDDQKNGVDEEEVYEE 106 (136)
T ss_pred HHHHHHHcCCCcCE-EEECCCCCHhHH-H-HHHCC----CEEEECCCCCCCCcchhHHHH
Confidence 333444443 5554 344567778774 4 33332 789999999988776555544
No 239
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=56.23 E-value=49 Score=31.60 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=52.4
Q ss_pred HHHHHHHHHC-CCc-EEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcC-CCCCcEEEEec
Q 017995 76 NRLIKHLSCH-GVP-MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN-MEPSSSLVIED 152 (362)
Q Consensus 76 ~~~L~~L~~~-g~~-~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~-~~p~~~l~igD 152 (362)
..+++.|+++ ++. ..++|+.....++.++ +.+++...++..+.+......+-....+..+.+.+. ..|+=++..||
T Consensus 17 ~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd 95 (365)
T TIGR00236 17 APLIRALKKYPEIDSYVIVTAQHREMLDQVL-DLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQGD 95 (365)
T ss_pred HHHHHHHhhCCCCCEEEEEeCCCHHHHHHHH-HhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4567777765 454 4567777777666666 557775332222322111111212222222222222 34555555599
Q ss_pred CHh---hHHHHHHcCCEEEEEcC
Q 017995 153 SVI---GVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 153 s~~---d~~aA~~aG~~~i~v~~ 172 (362)
+.. ...+|+..|++++.+..
T Consensus 96 ~~~~la~a~aa~~~~ipv~h~~~ 118 (365)
T TIGR00236 96 TTTTLAGALAAFYLQIPVGHVEA 118 (365)
T ss_pred chHHHHHHHHHHHhCCCEEEEeC
Confidence 764 55668889999988754
No 240
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=55.87 E-value=90 Score=24.89 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHCC-CcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCC
Q 017995 74 GANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV 123 (362)
Q Consensus 74 gv~~~L~~L~~~g-~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~ 123 (362)
...+=++.|++.| +...+.-.+++++++. + +.++. +.+++|+|+
T Consensus 48 ~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~-l-~~~~~----~~vv~G~D~ 92 (125)
T TIGR01518 48 SYEHRKLILETIRYVDLVIPEKSWEQKKQD-I-IDFNI----DVFVMGDDW 92 (125)
T ss_pred CHHHHHHHHHcCCCccEEecCCCccchHHH-H-HHcCC----CEEEECCCc
Confidence 3344455555554 4444333444555543 4 44444 677777777
No 241
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=55.64 E-value=1e+02 Score=26.90 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHCCCcEE-EEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEec
Q 017995 74 GANRLIKHLSCHGVPMA-LASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 152 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~-i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igD 152 (362)
|..-+-..|+.+|+++. +-++.+.+-+-..+ ...+ .|.|..|.-.....+...-+...+++.+..++-.++||-
T Consensus 100 G~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~-~~~~----pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG 174 (197)
T TIGR02370 100 GKNIVVTMLRANGFDVIDLGRDVPIDTVVEKV-KKEK----PLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGG 174 (197)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH-HHcC----CCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 55555677888999877 33444533333344 3333 266666654544444455555666676777666788888
Q ss_pred CHhhHHHHHHcCCEEEE
Q 017995 153 SVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 153 s~~d~~aA~~aG~~~i~ 169 (362)
....-..|++.|.....
T Consensus 175 ~~~~~~~~~~~gad~~~ 191 (197)
T TIGR02370 175 APVTQDWADKIGADVYG 191 (197)
T ss_pred hhcCHHHHHHhCCcEEe
Confidence 87666678888877544
No 242
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=55.46 E-value=25 Score=32.99 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.1
Q ss_pred CCCCCchHHHHHHHHHHCC-CcEEEEcCCChHhHHHHH
Q 017995 68 KVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKI 104 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g-~~~~i~S~~~~~~i~~~L 104 (362)
+..++|...++++.+++.| +++.++||+....+...|
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L 127 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEEL 127 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHh
Confidence 5789999999999999999 799999999996555444
No 243
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=55.14 E-value=11 Score=35.62 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHHHc--------C-CCCCcEEEEecCH-hhHHHHH---------------HcCCEEEEEcCCC
Q 017995 123 VRTGKPSPDIFLEAAKRL--------N-MEPSSSLVIEDSV-IGVVAGK---------------AAGMEVVAVPSLP 174 (362)
Q Consensus 123 ~~~gKp~p~~~~~~~~~~--------~-~~p~~~l~igDs~-~d~~aA~---------------~aG~~~i~v~~~~ 174 (362)
..+|||++-.|..|...+ + -++....||||.+ .|+..|. ..|+..|.|.++-
T Consensus 267 ~t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV 343 (389)
T KOG1618|consen 267 TTLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGV 343 (389)
T ss_pred cccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeee
Confidence 358899877776664322 2 3567788999999 9999986 6678888887753
No 244
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=54.36 E-value=70 Score=31.16 Aligned_cols=95 Identities=18% Similarity=0.223 Sum_probs=57.5
Q ss_pred HHHHHHHHHCC-CcE-EEEcCCCh--HhHHHHHHhhcCCc-CCCcEEEeCCCCCCCCCCHHHHHHHHHH----c-CCCCC
Q 017995 76 NRLIKHLSCHG-VPM-ALASNSHR--ATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKR----L-NMEPS 145 (362)
Q Consensus 76 ~~~L~~L~~~g-~~~-~i~S~~~~--~~i~~~L~~~~gl~-~~f~~iv~~~d~~~gKp~p~~~~~~~~~----~-~~~p~ 145 (362)
..++..|++.+ +.. .++|+... ++...++ +.+++. +.++.-+.- .+....+..-.++.. + ...|+
T Consensus 20 apli~~~~~~~~~~~~vi~TGQH~d~em~~~~l-e~~~i~~pdy~L~i~~----~~~tl~~~t~~~i~~~~~vl~~~kPD 94 (383)
T COG0381 20 APLVKALEKDPDFELIVIHTGQHRDYEMLDQVL-ELFGIRKPDYDLNIMK----PGQTLGEITGNIIEGLSKVLEEEKPD 94 (383)
T ss_pred hHHHHHHHhCCCCceEEEEecccccHHHHHHHH-HHhCCCCCCcchhccc----cCCCHHHHHHHHHHHHHHHHHhhCCC
Confidence 45677777765 554 56688877 8888888 778886 433433321 111222222222221 1 35677
Q ss_pred cEEEEecCHh---hHHHHHHcCCEEEEEcCCCC
Q 017995 146 SSLVIEDSVI---GVVAGKAAGMEVVAVPSLPK 175 (362)
Q Consensus 146 ~~l~igDs~~---d~~aA~~aG~~~i~v~~~~~ 175 (362)
-+++-||+.+ +..+|....+++..|..+..
T Consensus 95 ~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlR 127 (383)
T COG0381 95 LVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLR 127 (383)
T ss_pred EEEEeCCcchHHHHHHHHHHhCCceEEEecccc
Confidence 6666699984 34457777999999988643
No 245
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=54.33 E-value=76 Score=25.73 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=26.9
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHh
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRAT 99 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~ 99 (362)
..+.+++.+.|+.|+++|+.+.++|+.+...
T Consensus 23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 4577899999999999999999999987654
No 246
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=53.18 E-value=30 Score=31.21 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=37.7
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEe
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG 119 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~ 119 (362)
+..|.+.++++.++++|+++.++|+.+...+..++ ..+++.. .+.+++
T Consensus 21 ~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~-~~~~~~~-p~~~I~ 68 (249)
T TIGR01485 21 QALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQ-KQKPLLT-PDIWVT 68 (249)
T ss_pred HHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHH-hcCCCCC-CCEEEE
Confidence 34578889999999999999999999999888777 6666643 344554
No 247
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=51.23 E-value=2e+02 Score=26.34 Aligned_cols=96 Identities=10% Similarity=0.168 Sum_probs=62.8
Q ss_pred CCCCCchHHHHHHHHHHC---CCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEe-CCCCC--CCCCCHHHHHHHHHHcC
Q 017995 68 KVKALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEVR--TGKPSPDIFLEAAKRLN 141 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~---g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~-~~d~~--~gKp~p~~~~~~~~~~~ 141 (362)
.-.++|+..++++..++. |+.+.-+++.+-...++ | ..+|. +.|-. ++-.+ .|-.+|+.+..+.+..+
T Consensus 102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~-l-~~~G~----~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~ 175 (248)
T cd04728 102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKR-L-EDAGC----AAVMPLGSPIGSGQGLLNPYNLRIIIERAD 175 (248)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-H-HHcCC----CEeCCCCcCCCCCCCCCCHHHHHHHHHhCC
Confidence 456899999999988887 99888455555554554 4 34454 33321 11111 23336888887766532
Q ss_pred CCCCcEEEEe---cCHhhHHHHHHcCCEEEEEcCC
Q 017995 142 MEPSSSLVIE---DSVIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 142 ~~p~~~l~ig---Ds~~d~~aA~~aG~~~i~v~~~ 173 (362)
-.++++ .++.|+..|.+.|...+++.+.
T Consensus 176 ----vpVI~egGI~tpeda~~AmelGAdgVlV~SA 206 (248)
T cd04728 176 ----VPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (248)
T ss_pred ----CcEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 335664 4568999999999999999884
No 248
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=50.73 E-value=45 Score=32.40 Aligned_cols=97 Identities=13% Similarity=0.166 Sum_probs=64.5
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCCh---------HhH---HHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHH
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHR---------ATI---ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA 136 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~---------~~i---~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~ 136 (362)
..++|-+..=|..|.+.||.+.|.||... +|. +.++ .. +.-.|...+....-.+.||...++...
T Consensus 103 ~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~-an--l~vPi~~~~A~~~~~yRKP~tGMwe~~ 179 (422)
T KOG2134|consen 103 RILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIV-AN--LGVPIQLLAAIIKGKYRKPSTGMWEFL 179 (422)
T ss_pred eeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHH-Hh--cCCceEEeeeccCCcccCcchhHHHHH
Confidence 45678888899999999999999998532 222 2222 23 333445444444456889999999888
Q ss_pred HHHcC----CCCCcEEEEecC---------------HhhHHHHHHcCCEEE
Q 017995 137 AKRLN----MEPSSSLVIEDS---------------VIGVVAGKAAGMEVV 168 (362)
Q Consensus 137 ~~~~~----~~p~~~l~igDs---------------~~d~~aA~~aG~~~i 168 (362)
.+.++ +.-..++++||. ..|+.-|.++|++..
T Consensus 180 ~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 180 KRLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred HHHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 76554 334455566663 256777888888754
No 249
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=50.26 E-value=32 Score=36.18 Aligned_cols=45 Identities=4% Similarity=-0.076 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEE--ecCHhhHHHHHHcCCEEEEEcC
Q 017995 128 PSPDIFLEAAKRLNMEPSSSLVI--EDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 128 p~p~~~~~~~~~~~~~p~~~l~i--gDs~~d~~aA~~aG~~~i~v~~ 172 (362)
.....+..+++.++++.++++.| ||+.+|+..-+.+|..+++-..
T Consensus 613 dKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM~~~ 659 (694)
T PRK14502 613 DKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILVQRP 659 (694)
T ss_pred CHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEEcCC
Confidence 34577888889999998999988 9999999999999998877443
No 250
>PRK00208 thiG thiazole synthase; Reviewed
Probab=49.51 E-value=1.7e+02 Score=26.71 Aligned_cols=96 Identities=9% Similarity=0.146 Sum_probs=61.4
Q ss_pred CCCCCchHHHHHHHHHHC---CCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEe-CCCCC--CCCCCHHHHHHHHHHcC
Q 017995 68 KVKALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEVR--TGKPSPDIFLEAAKRLN 141 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~---g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~-~~d~~--~gKp~p~~~~~~~~~~~ 141 (362)
.-.++|+..++++..+.. |+.+.-+++.+-...++ | ..+|. +.|-. ++-.+ .|-.+|+.+..+.+..+
T Consensus 102 ~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~-l-~~~G~----~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~ 175 (250)
T PRK00208 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKR-L-EEAGC----AAVMPLGAPIGSGLGLLNPYNLRIIIEQAD 175 (250)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-H-HHcCC----CEeCCCCcCCCCCCCCCCHHHHHHHHHhcC
Confidence 355789999999888887 99888344444444444 4 34454 33311 11111 23335788777766533
Q ss_pred CCCCcEEEEe---cCHhhHHHHHHcCCEEEEEcCC
Q 017995 142 MEPSSSLVIE---DSVIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 142 ~~p~~~l~ig---Ds~~d~~aA~~aG~~~i~v~~~ 173 (362)
-.++++ .++.|+..|.+.|+..++|.+.
T Consensus 176 ----vpVIveaGI~tpeda~~AmelGAdgVlV~SA 206 (250)
T PRK00208 176 ----VPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (250)
T ss_pred ----CeEEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence 235665 4568999999999999999884
No 251
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=48.60 E-value=33 Score=32.96 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=48.4
Q ss_pred HHHC-CCcE-EEEcCCC--hHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHc-CCCCCcEEEEecCHh-
Q 017995 82 LSCH-GVPM-ALASNSH--RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPSSSLVIEDSVI- 155 (362)
Q Consensus 82 L~~~-g~~~-~i~S~~~--~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~-~~~p~~~l~igDs~~- 155 (362)
|++. ++.+ .|+|+.. ..+-..+. +.+++ ...+.....+....++--...+....+.+ ...|+-+++.||+..
T Consensus 3 l~~~~~~~~~li~tG~H~~~~~g~~~~-~~f~i-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~ 80 (346)
T PF02350_consen 3 LQKDPGFELILIVTGQHLDPEMGDTFF-EGFGI-PKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDRNEA 80 (346)
T ss_dssp HHCSTTEEEEEEEECSS--CHHHHHHH-HHTT---SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHHH
T ss_pred hhhCCCCCEEEEEeCCCCCHHHHHHHH-hhCCC-CCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCchH
Confidence 4443 5555 4567776 66666666 67777 55566665444222222222222222222 247888888899994
Q ss_pred --hHHHHHHcCCEEEEEcCC
Q 017995 156 --GVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 156 --d~~aA~~aG~~~i~v~~~ 173 (362)
...+|...+++++.+..+
T Consensus 81 la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 81 LAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHHhCCCEEEecCC
Confidence 556688899999999887
No 252
>PTZ00174 phosphomannomutase; Provisional
Probab=47.40 E-value=49 Score=29.92 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=30.4
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHH
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 104 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L 104 (362)
-++-|...+.|+.|+++|+.++++|+.+...+...+
T Consensus 21 ~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l 56 (247)
T PTZ00174 21 NPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQL 56 (247)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 345677889999999999999999999888776655
No 253
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=45.40 E-value=8 Score=18.11 Aligned_cols=8 Identities=50% Similarity=0.630 Sum_probs=6.3
Q ss_pred cCcccccc
Q 017995 233 LGIPTANL 240 (362)
Q Consensus 233 lg~pTaNi 240 (362)
|-|||.|.
T Consensus 7 lrfptlnq 14 (14)
T PF08057_consen 7 LRFPTLNQ 14 (14)
T ss_pred eeccccCC
Confidence 77999883
No 254
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=44.80 E-value=1e+02 Score=31.48 Aligned_cols=88 Identities=7% Similarity=0.032 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecC
Q 017995 74 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 153 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs 153 (362)
++...|..+++.+-++++++-.....--..+...+++.- +.+... ..-+.+....-++..|++ ++|||.
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i--~~~~~~-----~~~e~~~~~~~l~~~G~~----~viG~~ 153 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDI--VQRSYV-----TEEDARSCVNDLRARGIG----AVVGAG 153 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce--EEEEec-----CHHHHHHHHHHHHHCCCC----EEECCh
Confidence 555666666777778888876544332233434455421 111111 011222333333444543 667999
Q ss_pred HhhHHHHHHcCCEEEEEcCC
Q 017995 154 VIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 154 ~~d~~aA~~aG~~~i~v~~~ 173 (362)
.. ...|+++|++.+.+...
T Consensus 154 ~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 154 LI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HH-HHHHHHcCCceEEEecH
Confidence 64 67899999999998763
No 255
>PLN02423 phosphomannomutase
Probab=43.35 E-value=29 Score=31.43 Aligned_cols=30 Identities=10% Similarity=-0.170 Sum_probs=27.1
Q ss_pred CCCcEEEEec----CHhhHHHHHHcCCEEEEEcC
Q 017995 143 EPSSSLVIED----SVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 143 ~p~~~l~igD----s~~d~~aA~~aG~~~i~v~~ 172 (362)
++++++++|| ..+|++.-+.-|+.++.|..
T Consensus 199 ~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 199 DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 8999999999 68999998888999988865
No 256
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=42.50 E-value=1.3e+02 Score=30.48 Aligned_cols=101 Identities=12% Similarity=0.194 Sum_probs=57.1
Q ss_pred CCCCCchHHHHHHHHHHCC--CcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHH-c----
Q 017995 68 KVKALPGANRLIKHLSCHG--VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR-L---- 140 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g--~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~-~---- 140 (362)
.++.-|.+...++.+...+ +...++ ...++ .... +..++...-..++.+..+..|++..+.+...+.. .
T Consensus 127 ~Cp~Cp~~v~~~~~~a~~~~~i~~~~i--d~~~~-~~~~-~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~ 202 (517)
T PRK15317 127 SCHNCPDVVQALNLMAVLNPNITHTMI--DGALF-QDEV-EARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARA 202 (517)
T ss_pred CCCCcHHHHHHHHHHHHhCCCceEEEE--EchhC-HhHH-HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccc
Confidence 3455566666666665532 222222 11222 2233 4555543322334444455677776666665543 1
Q ss_pred -----CCCCCcEEEEecCHhhHHHH---HHcCCEEEEEcC
Q 017995 141 -----NMEPSSSLVIEDSVIGVVAG---KAAGMEVVAVPS 172 (362)
Q Consensus 141 -----~~~p~~~l~igDs~~d~~aA---~~aG~~~i~v~~ 172 (362)
....-++++||-.+.++.+| .+.|.+++++..
T Consensus 203 ~~~~~~~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 203 AEELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred hhhcccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 13345899999999999986 456899988864
No 257
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=42.44 E-value=1.6e+02 Score=28.98 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCchH-HHHHHHHHHCCCcEEEEcCCChH
Q 017995 49 CAKHEFVNEVYSMFSDHLCKVKALPGA-NRLIKHLSCHGVPMALASNSHRA 98 (362)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~pgv-~~~L~~L~~~g~~~~i~S~~~~~ 98 (362)
.+.+.+++.+.+.-.+...-+.+..|+ ++.++.|++.|--+.|+|-...-
T Consensus 137 mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~ 187 (423)
T TIGR00190 137 MDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAI 187 (423)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHH
Confidence 456778777777777776667778884 56899999988888999876543
No 258
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=42.14 E-value=90 Score=30.15 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=55.3
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
..-.||+.-+|..|. +.|.+.+.|....-++..++ +.++-..++.+-...+...+--++ - ..-+.+++-++++++
T Consensus 213 f~kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~-d~lDP~g~IsYkLfr~~t~y~~G~--H-vKdls~LNRdl~kVi 287 (393)
T KOG2832|consen 213 FKKRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLL-DALDPKGYISYKLFRGATKYEEGH--H-VKDLSKLNRDLQKVI 287 (393)
T ss_pred eccCchHHHHHHhhc-ccceEEEEecCCccchhhhH-hhcCCcceEEEEEecCcccccCcc--c-hhhhhhhccccceeE
Confidence 346899999999999 55999999999888877777 766655666655555544432221 1 223567888999999
Q ss_pred EEe
Q 017995 149 VIE 151 (362)
Q Consensus 149 ~ig 151 (362)
+|.
T Consensus 288 vVd 290 (393)
T KOG2832|consen 288 VVD 290 (393)
T ss_pred EEE
Confidence 886
No 259
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=41.29 E-value=1.4e+02 Score=30.22 Aligned_cols=103 Identities=14% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHc-------
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL------- 140 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~------- 140 (362)
.++.-|.+...+..|....=.+..-.-...++ .... +..+....-..++.+..+..|++..+.+...+...
T Consensus 128 ~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~-~~~~-~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 205 (515)
T TIGR03140 128 TCQNCPDVVQALNQMALLNPNISHTMIDGALF-QDEV-EALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAAS 205 (515)
T ss_pred CCCCCHHHHHHHHHHHHhCCCceEEEEEchhC-HHHH-HhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccch
Confidence 35556677777766655421121111111222 2233 45555533233444455556777777665555432
Q ss_pred ---CCCCCcEEEEecCHhhHHHH---HHcCCEEEEEcC
Q 017995 141 ---NMEPSSSLVIEDSVIGVVAG---KAAGMEVVAVPS 172 (362)
Q Consensus 141 ---~~~p~~~l~igDs~~d~~aA---~~aG~~~i~v~~ 172 (362)
...+.++++||-.+.++.+| .+.|.++.++..
T Consensus 206 ~~~~~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 206 ALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred hccccCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 24567899999999999986 456889988753
No 260
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=41.21 E-value=80 Score=27.35 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHhhh---cCCCCCchHHHHHHHHHHCCCcEEEEcCCChH--h-----HHHHHHhhcCCcCCCcEE
Q 017995 48 PCAKHEFVNEVYSMFSDHL---CKVKALPGANRLIKHLSCHGVPMALASNSHRA--T-----IESKISYQHGWNESFSVI 117 (362)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---~~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~--~-----i~~~L~~~~gl~~~f~~i 117 (362)
|.|.....+.+...++-.. -+.++.| .+|..++++|+++.++...-.+ + ..... + .+...|+.|
T Consensus 80 P~D~~~~~~rfl~~~~P~~~i~~EtElWP---nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~-r--~~l~~f~~i 153 (186)
T PF04413_consen 80 PLDFPWAVRRFLDHWRPDLLIWVETELWP---NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLF-R--PLLSRFDRI 153 (186)
T ss_dssp --SSHHHHHHHHHHH--SEEEEES----H---HHHHH-----S-EEEEEE--------------HHH-H--HHGGG-SEE
T ss_pred CccCHHHHHHHHHHhCCCEEEEEccccCH---HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHH-H--HHHHhCCEE
Confidence 3333334444444443222 2455565 5788888999999998753221 1 11111 1 122446888
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 017995 118 VGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 158 (362)
Q Consensus 118 v~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~ 158 (362)
.+-++. -..-+.++|++++++.+.||-..|..
T Consensus 154 ~aqs~~---------da~r~~~lG~~~~~v~v~GnlKfd~~ 185 (186)
T PF04413_consen 154 LAQSEA---------DAERFRKLGAPPERVHVTGNLKFDQA 185 (186)
T ss_dssp EESSHH---------HHHHHHTTT-S--SEEE---GGG---
T ss_pred EECCHH---------HHHHHHHcCCCcceEEEeCcchhccc
Confidence 876532 23446689999999999999887753
No 261
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=40.92 E-value=3.2e+02 Score=26.56 Aligned_cols=89 Identities=16% Similarity=0.129 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHCCCcEEEEcCC--ChHhHHHHHHhhcCCcCCCcEEEeC-----CCCCCCCCCHHHHHHHHHHcCCCCCc
Q 017995 74 GANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGS-----DEVRTGKPSPDIFLEAAKRLNMEPSS 146 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S~~--~~~~i~~~L~~~~gl~~~f~~iv~~-----~d~~~gKp~p~~~~~~~~~~~~~p~~ 146 (362)
-+.+.++.+++.++.+.+-.+. ..+.++. + ...|. |.|+.. ..+..+.+++..+...++..+++
T Consensus 119 l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~-l-~eaGv----d~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip--- 189 (368)
T PRK08649 119 LITERIAEIRDAGVIVAVSLSPQRAQELAPT-V-VEAGV----DLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP--- 189 (368)
T ss_pred HHHHHHHHHHhCeEEEEEecCCcCHHHHHHH-H-HHCCC----CEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC---
Confidence 3567888999887766554432 2333333 3 33454 666652 22223344788888888876544
Q ss_pred EEEEecCH--hhHHHHHHcCCEEEEEcC
Q 017995 147 SLVIEDSV--IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 147 ~l~igDs~--~d~~aA~~aG~~~i~v~~ 172 (362)
++.||-. .+.+.+.++|+..|.+..
T Consensus 190 -VIaG~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 190 -VIVGGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred -EEEeCCCCHHHHHHHHHcCCCEEEECC
Confidence 3335543 577778889999998864
No 262
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=40.59 E-value=3.2e+02 Score=26.09 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH--HHHHHHHcC--CCCCcEE
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN--MEPSSSL 148 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~--~~~~~~~~~--~~p~~~l 148 (362)
+-+.++.+.|... +...++-......++..- +..++ -|+.+.+ ....|.-.+ +..+.+..| ++.-.+.
T Consensus 89 Esl~DTarvls~y-~D~iv~R~~~~~~~~~~a-~~~~v-----PVINa~~-~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia 160 (334)
T PRK01713 89 ESMKDTARVLGRM-YDAIEYRGFKQSIVNELA-EYAGV-----PVFNGLT-DEFHPTQMLADVLTMIENCDKPLSEISYV 160 (334)
T ss_pred cCHHHHHHHHHHh-CCEEEEEcCchHHHHHHH-HhCCC-----CEEECCC-CCCChHHHHHHHHHHHHHcCCCcCCcEEE
Confidence 4567777777776 667777666666666544 44432 3555533 334554322 223345554 6777899
Q ss_pred EEecC----H-hhHHHHHHcCCEEEEEcC
Q 017995 149 VIEDS----V-IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 149 ~igDs----~-~d~~aA~~aG~~~i~v~~ 172 (362)
+|||. . ..+.++...|+.+..+.+
T Consensus 161 ~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P 189 (334)
T PRK01713 161 YIGDARNNMGNSLLLIGAKLGMDVRICAP 189 (334)
T ss_pred EECCCccCHHHHHHHHHHHcCCEEEEECC
Confidence 99996 2 467788899999988876
No 263
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=40.52 E-value=1.7e+02 Score=25.37 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHC--CCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 017995 74 GANRLIKHLSCH--GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 151 (362)
Q Consensus 74 gv~~~L~~L~~~--g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~ig 151 (362)
-+..+++.|+++ ++++.+.|.++... +... +.+ .+...+.+.--| .|......++. +.|+-+++++
T Consensus 36 a~~~Li~~l~~~~p~~~illT~~T~tg~-~~~~-~~~--~~~v~~~~~P~D------~~~~~~rfl~~--~~P~~~i~~E 103 (186)
T PF04413_consen 36 AARPLIKRLRKQRPDLRILLTTTTPTGR-EMAR-KLL--PDRVDVQYLPLD------FPWAVRRFLDH--WRPDLLIWVE 103 (186)
T ss_dssp HHHHHHHHHTT---TS-EEEEES-CCHH-HHHH-GG---GGG-SEEE---S------SHHHHHHHHHH--H--SEEEEES
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCchH-HHHH-HhC--CCCeEEEEeCcc------CHHHHHHHHHH--hCCCEEEEEc
Confidence 345778888776 78888888765553 2122 222 111133433333 34566666655 4588899996
Q ss_pred cCH--hhHHHHHHcCCEEEEEcCC
Q 017995 152 DSV--IGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 152 Ds~--~d~~aA~~aG~~~i~v~~~ 173 (362)
.-. +-+..|++.|++++.|+.-
T Consensus 104 tElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 104 TELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp ----HHHHHH-----S-EEEEEE-
T ss_pred cccCHHHHHHHhhcCCCEEEEeee
Confidence 555 7889999999999999763
No 264
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=39.29 E-value=3.5e+02 Score=25.83 Aligned_cols=96 Identities=8% Similarity=0.123 Sum_probs=64.0
Q ss_pred CCCCCchHHHHHHHHHHC---CCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEe-CCCCC--CCCCCHHHHHHHHHHcC
Q 017995 68 KVKALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEVR--TGKPSPDIFLEAAKRLN 141 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~---g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~-~~d~~--~gKp~p~~~~~~~~~~~ 141 (362)
+-.++|+..++++..+.. |+.+.++++.+-...++ + ..+|. -.|-- ++-.+ .|=.+|+.+....+...
T Consensus 176 ~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~-l-~~~g~----~avmPl~~pIGsg~gv~~p~~i~~~~e~~~ 249 (326)
T PRK11840 176 AKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKR-L-EDAGA----VAVMPLGAPIGSGLGIQNPYTIRLIVEGAT 249 (326)
T ss_pred CCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-H-HhcCC----EEEeeccccccCCCCCCCHHHHHHHHHcCC
Confidence 456889999999988887 99995555555554554 4 33443 22222 22222 22338899998888732
Q ss_pred CCCCcEEEEec---CHhhHHHHHHcCCEEEEEcCC
Q 017995 142 MEPSSSLVIED---SVIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 142 ~~p~~~l~igD---s~~d~~aA~~aG~~~i~v~~~ 173 (362)
=-+++|- ++.|+..|.+.|+.-+.+.+.
T Consensus 250 ----vpVivdAGIg~~sda~~AmelGadgVL~nSa 280 (326)
T PRK11840 250 ----VPVLVDAGVGTASDAAVAMELGCDGVLMNTA 280 (326)
T ss_pred ----CcEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 3355653 448999999999999999874
No 265
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=39.16 E-value=4.1e+02 Score=26.58 Aligned_cols=131 Identities=19% Similarity=0.208 Sum_probs=79.5
Q ss_pred CCCCCchHHHHHHHHHHCCC-cEEEEcCCC-----hHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcC
Q 017995 68 KVKALPGANRLIKHLSCHGV-PMALASNSH-----RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 141 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~-~~~i~S~~~-----~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~ 141 (362)
+.++..++.++++..++.|+ .+-+.||+- .++++ .| +..|+ ..|+-+.|---.++++..+..+-.
T Consensus 120 EPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~-~l-~~ag~----~tvYlsFDG~~e~~~~~~~~eIk~--- 190 (475)
T COG1964 120 EPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVK-KL-REAGV----NTVYLSFDGVTPKTNWKNHWEIKQ--- 190 (475)
T ss_pred CccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHH-HH-HhcCC----cEEEEecCCCCCCchhhHhhhhHH---
Confidence 46678899999999999999 566778753 44444 34 34454 577777777667887776444322
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCE-EEEEcCCCC--ccccccchhHhhcccc-cccccccCCCCCCccccCCCCCCcee
Q 017995 142 MEPSSSLVIEDSVIGVVAGKAAGME-VVAVPSLPK--QTHRYTAADEVINSLL-DLRPEKWGLPPFQDWIEGTLPSEPWY 217 (362)
Q Consensus 142 ~~p~~~l~igDs~~d~~aA~~aG~~-~i~v~~~~~--~~~~~ssa~~vi~~l~-el~~~~~~l~~~~~~~a~~lLgrp~~ 217 (362)
-++.++++|.. ++.|++... ++... + .+|+-.. ..+. .+...-.|++
T Consensus 191 --------------alen~r~~g~~svVLVptl~rgvNd~~l-G--~iirfa~~n~dv------------VrgVnfQPVs 241 (475)
T COG1964 191 --------------ALENCRKAGLPSVVLVPTLIRGVNDHEL-G--AIIRFALNNIDV------------VRGVNFQPVS 241 (475)
T ss_pred --------------HHHHHHhcCCCcEEEEeehhcccChHHH-H--HHHHHHHhcccc------------ccccceEEEE
Confidence 23558899987 778887422 11111 1 2333222 2211 3444567999
Q ss_pred EeeeeeeccCCCccccCccc
Q 017995 218 IGGPVVKGLGRGSKVLGIPT 237 (362)
Q Consensus 218 i~g~v~~G~~~g~~~lg~pT 237 (362)
+.|++..-...-.| |-.|-
T Consensus 242 ltGr~~~~~r~~~R-ITIPd 260 (475)
T COG1964 242 LTGRMPQKERERFR-ITIPD 260 (475)
T ss_pred EecccchhhhhheE-eechh
Confidence 99998865443222 44444
No 266
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.15 E-value=2.9e+02 Score=24.89 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHCCCcEEEEcCC--ChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHc-CCCCCcEEE
Q 017995 73 PGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPSSSLV 149 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~--~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~-~~~p~~~l~ 149 (362)
....++++.++++|++..++-+. +.+.++..+ +.. +. .++.+-+-++|..-+.......+++ ...++..+.
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~-~~~---~~--~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~ 189 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS-KLS---PL--FIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLV 189 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-HhC---CC--EEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEE
Confidence 57788999999999998877665 345555555 433 11 2222322222322222222222222 223334477
Q ss_pred EecCH---hhHHHHHHcCCEEEEEcC
Q 017995 150 IEDSV---IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 150 igDs~---~d~~aA~~aG~~~i~v~~ 172 (362)
+|=.. .+++.+.++|...+++.+
T Consensus 190 v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 190 VGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred EeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 76544 677777899999888865
No 267
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=37.96 E-value=57 Score=34.33 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=53.6
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 148 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l 148 (362)
-++-.+|+..|+.|++.|+++.++|+..-+.+.-+- +..+|...-+.|.+-.++.. ..+.. .-+..+...++.|+
T Consensus 657 DkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciA-kSs~L~sR~q~ihv~~~v~s---r~dah-~eL~~lR~k~~~aL 731 (1051)
T KOG0210|consen 657 DKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIA-KSSRLFSRGQYIHVIRSVTS---RGDAH-NELNNLRRKTDCAL 731 (1051)
T ss_pred HHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeee-hhccceecCceEEEEEecCC---chHHH-HHHHHhhcCCCcEE
Confidence 456678899999999999999999998777544332 44455444455544443431 11222 23455667788999
Q ss_pred EE-ecCHh
Q 017995 149 VI-EDSVI 155 (362)
Q Consensus 149 ~i-gDs~~ 155 (362)
+| |+|..
T Consensus 732 vi~G~Sl~ 739 (1051)
T KOG0210|consen 732 VIDGESLE 739 (1051)
T ss_pred EEcCchHH
Confidence 99 77763
No 268
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=37.92 E-value=66 Score=28.66 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=32.3
Q ss_pred HHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeC
Q 017995 77 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 120 (362)
Q Consensus 77 ~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~ 120 (362)
++++ ++++|++++++|+.+...+...+ ..+++.. .+.+++.
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~-~~l~l~~-~~~~I~~ 62 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRY-AKLNLPS-PDVLIAR 62 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHH-HhCCCCC-CCEEEEC
Confidence 6666 68899999999999999999888 7777753 3556654
No 269
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=37.79 E-value=2.2e+02 Score=26.13 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.2
Q ss_pred HHHHHHcCCEEEEEcCCC
Q 017995 157 VVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 157 ~~aA~~aG~~~i~v~~~~ 174 (362)
+++|++.|+++++|....
T Consensus 216 i~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 216 VKAAEALGINVIRIARPQ 233 (256)
T ss_pred HHHHHHcCCcEEEEeCCC
Confidence 577999999999998743
No 270
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=37.60 E-value=1.2e+02 Score=26.94 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=27.1
Q ss_pred CCCCch-HHHHHHHHHHCCCcEEEEcCC--ChHhHHHHH
Q 017995 69 VKALPG-ANRLIKHLSCHGVPMALASNS--HRATIESKI 104 (362)
Q Consensus 69 ~~~~pg-v~~~L~~L~~~g~~~~i~S~~--~~~~i~~~L 104 (362)
..+.++ +.++++.+++.|+.+++-||. +.+.++.++
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~ 87 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLA 87 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHH
Confidence 445565 689999999999999999998 444444444
No 271
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=37.41 E-value=56 Score=30.04 Aligned_cols=40 Identities=13% Similarity=0.043 Sum_probs=33.5
Q ss_pred CCCCchHHHHHHHHHH-CCCcEEEEcCCChHhHHHHHHhhcC
Q 017995 69 VKALPGANRLIKHLSC-HGVPMALASNSHRATIESKISYQHG 109 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~-~g~~~~i~S~~~~~~i~~~L~~~~g 109 (362)
..+.|.+.+.|+.|.+ .|+.++|+|+.+...+...+ +.++
T Consensus 35 ~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~-~~~~ 75 (266)
T PRK10187 35 VVVPDNILQGLQLLATANDGALALISGRSMVELDALA-KPYR 75 (266)
T ss_pred ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhc-Cccc
Confidence 4566899999999998 79999999999999888777 5444
No 272
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=36.91 E-value=39 Score=30.22 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=31.6
Q ss_pred HHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCC
Q 017995 75 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD 121 (362)
Q Consensus 75 v~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~ 121 (362)
+.++|..|+++ +.++|+|++.-.-+...| ....+...||++++-.
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl-~~~~~~~~fdy~f~en 45 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQL-GGDDVLDNFDYVFPEN 45 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHH-STTTHHHH-SEEEEGG
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHH-cccchHhhCCeeecCC
Confidence 46889999986 999999999988777666 2223345678777643
No 273
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=36.78 E-value=1e+02 Score=25.64 Aligned_cols=43 Identities=9% Similarity=0.015 Sum_probs=30.0
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChH-hHHHHHHhhcCCcCCCcEEEeC
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRA-TIESKISYQHGWNESFSVIVGS 120 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~-~i~~~L~~~~gl~~~f~~iv~~ 120 (362)
..+.+.++++.++++|+++.+-||...+ ..+.++ ..+ |.++.|
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il-~~i------D~l~~g 116 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELV-QHL------DYLKTG 116 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH-HhC------CEEEEC
Confidence 3467899999999999999999986442 223333 333 666655
No 274
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=36.35 E-value=1.5e+02 Score=28.11 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=26.4
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCCh
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHR 97 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~ 97 (362)
+..+.|.+.++++.++++|+.+.|.||+..
T Consensus 140 EPlL~p~l~eli~~~k~~Gi~~~L~TNG~~ 169 (322)
T PRK13762 140 EPTLYPYLPELIEEFHKRGFTTFLVTNGTR 169 (322)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEECCCCC
Confidence 445688999999999999999999999865
No 275
>PLN02887 hydrolase family protein
Probab=35.78 E-value=85 Score=32.54 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCc
Q 017995 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN 111 (362)
Q Consensus 70 ~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~ 111 (362)
.+-+...+.|+.|+++|+.+.++|+.+...+...+ +.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l-~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDIL-KMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHhCcc
Confidence 45678899999999999999999999999888877 777764
No 276
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=35.48 E-value=4.1e+02 Score=26.27 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHhhhcCCCCCchH-HHHHHHHHHCCCcEEEEcCCChH
Q 017995 33 TPLEEAAIIVEDYGL--PCAKHEFVNEVYSMFSDHLCKVKALPGA-NRLIKHLSCHGVPMALASNSHRA 98 (362)
Q Consensus 33 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pgv-~~~L~~L~~~g~~~~i~S~~~~~ 98 (362)
+..+.+.....+.+. ..+.+.+++.+.+.-.+...-+.+..|+ ++.++.|++.+--+.|+|-...-
T Consensus 122 PiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~ 190 (431)
T PRK13352 122 PIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSF 190 (431)
T ss_pred hHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHH
Confidence 355555554433332 3456778887777777777667788884 66899999988888999876543
No 277
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=35.07 E-value=1.6e+02 Score=25.04 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCCcEEEEcCCChHhHHHHH---HhhcCCcCCCc-EEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHH
Q 017995 85 HGVPMALASNSHRATIESKI---SYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG 160 (362)
Q Consensus 85 ~g~~~~i~S~~~~~~i~~~L---~~~~gl~~~f~-~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA 160 (362)
-|.-..++.+.+...+.... .+.+.+...|| .|+..+....+ -..+|.+|.+|++.|+...++...
T Consensus 77 tG~E~~~~v~~~a~~vK~~~i~iEe~hplGRL~DlDV~~~~g~~iS----------R~~lg~~~R~CliC~~~Ak~CaRs 146 (165)
T TIGR03124 77 TGPEAFLVVDAPALELKRLMIKLEESHPLGRLWDIDVLDADGKSLS----------RTDLGLPPRKCLLCEEDAKICARS 146 (165)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHhCCchhhheeheeecCCCCCcC----------HHHcCCCCCeeecCCchHHHHhhc
Confidence 45445566666666666654 34566777777 35543322222 356899999999999988777665
Q ss_pred HHc
Q 017995 161 KAA 163 (362)
Q Consensus 161 ~~a 163 (362)
+++
T Consensus 147 rrH 149 (165)
T TIGR03124 147 RRH 149 (165)
T ss_pred CCC
Confidence 554
No 278
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=34.61 E-value=69 Score=33.75 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=34.6
Q ss_pred CCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcC
Q 017995 71 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 112 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~ 112 (362)
..+...+.|+.|+++|+++.++|+.+...+...+ +.+++..
T Consensus 434 i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~-~~Lgl~~ 474 (694)
T PRK14502 434 SYSTALDALRLLKDKELPLVFCSAKTMGEQDLYR-NELGIKD 474 (694)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCCCC
Confidence 4456788999999999999999999999888777 7777643
No 279
>PRK01060 endonuclease IV; Provisional
Probab=34.15 E-value=2.4e+02 Score=25.66 Aligned_cols=91 Identities=13% Similarity=0.175 Sum_probs=53.7
Q ss_pred CCCCchHHHHHHHHHHCCCcEE-EEcCCChH------------hHHHHHHhhcCCcCCCcEEE-eCCCCCCCCCCHHHHH
Q 017995 69 VKALPGANRLIKHLSCHGVPMA-LASNSHRA------------TIESKISYQHGWNESFSVIV-GSDEVRTGKPSPDIFL 134 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~-i~S~~~~~------------~i~~~L~~~~gl~~~f~~iv-~~~d~~~gKp~p~~~~ 134 (362)
..++.++.+.++.+++.|+.-. +...++.. .+++.+ +..|+.-. ...+ +........|+++...
T Consensus 8 ~~~~~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~-~~~gl~~~-~~~~h~~~~~nl~~~d~~~r~ 85 (281)
T PRK01060 8 VSAAGGLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAAC-EKYGISPE-DILVHAPYLINLGNPNKEILE 85 (281)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHH-HHcCCCCC-ceEEecceEecCCCCCHHHHH
Confidence 3456678899999999999854 33222221 133444 55566310 1122 2222456678887776
Q ss_pred HHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCC
Q 017995 135 EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 135 ~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~ 174 (362)
...+.+. .-++.|++.|++++++..+.
T Consensus 86 ~s~~~~~-------------~~i~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 86 KSRDFLI-------------QEIERCAALGAKLLVFHPGS 112 (281)
T ss_pred HHHHHHH-------------HHHHHHHHcCCCEEEEcCCc
Confidence 6655432 35677999999988886643
No 280
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=33.83 E-value=1.8e+02 Score=27.21 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEEcCCC
Q 017995 131 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 131 ~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v~~~~ 174 (362)
.-+.+++++.|. .++.| |+..|+....=.|..+|+|..+.
T Consensus 228 ~rL~eiA~~~g~---~aylI-d~~~ei~~~w~~~~~~VGvTAGA 267 (294)
T COG0761 228 NRLAEIAKRHGK---PAYLI-DDAEEIDPEWLKGVKTVGVTAGA 267 (294)
T ss_pred HHHHHHHHHhCC---CeEEe-CChHhCCHHHhcCccEEEEecCC
Confidence 344444555554 23333 33445555555566666666554
No 281
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=33.81 E-value=43 Score=23.18 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCcc-----ccCccCCCCcccccCC
Q 017995 323 ETLIAKIHEDRKVAERALDLPL-----YSKYRDDPYLKITSSK 360 (362)
Q Consensus 323 ~~L~~qi~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 360 (362)
++++.||.-|.+..-..|+..- .|-|+.-||+++-|+.
T Consensus 12 ~qviqqisf~Lq~ISsvl~t~iFDPFE~cyyrgGsfwEieSad 54 (64)
T PF03622_consen 12 EQVIQQISFNLQHISSVLNTEIFDPFEVCYYRGGSFWEIESAD 54 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCeeEEEEecCcEEEeeccc
Confidence 5788999999998877776533 5889999999988763
No 282
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=33.64 E-value=4e+02 Score=26.11 Aligned_cols=174 Identities=14% Similarity=0.133 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHhh---hcCCCCCchHHHH
Q 017995 8 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA------KHEFVNEVYSMFSDH---LCKVKALPGANRL 78 (362)
Q Consensus 8 ~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~pgv~~~ 78 (362)
+.-.++.+.|++..+...+.+++..+....-+++...-|-... ...+.-.+....... .....+|-|...+
T Consensus 38 ~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~l 117 (426)
T COG2873 38 DDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNL 117 (426)
T ss_pred CCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHH
Confidence 3345566677777666666677666554444444433222111 111111111111111 1246788888888
Q ss_pred HHHH-HHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 017995 79 IKHL-SCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 157 (362)
Q Consensus 79 L~~L-~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~ 157 (362)
+... ++.|+.+.++...+.+.++..+.++- +.|+ .+....++-+.-.+..+ .
T Consensus 118 f~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nT------kavf-~EtigNP~~~v~Die~i--------------------a 170 (426)
T COG2873 118 FSHTLKRLGIEVRFVDPDDPENFEAAIDENT------KAVF-AETIGNPGLDVLDIEAI--------------------A 170 (426)
T ss_pred HHHHHHhcCcEEEEeCCCCHHHHHHHhCccc------ceEE-EEeccCCCccccCHHHH--------------------H
Confidence 7655 88899888888877665566662222 2333 33333333222222222 2
Q ss_pred HHHHHcCCEEEEEcCCCCc---cccccchhHhhcccccccccccCCCCCCccccCCCCCCceeEeeeeeec
Q 017995 158 VAGKAAGMEVVAVPSLPKQ---THRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKG 225 (362)
Q Consensus 158 ~aA~~aG~~~i~v~~~~~~---~~~~ssa~~vi~~l~el~~~~~~l~~~~~~~a~~lLgrp~~i~g~v~~G 225 (362)
+-|++.|+..++=++.... ......++.++.++.. .+=|+--.|-|.+|-|
T Consensus 171 ~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK-----------------~igGhGt~iGG~iVD~ 224 (426)
T COG2873 171 EIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHSATK-----------------YIGGHGTAIGGVIVDG 224 (426)
T ss_pred HHHHHcCCcEEEecCCCcceecchhhcCCCEEEEeecc-----------------cccCCccccceEEEeC
Confidence 3388888888765443211 1112244555554433 2337777888888865
No 283
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=33.28 E-value=1.8e+02 Score=28.00 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHh
Q 017995 76 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 155 (362)
Q Consensus 76 ~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~ 155 (362)
++.++.|++.|+.+.+..+...+-.-..+ +.. |.++.-... |-..+.+..+..++.+-...| +|=..-
T Consensus 17 ~~~~~~l~~~g~~v~~~~~~~~eel~~~i-~~~------~aviVrs~t---kvtadvl~aa~~~lkvVgrag--~G~dNV 84 (406)
T KOG0068|consen 17 QACIEILKDNGYQVEFKKNLSLEELIEKI-KDC------DALIVRSKT---KVTADVLEAAAGGLKVVGRAG--IGVDNV 84 (406)
T ss_pred hHHHHHHHhcCceEEEeccCCHHHHHHHh-ccC------CEEEEEeCC---eecHHHHHhhcCCeEEEEecc--cCcccc
Confidence 45688899999999888887666333333 322 666654433 445666665433333222222 233446
Q ss_pred hHHHHHHcCCEEEEEcCC
Q 017995 156 GVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 156 d~~aA~~aG~~~i~v~~~ 173 (362)
|+.+|.+.|+-|+-.+..
T Consensus 85 DL~AAte~gi~Vvn~P~~ 102 (406)
T KOG0068|consen 85 DLKAATENGILVVNTPTA 102 (406)
T ss_pred ChhhHHhCCeEEEeCCCC
Confidence 999999999999888774
No 284
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=32.70 E-value=2e+02 Score=29.63 Aligned_cols=87 Identities=9% Similarity=0.011 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecC
Q 017995 74 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 153 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs 153 (362)
++...|..+++.+-++++++-.....--..+.+.+++.= +..... ..-+.+.....++..|++ ++|||.
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i--~~~~~~-----~~~e~~~~v~~lk~~G~~----~vvG~~ 163 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRI--EQRSYV-----TEEDARGQINELKANGIE----AVVGAG 163 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce--EEEEec-----CHHHHHHHHHHHHHCCCC----EEEcCc
Confidence 455556666666667888876543322223334444421 111110 011223333334444543 667997
Q ss_pred HhhHHHHHHcCCEEEEEcC
Q 017995 154 VIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 154 ~~d~~aA~~aG~~~i~v~~ 172 (362)
.. ...|.++|+..+.+..
T Consensus 164 ~~-~~~A~~~g~~g~~~~s 181 (538)
T PRK15424 164 LI-TDLAEEAGMTGIFIYS 181 (538)
T ss_pred hH-HHHHHHhCCceEEecC
Confidence 75 7889999999888864
No 285
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=30.85 E-value=3.6e+02 Score=23.44 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHCCCcEEEE-cCCC-hHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 017995 74 GANRLIKHLSCHGVPMALA-SNSH-RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 151 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~-S~~~-~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~ig 151 (362)
|..=+-..|+.+|+.+.-+ .+.+ +++++... ..+ .+.|..|.-.....+...-+...+++.+..++-.++||
T Consensus 98 G~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~--~~~----~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vG 171 (201)
T cd02070 98 GKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK--EHK----PDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVG 171 (201)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcC----CCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEE
Confidence 4555567788899987533 4433 45444333 222 26666665444444444445555555544335567787
Q ss_pred cCHhhHHHHHHcCCEEEE
Q 017995 152 DSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 152 Ds~~d~~aA~~aG~~~i~ 169 (362)
-....-..+...|.....
T Consensus 172 G~~~~~~~~~~~GaD~~~ 189 (201)
T cd02070 172 GAPVNQEFADEIGADGYA 189 (201)
T ss_pred CCcCCHHHHHHcCCcEEE
Confidence 777555678888876543
No 286
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=30.62 E-value=4.6e+02 Score=24.67 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCH--HHHHHHHHHcC-CCCCcEEE
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSP--DIFLEAAKRLN-MEPSSSLV 149 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p--~~~~~~~~~~~-~~p~~~l~ 149 (362)
+-+.++.+.|...|+.+.++-......++..- +...+ ..|=++++ ....|.- ..+..+.+.+| ++.-++.+
T Consensus 88 Es~~Dta~vls~y~~D~iv~R~~~~~~~~~~a-~~~~v----PVINa~~g-~~~HPtQ~LaDl~Ti~e~~G~l~g~kv~~ 161 (305)
T PRK00856 88 ETLADTIRTLSAMGADAIVIRHPQSGAARLLA-ESSDV----PVINAGDG-SHQHPTQALLDLLTIREEFGRLEGLKVAI 161 (305)
T ss_pred cCHHHHHHHHHhcCCCEEEEeCCChHHHHHHH-HHCCC----CEEECCCC-CCCCcHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 35677888888877788888777777666554 44332 33333332 1234432 22334445555 67789999
Q ss_pred EecCH------hhHHHHHHcCCEEEEEcC
Q 017995 150 IEDSV------IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 150 igDs~------~d~~aA~~aG~~~i~v~~ 172 (362)
|||.. .-+.++...|+.+..+.+
T Consensus 162 vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P 190 (305)
T PRK00856 162 VGDIKHSRVARSNIQALTRLGAEVRLIAP 190 (305)
T ss_pred ECCCCCCcHHHHHHHHHHHcCCEEEEECC
Confidence 99952 457778999999988876
No 287
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=29.84 E-value=5.5e+02 Score=25.30 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=36.6
Q ss_pred hCCCCCHHHHHHHHHHHHHhh---h--------cCCCCCchHHHHHHHHHHCCCcEEEE-cCC
Q 017995 45 YGLPCAKHEFVNEVYSMFSDH---L--------CKVKALPGANRLIKHLSCHGVPMALA-SNS 95 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~pgv~~~L~~L~~~g~~~~i~-S~~ 95 (362)
.+...+++++.+.+.+....+ . ...-.+|.+.++|+.+++.|+++++. ||+
T Consensus 50 ~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG 112 (404)
T TIGR03278 50 NGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSG 112 (404)
T ss_pred cCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 455556777777666644322 1 13557889999999999999999996 884
No 288
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=29.84 E-value=3.1e+02 Score=22.39 Aligned_cols=91 Identities=18% Similarity=0.110 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHCCCcEEEEc-C-CChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 017995 74 GANRLIKHLSCHGVPMALAS-N-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 151 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S-~-~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~ig 151 (362)
|..-+...|+.+|+.+..+- + +.+++++... ..+. +.|..|.-.....+...-+...+++.+.. +-.+++|
T Consensus 19 G~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~--~~~~----d~V~lS~~~~~~~~~~~~~~~~L~~~~~~-~~~i~vG 91 (137)
T PRK02261 19 GNKILDRALTEAGFEVINLGVMTSQEEFIDAAI--ETDA----DAILVSSLYGHGEIDCRGLREKCIEAGLG-DILLYVG 91 (137)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH--HcCC----CEEEEcCccccCHHHHHHHHHHHHhcCCC-CCeEEEE
Confidence 34444566788888776553 2 3355554443 2222 66666654443333444444444444443 3346665
Q ss_pred cCH--------hhHHHHHHcCCEEEEEc
Q 017995 152 DSV--------IGVVAGKAAGMEVVAVP 171 (362)
Q Consensus 152 Ds~--------~d~~aA~~aG~~~i~v~ 171 (362)
-+. .+.+.+++.|+..|.-+
T Consensus 92 G~~~~~~~~~~~~~~~l~~~G~~~vf~~ 119 (137)
T PRK02261 92 GNLVVGKHDFEEVEKKFKEMGFDRVFPP 119 (137)
T ss_pred CCCCCCccChHHHHHHHHHcCCCEEECc
Confidence 553 35567899997665443
No 289
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.74 E-value=4.4e+02 Score=24.07 Aligned_cols=95 Identities=17% Similarity=0.211 Sum_probs=54.7
Q ss_pred CCchHHHHHHHHHHCCCcEE-EEcC-CChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCC--CCHHHH--HHHHHHcCCCC
Q 017995 71 ALPGANRLIKHLSCHGVPMA-LASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGK--PSPDIF--LEAAKRLNMEP 144 (362)
Q Consensus 71 ~~pgv~~~L~~L~~~g~~~~-i~S~-~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gK--p~p~~~--~~~~~~~~~~p 144 (362)
+.....++++.++++|+... +++. ++.+-+..++ +.. +-|-.+++...++-.+ -.++.. ...+++. .
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~-~~~---~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~--~- 197 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIA-EKS---QGFVYLVSRAGVTGARNRAASALNELVKRLKAY--S- 197 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHH-HhC---CCCEEEEECCCCCCCcccCChhHHHHHHHHHhh--c-
Confidence 44678889999999999866 4444 3344555555 332 2245666654343222 122322 2222222 1
Q ss_pred CcEEEEec---CHhhHHHHHHcCCEEEEEcC
Q 017995 145 SSSLVIED---SVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 145 ~~~l~igD---s~~d~~aA~~aG~~~i~v~~ 172 (362)
..-+++|= +..+++.+.++|...++|.+
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 22366764 35688888999999888865
No 290
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=29.51 E-value=5.1e+02 Score=24.79 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH--HHHHHHHcC---CCCCcE
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN---MEPSSS 147 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~--~~~~~~~~~---~~p~~~ 147 (362)
+-+.++.+.|... +...++-......++..- +..++ . |+.+.+ ....|.-.+ +..+.+.+| ++.-.+
T Consensus 88 Esl~Dtarvls~y-~D~iviR~~~~~~~~~~a-~~~~v----P-VINa~~-~~~HPtQaLaDl~Ti~e~~g~~~l~gl~v 159 (334)
T PRK12562 88 ESIKDTARVLGRM-YDGIQYRGHGQEVVETLA-EYAGV----P-VWNGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTL 159 (334)
T ss_pred cCHHHHHHHHHHh-CCEEEEECCchHHHHHHH-HhCCC----C-EEECCC-CCCChHHHHHHHHHHHHHhCCCCcCCcEE
Confidence 4567777777776 566666666666666544 55442 3 444432 234553222 233345664 667789
Q ss_pred EEEecC-----HhhHHHHHHcCCEEEEEcC
Q 017995 148 LVIEDS-----VIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 148 l~igDs-----~~d~~aA~~aG~~~i~v~~ 172 (362)
.+|||. ...+.++...|+.+..+.+
T Consensus 160 a~vGD~~~~v~~S~~~~~~~~G~~v~~~~P 189 (334)
T PRK12562 160 VYAGDARNNMGNSMLEAAALTGLDLRLVAP 189 (334)
T ss_pred EEECCCCCCHHHHHHHHHHHcCCEEEEECC
Confidence 999995 2567778899999988876
No 291
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=29.03 E-value=2.8e+02 Score=25.40 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH--HHHHHH-HcCCCCCcEEEE
Q 017995 74 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAK-RLNMEPSSSLVI 150 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~--~~~~~~-~~~~~p~~~l~i 150 (362)
=|+.++..+...|+++.=++...-..+..++ ..+.-.+ ...|+..||..|...++.. +..+++ -+.-.|+++++.
T Consensus 68 lVkall~~y~~~GLRlIev~k~~L~~l~~l~-~~l~~~~-~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~Nvliy 145 (249)
T PF05673_consen 68 LVKALLNEYADQGLRLIEVSKEDLGDLPELL-DLLRDRP-YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIY 145 (249)
T ss_pred HHHHHHHHHhhcCceEEEECHHHhccHHHHH-HHHhcCC-CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEE
Confidence 4678889999999888877776655555555 4443222 3789999999887665433 222222 122456676655
Q ss_pred ec
Q 017995 151 ED 152 (362)
Q Consensus 151 gD 152 (362)
--
T Consensus 146 AT 147 (249)
T PF05673_consen 146 AT 147 (249)
T ss_pred Ee
Confidence 43
No 292
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=29.02 E-value=4.5e+02 Score=23.99 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=51.0
Q ss_pred HCCCcEEEEcCCCh---HhHHHHHHhhc-CCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH--hhH
Q 017995 84 CHGVPMALASNSHR---ATIESKISYQH-GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV--IGV 157 (362)
Q Consensus 84 ~~g~~~~i~S~~~~---~~i~~~L~~~~-gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~--~d~ 157 (362)
+.++.+-+++++.. +.++....+.+ .+...|- |+.|.+- .-|.|.--++.++..|+ .|++|+|.+ .+.
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~-i~isPN~--a~PGP~~ARE~l~~~~i---P~IvI~D~p~~K~~ 102 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFV-IVISPNP--AAPGPKKAREILKAAGI---PCIVIGDAPGKKVK 102 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEE-EEECCCC--CCCCchHHHHHHHhcCC---CEEEEcCCCccchH
Confidence 34788888877532 22333331221 3444333 3444333 46677777888777776 599999999 455
Q ss_pred HHHHHcCCEEEEEcC
Q 017995 158 VAGKAAGMEVVAVPS 172 (362)
Q Consensus 158 ~aA~~aG~~~i~v~~ 172 (362)
.+-.+.|+.-+.+..
T Consensus 103 d~l~~~g~GYIivk~ 117 (277)
T PRK00994 103 DAMEEQGLGYIIVKA 117 (277)
T ss_pred HHHHhcCCcEEEEec
Confidence 677778888777754
No 293
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=28.78 E-value=45 Score=35.75 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=27.1
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChH
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRA 98 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~ 98 (362)
.+++.|+++..++.|.+.+.++.++|+...-
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnpL 703 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDNPL 703 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCCcc
Confidence 4789999999999999999999999986543
No 294
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.43 E-value=52 Score=28.12 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCChHh-HHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEec
Q 017995 74 GANRLIKHLSCHGVPMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 152 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S~~~~~~-i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igD 152 (362)
++...|..++..+-++++++....-. +. .+.+.+|+ +...... .+++-+...++++.-+. --++||+
T Consensus 65 Dil~al~~a~~~~~~Iavv~~~~~~~~~~-~~~~ll~~----~i~~~~~------~~~~e~~~~i~~~~~~G-~~viVGg 132 (176)
T PF06506_consen 65 DILRALAKAKKYGPKIAVVGYPNIIPGLE-SIEELLGV----DIKIYPY------DSEEEIEAAIKQAKAEG-VDVIVGG 132 (176)
T ss_dssp HHHHHHHHCCCCTSEEEEEEESS-SCCHH-HHHHHHT-----EEEEEEE------SSHHHHHHHHHHHHHTT---EEEES
T ss_pred HHHHHHHHHHhcCCcEEEEecccccHHHH-HHHHHhCC----ceEEEEE------CCHHHHHHHHHHHHHcC-CcEEECC
Confidence 44444555555666788887544332 22 22244454 2111111 12455555555543222 2366788
Q ss_pred CHhhHHHHHHcCCEEEEEcC
Q 017995 153 SVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 153 s~~d~~aA~~aG~~~i~v~~ 172 (362)
... .+.|++.|++++.+..
T Consensus 133 ~~~-~~~A~~~gl~~v~i~s 151 (176)
T PF06506_consen 133 GVV-CRLARKLGLPGVLIES 151 (176)
T ss_dssp HHH-HHHHHHTTSEEEESS-
T ss_pred HHH-HHHHHHcCCcEEEEEe
Confidence 764 7889999999998866
No 295
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=28.42 E-value=5.1e+02 Score=24.45 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH--HHHHHHHcC---CCCCcEE
Q 017995 74 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN---MEPSSSL 148 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~--~~~~~~~~~---~~p~~~l 148 (362)
.+.+..+.|.. .+...++-......++... +...+ ..|=++++ ...|.-.+ +..+.+.+| ++.-.+.
T Consensus 86 ~~~dt~~vls~-~~D~iv~R~~~~~~~~~~a-~~~~v----PVINag~~--~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va 157 (311)
T PRK14804 86 DIDLEARYLSR-NVSVIMARLKKHEDLLVMK-NGSQV----PVINGCDN--MFHPCQSLADIMTIALDSPEIPLNQKQLT 157 (311)
T ss_pred cHHHHHHHHHh-cCCEEEEeCCChHHHHHHH-HHCCC----CEEECCCC--CCChHHHHHHHHHHHHHhCCCCCCCCEEE
Confidence 45566677776 5677777666666555433 44332 33333444 24554222 333445566 6778899
Q ss_pred EEecC----HhhHHHHHHcCCEEEEEcCC
Q 017995 149 VIEDS----VIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 149 ~igDs----~~d~~aA~~aG~~~i~v~~~ 173 (362)
+|||. ...+.++...|+.+..+.+.
T Consensus 158 ~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~ 186 (311)
T PRK14804 158 YIGVHNNVVNSLIGITAALGIHLTLVTPI 186 (311)
T ss_pred EECCCCcHHHHHHHHHHHcCCEEEEECCC
Confidence 99994 25677788999999888763
No 296
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=28.41 E-value=3.2e+02 Score=22.05 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHcCC-CCCcEEEE-ecCH--hhHHHHHHcCCEEEEEcCC
Q 017995 129 SPDIFLEAAKRLNM-EPSSSLVI-EDSV--IGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 129 ~p~~~~~~~~~~~~-~p~~~l~i-gDs~--~d~~aA~~aG~~~i~v~~~ 173 (362)
+..+...+++...- .++.++.| ||+. .-++.+++.|.+++++...
T Consensus 84 D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 84 DVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred cHHHHHHHHHHhhhcCCCEEEEEECCccHHHHHHHHHHcCCEEEEEccC
Confidence 34444444433222 34454444 6665 5667789999999998774
No 297
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=27.98 E-value=5.1e+02 Score=24.33 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH--HHHHHHHcC-CCCCcEEE
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN-MEPSSSLV 149 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~--~~~~~~~~~-~~p~~~l~ 149 (362)
+-+.++.+.|... +...++-......++..- +..++ . |+.+.+ ....|.-.+ +..+.+.+| ++.-.+.+
T Consensus 81 Esl~Dt~~vls~y-~D~iviR~~~~~~~~~~a-~~~~v----P-VINa~~-~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~ 152 (302)
T PRK14805 81 ESVADFAANLSCW-ADAIVARVFSHSTIEQLA-EHGSV----P-VINALC-DLYHPCQALADFLTLAEQFGDVSKVKLAY 152 (302)
T ss_pred cCHHHHHHHHHHh-CCEEEEeCCChhHHHHHH-HhCCC----C-EEECCC-CCCChHHHHHHHHHHHHHhCCcCCcEEEE
Confidence 4566777777776 677777666666666544 44432 3 444433 234553222 223334555 66678999
Q ss_pred EecCH----hhHHHHHHcCCEEEEEcC
Q 017995 150 IEDSV----IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 150 igDs~----~d~~aA~~aG~~~i~v~~ 172 (362)
|||.. ..+.++...|+.+..+.+
T Consensus 153 vGD~~~v~~S~~~~~~~~g~~v~~~~P 179 (302)
T PRK14805 153 VGDGNNVTHSLMYGAAILGATMTVICP 179 (302)
T ss_pred EcCCCccHHHHHHHHHHcCCEEEEECC
Confidence 99943 567778899999988876
No 298
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=27.95 E-value=3.6e+02 Score=23.83 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=41.6
Q ss_pred HHHHHHHHHCCCcEEEEcCCChHhHH-HHHHhh-cCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCC--CcEEEEe
Q 017995 76 NRLIKHLSCHGVPMALASNSHRATIE-SKISYQ-HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP--SSSLVIE 151 (362)
Q Consensus 76 ~~~L~~L~~~g~~~~i~S~~~~~~i~-~~L~~~-~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p--~~~l~ig 151 (362)
..+++.|+++ |+++++++.-...-+ ..+ .+ .|. ..-.+-+|..+ .-++.+...+++++...- -+.++|+
T Consensus 31 e~~~~~L~~~-~~~aVI~~Di~t~~Da~~l-~~~~g~--~i~~v~TG~~C---H~da~m~~~ai~~l~~~~~~~Dll~iE 103 (202)
T COG0378 31 EKTLRALKDE-YKIAVITGDIYTKEDADRL-RKLPGE--PIIGVETGKGC---HLDASMNLEAIEELVLDFPDLDLLFIE 103 (202)
T ss_pred HHHHHHHHhh-CCeEEEeceeechhhHHHH-HhCCCC--eeEEeccCCcc---CCcHHHHHHHHHHHhhcCCcCCEEEEe
Confidence 4567888887 999999986544222 234 33 332 22334445444 256788888888776432 3566664
Q ss_pred c
Q 017995 152 D 152 (362)
Q Consensus 152 D 152 (362)
.
T Consensus 104 s 104 (202)
T COG0378 104 S 104 (202)
T ss_pred c
Confidence 3
No 299
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=27.92 E-value=4e+02 Score=25.95 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=27.2
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEE-cCCChHhHHHHH
Q 017995 69 VKALPGANRLIKHLSCHGVPMALA-SNSHRATIESKI 104 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~-S~~~~~~i~~~L 104 (362)
.+-.||..+++++|.++|+.+.+- |+...+.+.+.+
T Consensus 173 APE~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~ 209 (380)
T TIGR00221 173 APEEDQHFELIRHLKDAGIIVSAGHTNATYELAKAAF 209 (380)
T ss_pred CCCCCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHH
Confidence 334679999999999999988877 555555555555
No 300
>PLN02389 biotin synthase
Probab=27.67 E-value=2.2e+02 Score=27.79 Aligned_cols=38 Identities=8% Similarity=0.219 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHHCCCcEEEEcCC--ChHhHHHHHHhhcCCcC
Q 017995 72 LPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNE 112 (362)
Q Consensus 72 ~pgv~~~L~~L~~~g~~~~i~S~~--~~~~i~~~L~~~~gl~~ 112 (362)
++.+.++++.+++.++.+. +|++ .++.+ ..| +..|++.
T Consensus 152 ~e~i~eiir~ik~~~l~i~-~s~G~l~~E~l-~~L-keAGld~ 191 (379)
T PLN02389 152 FNQILEYVKEIRGMGMEVC-CTLGMLEKEQA-AQL-KEAGLTA 191 (379)
T ss_pred HHHHHHHHHHHhcCCcEEE-ECCCCCCHHHH-HHH-HHcCCCE
Confidence 4577778888887766543 3433 22322 244 5567754
No 301
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=27.51 E-value=4.1e+02 Score=29.76 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=56.6
Q ss_pred HHHHHHHHHCCCc---EEEEcCCChHhHHHHHHhhcCCcCCCcEEEe-CCCCCCCCCCHHHHHHHHHH---cC-CCCCcE
Q 017995 76 NRLIKHLSCHGVP---MALASNSHRATIESKISYQHGWNESFSVIVG-SDEVRTGKPSPDIFLEAAKR---LN-MEPSSS 147 (362)
Q Consensus 76 ~~~L~~L~~~g~~---~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~-~~d~~~gKp~p~~~~~~~~~---~~-~~p~~~ 147 (362)
.++|+.+|+.|+. ++-+.+.++.-++..- +.+++.+.++.|=+ +.+|. ...|-.|...-.. .. .+...+
T Consensus 481 ~~~~~~~k~~g~~d~~~a~~~~~~~~~~~~~~-~~~~~~~~~k~vd~~a~e~~--~~~~~~y~~~~~~~~~~~~~~~~kv 557 (1050)
T TIGR01369 481 PELLRRAKKLGFSDAQIARLIGVTEAEVRKLR-KELGIMPVYKRVDTCAAEFE--AQTPYLYSTYEGERDDVPFTDKKKV 557 (1050)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHH-HHCCCeeEEEeecCCCCccc--CCCCeeEecCCCCCCcccCCCCceE
Confidence 4788999999986 3334556666677655 77888776665532 22332 1111222211100 00 133578
Q ss_pred EEEecCHh--------------hHHHHHHcCCEEEEEcC
Q 017995 148 LVIEDSVI--------------GVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 148 l~igDs~~--------------d~~aA~~aG~~~i~v~~ 172 (362)
+++|-+++ -++++++.|++++.+..
T Consensus 558 lvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~ 596 (1050)
T TIGR01369 558 LVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINY 596 (1050)
T ss_pred EEecCcccccccccccchHHHHHHHHHHhCCCEEEEEec
Confidence 88887764 26778999999999966
No 302
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=26.68 E-value=2.2e+02 Score=26.95 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=26.0
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCCh
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHR 97 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~ 97 (362)
+.-+.|.+.++++.++++|..+.+.||..-
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 456778999999999999999999999853
No 303
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=26.68 E-value=85 Score=29.36 Aligned_cols=106 Identities=18% Similarity=0.220 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCEEEEE-cC-CCCc---cccccchhHhhcccccccccccC
Q 017995 125 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV-PS-LPKQ---THRYTAADEVINSLLDLRPEKWG 199 (362)
Q Consensus 125 ~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~aG~~~i~v-~~-~~~~---~~~~ssa~~vi~~l~el~~~~~~ 199 (362)
||.|+|+.|+.+++- ++.|.+.|++++.+ ++ +... .+.--.+..+.+++.++.-.
T Consensus 128 FGm~~PeGyRKAlRl-----------------m~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~L--- 187 (317)
T COG0825 128 FGMPRPEGYRKALRL-----------------MKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARL--- 187 (317)
T ss_pred CCCCCchHHHHHHHH-----------------HHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCC---
Confidence 789999999999874 57799999998754 44 2221 12222346788888874211
Q ss_pred CCCCCccccCCCCCCceeEeeeeeeccCCCccccCccccccCCCCccccCCCCCCeEEEEEEEEccCeEEEEEEEeCCCC
Q 017995 200 LPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNP 279 (362)
Q Consensus 200 l~~~~~~~a~~lLgrp~~i~g~v~~G~~~g~~~lg~pTaNi~~~~~~~~lp~~~~GvY~~~~~~~~~~~~~~~~~iG~~p 279 (362)
+.-+-.+|+---+-|. .|++-.+|-. ..+- +.+|.+ +.. .|.++|=|+-
T Consensus 188 ---------------kvPiI~iVIGEGgSGG-ALAi~vad~V-----~mle---~s~ySV---isP----EG~AsILWkD 236 (317)
T COG0825 188 ---------------KVPIISIVIGEGGSGG-ALAIGVADRV-----LMLE---NSTYSV---ISP----EGCASILWKD 236 (317)
T ss_pred ---------------CCCEEEEEecCCCchh-hHHhhHHHHH-----HHHH---hceeee---cCh----hhhhhhhhcC
Confidence 2223345552223454 4888888743 2332 688865 322 4667777775
Q ss_pred cc
Q 017995 280 YF 281 (362)
Q Consensus 280 t~ 281 (362)
+-
T Consensus 237 ~~ 238 (317)
T COG0825 237 AS 238 (317)
T ss_pred hh
Confidence 54
No 304
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=26.67 E-value=4.4e+02 Score=26.75 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=29.7
Q ss_pred HHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeC
Q 017995 78 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 120 (362)
Q Consensus 78 ~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~ 120 (362)
.++..++.| +.+++|.+++.+++..+.+.+|. |.|++.
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~----D~VvGT 138 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRA----DEVIGS 138 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCC----ceEEee
Confidence 566677788 99999999999999999444776 666543
No 305
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=26.62 E-value=1.2e+02 Score=21.59 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHH
Q 017995 6 FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIV 42 (362)
Q Consensus 6 ~~~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~ 42 (362)
+.+|..++.+++|..++.+++...+|.+..+.-..+.
T Consensus 6 i~~a~~~L~~~lgr~Pt~eEiA~~lgis~~~v~~~l~ 42 (78)
T PF04539_consen 6 IERARRELEQELGREPTDEEIAEELGISVEEVRELLQ 42 (78)
T ss_dssp HHHHHHHHHHHHSS--BHHHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHcccHHHHHHHHH
Confidence 5678888888999999999999999998877655443
No 306
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=26.41 E-value=89 Score=26.14 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=35.0
Q ss_pred CchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC
Q 017995 72 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 124 (362)
Q Consensus 72 ~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~ 124 (362)
+.++.++=+.|++.|+++.+..+.+.+.+..++ +..++ +.|++..++.
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~-~~~~~----~~V~~~~~~~ 99 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDPEEVLPELA-KEYGA----TAVYFNEEYT 99 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHH-HHHTE----SEEEEE---S
T ss_pred HHHHHHHHHHHHhcCcceEEEecchHHHHHHHH-HhcCc----CeeEeccccC
Confidence 345567778889999999999999988887776 66664 7888877665
No 307
>PF14819 QueF_N: Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term; PDB: 3UXV_C 3RJB_A 3BP1_D 3RZP_B 3RJ4_A 3UXJ_C 3S19_D 3RZQ_B.
Probab=26.06 E-value=68 Score=25.31 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q 017995 316 EANFPSLETLIAKIHEDRKVAE 337 (362)
Q Consensus 316 e~~f~~~~~L~~qi~~d~~~~~ 337 (362)
+.+|+|.+++.+.|.+|...|-
T Consensus 81 qtrf~s~~~v~~~i~~DLS~~~ 102 (110)
T PF14819_consen 81 QTRFESWEAVQATIERDLSAAA 102 (110)
T ss_dssp T-B-S-HHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHc
Confidence 3579999999999999998763
No 308
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=25.98 E-value=2e+02 Score=23.99 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.1
Q ss_pred cCCCCCchHHHHHHHHHHCCCcEEEEcCC
Q 017995 67 CKVKALPGANRLIKHLSCHGVPMALASNS 95 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~g~~~~i~S~~ 95 (362)
+.+...|+++++++.|.+. |.+.|+|..
T Consensus 65 RnL~V~p~aq~v~keLt~~-y~vYivtaa 92 (180)
T COG4502 65 RNLGVQPFAQTVLKELTSI-YNVYIVTAA 92 (180)
T ss_pred hhcCccccHHHHHHHHHhh-heEEEEEec
Confidence 5688999999999999987 899999876
No 309
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=25.89 E-value=2.6e+02 Score=20.29 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=27.5
Q ss_pred cCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcC
Q 017995 93 SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 141 (362)
Q Consensus 93 S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~ 141 (362)
.+.+-+++...+ +++|+ +.|-++ ..|.....+..+++.+.
T Consensus 18 ~s~DGe~ia~~~-~~~G~----~~iRGS----s~rgg~~Alr~~~~~lk 57 (74)
T PF04028_consen 18 RSRDGELIARVL-ERFGF----RTIRGS----SSRGGARALREMLRALK 57 (74)
T ss_pred cCcCHHHHHHHH-HHcCC----CeEEeC----CCCcHHHHHHHHHHHHH
Confidence 345567777777 88887 777777 34666777887766544
No 310
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=25.80 E-value=5.3e+02 Score=24.52 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=25.3
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSH 96 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~ 96 (362)
+.-+.|++.++++.+++.|+.+.+.||+.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 45567899999999999999999999974
No 311
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=25.63 E-value=4.9e+02 Score=23.33 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=60.2
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcC--CChHhHHHHHHhhcCCcCCCcEEEe-CCCCCCC--CCCHHHHHHHHHHcCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASN--SHRATIESKISYQHGWNESFSVIVG-SDEVRTG--KPSPDIFLEAAKRLNM 142 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~--~~~~~i~~~L~~~~gl~~~f~~iv~-~~d~~~g--Kp~p~~~~~~~~~~~~ 142 (362)
+.+..+...++|+.+|+.|.+-+++=| ++-+.++.+| ..+ |.|.. +-+-++| |=-|+.+.++.+--..
T Consensus 91 H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l-~~v------D~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~ 163 (220)
T COG0036 91 HAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVL-DDV------DLVLLMSVNPGFGGQKFIPEVLEKIRELRAM 163 (220)
T ss_pred EeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHH-hhC------CEEEEEeECCCCcccccCHHHHHHHHHHHHH
Confidence 355778999999999999999988866 4566677667 555 44332 2223333 4456666655432222
Q ss_pred CC---CcEEEEecCH--hhHHHHHHcCCEEEEEcC
Q 017995 143 EP---SSSLVIEDSV--IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 143 ~p---~~~l~igDs~--~d~~aA~~aG~~~i~v~~ 172 (362)
-. +-.+-|.-+. .-+..+.++|..+++..+
T Consensus 164 ~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 164 IDERLDILIEVDGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred hcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence 22 2234444444 344557788999988866
No 312
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=25.02 E-value=73 Score=20.74 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCcEEEEcCCChHhHHHHH
Q 017995 76 NRLIKHLSCHGVPMALASNSHRATIESKI 104 (362)
Q Consensus 76 ~~~L~~L~~~g~~~~i~S~~~~~~i~~~L 104 (362)
.++.+.|++.|++.+-+|.+.+...++.|
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL 37 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKL 37 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHH
Confidence 46788999999999999999998888877
No 313
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.59 E-value=4.5e+02 Score=22.73 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHCCCcEEEEcCCC
Q 017995 74 GANRLIKHLSCHGVPMALASNSH 96 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S~~~ 96 (362)
.+.+.++.|++.|+++++---+.
T Consensus 134 ~~~~~i~~l~~~G~~ialddfg~ 156 (241)
T smart00052 134 SAVATLQRLRELGVRIALDDFGT 156 (241)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCC
Confidence 34488999999999998865443
No 314
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=24.29 E-value=4.7e+02 Score=25.13 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=25.4
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCC
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSH 96 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~ 96 (362)
+.-+.|++.++++.+++.|+.+.+.||..
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 45567899999999999999999999974
No 315
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=24.23 E-value=6.4e+02 Score=24.15 Aligned_cols=93 Identities=14% Similarity=0.189 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH--HHHHHHHcC----CCCCc
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN----MEPSS 146 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~--~~~~~~~~~----~~p~~ 146 (362)
+-+.++.+.|... ....++-......++..- +..++ . |+.+.+ ....|.-.+ +..+.+.+| ++.-.
T Consensus 85 Esl~Dtarvls~y-~D~iviR~~~~~~~~~~a-~~~~v----P-VINa~~-~~~HPtQaLaDl~Ti~e~~g~g~~l~glk 156 (338)
T PRK02255 85 ESLEDTARVLSRL-VDIIMARVDRHQTVVELA-KYATV----P-VINGMS-DYNHPTQELGDLFTMIEHLPEGKKLEDCK 156 (338)
T ss_pred cCHHHHHHHHHHh-CcEEEEecCChHHHHHHH-HhCCC----C-EEECCC-CCCChHHHHHHHHHHHHHhCCCCCCCCCE
Confidence 4566777777765 555555555555555433 44432 3 555543 234554222 223345663 66778
Q ss_pred EEEEecC----HhhHHHHHHcCCEEEEEcCC
Q 017995 147 SLVIEDS----VIGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 147 ~l~igDs----~~d~~aA~~aG~~~i~v~~~ 173 (362)
+.+|||. ...+.++...|+.+..+.+.
T Consensus 157 v~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~ 187 (338)
T PRK02255 157 VVFVGDATQVCVSLMFIATKMGMDFVHFGPK 187 (338)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEECCC
Confidence 9999993 25677788899999888763
No 316
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=23.89 E-value=4.4e+02 Score=23.73 Aligned_cols=93 Identities=12% Similarity=0.195 Sum_probs=54.2
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEE------cCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q 017995 69 VKALPGANRLIKHLSCHGVPMALA------SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 142 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~------S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~ 142 (362)
.++.+...++.+.|++.|+....+ ...........+ .. +. .||+|+..+ +...+.+...+...+.
T Consensus 9 TRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l-~~--l~-~~d~iifTS-----~naV~~~~~~l~~~~~ 79 (255)
T PRK05752 9 TRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALL-LE--LD-RYCAVIVVS-----KPAARLGLELLDRYWP 79 (255)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHH-hc--CC-CCCEEEEEC-----HHHHHHHHHHHHhhCC
Confidence 456678889999999999986544 222222233344 32 33 347766432 2223555555555554
Q ss_pred CC--CcEEEEecCHhhHHHHHHcCCEEEEEcC
Q 017995 143 EP--SSSLVIEDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 143 ~p--~~~l~igDs~~d~~aA~~aG~~~i~v~~ 172 (362)
++ .++..||+...... ++.|+.+..++.
T Consensus 80 ~~~~~~~~aVG~~Ta~al--~~~G~~~~~~p~ 109 (255)
T PRK05752 80 QPPQQPWFSVGAATAAIL--QDYGLDVSYPEQ 109 (255)
T ss_pred CCcCCEEEEECHHHHHHH--HHcCCCcccCCC
Confidence 33 47888998885443 457887655443
No 317
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=23.85 E-value=5.5e+02 Score=26.31 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=47.3
Q ss_pred hHHHHH-HHHHHCCCcEEEEcCCChH-h---HHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHH---HHHHHcCCCCC
Q 017995 74 GANRLI-KHLSCHGVPMALASNSHRA-T---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFL---EAAKRLNMEPS 145 (362)
Q Consensus 74 gv~~~L-~~L~~~g~~~~i~S~~~~~-~---i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~---~~~~~~~~~p~ 145 (362)
|+.+-| +.+++.|.+..+++..... + +...| +..|+. .++.++...+. .|+ .+... ..+...+.+..
T Consensus 196 g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L-~~~g~~-v~~~v~p~~E~--~ks-l~~v~~~~~~l~~~~~~r~ 270 (542)
T PRK14021 196 GAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLL-RQGGYE-VSDIVIPDAEA--GKT-IEVANGIWQRLGNEGFTRS 270 (542)
T ss_pred ChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHH-HhCCCc-eEEEEeCCCcc--cCC-HHHHHHHHHHHHhcCCCCC
Confidence 554433 4455556677776655432 1 12223 333442 22333222222 122 23333 33344555444
Q ss_pred c-EEEEec-CHhhHHHHHH----cCCEEEEEcC
Q 017995 146 S-SLVIED-SVIGVVAGKA----AGMEVVAVPS 172 (362)
Q Consensus 146 ~-~l~igD-s~~d~~aA~~----aG~~~i~v~~ 172 (362)
+ ++.||- +..|+..+.+ .|+++|.|++
T Consensus 271 D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 271 DAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4 455765 5588887655 6999999988
No 318
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=23.73 E-value=3.9e+02 Score=25.68 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHCCCcEEEEc-CCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE-
Q 017995 73 PGANRLIKHLSCHGVPMALAS-NSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI- 150 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S-~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~i- 150 (362)
|=+.-.|+.|++.|+.-.++. +...+.++..+.+...+...+.+++-.. .......+..+...++. +.++++
T Consensus 33 Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~~----~lGTag~l~~a~~~l~~--~~f~v~~ 106 (358)
T COG1208 33 PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKE----PLGTAGALKNALDLLGG--DDFLVLN 106 (358)
T ss_pred cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEecCC----cCccHHHHHHHHHhcCC--CcEEEEE
Confidence 566778999999999876665 5566666666633222222223333333 33367888888888776 666666
Q ss_pred ecCHhh
Q 017995 151 EDSVIG 156 (362)
Q Consensus 151 gDs~~d 156 (362)
||..+|
T Consensus 107 GDv~~~ 112 (358)
T COG1208 107 GDVLTD 112 (358)
T ss_pred CCeeec
Confidence 999977
No 319
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=23.50 E-value=92 Score=21.63 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=22.3
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHCCC
Q 017995 41 IVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGV 87 (362)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~ 87 (362)
+......+.+.+++.+.+.+.|.... -....++.++|..|.++|+
T Consensus 22 Iw~~~~g~~t~~ei~~~l~~~y~~~~--~~~~~dv~~fl~~L~~~gl 66 (68)
T PF05402_consen 22 IWELLDGPRTVEEIVDALAEEYDVDP--EEAEEDVEEFLEQLREKGL 66 (68)
T ss_dssp HHHH--SSS-HHHHHHHHHHHTT--H--HHHHHHHHHHHHHHHHTT-
T ss_pred HHHHccCCCCHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHCcC
Confidence 33333333455555555554442221 1235577888888888875
No 320
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.97 E-value=3.8e+02 Score=21.10 Aligned_cols=89 Identities=16% Similarity=0.043 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHCCCcEEEEcC--CChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 017995 74 GANRLIKHLSCHGVPMALASN--SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 151 (362)
Q Consensus 74 gv~~~L~~L~~~g~~~~i~S~--~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~ig 151 (362)
|..-+-..|+.+|+.+...-. +.+++++... + .+- +.|+.|.......+...-+...+++.+.+ .-.+++|
T Consensus 15 G~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~-~-~~~----d~V~iS~~~~~~~~~~~~~~~~L~~~~~~-~i~i~~G 87 (122)
T cd02071 15 GAKVIARALRDAGFEVIYTGLRQTPEEIVEAAI-Q-EDV----DVIGLSSLSGGHMTLFPEVIELLRELGAG-DILVVGG 87 (122)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-H-cCC----CEEEEcccchhhHHHHHHHHHHHHhcCCC-CCEEEEE
Confidence 444455678889987765532 2344444333 2 222 56655543333333334444444444443 4445666
Q ss_pred c-CH-hhHHHHHHcCCEEEE
Q 017995 152 D-SV-IGVVAGKAAGMEVVA 169 (362)
Q Consensus 152 D-s~-~d~~aA~~aG~~~i~ 169 (362)
- .+ .+++..+++|+.-+.
T Consensus 88 G~~~~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIF 107 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEE
Confidence 3 33 457778899986544
No 321
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=22.92 E-value=1.8e+02 Score=21.39 Aligned_cols=48 Identities=13% Similarity=0.018 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHCCC
Q 017995 37 EAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGV 87 (362)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~~~g~ 87 (362)
....+......+.+.+++...+.+.|.. . -...+++..+|..|+++|+
T Consensus 32 ~g~~Iw~lldg~~tv~eI~~~L~~~Y~~-~--e~~~~dV~~fL~~L~~~gl 79 (81)
T TIGR03859 32 SAGEILELCDGKRSLAEIIQELAQRFPA-A--EEIEDDVIAFLAVARAKHW 79 (81)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHcCC-h--hhHHHHHHHHHHHHHHCcC
Confidence 3344555555555677777777777654 2 3456799999999998875
No 322
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=22.89 E-value=2.9e+02 Score=26.44 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=54.8
Q ss_pred cCCCCCchHHHHHHHHHHC----CCcEEEEcCCCh---HhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHH
Q 017995 67 CKVKALPGANRLIKHLSCH----GVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR 139 (362)
Q Consensus 67 ~~~~~~pgv~~~L~~L~~~----g~~~~i~S~~~~---~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~ 139 (362)
..-.+.||+.+.|+.|.+. .+|..++||..- ..-...|...+|.. |+.+++-.+. ..|+...
T Consensus 48 RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~------Vs~dqviqSH---sP~r~l~-- 116 (389)
T KOG1618|consen 48 RGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVE------VSADQVIQSH---SPFRLLV-- 116 (389)
T ss_pred ecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCc------cCHHHHHhhc---ChHHHHh--
Confidence 4567899999999999988 899999999642 22122343455442 2333332221 1122222
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCEEEE
Q 017995 140 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169 (362)
Q Consensus 140 ~~~~p~~~l~igDs~~d~~aA~~aG~~~i~ 169 (362)
...-++++++|+.. -...|...|++-|+
T Consensus 117 -~~~~k~vLv~G~~~-vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 117 -EYHYKRVLVVGQGS-VREVAEGYGFKNVV 144 (389)
T ss_pred -hhhhceEEEecCCc-HHHHhhccCcccee
Confidence 13347899999554 44558889998554
No 323
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=22.75 E-value=1.3e+02 Score=32.10 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.7
Q ss_pred CCchHHHHHHHHHH-CCCcEEEEcCCChHhHHHHH
Q 017995 71 ALPGANRLIKHLSC-HGVPMALASNSHRATIESKI 104 (362)
Q Consensus 71 ~~pgv~~~L~~L~~-~g~~~~i~S~~~~~~i~~~L 104 (362)
+-+.+.+.|+.|.+ .|+.++|+|+.+...++..+
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~ 549 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRDRDTLERWF 549 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHh
Confidence 45688888999988 48889999888777776655
No 324
>PF13700 DUF4158: Domain of unknown function (DUF4158)
Probab=22.44 E-value=2.7e+02 Score=23.32 Aligned_cols=79 Identities=14% Similarity=-0.022 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh-cCCCCCchHHHHHHHHHHCC
Q 017995 8 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHG 86 (362)
Q Consensus 8 ~a~~~~l~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pgv~~~L~~L~~~g 86 (362)
..+..+++++|++.+.-......+.+..+....+...+|...-.+.-...+........ ....+..=+..++++|+++.
T Consensus 70 ~~i~~va~ql~~~~~~~~~y~~r~~T~~~h~~~I~~~lg~r~~~~~~~~~L~~~l~~~a~~~~~~~~l~~~~~~~L~~~r 149 (166)
T PF13700_consen 70 ADIEYVAKQLGLPPSDLSSYAQRSRTRYRHRAEIREYLGYRPFDESDRAELEEWLREAARTTDDPDDLFNALIEWLRQRR 149 (166)
T ss_pred HHHHHHHHHhCCchHHHHhhhhhhhHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 44455555566543221112223455666666666666654322211222222222222 22333334555666666654
No 325
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=22.39 E-value=6e+02 Score=23.15 Aligned_cols=96 Identities=7% Similarity=0.075 Sum_probs=56.7
Q ss_pred HHHHHHHHHCCCcEEEEcCCChHhHH-----HHHHhhcCCcC-CCcEEEeCCCC------CCCCCCHHHHHHHHHHcCCC
Q 017995 76 NRLIKHLSCHGVPMALASNSHRATIE-----SKISYQHGWNE-SFSVIVGSDEV------RTGKPSPDIFLEAAKRLNME 143 (362)
Q Consensus 76 ~~~L~~L~~~g~~~~i~S~~~~~~i~-----~~L~~~~gl~~-~f~~iv~~~d~------~~gKp~p~~~~~~~~~~~~~ 143 (362)
..+.+.|++.| ++.++-.+....+- ... .++|... .+..++.+.+. .....+++.....+...++.
T Consensus 40 ~~~~~~l~~gg-rl~~~GaGtSg~la~~da~e~~-~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l~ 117 (257)
T cd05007 40 DAAAERLRAGG-RLIYVGAGTSGRLGVLDASELP-PTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLT 117 (257)
T ss_pred HHHHHHHHcCC-EEEEEcCcHHHHHHHHHHHhcc-ccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCCC
Confidence 34456666554 56655544433222 222 3555532 45556555433 23344667777777778888
Q ss_pred CCcEEEE----ecCH---hhHHHHHHcCCEEEEEcCC
Q 017995 144 PSSSLVI----EDSV---IGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 144 p~~~l~i----gDs~---~d~~aA~~aG~~~i~v~~~ 173 (362)
+.+++++ |.++ .-++.|++.|+.++.+...
T Consensus 118 ~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~ 154 (257)
T cd05007 118 ERDVVIGIAASGRTPYVLGALRYARARGALTIGIACN 154 (257)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 8887755 4555 3445589999999998763
No 326
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=22.28 E-value=7e+02 Score=23.89 Aligned_cols=92 Identities=11% Similarity=0.042 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH--HHHHHHHcC---CCCCcE
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN---MEPSSS 147 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~--~~~~~~~~~---~~p~~~ 147 (362)
+-+.++.+.|... +...++-......++..- +..++ . |+.+.+ ....|.-.+ +..+.+.+| ++.-.+
T Consensus 88 Esl~Dtarvls~y-~D~Iv~R~~~~~~~~~~a-~~~~v----P-VINa~~-~~~HPtQaLaDl~Ti~e~~g~~~l~g~~i 159 (336)
T PRK03515 88 ESIKDTARVLGRM-YDGIQYRGYGQEIVETLA-EYAGV----P-VWNGLT-NEFHPTQLLADLLTMQEHLPGKAFNEMTL 159 (336)
T ss_pred CCHHHHHHHHHHh-CcEEEEEeCChHHHHHHH-HhCCC----C-EEECCC-CCCChHHHHHHHHHHHHHhCCCCcCCCEE
Confidence 4567777777776 566667666666666554 54432 2 444433 234553222 223345553 667789
Q ss_pred EEEecC----H-hhHHHHHHcCCEEEEEcC
Q 017995 148 LVIEDS----V-IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 148 l~igDs----~-~d~~aA~~aG~~~i~v~~ 172 (362)
.+|||. . ..+.++...|+.+..+.+
T Consensus 160 a~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P 189 (336)
T PRK03515 160 AYAGDARNNMGNSLLEAAALTGLDLRLVAP 189 (336)
T ss_pred EEeCCCcCcHHHHHHHHHHHcCCEEEEECC
Confidence 999995 2 567778889999998876
No 327
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=22.27 E-value=4.4e+02 Score=21.56 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=11.1
Q ss_pred HHHHHcCCEEEEEcC
Q 017995 158 VAGKAAGMEVVAVPS 172 (362)
Q Consensus 158 ~aA~~aG~~~i~v~~ 172 (362)
...++.|..++.++.
T Consensus 115 ~~~~~~g~~v~~~~~ 129 (144)
T TIGR02199 115 ELVESYGGQVVLLPF 129 (144)
T ss_pred HHHHHcCCEEEEEeC
Confidence 345678889888876
No 328
>PF14164 YqzH: YqzH-like protein
Probab=22.09 E-value=1.7e+02 Score=20.71 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHHcCC-----CCCHHHHHh
Q 017995 1 MTDGMFSEVLKTFLVKYGK-----EWDGREKHK 28 (362)
Q Consensus 1 ~Se~~~~~a~~~~l~~~g~-----~~~~~~~~~ 28 (362)
|-++++......+|+++|. |+++++.+.
T Consensus 1 M~ek~I~Kmi~~~l~QYg~d~~~~pls~~E~~~ 33 (64)
T PF14164_consen 1 MNEKLIEKMIINCLRQYGYDVECMPLSDEEWEE 33 (64)
T ss_pred CcHHHHHHHHHHHHHHhCCcccCCCCCHHHHHH
Confidence 7789999999999999975 345555543
No 329
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=21.72 E-value=3.8e+02 Score=21.16 Aligned_cols=9 Identities=33% Similarity=0.372 Sum_probs=5.7
Q ss_pred cEEEeCCCC
Q 017995 115 SVIVGSDEV 123 (362)
Q Consensus 115 ~~iv~~~d~ 123 (362)
+.+++|+|+
T Consensus 87 ~~vv~G~d~ 95 (129)
T cd02171 87 DVFVMGDDW 95 (129)
T ss_pred CEEEECCCC
Confidence 566666666
No 330
>PLN02580 trehalose-phosphatase
Probab=21.67 E-value=1.5e+02 Score=29.08 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=31.7
Q ss_pred CCCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHH
Q 017995 68 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 104 (362)
Q Consensus 68 ~~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L 104 (362)
...+-|++.++|+.|.+. .+++|+|+.+.+.++..+
T Consensus 139 ~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l 174 (384)
T PLN02580 139 RALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELV 174 (384)
T ss_pred cccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHh
Confidence 456678999999999988 689999999999998777
No 331
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=21.28 E-value=7.2e+02 Score=23.70 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH--HHHHHHH-cC-CCCCcEE
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKR-LN-MEPSSSL 148 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~--~~~~~~~-~~-~~p~~~l 148 (362)
+-+.++.+.|... +...++-......++..- +...+ . |+.+.+ ....|.-.+ +..+.+. .| ++.-++.
T Consensus 88 Esl~DTarvls~y-~D~iviR~~~~~~~~~~a-~~s~v----P-VINa~~-~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia 159 (332)
T PRK04284 88 ESTKDTARVLGGM-YDGIEYRGFSQRTVETLA-EYSGV----P-VWNGLT-DEDHPTQVLADFLTAKEHLKKPYKDIKFT 159 (332)
T ss_pred cCHHHHHHHHHHh-CCEEEEecCchHHHHHHH-HhCCC----C-EEECCC-CCCChHHHHHHHHHHHHHhcCCcCCcEEE
Confidence 4567777777776 677777776666666544 44432 2 444433 234554222 2233455 34 6777899
Q ss_pred EEecC----H-hhHHHHHHcCCEEEEEcC
Q 017995 149 VIEDS----V-IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 149 ~igDs----~-~d~~aA~~aG~~~i~v~~ 172 (362)
+|||. . ..+.++...|+.+..+.+
T Consensus 160 ~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P 188 (332)
T PRK04284 160 YVGDGRNNVANALMQGAAIMGMDFHLVCP 188 (332)
T ss_pred EecCCCcchHHHHHHHHHHcCCEEEEECC
Confidence 99995 2 567778889999988876
No 332
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=21.26 E-value=6.9e+02 Score=23.46 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH--HHHHHHHcC-CCCCcEEE
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN-MEPSSSLV 149 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~--~~~~~~~~~-~~p~~~l~ 149 (362)
+-+.++++.|... +...++-......++..- +..+. . |+.+.+ ....|.-.+ +..+.+++| ++.-++.+
T Consensus 86 Esl~Dt~~~l~~~-~D~iv~R~~~~~~~~~~a-~~~~v----P-VINag~-~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~ 157 (304)
T PRK00779 86 EPIEDTARVLSRY-VDAIMIRTFEHETLEELA-EYSTV----P-VINGLT-DLSHPCQILADLLTIYEHRGSLKGLKVAW 157 (304)
T ss_pred cCHHHHHHHHHHh-CCEEEEcCCChhHHHHHH-HhCCC----C-EEeCCC-CCCChHHHHHHHHHHHHHhCCcCCcEEEE
Confidence 3567777878776 677777666666666554 55443 3 444443 334554222 223334555 77788999
Q ss_pred EecCH----hhHHHHHHcCCEEEEEcCC
Q 017995 150 IEDSV----IGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 150 igDs~----~d~~aA~~aG~~~i~v~~~ 173 (362)
|||.. ..+.++...|+.+..+.+.
T Consensus 158 vGd~~~v~~Sl~~~l~~~g~~v~~~~P~ 185 (304)
T PRK00779 158 VGDGNNVANSLLLAAALLGFDLRVATPK 185 (304)
T ss_pred EeCCCccHHHHHHHHHHcCCEEEEECCc
Confidence 99932 4577788999999988763
No 333
>PLN02334 ribulose-phosphate 3-epimerase
Probab=21.23 E-value=5.8e+02 Score=22.58 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHCCCcEEEEcC--CChHhHHHHHHhhcCCcCCCcEEEeC-CCCCCCCC--CHHHHHHHHHHcCC-CCCc
Q 017995 73 PGANRLIKHLSCHGVPMALASN--SHRATIESKISYQHGWNESFSVIVGS-DEVRTGKP--SPDIFLEAAKRLNM-EPSS 146 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~--~~~~~i~~~L~~~~gl~~~f~~iv~~-~d~~~gKp--~p~~~~~~~~~~~~-~p~~ 146 (362)
+...+.++.+++.|..+++..+ ++.+.++..+ ...+. |.|..+ -..+.+|+ .+..+..+.+-... ....
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~-~~~~~----Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~ 176 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVV-EKGLV----DMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELD 176 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHH-hccCC----CEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCc
Confidence 4567889999999999999987 4456555544 33012 544322 12223332 34444433321122 2234
Q ss_pred EEEE-ecCHhhHHHHHHcCCEEEEEcC
Q 017995 147 SLVI-EDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 147 ~l~i-gDs~~d~~aA~~aG~~~i~v~~ 172 (362)
++++ |=+...+....++|...+++..
T Consensus 177 I~a~GGI~~e~i~~l~~aGad~vvvgs 203 (229)
T PLN02334 177 IEVDGGVGPSTIDKAAEAGANVIVAGS 203 (229)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECh
Confidence 6666 4556888889999999888765
No 334
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=21.17 E-value=14 Score=33.96 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=61.4
Q ss_pred CCCCchHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCC-cCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 017995 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS 147 (362)
Q Consensus 69 ~~~~pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl-~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~ 147 (362)
+...|++.++|....+. +.+.+-|.+.+.....++ ..++= ...|.+..--+.+.+- ...|..-+..+|-+.+++
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~-D~LD~~~~i~~~RlyR~~C~~~---~g~yvKdls~~~~dL~~v 204 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLL-DILDPDRKIISHRLYRDSCTLK---DGNYVKDLSVLGRDLSKV 204 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHH-HHccCCCCeeeeeecccceEeE---CCcEEEEcceeccCcccE
Confidence 55789999999999887 888889999999888877 65543 2222222222222111 112222234566788999
Q ss_pred EEEecCHhhHHHHHHcCCEE
Q 017995 148 LVIEDSVIGVVAGKAAGMEV 167 (362)
Q Consensus 148 l~igDs~~d~~aA~~aG~~~ 167 (362)
++|.|++.-...=-+.|+++
T Consensus 205 iIiDNsP~sy~~~p~NgIpI 224 (262)
T KOG1605|consen 205 IIVDNSPQSYRLQPENGIPI 224 (262)
T ss_pred EEEcCChHHhccCccCCCcc
Confidence 99999997776656666664
No 335
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=21.16 E-value=4e+02 Score=25.61 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=25.9
Q ss_pred CCCCcEEEEecCH---hhHHHHHHcCCEEEEEcCC
Q 017995 142 MEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 142 ~~p~~~l~igDs~---~d~~aA~~aG~~~i~v~~~ 173 (362)
..|+-+++.||+. ....+|...|++++.+..+
T Consensus 92 ~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 92 LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 5688788889997 4666788999999988775
No 336
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.85 E-value=7.3e+02 Score=27.92 Aligned_cols=163 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCC------------CHHHHHhhcCCCHHHHHHHHHHHhCCCCCHHHHH-------------HHHHH
Q 017995 6 FSEVLKTFLVKYGKEW------------DGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFV-------------NEVYS 60 (362)
Q Consensus 6 ~~~a~~~~l~~~g~~~------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 60 (362)
+.+|+.++.+...... +++++...+..+....+-.++..+....+.+++. ..+-+
T Consensus 389 ~eea~~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~a~~~g~~~~~~~~~t~i~~~~~~~~~~~~~ 468 (1068)
T PRK12815 389 FESAFQKALRSLEIKRNGLSLPIELSGKSDEELLQDLRHPDDRRLFALLEALRRGITYEEIHELTKIDPFFLQKFEHIVA 468 (1068)
T ss_pred HHHHHHHHHHhhcCCCCCCCCccccccCCHHHHHHHhccCCCChHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_pred HHHhhhcCCCCCchHHHHHHHHHHCCCc---EEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHH
Q 017995 61 MFSDHLCKVKALPGANRLIKHLSCHGVP---MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 137 (362)
Q Consensus 61 ~~~~~~~~~~~~pgv~~~L~~L~~~g~~---~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~ 137 (362)
..........-.+. ++|+.+|+.|+. ++-+.+..+.-++... +.+++.+.++.|=++. -.|....|-.|...-
T Consensus 469 ~~~~~~~~~~~~~~--~~~~~~k~~gfsd~~ia~~~~~~~~~v~~~r-~~~~~~p~~k~vd~~a-~ef~~~t~~~y~ty~ 544 (1068)
T PRK12815 469 LEKKLAEDGLDLSA--DLLRKVKEKGFSDALLAELTGVTEEEVRALR-KKLGIRPSYKMVDTCA-AEFEAKTPYYYSTYF 544 (1068)
T ss_pred HHHHHHhcCccCCH--HHHHHHHHcCCCHHHHHHHhCcCHHHHHHHH-HHCCCeeEEEEecCCc-CcccCCCCceeeeCC
Q ss_pred HHcCCCCC----cEEEEecCHhh--------------HHHHHHcCCEEEEEcC
Q 017995 138 KRLNMEPS----SSLVIEDSVIG--------------VVAGKAAGMEVVAVPS 172 (362)
Q Consensus 138 ~~~~~~p~----~~l~igDs~~d--------------~~aA~~aG~~~i~v~~ 172 (362)
......+. .++++|-++.. ++++++.|+.++.++.
T Consensus 545 ~~~~~~~~~~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~ 597 (1068)
T PRK12815 545 GESEAEPSSEKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINN 597 (1068)
T ss_pred CCCcCccCCCCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeC
No 337
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=20.76 E-value=4.3e+02 Score=20.91 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=47.4
Q ss_pred HHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE-ecCH-
Q 017995 77 RLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI-EDSV- 154 (362)
Q Consensus 77 ~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~i-gDs~- 154 (362)
+.++.|++ |+.+.+....+.+.+...+ +. +|.+++.... +-+++.+..+ ..+ +++.. |-..
T Consensus 10 ~~~~~l~~-~~~v~~~~~~~~~~~~~~l-~~------~d~ii~~~~~---~~~~~~l~~~-~~L-----k~I~~~~~G~d 72 (133)
T PF00389_consen 10 EEIERLEE-GFEVEFCDSPSEEELAERL-KD------ADAIIVGSGT---PLTAEVLEAA-PNL-----KLISTAGAGVD 72 (133)
T ss_dssp HHHHHHHH-TSEEEEESSSSHHHHHHHH-TT------ESEEEESTTS---TBSHHHHHHH-TT------SEEEESSSSCT
T ss_pred HHHHHHHC-CceEEEeCCCCHHHHHHHh-CC------CeEEEEcCCC---CcCHHHHhcc-cee-----EEEEEcccccC
Confidence 44555665 7777777766666555555 33 3788876533 2345555544 222 23333 3222
Q ss_pred -hhHHHHHHcCCEEEEEcCCC
Q 017995 155 -IGVVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 155 -~d~~aA~~aG~~~i~v~~~~ 174 (362)
.|+.+|++.|+.+.-++...
T Consensus 73 ~id~~~a~~~gI~V~n~~g~~ 93 (133)
T PF00389_consen 73 NIDLEAAKERGIPVTNVPGYN 93 (133)
T ss_dssp TB-HHHHHHTTSEEEE-TTTT
T ss_pred cccHHHHhhCeEEEEEeCCcC
Confidence 59999999999999887643
No 338
>PLN02342 ornithine carbamoyltransferase
Probab=20.53 E-value=7.7e+02 Score=23.74 Aligned_cols=92 Identities=9% Similarity=0.058 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHH--HHHHHHHcC-CCCCcEEE
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI--FLEAAKRLN-MEPSSSLV 149 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~--~~~~~~~~~-~~p~~~l~ 149 (362)
+-+.++.+.|... ....++-......++..- +...+ . |+.+.+ ....|.-.+ +..+.+++| ++.-.+.+
T Consensus 128 ESl~DTarvLs~y-~D~IviR~~~~~~~~~la-~~~~v----P-VINA~~-~~~HPtQaLaDl~Ti~e~~G~l~glkva~ 199 (348)
T PLN02342 128 EETRDIARVLSRY-NDIIMARVFAHQDVLDLA-EYSSV----P-VINGLT-DYNHPCQIMADALTIIEHIGRLEGTKVVY 199 (348)
T ss_pred cCHHHHHHHHHHh-CCEEEEeCCChHHHHHHH-HhCCC----C-EEECCC-CCCChHHHHHHHHHHHHHhCCcCCCEEEE
Confidence 4567777777776 566666666666555443 44432 3 444433 234553222 223345555 67788999
Q ss_pred EecCH----hhHHHHHHcCCEEEEEcC
Q 017995 150 IEDSV----IGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 150 igDs~----~d~~aA~~aG~~~i~v~~ 172 (362)
|||.. ..+.++...|+.+..+.+
T Consensus 200 vGD~~nva~Sli~~~~~~G~~v~~~~P 226 (348)
T PLN02342 200 VGDGNNIVHSWLLLAAVLPFHFVCACP 226 (348)
T ss_pred ECCCchhHHHHHHHHHHcCCEEEEECC
Confidence 99943 456778899999988876
No 339
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=20.51 E-value=7e+02 Score=24.98 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHC-----------CCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCH--HHHHHHHHHc
Q 017995 74 GANRLIKHLSCH-----------GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSP--DIFLEAAKRL 140 (362)
Q Consensus 74 gv~~~L~~L~~~-----------g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p--~~~~~~~~~~ 140 (362)
|.+.+.+.|... +.++.+++|.+...+...+ +.++..+. -.||+|....--.|.. ..+...++++
T Consensus 85 G~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~l-~~l~~~~T-l~iviSKSGtT~ET~~~f~~~~~~l~~~ 162 (446)
T PRK00973 85 GNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASIL-DVIDLEKT-LFNVISKSGNTAETLANYLIIRGILEKL 162 (446)
T ss_pred HHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHHH-HhCCcccE-EEEEEeCCCCCHHHHHHHHHHHHHHHhc
Confidence 666666666532 2347778888888888888 66665442 3455555444322221 2222333444
Q ss_pred CC-CCCcEEEEecCH--hhHHHHHHcCCEEEEEcCC
Q 017995 141 NM-EPSSSLVIEDSV--IGVVAGKAAGMEVVAVPSL 173 (362)
Q Consensus 141 ~~-~p~~~l~igDs~--~d~~aA~~aG~~~i~v~~~ 173 (362)
|. ...++++|-|.. .-.+.|++.|+++..++..
T Consensus 163 g~~~~~~~vaiTd~~~g~L~~~A~~~g~~~f~ip~~ 198 (446)
T PRK00973 163 GLDPKKHLVFTTDPEKGKLKKIAEKEGYRTLEIPEN 198 (446)
T ss_pred CccccceEEEEcCCCccchHHHHHHcCCcEEeeCCC
Confidence 53 234688888843 3356699999998888773
No 340
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=20.42 E-value=6.2e+02 Score=25.99 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=54.8
Q ss_pred cEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc----
Q 017995 88 PMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA---- 163 (362)
Q Consensus 88 ~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~igDs~~d~~aA~~a---- 163 (362)
+.+|++-.+-+-+..++ +.+|. +.|+.+... ..|+.+-+..++++. +.+++++.=+..+-+.+|+++
T Consensus 314 ~~~ivAv~~g~g~~~~f-~~~Ga----~~vi~ggqt--~nPS~~dll~ai~~~--~a~~V~iLPNn~nii~aA~qa~~~~ 384 (530)
T TIGR03599 314 EYAIVAVAPGEGIAELF-KSLGA----DVVIEGGQT--MNPSTEDILKAIEKV--NAKNVFVLPNNKNIILAAEQAAELA 384 (530)
T ss_pred CeEEEEEcCCchHHHHH-HHCCC----CEEEeCCCC--CCCCHHHHHHHHHhC--CCCeEEEecCCccHHHHHHHHHHHh
Confidence 56677666666667788 77886 778777643 368888888888764 456888886666666665444
Q ss_pred CCEEEEEcCC
Q 017995 164 GMEVVAVPSL 173 (362)
Q Consensus 164 G~~~i~v~~~ 173 (362)
+.++++|++.
T Consensus 385 ~~~v~vvpT~ 394 (530)
T TIGR03599 385 DKNVVVIPTK 394 (530)
T ss_pred CCcEEEEeCC
Confidence 7888888874
No 341
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=20.15 E-value=7.4e+02 Score=23.68 Aligned_cols=90 Identities=14% Similarity=0.146 Sum_probs=53.0
Q ss_pred HHHHHHHHHCCCcEEEEcCCChHhHHHHHHhhcCCcCCCcEEEeCCCCC--CCCCCH--HHHHHHHHHc-CCCCCcEEEE
Q 017995 76 NRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR--TGKPSP--DIFLEAAKRL-NMEPSSSLVI 150 (362)
Q Consensus 76 ~~~L~~L~~~g~~~~i~S~~~~~~i~~~L~~~~gl~~~f~~iv~~~d~~--~gKp~p--~~~~~~~~~~-~~~p~~~l~i 150 (362)
+.++..|+++|+.+.|.+-... .+..+| +..|+ ++++.|.... .+|--. .-...+++.. ..+| ++++-
T Consensus 17 k~~I~eL~~~GheV~it~R~~~-~~~~LL-~~yg~----~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~~~~p-Dv~is 89 (335)
T PF04007_consen 17 KNIIRELEKRGHEVLITARDKD-ETEELL-DLYGI----DYIVIGKHGDSLYGKLLESIERQYKLLKLIKKFKP-DVAIS 89 (335)
T ss_pred HHHHHHHHhCCCEEEEEEeccc-hHHHHH-HHcCC----CeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CEEEe
Confidence 4678899999997776666544 455677 77776 7777765331 111110 0000111111 1234 34444
Q ss_pred ecCHhhHHHHHHcCCEEEEEcC
Q 017995 151 EDSVIGVVAGKAAGMEVVAVPS 172 (362)
Q Consensus 151 gDs~~d~~aA~~aG~~~i~v~~ 172 (362)
..|+.-...|.-.|+++|.+.+
T Consensus 90 ~~s~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 90 FGSPEAARVAFGLGIPSIVFND 111 (335)
T ss_pred cCcHHHHHHHHHhCCCeEEEec
Confidence 6677777789999999998866
No 342
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=20.13 E-value=8.7e+02 Score=24.17 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecCHh----hHHHHHHcCCEEEEEcCCC
Q 017995 130 PDIFLEAAKRLNMEPSSSLVIEDSVI----GVVAGKAAGMEVVAVPSLP 174 (362)
Q Consensus 130 p~~~~~~~~~~~~~p~~~l~igDs~~----d~~aA~~aG~~~i~v~~~~ 174 (362)
.+....++++.|---+-+++|||..- +.++|...|+.+.+|..+.
T Consensus 208 ~~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgP 256 (505)
T PF10113_consen 208 MEEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGP 256 (505)
T ss_pred HHHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 44566777889988899999999984 5566788889999997753
No 343
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=20.02 E-value=4.2e+02 Score=25.84 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHCCCcEEEEcCCCh--HhHHHHHHhhcCCcCCCcEEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 017995 73 PGANRLIKHLSCHGVPMALASNSHR--ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 150 (362)
Q Consensus 73 pgv~~~L~~L~~~g~~~~i~S~~~~--~~i~~~L~~~~gl~~~f~~iv~~~d~~~gKp~p~~~~~~~~~~~~~p~~~l~i 150 (362)
.+...+++.+++.++...+...... ..+...+ +.+|+ ..+..+.+.-.---+.......++++|++......+
T Consensus 51 ~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l-~~~gi----~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~ 125 (423)
T TIGR00877 51 TDIEALVEFAKKKKIDLAVIGPEAPLVLGLVDAL-EEAGI----PVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVF 125 (423)
T ss_pred CCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHH-HHCCC----eEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEE
Confidence 3667788888888776666443211 1122234 44444 111111111111224566777888999988777777
Q ss_pred ecCHhhHHHHHHcCCE-EEEEc
Q 017995 151 EDSVIGVVAGKAAGME-VVAVP 171 (362)
Q Consensus 151 gDs~~d~~aA~~aG~~-~i~v~ 171 (362)
.+...-.+.+...|++ +++=+
T Consensus 126 ~~~~~~~~~~~~~g~P~~VvKp 147 (423)
T TIGR00877 126 TDPEEALSYIQEKGAPAIVVKA 147 (423)
T ss_pred CCHHHHHHHHHhcCCCeEEEEE
Confidence 6543334556788888 65433
Done!