RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017995
(362 letters)
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain-
containing protein 1A; HDHD1A, haloacid
dehalogenase-like hydrolase domain containing 1A; 2.00A
{Homo sapiens}
Length = 250
Score = 233 bits (597), Expect = 7e-76
Identities = 82/207 (39%), Positives = 114/207 (55%), Gaps = 4/207 (1%)
Query: 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM 61
T+ ++S V + +Y K++ K ++GK LE A II++ LP +K E V E +
Sbjct: 44 TERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTK 103
Query: 62 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD 121
+ +PGA +LI HL HG+P ALA++S A+ + K S + FS IV D
Sbjct: 104 LKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGD 163
Query: 122 --EVRTGKPSPDIFLEAAKRLNMEPSSS--LVIEDSVIGVVAGKAAGMEVVAVPSLPKQT 177
EV+ GKP PDIFL AKR + P+ LV ED+ GV A AAGM+VV VP
Sbjct: 164 DPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSR 223
Query: 178 HRYTAADEVINSLLDLRPEKWGLPPFQ 204
T A V+NSL D +PE +GLP ++
Sbjct: 224 DLTTKATLVLNSLQDFQPELFGLPSYE 250
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin
cofactors, metal binding; HET: ADP; 1.60A
{Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A*
1n07_A* 1n06_A*
Length = 163
Score = 203 bits (519), Expect = 2e-65
Identities = 74/168 (44%), Positives = 102/168 (60%), Gaps = 8/168 (4%)
Query: 189 SLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDV 248
+L + RPE G E P G VV G GRGSK LGIPTAN+S + ++
Sbjct: 4 NLEEKRPEIVG-------PEKVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQEL 56
Query: 249 LSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLV 308
L SGVYFG+A + R V+ MVMS+GWNPY+ N ++ E L+ EDFY+E + ++
Sbjct: 57 LRYRDSGVYFGYAMVQKR-VFPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVI 115
Query: 309 IVGYIRPEANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDDPYLKI 356
++GYIRPE N+ L+ LI IH D +VA ++D P YS Y+ DP+ K+
Sbjct: 116 VLGYIRPELNYAGLDKLIEDIHTDIRVALNSMDRPSYSSYKKDPFFKV 163
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP;
1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A*
1q9s_A*
Length = 147
Score = 202 bits (517), Expect = 3e-65
Identities = 67/142 (47%), Positives = 102/142 (71%)
Query: 215 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRGVYKMVMS 274
P++ G VV+G GRGSK LGIPTAN + ++ ++ +G+Y+GWA + + V+KMV+S
Sbjct: 4 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVS 63
Query: 275 IGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDRK 334
IGWNPY+ N +K++E ++H F EDFY E L++ IVGY+RPE NF SLE+LI+ I D +
Sbjct: 64 IGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIE 123
Query: 335 VAERALDLPLYSKYRDDPYLKI 356
A++ L+LP Y K ++D + ++
Sbjct: 124 EAKKRLELPEYLKIKEDNFFQV 145
>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics,
structural genomics of P protozoa consortium, SGPP,
transferase; 2.40A {Trypanosoma brucei}
Length = 181
Score = 193 bits (492), Expect = 5e-61
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 203 FQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGY-SDVLSEHPSGVYFGWA 261
+ T +P+++ G VV G GRG LG PTAN+ + + L + + V +GW
Sbjct: 5 HHHHMRQTGSFQPFFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWG 64
Query: 262 GLSTR--------GVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYI 313
+S G Y SIG+N FD T+EP+ LHEF DFY + ++++G I
Sbjct: 65 TVSQVPGKERESFGPYPFAASIGFNMQFDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEI 124
Query: 314 RPEANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDDPYLKITSSK 360
R +F SL+ L+ I D + L P ++ + SS
Sbjct: 125 RSMGSFHSLQALVDTIKSDVQFTRDMLQKPQLQEFSRHSLFESPSST 171
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.86A {Streptococcus thermophilus lmg 18311}
Length = 214
Score = 186 bits (475), Expect = 4e-58
Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 4/188 (2%)
Query: 8 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC 67
+ +FL + G D +G + I+ D E + ++
Sbjct: 25 DRRASFLGQKGISIDHLPPSFFIGGNTKQVWENILRDEYDKWDVSTLQEEYNTYKQNNPL 84
Query: 68 --KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT 125
K P +++ + G+ + LAS+S +A I + ++ F +++ +E +
Sbjct: 85 PYKELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRALE-ENRLQGFFDIVLSGEEFKE 143
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE 185
KP+P+I+L A K+LN++ S +L+IEDS G+ AG AA +EV A+ + +AA
Sbjct: 144 SKPNPEIYLTALKQLNVQASRALIIEDSEKGIAAGVAADVEVWAIRD-NEFGMDQSAAKG 202
Query: 186 VINSLLDL 193
+++SL D+
Sbjct: 203 LLDSLTDV 210
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 181 bits (462), Expect = 9e-56
Identities = 44/212 (20%), Positives = 97/212 (45%), Gaps = 12/212 (5%)
Query: 8 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC 67
E + ++G E + G+T I+ A E + +Y ++
Sbjct: 43 ESWHKIMKRFGFGLSREEAYMHEGRTGASTINIVSRRERGHDATEEEIKAIYQAKTEEFN 102
Query: 68 K---VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 124
K + +PGA ++ + G+ + + S + ++ ++++ +++V + +V+
Sbjct: 103 KCPKAERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQANLMVTAFDVK 162
Query: 125 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTA 182
GKP+P+ +L A K+ +P+ +LVIE++ +GV AG AAG+ +AV + L
Sbjct: 163 YGKPNPEPYLMALKKGGFKPNEALVIENAPLGVQAGVAAGIFTIAVNTGPLHDNVLLNEG 222
Query: 183 ADEVINSLLDLRPEKWGLPPFQDWIEGTLPSE 214
A+ + +S+ D + W + ++ L +
Sbjct: 223 ANLLFHSMPDF-NKNW------ETLQSALKQD 247
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure,
structural genomics, NPPSFA; HET: MSE GOL; 1.73A
{Thermotoga maritima MSB8} PDB: 3kbb_A*
Length = 216
Score = 175 bits (445), Expect = 2e-53
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 4/195 (2%)
Query: 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM 61
T+ ++ E + YGK + +I+G E I++E + + F V+
Sbjct: 15 TEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALEIKDSLENFKKRVHEE 74
Query: 62 FSDHLCK-VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 120
+ +K PG ++ + + +ALA+++ + ++ + + F V+V
Sbjct: 75 KKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQREALERLR-RLDLEKYFDVMVFG 133
Query: 121 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP--SLPKQTH 178
D+V+ GKP P+I+L +RLN+ P +V EDS GV A K+AG+E + SL
Sbjct: 134 DQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKA 193
Query: 179 RYTAADEVINSLLDL 193
A + ++
Sbjct: 194 LLEAGAVALVKPEEI 208
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 171 bits (436), Expect = 4e-52
Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 5/194 (2%)
Query: 8 EVLKTFLVKYGKEWDGREKH-KIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSDH 65
+ G + R + +G + ++ E V V +
Sbjct: 29 RAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISL 88
Query: 66 LCK-VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 124
+ + LPG + G+ + LAS S +E ++ +SF + ++++
Sbjct: 89 VEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLT-MFDLRDSFDALASAEKLP 147
Query: 125 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAA 183
KP P ++L+ A +L ++P + + +EDSV G++A KAA M + VP+ Q R+ A
Sbjct: 148 YSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLA 207
Query: 184 DEVINSLLDLRPEK 197
+ ++SL +L +
Sbjct: 208 NVKLSSLTELTAKD 221
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 170 bits (433), Expect = 2e-51
Identities = 42/191 (21%), Positives = 87/191 (45%), Gaps = 5/191 (2%)
Query: 8 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH-- 65
E + +G + E + G+T I+ + A E + +Y S
Sbjct: 44 EAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILFN 103
Query: 66 -LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 124
+ + +PGA L++ + G+ + + S + ++ ++ + ++V + +V+
Sbjct: 104 SYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDVK 163
Query: 125 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTA 182
GKP+P+ +L A K+ ++ ++VIE++ +GV AG AG+ +AV + L Q
Sbjct: 164 YGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAG 223
Query: 183 ADEVINSLLDL 193
AD + S+ L
Sbjct: 224 ADLLFPSMQTL 234
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium
binding site, enzyme function initiativ; 1.60A
{Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Length = 259
Score = 166 bits (423), Expect = 9e-50
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 13/211 (6%)
Query: 2 TDGMFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS 60
++G+ ++V ++ L + G D E G+ A + + + +F++ + +
Sbjct: 42 SEGIIAQVWQSVLAERGLHLDLTEIAMYFTGQRFDGVLAYLAQQHDFVPP-PDFLDVLET 100
Query: 61 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIV 118
F+ + V A+ GA ++ L GVP A+ SNS R + K+ G E +
Sbjct: 101 RFNAAMTGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLR-VAGLTELAGEHIYD 159
Query: 119 GSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV--PSLPKQ 176
S GKP PD++ AA++L + P +VIEDSV G AG AAG + + P P
Sbjct: 160 PSWVGGRGKPHPDLYTFAAQQLGILPERCVVIEDSVTGGAAGLAAGATLWGLLVPGHPHP 219
Query: 177 TH----RYTAADEVINSLLDLRP--EKWGLP 201
A V+ S +LR + GL
Sbjct: 220 DGAAALSRLGAARVLTSHAELRAALAEAGLL 250
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 158 bits (403), Expect = 3e-47
Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 14/197 (7%)
Query: 8 EVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFV------NEVYS 60
K + G R+ ++ G + + I++ + EF N+ Y
Sbjct: 22 RAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKVSAEEFKELAKRKNDNYV 81
Query: 61 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS 120
+ PG +L+K L + + +ALAS S + + F I
Sbjct: 82 KMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLE---RMNLTGYFDAIADP 138
Query: 121 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 180
EV KP+PDIF+ AA + + PS S+ +EDS G+ A K +G + V
Sbjct: 139 AEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGR----PEDL 194
Query: 181 TAADEVINSLLDLRPEK 197
++ E
Sbjct: 195 GDDIVIVPDTSHYTLEF 211
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics,
protein structure initiative, NEW research center for
structural genomics; 3.00A {Bacillus subtilis}
Length = 233
Score = 155 bits (394), Expect = 7e-46
Identities = 57/198 (28%), Positives = 78/198 (39%), Gaps = 15/198 (7%)
Query: 8 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA-----KHEFV---NEVY 59
K + +D ++ G + E I+ G K E + N Y
Sbjct: 22 LAWKHIAEQIDIPFDRDMNERLKGISREESLESILIFGGAETKYTNAEKQELMHRKNRDY 81
Query: 60 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG 119
M L LPG RL+ L + + LAS+S A KI + + F IV
Sbjct: 82 QMLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSSRNAP---KILRRLAIIDDFHAIVD 138
Query: 120 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR 179
+ GKP PDIFL AA L++ P+ IED+ G+ A K+AGM V V
Sbjct: 139 PTTLAKGKPDPDIFLTAAAMLDVSPADCAAIEDAEAGISAIKSAGMFAVGVGQ----GQP 194
Query: 180 YTAADEVINSLLDLRPEK 197
AD V+ DL E
Sbjct: 195 MLGADLVVRQTSDLTLEL 212
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A
{Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 150 bits (380), Expect = 9e-44
Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 17/209 (8%)
Query: 2 TDGMFSEVLKTFLVKYGKEWDGREKHK-IVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS 60
++ + ++V L + G E + G T + + +P +++
Sbjct: 18 SEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVESEASIP-LSASLLDKSEK 76
Query: 61 MFSDHLCK-VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG 119
+ L + VK + G + L P + SNS ++ ++ + G F+ +
Sbjct: 77 LLDMRLERDVKIIDGVKFALSRL---TTPRCICSNSSSHRLDMMLT-KVGLKPYFAPHIY 132
Query: 120 SDE---VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP-- 174
S + KP PDIFL A + + P +V+EDSV G+ +AAGM V+
Sbjct: 133 SAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGMRVIGFTGASHT 192
Query: 175 ----KQTHRYTAADEVINSLLDLRPEKWG 199
A+ VI+ + DL P
Sbjct: 193 YPSHADRLTDAGAETVISRMQDL-PAVIA 220
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 150 bits (380), Expect = 1e-43
Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 12/196 (6%)
Query: 8 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFV------NEVYSM 61
K L H+ +G + + + G+ + + Y
Sbjct: 26 AAWKEALDAENIPLAMWRIHRKIGMSGGLMLKSLSRETGMSITDEQAERLSEKHAQAYER 85
Query: 62 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD 121
+ ALPGA L++ L + +A++ T + + + IV D
Sbjct: 86 LQHQ---IIALPGAVELLETLDKENLKWCIATSGGIDTATINLK-ALKLDINKINIVTRD 141
Query: 122 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHR 179
+V GKP PD+FL AAK++ LVI D++ ++A + V + S
Sbjct: 142 DVSYGKPDPDLFLAAAKKIGAPIDECLVIGDAIWDMLAARRCKATGVGLLSGGYDIGELE 201
Query: 180 YTAADEVINSLLDLRP 195
A V LDL
Sbjct: 202 RAGALRVYEDPLDLLN 217
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative
phosphoglucomutase, enzyme function initiative
structural genomics, isomerase; 1.70A {Escherichia coli}
Length = 243
Score = 148 bits (375), Expect = 6e-43
Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 17/195 (8%)
Query: 11 KTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP--------CAKHEFVNEVYSMF 62
+ + G D + + G + E I++ G N +Y
Sbjct: 28 QQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNSQERAQLAYRKNLLYVHS 87
Query: 63 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE 122
L LPG L+ L + + LAS S A E F+ + +
Sbjct: 88 LRELTVNAVLPGIRSLLADLRAQQISVGLASVSLNAPTILA---ALELREFFTFCADASQ 144
Query: 123 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA 182
++ KP P+IFL A L + P + + IED+ G+ A A+GM V + + T
Sbjct: 145 LKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGIGA------GLTG 198
Query: 183 ADEVINSLLDLRPEK 197
A ++ S L +
Sbjct: 199 AQLLLPSTESLTWPR 213
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 144 bits (366), Expect = 3e-41
Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 14/206 (6%)
Query: 2 TDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM 61
+ + + F H G + A D+ ++ E+
Sbjct: 49 SQPAIAAFWRDFGKDKPYFDAEHVIHISHGWRTYDAIAKFAPDFADEEYVNKLEGEIPEK 108
Query: 62 FSDHLCKVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGS 120
+ +H +PGA +L L+ A+A++ R + + + +
Sbjct: 109 YGEH---SIEVPGAVKLCNALNALPKEKWAVATSGTRDMAKKWF--DILKIKRPEYFITA 163
Query: 121 DEVRTGKPSPDIFLEAAKRLN-------MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS- 172
++V+ GKP P+ +L+ L S +V ED+ G+ AGKAAG ++V + +
Sbjct: 164 NDVKQGKPHPEPYLKGRNGLGFPINEQDPSKSKVVVFEDAPAGIAAGKAAGCKIVGIATT 223
Query: 173 LPKQTHRYTAADEVINSLLDLRPEKW 198
+ D ++ + +R ++
Sbjct: 224 FDLDFLKEKGCDIIVKNHESIRVGEY 249
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase,
nucleotide-binding, transferase, ATP-BIND
multifunctional enzyme; 1.95A {Corynebacterium
ammoniagenes}
Length = 338
Score = 112 bits (282), Expect = 2e-28
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 215 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTRG------- 267
+Y+ GPVV+G GRG K LG PTAN + GVY GW +
Sbjct: 186 HFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALP---ADGVYAGWLTILPTEAPVSGNM 242
Query: 268 ----VYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLE 323
Y +S+G NP F + ++++E ++L + D D Y ++ + V ++R F S+E
Sbjct: 243 EPEVAYAAAISVGTNPTFGDEQRSVESFVL-DRDADLYGHDVKVEFVDHVRAMEKFDSVE 301
Query: 324 TLIAKIHEDRKVAERAL 340
L+ + +D + L
Sbjct: 302 QLLEVMAKDVQKTRTLL 318
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 109 bits (274), Expect = 6e-28
Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 15/180 (8%)
Query: 8 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP---------CAKHEFVNEV 58
+ G E E + +G E ++ + + + E + +
Sbjct: 35 YAFMELFKQEGIEVTQAEAREPMGTEKSEHIRRMLGNSRIANAWLSIKGQASNEEDIKRL 94
Query: 59 YSMFSDHLCK-----VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES 113
Y +F+ + + +PG + L G+ + + + + +
Sbjct: 95 YDLFAPIQTRIVAQRSQLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYT 154
Query: 114 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSVIGVVAGKAAGMEVVAVPS 172
+ V + +V G+P PD+ L+ A L + + + ++D++ G+ G AGM V V
Sbjct: 155 PASTVFATDVVRGRPFPDMALKVALELEVGHVNGCIKVDDTLPGIEEGLRAGMWTVGVSC 214
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Length = 308
Score = 109 bits (275), Expect = 1e-27
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 215 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHP-SGVYFGWAGLSTRGVYKMVM 273
P G VV G RG +G PTANL + + P GVY + + Y+ +
Sbjct: 189 PLPSRGMVVHGNARGRT-IGYPTANLVLLDRTYM----PADGVYVVDVEIQRQ-KYRAMA 242
Query: 274 SIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHEDR 333
S+G N FD E E + +F++D Y E + + + IR F S++ L+ ++ D
Sbjct: 243 SVGKNVTFDGEEARFEVNIF-DFNQDIYGETVMVYWLDRIRDMTKFDSVDQLVDQLKADE 301
Query: 334 KVAER 338
+V
Sbjct: 302 EVTRN 306
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin
binding domain, 6-stranded beta barrel nucleotide
binding domain; HET: CIT; 1.90A {Thermotoga maritima}
SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A*
1t6z_A* 2i1l_A
Length = 293
Score = 107 bits (271), Expect = 3e-27
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 215 PWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHP-SGVYFGWAGLSTRGVYKMVM 273
+ I G V K G K LG PTAN+ V GVY L VM
Sbjct: 159 YFEIEGIVHKDREFGRK-LGFPTANIDRGNEKLVD---LKRGVYLVRVHLPDGKKKFGVM 214
Query: 274 SIGWNPYFDNAEK-TIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHED 332
++G+ P +A E ++L +F+ D Y + L L ++ ++R E F S+E L A I +D
Sbjct: 215 NVGFRPTVGDARNVKYEVYIL-DFEGDLYGQRLKLEVLKFMRDEKKFDSIEELKAAIDQD 273
Query: 333 RKVAERALDLPLYSKYRDD 351
K A +D + SK+ +
Sbjct: 274 VKSARNMIDDIINSKFEKE 292
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 94.8 bits (236), Expect = 5e-24
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 8/127 (6%)
Query: 70 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS 129
+ L+ +GV + SN + I + N ++ S E+ KP
Sbjct: 18 EDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIR-ELETNGVVDKVLLSGELGVEKPE 76
Query: 130 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS 189
F AA +++ ++++DS++ V AG+ V + A I
Sbjct: 77 EAAFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVYYQQFDR-------AVVEIVG 129
Query: 190 LLDLRPE 196
L L E
Sbjct: 130 LFGLEGE 136
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 95.8 bits (239), Expect = 2e-23
Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 11/190 (5%)
Query: 8 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY-SMFSDHL 66
L + G + + + + + + I + A + N + S SD+
Sbjct: 46 TTFYQVLDQMGYKNIDLDS---IPNSTIPKYLITLLGKRWKEATILYENSLEKSQKSDN- 101
Query: 67 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG 126
GA L+ L + + MA+ SN + + + F I+GS + T
Sbjct: 102 --FMLNDGAIELLDTLKENNITMAIVSNKNGERLR-SEIHHKNLTHYFDSIIGSGDTGTI 158
Query: 127 KPSPDIFLEAAKRLNMEPSSS-LVIEDSVIGVVAGKAAGMEVVAVP--SLPKQTHRYTAA 183
KPSP+ L A +N+EPS I DS+ + + AG + ++ K +
Sbjct: 159 KPSPEPVLAALTNINIEPSKEVFFIGDSISDIQSAIEAGCLPIKYGSTNIIKDILSFKNF 218
Query: 184 DEVINSLLDL 193
++ N + L
Sbjct: 219 YDIRNFICQL 228
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.10A {Streptococcus pneumoniae}
SCOP: c.108.1.6
Length = 207
Score = 95.0 bits (237), Expect = 3e-23
Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 15/185 (8%)
Query: 14 LVKYGKEWDGREKHKIVGKTPLEEA-AIIVEDYGLPCAKHEFVNEVYSMFSDHLC-KVKA 71
++ +D + + + K +++ + ED L E +N+V + +V
Sbjct: 30 FAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNL---DVEVLNQVRAQSLAEKNAQVVL 86
Query: 72 LPGANRLIKHLSCHGVPMALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSP 130
+PGA ++ G+ + ++ + A I G F+ I+ S KPSP
Sbjct: 87 MPGAREVLAWADESGIQQFIYTHKGNNAF---TILKDLGVESYFTEILTSQSGFVRKPSP 143
Query: 131 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL 190
+ + + ++ I D + V + +G++ + + I +L
Sbjct: 144 EAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINF------LESTYEGNHRIQAL 197
Query: 191 LDLRP 195
D+
Sbjct: 198 ADISR 202
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily,
phosphonotase, metal binding; 2.30A {Bacillus cereus}
SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A
2iof_K* 1rdf_A 1fez_A
Length = 267
Score = 96.5 bits (240), Expect = 3e-23
Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 42/229 (18%)
Query: 8 EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGL---------PCAKHEFVNEV 58
EV K G E K +G ++ + E + + E+
Sbjct: 27 EVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMPRIASEWNRVFRQLPTEADIQEM 86
Query: 59 YSMFSDHL-----CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES 113
Y F + L + G +I L G+ + + R ++ +
Sbjct: 87 YEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAK-EAALQGY 145
Query: 114 F-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSVIGVVAGKAAGMEVVAVP 171
+V D+V G+P P + + A L + P + + + D+V + G+ AGM V V
Sbjct: 146 KPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVI 205
Query: 172 S-------LPKQTHRYTA------------------ADEVINSLLDLRP 195
++ + A I ++ +L
Sbjct: 206 LGSSELGLTEEEVENMDSVELREKIEVVRNRFVENGAHFTIETMQELES 254
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
haloacid dehalogenase-like F PSI, protein structure
initiative; 1.40A {Streptococcus pneumoniae} SCOP:
c.108.1.3
Length = 190
Score = 92.2 bits (230), Expect = 2e-22
Identities = 33/159 (20%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 14 LVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC-KVKAL 72
L YG D ++ + + +E + E E Y
Sbjct: 32 LALYGITQDHDSVYQALKVS----TPFAIETFA---PNLENFLEKYKENEARELEHPILF 84
Query: 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 132
G + L++ +S G L S+ + +E I + F+ +V S KP+P+
Sbjct: 85 EGVSDLLEDISNQGGRHFLVSHRNDQVLE--ILEKTSIAAYFTEVVTSSSGFKRKPNPES 142
Query: 133 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP 171
L ++ + LVI D I + AG+AAG++
Sbjct: 143 MLYLREKYQISS--GLVIGDRPIDIEAGQAAGLDTHLFT 179
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics,
PSI-2, protein structure initiative, joint center
structural genomics; HET: MSE; 1.50A {Lactobacillus
plantarum} SCOP: c.108.1.6
Length = 209
Score = 91.8 bits (229), Expect = 4e-22
Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 9/154 (5%)
Query: 46 GLPCAKHEFVNEVY-SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASN-SHRATIESK 103
G+ ++ + Y + + H +++ PG L + L + + + ++
Sbjct: 58 GIAASEFDHFQAQYEDVMASHYDQIELYPGITSLFEQLP-SELRLGIVTSQRRNELE--S 114
Query: 104 ISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 163
+ + +V + +D+ KP P L A +++N+ P ++L I DSV +AA
Sbjct: 115 GMRSYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAA 174
Query: 164 GMEVVAVP--SLPKQTHRYTAADEVINSLLDLRP 195
++ P H+ LD+
Sbjct: 175 NVDFGLAVWGMDPNADHQ--KVAHRFQKPLDILE 206
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 225
Score = 92.2 bits (230), Expect = 4e-22
Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 13/166 (7%)
Query: 47 LPCAKHEFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCHGVPMALASN-SHRATI 100
+ + +S P + HL G+ + + S +
Sbjct: 61 TGITDADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRIL 120
Query: 101 ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG 160
H ++ F +I+G ++V KP P+ L A RL P L I DS +
Sbjct: 121 --SFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTA 178
Query: 161 KAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDLRP---EKWGLP 201
AAG+ V S Q + D +I++L L +K G P
Sbjct: 179 AAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLISVPEDKSGCP 224
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 88.2 bits (219), Expect = 2e-20
Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 14/185 (7%)
Query: 24 REKHKIVGKTPLEEAAIIVEDYGLPCAK-HEFVNEVYSMFSDHL------CKVKALPGAN 76
H GK ++ + GL A+ + ++ + + L G
Sbjct: 40 TGSHDFSGKMDGAIIYEVLSNVGLERAEIADKFDKAKETYIALFRERARREDITLLEGVR 99
Query: 77 RLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE 135
L+ LS V + L + + A+ K+ G + F +D+ P I LE
Sbjct: 100 ELLDALSSRSDVLLGLLTGNFEASGRHKLK-LPGIDHYFPFGAFADDALDRNELPHIALE 158
Query: 136 AAKRL---NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSL 190
A+R+ N PS ++I D+ + + +AV + + + +
Sbjct: 159 RARRMTGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNF 218
Query: 191 LDLRP 195
+
Sbjct: 219 AETDE 223
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase-LI superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 86.6 bits (215), Expect = 3e-20
Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 24/185 (12%)
Query: 10 LKTFLVKYGKEWDGREKHKIVGKTPLEEA-AIIVEDYGLPCAKHEFVNEVYSMFSDHLCK 68
F ++ E G+ L E +V +F +
Sbjct: 36 TDDFTERHRLAAPELEL----GRMTLAEYLEQVVFYQPRDFTPEDFRAVMEEQS------ 85
Query: 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP 128
+ P L + L M +N R E +I G E S + KP
Sbjct: 86 -QPRPEVLALARDLG-QRYRMYSLNNEGRDLNEYRIR-TFGLGEFLLAFFTSSALGVMKP 142
Query: 129 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN 188
+P ++ + P +++++D + V A +A GM + A ++
Sbjct: 143 NPAMYRLGLTLAQVRPEEAVMVDDRLQNVQAARAVGM----------HAVQCVDAAQLRE 192
Query: 189 SLLDL 193
L L
Sbjct: 193 ELAAL 197
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A*
3r09_A*
Length = 205
Score = 85.4 bits (212), Expect = 8e-20
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 11/164 (6%)
Query: 37 EAAIIVEDYGLPC----AKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALA 92
E I+ LP AKH ++ E + + PGA L++ L+ G + +
Sbjct: 36 EDDILTHLAALPADESAAKHAWLLEHERDLAQGS---RPAPGAVELVRELAGRGYRLGIL 92
Query: 93 SNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 151
+ + R + G + F+ V + KP P L+ A+ ++ PS +++
Sbjct: 93 TRNARELAHVTLE-AIGLADCFAEADVLGRDEAPPKPHPGGLLKLAEAWDVSPSRMVMVG 151
Query: 152 DSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 195
D + G+AAG V V D LR
Sbjct: 152 DYRFDLDCGRAAGTRTVLVN--LPDNPWPELTDWHARDCAQLRD 193
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase,
phosphonoacetaldehyde hydrolase, protein binding; HET:
EPE; 1.90A {Pseudomonas syringae PV}
Length = 196
Score = 85.0 bits (210), Expect = 1e-19
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 69 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP 128
+ PGA +K L G+P A A + ++ + G P
Sbjct: 35 AQLTPGAQNALKALRDQGMPCAWIDELPEALSTPLAAPV------NDWMIAAPRPTAGWP 88
Query: 129 SPDIFLEAAKRLNMEPSSS-LVIEDSVIGVVAGKAAGMEVVAVP 171
PD A LN+ ++I + +G AG+ + +
Sbjct: 89 QPDACWMALMALNVSQLEGCVLISGDPRLLQSGLNAGLWTIGLA 132
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin,
four-helix bundle, structural GENO NPPSFA; 2.20A
{Pyrococcus horikoshii}
Length = 235
Score = 86.0 bits (213), Expect = 1e-19
Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 9/195 (4%)
Query: 6 FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEA-AIIVEDYGLPCAKHEFVNEVYSMFSD 64
+V + + R + + L + + + E V +
Sbjct: 37 IKDVANAVIEVRNEIKKMRAQASEDPRKVLTGSQEALAGKLKVD---VELVKRATARAIL 93
Query: 65 HLCKVKALPGANRLIKHLSCHGVPMALASN---SHRATIESKISYQHGWNESFSVIVGSD 121
++ + L G ++ + G+ A+ N + + + G E +D
Sbjct: 94 NVDESLVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLE-RFGLMEFIDKTFFAD 152
Query: 122 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRY 180
EV + KP ++F + ++P SL I D+ + GM V + + +
Sbjct: 153 EVLSYKPRKEMFEKVLNSFEVKPEESLHIGDTYAEDYQGARKVGMWAVWINQEGDKVRKL 212
Query: 181 TAADEVINSLLDLRP 195
I S+ +L+
Sbjct: 213 EERGFEIPSIANLKD 227
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center for
structural genomics, MCSG; HET: G1P; 2.00A {Escherichia
coli} SCOP: c.108.1.2
Length = 206
Score = 84.3 bits (209), Expect = 3e-19
Identities = 22/164 (13%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 31 GKTPLEE-AAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPM 89
G+ E A + + LP + +F + ++F P ++ L G +
Sbjct: 57 GEISDEAFAEALCHEMALPLSYEQFSHGWQAVFVA------LRPEVIAIMHKLREQGHRV 110
Query: 90 ALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 149
+ SN++R ++ I S ++ KP I+ + PS ++
Sbjct: 111 VVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVF 170
Query: 150 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 193
+D+ + G+ + + + +
Sbjct: 171 FDDNADNIEGANQLGI----------TSILVKDKTTIPDYFAKV 204
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 84.0 bits (208), Expect = 5e-19
Identities = 32/158 (20%), Positives = 69/158 (43%), Gaps = 7/158 (4%)
Query: 41 IVEDYGLPCAKHEFVNEVYSMFSDHLCK-VKALPGANRLIKHLSCHGVPMALASNSHRAT 99
++ LP ++++ + + ++ +PGA +++ L G + + ++ +
Sbjct: 65 LLRRLDLP-YNPKWISAGVIAYHNTKFAYLREVPGARKVLIRLKELGYELGIITDGNPVK 123
Query: 100 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VV 158
KI + ++ F ++ SD KP P IF +A K N++P +L++ D + +
Sbjct: 124 QWEKI-LRLELDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEALMVGDRLYSDIY 182
Query: 159 AGKAAGMEVVAV---PSLPKQTHRYTAADEVINSLLDL 193
K GM+ V ++ AD I++L L
Sbjct: 183 GAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESL 220
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Aquifex
aeolicus} PDB: 2yy6_A
Length = 222
Score = 83.8 bits (208), Expect = 5e-19
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 13/152 (8%)
Query: 52 HEFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCHGVPMALASN-SHRATIESKIS 105
+F E +F H + K P ++ L G +A+ SN + KI
Sbjct: 60 DKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSK--KIL 117
Query: 106 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 165
+ F +IVG D KPSP L+ + L EP +L++ D+ + AGK AG
Sbjct: 118 DILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGT 177
Query: 166 EVVAVPS--LPKQTHRYTAADEVINSLLDLRP 195
+ + + D ++ DL
Sbjct: 178 KTALALWGYVKLNSQI---PDFTLSRPSDLVK 206
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
struct genomics, PSI-2, protein structure initiative;
HET: MSE; 2.40A {Porphyromonas gingivalis}
Length = 211
Score = 82.1 bits (203), Expect = 2e-18
Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 23/173 (13%)
Query: 31 GKTPLEE-AAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPM 89
G+ EE + G + + + + + +
Sbjct: 55 GRKSEEEFRTELSRYIGKELTYQQVYDALLGFLEE-------ISAEKFDYIDSLRPDYRL 107
Query: 90 ALASNSHRATIESKISYQH-----GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 144
L SN++ ++ +S + + F + S ++ KP+ DIFLE M+P
Sbjct: 108 FLLSNTNPYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIFLEMIADSGMKP 167
Query: 145 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 197
+L I+D V + G T+ + I ++ L E+
Sbjct: 168 EETLFIDDGPANVATAERLGF----------HTYCPDNGENWIPAITRLLREQ 210
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 81.8 bits (203), Expect = 3e-18
Identities = 31/164 (18%), Positives = 60/164 (36%), Gaps = 15/164 (9%)
Query: 14 LVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH-----LC 67
L K+ + + +K VG PL+ + +E Y E + D+ +
Sbjct: 30 LNKFDIQVEDLSSLNKFVGP-PLKTS--FMEYYNFD---EETATVAIDYYRDYFKAKGMF 83
Query: 68 KVKALPGANRLIKHLSCHGVPMALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTG 126
+ K G L+ L +G + +A++ + +I F IVGS
Sbjct: 84 ENKVYDGIEALLSSLKDYGFHLVVATSKPTVFSK--QILEHFKLAFYFDAIVGSSLDGKL 141
Query: 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 170
D+ A + LN++ +++I D V+ + + V
Sbjct: 142 STKEDVIRYAMESLNIKSDDAIMIGDREYDVIGALKNNLPSIGV 185
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP:
c.108.1.6
Length = 243
Score = 81.9 bits (203), Expect = 3e-18
Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 10/151 (6%)
Query: 53 EFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCHGVPMALASN-SHRATIESKISY 106
+ F + + P ++ L G +A+ +N + I
Sbjct: 92 DEFKYFKRQFGFYYGENLCNISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQ--PILT 149
Query: 107 QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 166
G + FS ++G + KP P F + + P L + DS + A +AG
Sbjct: 150 AFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFAAHSAGCA 209
Query: 167 VVAVP--SLPKQTHRYTAADEVINSLLDLRP 195
VV + + D + + D+
Sbjct: 210 VVGLTYGYNYNIPIAQSKPDWIFDDFADILK 240
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 80.8 bits (200), Expect = 7e-18
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 11/152 (7%)
Query: 52 HEFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCHGVPMALASN-SHRATIESKIS 105
VN V +F + K PG L+K+L GV +A+ SN + A
Sbjct: 87 QTEVNRVLEVFKPYYADHCQIKTGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLV-- 144
Query: 106 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 165
+ + SF +G KP+PD+ E K L + + I DS I + + + M
Sbjct: 145 -EELFPGSFDFALGEKSGIRRKPAPDMTSECVKVLGVPRDKCVYIGDSEIDIQTARNSEM 203
Query: 166 EVVAVP--SLPKQTHRYTAADEVINSLLDLRP 195
+ +AV + A ++++ L
Sbjct: 204 DEIAVNWGFRSVPFLQKHGATVIVDTAEKLEE 235
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3,
haloacid dehalogenase-like hydrolase domain containin
structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 78.3 bits (193), Expect = 9e-17
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 7/147 (4%)
Query: 53 EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 112
++Y FS C + L GA ++ G+ +A+ SN +E + G E
Sbjct: 90 PIAEQLYKDFSHP-CTWQVLDGAEDTLRECRTRGLRLAVISNFD-RRLEGILG-GLGLRE 146
Query: 113 SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVP 171
F ++ S+ KP P IF EA + +MEP + + D+ + +A GM V
Sbjct: 147 HFDFVLTSEAAGWPKPDPRIFQEALRLAHMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVV 206
Query: 172 ---SLPKQTHRYTAADEVINSLLDLRP 195
+L + ++ SL L P
Sbjct: 207 GPQALDPVVRDSVPKEHILPSLAHLLP 233
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; 1.90A {Mus
musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Length = 260
Score = 77.5 bits (191), Expect = 1e-16
Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 6/157 (3%)
Query: 41 IVEDYGLPCAKHEFVNEVYSMFSDHLCK-VKALPGANRLIKHLSCHGVPMALASNSHRAT 99
+++ + E Y ++ + + ++ L V + L +N R T
Sbjct: 91 AIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTELR-KEVRLLLLTNGDRQT 149
Query: 100 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VV 158
KI F IV E + KP+P IF L ++P +++ D++ +
Sbjct: 150 QREKI-EACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQ 208
Query: 159 AGKAAGME--VVAVPSLPKQTHRYTAADEVINSLLDL 193
G AG++ V S +++S+L+L
Sbjct: 209 GGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLEL 245
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB:
3i76_A
Length = 238
Score = 75.9 bits (187), Expect = 5e-16
Identities = 30/153 (19%), Positives = 57/153 (37%), Gaps = 7/153 (4%)
Query: 43 EDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIES 102
++YG + Y F + ++ + GA LI +L + + +N T
Sbjct: 79 KEYGYEADGALL-EQKYRRFLEEGHQL--IDGAFDLISNLQ-QQFDLYIVTNGVSHTQYK 134
Query: 103 KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPSSSLVIEDSVIG-VVAG 160
++ G F I S++ KP + F +R+ +L+I DS+ + G
Sbjct: 135 RL-RDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHTLIIGDSLTADIKGG 193
Query: 161 KAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 193
+ AG++ + K I L +L
Sbjct: 194 QLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEEL 226
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 75.3 bits (186), Expect = 6e-16
Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 15/164 (9%)
Query: 14 LVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH-----LCK 68
L +G + D + +G PL + E Y + E + ++ + +
Sbjct: 55 LNSFGIKEDLENLDQFIGP-PLHDT--FKEYYKFE---DKKAKEAVEKYREYFADKGIFE 108
Query: 69 VKALPGANRLIKHLSCHGVPMALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGK 127
K +++ L +G + +A++ I + F I GS+ T
Sbjct: 109 NKIYENMKEILEMLYKNGKILLVATSKPTVFAE--TILRYFDIDRYFKYIAGSNLDGTRV 166
Query: 128 PSPDIFLEAAKRLNM-EPSSSLVIEDSVIGVVAGKAAGMEVVAV 170
++ N+ + +++ D ++ K G++ + V
Sbjct: 167 NKNEVIQYVLDLCNVKDKDKVIMVGDRKYDIIGAKKIGIDSIGV 210
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 73.2 bits (180), Expect = 2e-15
Identities = 25/189 (13%), Positives = 63/189 (33%), Gaps = 17/189 (8%)
Query: 6 FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 65
+V + + G E + + G+ V E+
Sbjct: 38 LRKVFRAYAKAMGMINYPDEDGLEH-----VDPKDFLYILGIY-PSERLVKELKEADIRD 91
Query: 66 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT 125
++ L +G +AL SN+ +++ + + + F + S E++
Sbjct: 92 GE-AFLYDDTLEFLEGLKSNGYKLALVSNAS-PRVKTLLE-KFDLKKYFDALALSYEIKA 148
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAAD 184
KP+P IF A ++ ++ + D + K + ++ + + + Y
Sbjct: 149 VKPNPKIFGFALAKVGYP---AVHVGDIYELDYIGAKRSYVDPILL----DRYDFYPDVR 201
Query: 185 EVINSLLDL 193
+ + +L +
Sbjct: 202 DRVKNLREA 210
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola
haloacid dehalogenase-like, PSI; 1.74A {Streptococcus
pneumoniae} SCOP: c.108.1.6
Length = 210
Score = 71.0 bits (175), Expect = 1e-14
Identities = 23/164 (14%), Positives = 59/164 (35%), Gaps = 20/164 (12%)
Query: 14 LVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH-----LC 67
+ G + +G PLE + L + ++E ++ + +
Sbjct: 30 FKELGVPSPDAKTIRGFMGP-PLESS---FATC-LS---KDQISEAVQIYRSYYKAKGIY 81
Query: 68 KVKALPGANRLIKHLSCHGVPMALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTG 126
+ + P L++ LS P+ + + ++ + F I GS
Sbjct: 82 EAQLFPQIIDLLEELS-SSYPLYITTTKDTSTAQ--DMAKNLEIHHFFDGIYGSSPE--A 136
Query: 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 170
D+ +A + + P +++I D+ ++ + G++ +A+
Sbjct: 137 PHKADVIHQALQTHQLAPEQAIIIGDTKFDMLGARETGIQKLAI 180
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, unknown function;
1.59A {Pyrococcus horikoshii} PDB: 1x42_A
Length = 234
Score = 70.5 bits (173), Expect = 3e-14
Identities = 27/190 (14%), Positives = 65/190 (34%), Gaps = 7/190 (3%)
Query: 6 FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 65
+L + + + PL + V ++ + +
Sbjct: 38 PKTLLDEYEKLTREAFSNYAGKPY---RPLRDILEEVMRKLAEKYGFKYPENFWEISLRM 94
Query: 66 LCKVKAL-PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 124
+ L P ++K L + + ++S + + G + F I S+E
Sbjct: 95 SQRYGELYPEVVEVLKSLK-GKYHVGMITDSDTEQAMAFL-DALGIKDLFDSITTSEEAG 152
Query: 125 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAA 183
KP P IF A K+ ++ ++ + D+ + K GM + + ++ +
Sbjct: 153 FFKPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKC 212
Query: 184 DEVINSLLDL 193
D +++ L ++
Sbjct: 213 DFIVSDLREV 222
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding
site, enzyme function initiativ; 1.65A {Bacteroides
thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Length = 229
Score = 69.5 bits (170), Expect = 6e-14
Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 23/166 (13%)
Query: 31 GKTPLEEA-AIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPM 89
G E I E G + + S D +P + +
Sbjct: 78 GLITPAEFRDGIREMMGKMVSDKQIDAAWNSFLVD-------IPTYKLDLLLKLREKYVV 130
Query: 90 ALASNSHRATIE-----SKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 144
L SN++ + + + F S E++ KP P+IF + ++P
Sbjct: 131 YLLSNTNDIHWKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEPEIFKAVTEDAGIDP 190
Query: 145 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL 190
+ I+DS I + G+ T+ A ++ +
Sbjct: 191 KETFFIDDSEINCKVAQELGI----------STYTPKAGEDWSHLF 226
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2,
protein structure initiative; 1.70A {Bacteroides
thetaiotaomicron}
Length = 240
Score = 67.4 bits (165), Expect = 3e-13
Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 5/144 (3%)
Query: 52 HEFVNEVYSMFSDHLC-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 110
F + K +P A ++++L+ + + SN R K+ G
Sbjct: 88 EALAERFSEDFFAIIPTKSGLMPHAKEVLEYLA-PQYNLYILSNGFRELQSRKMR-SAGV 145
Query: 111 NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVA 169
+ F I+ S+++ KP P+IF A E SL+I DS + GM
Sbjct: 146 DRYFKKIILSEDLGVLKPRPEIFHFALSATQSELRESLMIGDSWEADITGAHGVGMHQAF 205
Query: 170 VPSLPKQTHRYTAADEVINSLLDL 193
+ + I+SL +L
Sbjct: 206 YNVTERTVFPFQ-PTYHIHSLKEL 228
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP:
c.108.1.22 PDB: 1zs9_A
Length = 261
Score = 67.9 bits (165), Expect = 4e-13
Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 6/136 (4%)
Query: 62 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISY--QHGWNESFSVIVG 119
F+ K + ++ G+ + + S+ + + + E
Sbjct: 122 FTAGRMKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHF- 180
Query: 120 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV--PSLPKQT 177
D K + + + A + ++ L + D A + A + V V P T
Sbjct: 181 -DTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLT 239
Query: 178 HRYTAADEVINSLLDL 193
+I S +L
Sbjct: 240 DDEKTYYSLITSFSEL 255
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 66.4 bits (161), Expect = 2e-12
Identities = 26/177 (14%), Positives = 50/177 (28%), Gaps = 33/177 (18%)
Query: 51 KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 110
K + + ++ + L+ L G + +A+ G
Sbjct: 196 KKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFE-NLGL 254
Query: 111 NESFSV--IVGSDEVRT-----------GKPSPDIFLEAAKRLN--------------ME 143
F I + +V GKP+P ++ A N +
Sbjct: 255 LPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVN 314
Query: 144 PSSSLVIEDSVIGVVAGKAAGMEVVAV-----PSLPKQTHRYTAADEVINSLLDLRP 195
++ DS+ +++ + G + AD VIN L +LR
Sbjct: 315 KDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRG 371
>3ib6_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.20A {Listeria
monocytogenes}
Length = 189
Score = 62.9 bits (153), Expect = 6e-12
Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 18/143 (12%)
Query: 68 KVKALPGANRLIKHLSCHGVPMALASN---SHRATIESKISYQHGWNESFSVIVGSD--- 121
+V A ++ + G A+ SN S I+ ++ G + F I S+
Sbjct: 32 EVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLT-NFGIIDYFDFIYASNSEL 90
Query: 122 -EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVV---------AV 170
+ KP IF L ++ + ++++ ++ ++ AG+ +
Sbjct: 91 QPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQD 150
Query: 171 PSLPKQTHRYTAADEVINSLLDL 193
LP + + + +
Sbjct: 151 ERLPLVAPPFVIPVWDLADVPEA 173
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP:
c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Length = 232
Score = 63.3 bits (154), Expect = 9e-12
Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 4/152 (2%)
Query: 44 DYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESK 103
+ + S D ++ ++ L G+ +A+ SN +I++
Sbjct: 69 RFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAV 128
Query: 104 ISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 163
+S+ G + F ++ D V+ KP ++ A + L ++ S+ L + + +
Sbjct: 129 VSH-AGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILFVASNAWDATGARYF 187
Query: 164 GMEVVAV--PSLPKQTHRYTAADEVINSLLDL 193
G + + D + SL +
Sbjct: 188 GFPTCWINRTGNVFEEMGQ-TPDWEVTSLRAV 218
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold,
hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Length = 240
Score = 59.5 bits (144), Expect = 2e-10
Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 2/151 (1%)
Query: 44 DYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESK 103
+ L E + ++ A P A ++ L G +A+ SN + +++
Sbjct: 79 TFALRTYHLEDRKGLKDRLMSAYKELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAA 138
Query: 104 ISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 163
+ + + +D+++ KP P I+ A RL + P+ + + +
Sbjct: 139 LKA-SKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKF 197
Query: 164 GMEVVAVP-SLPKQTHRYTAADEVINSLLDL 193
G V + + + +NSL +L
Sbjct: 198 GFNTVRINRQGNPPEYEFAPLKHQVNSLSEL 228
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter
autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A*
1aq6_A
Length = 253
Score = 59.5 bits (144), Expect = 2e-10
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 81 HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL 140
+ A+ SN +++ ++ G +SF ++ D R KP PD + + L
Sbjct: 102 LAELAPLKRAILSNGAPDMLQALVAN-AGLTDSFDAVISVDAKRVFKPHPDSYALVEEVL 160
Query: 141 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAV-----PSLPKQTHRYTAADEVINSLLDLRP 195
+ P+ L + + V K G V V +L ++ T A + L +R
Sbjct: 161 GVTPAEVLFVSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMRE 220
Query: 196 EKWGLPP 202
E + P
Sbjct: 221 ETYAEAP 227
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST
genomics, joint center for structural genomics, JCSG;
1.81A {Xanthomonas campestris PV}
Length = 251
Score = 56.6 bits (136), Expect = 2e-09
Identities = 26/196 (13%), Positives = 55/196 (28%), Gaps = 20/196 (10%)
Query: 6 FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 65
+ L + K + K + E AI + + + + + E+ H
Sbjct: 53 MQQHLLAVERRNLKIFGYGAKGMT---LSMIETAIELTEARIEARDIQRIVEIGRATLQH 109
Query: 66 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT 125
V+ + G + ++ + L + E KI Q G ++ F I
Sbjct: 110 --PVEVIAGVREAVAAIA-ADYAVVLITKGDLFHQEQKIE-QSGLSDLFPRIEVV----- 160
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVI-GVVAGKAAGMEVVAVPSLPKQTHRYTAAD 184
+ P + ++ ++I +S+ V A G + P H
Sbjct: 161 SEKDPQTYARVLSEFDLPAERFVMIGNSLRSDVEPVLAIGGWGIYTPYAVTWAHEQDHGV 220
Query: 185 EV-------INSLLDL 193
+
Sbjct: 221 AADEPRLREVPDPSGW 236
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU
sensitivity of transcription elongation II; 1.70A
{Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Length = 282
Score = 53.6 bits (128), Expect = 2e-08
Identities = 22/153 (14%), Positives = 43/153 (28%), Gaps = 9/153 (5%)
Query: 51 KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMAL-----ASNSHRATIESKIS 105
N + +K ++ L G L A +H +
Sbjct: 123 NALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLG 182
Query: 106 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSVIGVVAGKAAG 164
++ + KP F +A K + + I+DS + G G
Sbjct: 183 IADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLG 242
Query: 165 MEVVAV---PSLPKQTHRYTAADEVINSLLDLR 194
M+ + + + VI+ +L+L
Sbjct: 243 MKTCIHLVENEVNEILGQTPEGAIVISDILELP 275
>2p11_A Hypothetical protein; putative haloacid dehalogenase-like
hydrolase, structural GE joint center for structural
genomics, JCSG; 2.20A {Burkholderia xenovorans}
Length = 231
Score = 53.3 bits (127), Expect = 2e-08
Identities = 31/202 (15%), Positives = 71/202 (35%), Gaps = 20/202 (9%)
Query: 3 DGMFSEVLKTFLVKYGKEWDGR---EKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY 59
D + +++ + ++G + R + + + ++ Y L + + +
Sbjct: 26 DHVLADLRAHMMREFGAQNSARYWEIFETLRTELGYADYLGALQRYRLEQPRDTRLLLMS 85
Query: 60 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG 119
S D+ + PGA ++HL G P + S+ KI+ + G +
Sbjct: 86 SFLIDYPFASRVYPGALNALRHLGARG-PTVILSDGDVVFQPRKIA-RSGLWDEV----- 138
Query: 120 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA-GMEVVAV-------P 171
+ ++ L+ ++++D + + A K A G + V
Sbjct: 139 -EGRVLIYIHKELMLDQVMEC-YPARHYVMVDDKLRILAAMKKAWGARLTTVFPRQGHYA 196
Query: 172 SLPKQTHRYTAADEVINSLLDL 193
PK+ + AD + + DL
Sbjct: 197 FDPKEISSHPPADVTVERIGDL 218
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily,
GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase;
HET: FX1; 1.68A {Bordetella bronchiseptica}
Length = 179
Score = 48.4 bits (116), Expect = 5e-07
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS----LPKQTHRYTA 182
KP P ++ + A+R +++ + + DS+ + A AG V +
Sbjct: 101 KPLPGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLPE 160
Query: 183 ADEVINSLLD 192
V L
Sbjct: 161 GTRVCEDLAA 170
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein,
hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19
PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Length = 211
Score = 48.8 bits (117), Expect = 5e-07
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME-VVAVPS-LPKQTHRYTAAD 184
KP P + L A L+++ ++S ++ D + + A AA + V V + P AAD
Sbjct: 131 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAAD 190
Query: 185 EVINSLLDL 193
V+NSL DL
Sbjct: 191 WVLNSLADL 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 9e-07
Identities = 58/359 (16%), Positives = 103/359 (28%), Gaps = 140/359 (38%)
Query: 4 GMFSEVLKTFLVKYGKEW-DGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 62
G F +VL L ++ + +G + H + K E + K + + + Y
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL--------VKTKELIKNY--- 126
Query: 63 SDHLCKVKALPGANRLIKHLSCHGVPMAL--ASNSHRATIESKISY-----QHGWNES-F 114
+ A A R S AL A A + Q G + F
Sbjct: 127 ------ITARIMAKRPFDKKS----NSALFRAVGEGNAQL-----VAIFGGQ-GNTDDYF 170
Query: 115 SVIVGSDEVR----TGKPSPDIFLE-AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169
+E+R T ++ +A+ L+
Sbjct: 171 ------EELRDLYQTYHVLVGDLIKFSAETLS---------------------------- 196
Query: 170 VPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEG--TLPSEPWYIGGPV-VKGL 226
L + T A++V L++ +W+E P + + + P+ +
Sbjct: 197 --ELIRTTLD---AEKVFTQGLNI----------LEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 227 G--------RGSKVLGIPTANLSTEGYSDVLSEHPSGVYFGWAGLSTR--GVYKMV---M 273
G +K+LG L L G + G+ V
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELR-----SYLK-----------GATGHSQGLVTAVAIAE 285
Query: 274 SIGWNPYFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEANFPSLETLIAKIHED 332
+ W +F + K I L F+ +G R +P+ +L I ED
Sbjct: 286 TDSWESFFVSVRKAIT-VL-------FF--------IGV-RCYEAYPNT-SLPPSILED 326
Score = 37.0 bits (85), Expect = 0.012
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 37/117 (31%)
Query: 240 LSTEGYS--DVLSEHPSG--VYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHE 295
T G+S D++ +P ++FG G + + + ++ + D KT + + E
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFG--GEKGKRIRENYSAMIFETIVDGKLKTEK--IFKE 1709
Query: 296 FDED-----FY--DEELH--------LVIVGY-----IRPEANFP--------SL-E 323
+E F L L ++ ++ + P SL E
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Score = 35.8 bits (82), Expect = 0.024
Identities = 39/210 (18%), Positives = 65/210 (30%), Gaps = 81/210 (38%)
Query: 62 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD 121
+ L K KA G ++ +P S R K+ + + F +
Sbjct: 389 LNLTLRKAKAPSGLDQ-------SRIPF-----SER-----KLKFSN----RFLPV---- 423
Query: 122 EVRTGKP--SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR 179
P S L + P+S L+ +D V V+ A + +P
Sbjct: 424 ----ASPFHSH---L-------LVPASDLINKDLVKNNVSFNAKDI---QIPVY----DT 462
Query: 180 YTAAD------EVINSLLDL---RPEKWGLPPFQDWIEGTLPSEPWYI--GGP-VVKGL- 226
+ +D + ++D P KW E T + +I GP GL
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKW---------ETTTQFKATHILDFGPGGASGLG 513
Query: 227 --------GRGSKVL--GIPTANLSTE-GY 245
G G +V+ G N + G+
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 35.8 bits (82), Expect = 0.026
Identities = 51/293 (17%), Positives = 87/293 (29%), Gaps = 95/293 (32%)
Query: 88 PMALASNSHRATIESKISYQHGWN-----ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 142
P+ L+ S + + + E F+ I+ P P A
Sbjct: 8 PLTLSHGSLEHVLL--VPTASFFIASQLQEQFNKIL---------PEPTEGFAADD---- 52
Query: 143 EPSSSLVIEDSVIGVVA-----GKAAGMEVVAVPSLPKQTHRYTAADEVINSL---LDLR 194
EP++ + +G V+ K + V L + + Y ++ I++L L
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHALAAKLLQE 111
Query: 195 PEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLSEHPS 254
+ L ++ I+ YI + P S S +
Sbjct: 112 NDT-TLVKTKELIKN-------YI---------TARIMAKRPFDKKSN---SALFRAVGE 151
Query: 255 G---VY--FGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDE--DFYDEELHL 307
G + FG G +G + + F+E D Y L
Sbjct: 152 GNAQLVAIFG--G---QG-------------------NTDDY----FEELRDLYQTYHVL 183
Query: 308 VIVGYIRPEANFPSLETLIAKIHEDRKVAERALDL------PLYSKYRDDPYL 354
V I+ A +L LI + KV + L++ P S D YL
Sbjct: 184 VG-DLIKFSAE--TLSELIRTTLDAEKVFTQGLNILEWLENP--SNTPDKDYL 231
Score = 33.5 bits (76), Expect = 0.12
Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 47/151 (31%)
Query: 35 LEEAAIIVEDYGLPCAKH---EF-----VNEVYSMFSDHLCKVKALPGANRLIKHL---- 82
L+ +I D A H E+ + +V S L +V G ++
Sbjct: 1747 LKSKGLIPADATF--AGHSLGEYAALASLADVMS-IES-LVEVVFYRG--MTMQVAVPRD 1800
Query: 83 ----SCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK 138
S +G+ +A+ A+ E+ +V RTG +E
Sbjct: 1801 ELGRSNYGM-IAINPGRVAASFS---------QEALQYVVERVGKRTGW-----LVEIVN 1845
Query: 139 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 169
N +E+ V AG ++ V
Sbjct: 1846 -YN--------VENQQY-VAAGDLRALDTVT 1866
Score = 28.1 bits (62), Expect = 5.6
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 23/74 (31%)
Query: 292 LLHEFDEDF-YDEELHLVIVGYIRPEANFPSLETLIAKIHEDRKVAERALDLPLYSKYR- 349
L EF+ + ++H L AK+ ++ + +
Sbjct: 87 CLTEFENCYLEGNDIH-----------------ALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 350 ----DDPYLKITSS 359
P+ K ++S
Sbjct: 130 RIMAKRPFDKKSNS 143
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 49.5 bits (118), Expect = 9e-07
Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 8/153 (5%)
Query: 31 GKTPLEEAAIIVEDYGLPCAKHEFVN-----EVYSMFSDHLCKVKALPGANRLIKHLSCH 85
G+ L + ++E+ C++ V + +F + K + L
Sbjct: 56 GEITLSQWIPLMEENCRKCSETAKVCLPKNFSIKEIFDKAISARKINRPMLQAALMLRKK 115
Query: 86 GVPMALASNS---HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 142
G A+ +N+ RA + F ++ S +V KP P I+ L
Sbjct: 116 GFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKA 175
Query: 143 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 175
PS + ++D + + GM + V
Sbjct: 176 SPSEVVFLDDIGANLKPARDLGMVTILVQDTDT 208
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 1e-06
Identities = 60/411 (14%), Positives = 117/411 (28%), Gaps = 116/411 (28%)
Query: 31 GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM-FSDHLCKVKALPGANRLIKHLSCHGVPM 89
GKT + A + Y + C +++ + + L +L+ + +
Sbjct: 162 GKTWV--ALDVCLSYKVQCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 90 ALASNSHRATIESKI----------SYQHG-------WN----ESFSV---IVGSDEVRT 125
+ S++ + I S Y++ N +F++ I+ + T
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL----LTT 272
Query: 126 GKPSPDIFLEAA--KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAA 183
FL AA ++++ S + D V ++ K +P T+ +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTNPRRLS 331
Query: 184 DEVINSLLDLRPEKW------GLPPFQDWIEGTL----PSE--PWY-----------IGG 220
+I + W IE +L P+E + I
Sbjct: 332 --IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-- 387
Query: 221 PVVKGLGRGSKVLGIPTANLSTEGYSDVLSE-HPSGVYFGWAGLSTRGVYKMVMSIGWNP 279
P + +L + ++ V+++ H + ST + +
Sbjct: 388 P--------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-------- 431
Query: 280 YFDNAEKTIEPWLLH-----------EFD-EDFYDEEL----------HLVIVGYIRPEA 317
Y + K + LH FD +D L HL + +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 318 NFP----SLETLIAKI-HEDRKVAERA------LDLPLYSKY--RDDPYLK 355
F L KI H+ L Y Y +DP +
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Score = 44.8 bits (105), Expect = 4e-05
Identities = 44/348 (12%), Positives = 98/348 (28%), Gaps = 115/348 (33%)
Query: 6 FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH 65
+ ++L F + +D ++ V+D K E DH
Sbjct: 18 YKDILSVFEDAFVDNFDCKD----------------VQDM----PKSILSKEEI----DH 53
Query: 66 LCKVK-ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR 124
+ K A+ G RL L + +E + + + ++ +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYKF------LMSPIKTE 101
Query: 125 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD 184
+PS + +R + + + + +V R
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-----------------------SRLQPYL 138
Query: 185 EVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKG-LGRGSKVLGIPTANLSTE 243
++ +LL+LRP K + ++ G LG G + +
Sbjct: 139 KLRQALLELRPAK-------------------NV---LIDGVLGSGKTWVALDVCL---- 172
Query: 244 GYSDVLSEHPSGVYFGWAGLSTRGVYKMVMSIGWNPYFDNAEKTIEPWLLHEFDEDFYDE 303
V + ++ W L + V+ + LL++ D ++
Sbjct: 173 -SYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQK-------------LLYQIDPNWTSR 216
Query: 304 ELHLVIVGYIRPEANFPSLETLIAKIHEDRKVAERALDLPLYSKYRDD 351
H + S++ + ++ + + E L L L +
Sbjct: 217 SDHS-----SNIKLRIHSIQAELRRLLKSKPY-ENCL-LVL-----LN 252
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic
process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB:
2w11_A
Length = 201
Score = 46.0 bits (109), Expect = 4e-06
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 6/111 (5%)
Query: 85 HGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 144
+ SN ++ + ++G F I ++ V+ KPSP ++ +
Sbjct: 87 EIAEVYALSNGSINEVKQHLE-RNGLLRYFKGIFSAESVKEYKPSPKVYKYFLDSIG--A 143
Query: 145 SSSLVIEDSVIGVVAGKAAGMEVVAV--PSLPKQTHRYTAADEVINSLLDL 193
+ ++ + V+ K AGM + V + D ++N +L
Sbjct: 144 KEAFLVSSNAFDVIGAKNAGMRSIFVNRKNTIVD-PIGGKPDVIVNDFKEL 193
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 44.8 bits (107), Expect = 1e-05
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAAD 184
GKP FLEA + + P +++I D V + GM + V +T +Y AAD
Sbjct: 178 GKPEKTFFLEALRDADCAPEEAVMIGDDCRDDVDGAQNIGMLGILV-----KTGKYKAAD 232
Query: 185 E---------VINSLLDL 193
E S
Sbjct: 233 EEKINPPPYLTCESFPHA 250
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos
phosphatase; hydrolase; 1.92A {Homo sapiens}
Length = 271
Score = 44.5 bits (106), Expect = 2e-05
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAAD 184
GKPSP+ F A + + +E +++I D ++G V + GM + V +T ++ +D
Sbjct: 189 GKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQV-----RTGKFRPSD 243
Query: 185 E---------VINSLLDL 193
E +++L +
Sbjct: 244 EHHPEVKADGYVDNLAEA 261
>2o2x_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP:
c.108.1.19
Length = 218
Score = 42.7 bits (101), Expect = 6e-05
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV-----PSLPKQTHRYT 181
KP+P + +EA KRL ++ SL++ D + + AGK AG+ + P R
Sbjct: 137 KPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEAAVQPGFAIRPL 196
Query: 182 AADEVINSLLD 192
+ LL
Sbjct: 197 RDSSELGDLLA 207
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein),
struct genomics, PSI, protein structure initiative;
2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Length = 253
Score = 42.1 bits (98), Expect = 1e-04
Identities = 8/67 (11%), Positives = 19/67 (28%)
Query: 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEV 186
K + + + + S L + D+ + + A G+ +V
Sbjct: 187 KTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQV 246
Query: 187 INSLLDL 193
+ L
Sbjct: 247 YKNFETL 253
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein,
struc genomics, PSI, protein structure initiative; 2.80A
{Enterococcus faecalis} SCOP: c.108.1.14
Length = 264
Score = 39.8 bits (94), Expect = 7e-04
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 15/81 (18%)
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 175
GKP I A L +E +++ D+ I +G G++ + V S +P
Sbjct: 182 GKPKAIIMERAIAHLGVEKEQVIMVGDNYETDI--QSGIQNGIDSLLVTSGFTPKSAVPT 239
Query: 176 QTHRYTAADEVINSLLDLRPE 196
V++SL + E
Sbjct: 240 LPTP---PTYVVDSLDEWTFE 257
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola
phosphate phosphatase, bifunctional enzyme structural
genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB:
2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Length = 176
Score = 38.7 bits (91), Expect = 0.001
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 127 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 165
KP + M+ ++S VI D + + G+
Sbjct: 116 KPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGI 154
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC,
protein structure initia YORK SGX research center for
structural genomics; 1.60A {Bacillus subtilis}
Length = 266
Score = 39.4 bits (93), Expect = 0.001
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 175
GKP I +A + L + S +L++ D+ I +AG AGM+ + V + +
Sbjct: 182 GKPESIIMEQAMRVLGTDVSETLMVGDNYATDI--MAGINAGMDTLLVHTGVTKREHMTD 239
Query: 176 QTHRYTAADEVINSLLDLRPE 196
+ I+SL + P
Sbjct: 240 DMEK---PTHAIDSLTEWIPY 257
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP
phosphatase, carbohydrate metabolism, hydrolase; 1.8A
{Escherichia coli} SCOP: c.108.1.14
Length = 250
Score = 38.2 bits (90), Expect = 0.002
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 175
GKPSP I A ++ ++++ D++ I +AG AG+E + V S +
Sbjct: 175 GKPSPWIIRAALNKMQAHSEETVIVGDNLRTDI--LAGFQAGLETILVLSGVSSLDDIDS 232
Query: 176 QTHRYTAADEVINSLLDL 193
R + S+ ++
Sbjct: 233 MPFR---PSWIYPSVAEI 247
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus}
Length = 268
Score = 37.9 bits (89), Expect = 0.003
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAV 170
GKPS I EA L ++ V+ D + + AGKA G E V V
Sbjct: 186 GKPSEVIMREALDILGLDAKDVAVVGDQIDVDV--AAGKAIGAETVLV 231
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
unknown function, HAD superfamily hydro PSI-2; 1.55A
{Streptococcus agalactiae serogroup V} PDB: 1ys9_A
1wvi_A 1ydf_A
Length = 264
Score = 37.9 bits (89), Expect = 0.003
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 175
GKP+ I +A + LN+ + ++++ D+ I +AG ++ + V + +P
Sbjct: 181 GKPNAIIMNKALEILNIPRNQAVMVGDNYLTDI--MAGINNDIDTLLVTTGFTTVEEVPD 238
Query: 176 QTHRYTAADEVINSLLDLRPEK 197
+ V+ SL + +
Sbjct: 239 LPIQ---PSYVLASLDEWTFNE 257
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG,
protein structure initiative, joint center for
structural G hydrolase; 2.40A {Thermotoga maritima}
SCOP: c.108.1.14 PDB: 1pw5_A*
Length = 271
Score = 37.1 bits (87), Expect = 0.005
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 175
GKP+P + +++ + ++ D + + GK AG+ + V + L +
Sbjct: 194 GKPNPLVVDVISEKFGVPKERMAMVGDRLYTDV--KLGKNAGIVSILVLTGETTPEDLER 251
Query: 176 QTHRYTAADEVINSLLDLRP 195
+ D V +L +L
Sbjct: 252 AETK---PDFVFKNLGELAK 268
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 36.1 bits (84), Expect = 0.011
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS---LPKQTHR 179
GKPSP +F + +++P+ +L++ D + I + G GM V + ++
Sbjct: 214 GKPSPYMFECITENFSIDPARTLMVGDRLETDI--LFGHRCGMTTVLTLTGVSRLEEAQA 271
Query: 180 YTAA-------DEVINSLLDLRP 195
Y AA + S+ DL
Sbjct: 272 YLAAGQHDLVPHYYVESIADLTE 294
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD
superfamily, structural genom riken structural
genomics/proteomics initiative; 1.85A {Pyrococcus
horikoshii}
Length = 263
Score = 32.1 bits (74), Expect = 0.22
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 17/80 (21%)
Query: 126 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 175
GKP+ ++ + ++ D + I K GM+ + V + + K
Sbjct: 186 GKPNEPMYEVVREMFP--GEELWMVGDRLDTDI--AFAKKFGMKAIMVLTGVSSLEDIKK 241
Query: 176 QTHRYTAADEVINSLLDLRP 195
++ D V+ S+ +L
Sbjct: 242 SEYK---PDLVLPSVYELID 258
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG,
structural genomics, midwest center for structur
genomics; 1.60A {Porphyromonas gingivalis}
Length = 122
Score = 29.8 bits (67), Expect = 0.64
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 280 YFDNAEKTIEPWLLHEFDEDFYDEELHLVIVGYIRPEAN 318
YF + + E +D+ +EE+ LV + ++ AN
Sbjct: 84 YFKESTTDSLEEAMQELGKDYSEEEIRLVRIKFLSEMAN 122
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 30.0 bits (68), Expect = 1.7
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 276 GWNPYFDNAEKTIEPWLLHEFDE-DFY---DEEL 305
W+ PWLL FD+ +FY +EEL
Sbjct: 1053 AWDKLVIGDHPIDHPWLLTPFDQVEFYPVTEEEL 1086
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1,
possible sugar phosphatase, structural genomics; HET:
MSE EPE; 2.10A {Cytophaga hutchinsonii}
Length = 284
Score = 29.1 bits (66), Expect = 1.8
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 126 GKPSPDIFLEAAKRL----NMEPSSSLVIEDSV---IGVVAGKAAGMEVVAV 170
GKP +F+ A L + L++ D++ I + G G++ V
Sbjct: 203 GKPDSQMFMFAYDMLRQKMEISKREILMVGDTLHTDI--LGGNKFGLDTALV 252
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 29.1 bits (66), Expect = 1.9
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPD 131
GA L+ L + S + +FS ++ ++ G +
Sbjct: 78 EGALELVSALKEKNYKVVCFSGGFDLATN-HYRDLLHLDAAFSNTLIVENDALNGLVTGH 136
Query: 132 I---------FLEAAKRLNMEPSSSLVIED 152
+ L + LN+ +++LV+ D
Sbjct: 137 MMFSHSKGEMLLVLQRLLNISKTNTLVVGD 166
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm,
protein binding; 2.50A {Mus musculus}
Length = 317
Score = 28.8 bits (64), Expect = 3.0
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 105 SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 155
S+ + W+ S I+G +VRT + D+F K+ +++ +
Sbjct: 260 SFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIH 310
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 28.6 bits (64), Expect = 3.3
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPD 131
P L+ L G +A+AS + + Q + + S + TG+ +
Sbjct: 181 PELPELVATLHAFGWKVAIASGGFTYFSD-YLKEQLSLDYAQSNTLEIVSGKLTGQVLGE 239
Query: 132 I---------FLEAAKRLNMEPSSSLVIED 152
+ L A++ ++E +++ + D
Sbjct: 240 VVSAQTKADILLTLAQQYDVEIHNTVAVGD 269
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase,
RNR, radical enzyme, split SIGN metallocofactor; 1.36A
{Corynebacterium ammoniagenes} PDB: 1uzr_A*
Length = 296
Score = 28.5 bits (64), Expect = 3.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 270 KMVMSIGWNPYFDNAEKTIEPWLLH 294
K + ++G+ F E + P +L
Sbjct: 269 KALNNLGYEGLFPTDETKVSPAILS 293
>2bhg_A Foot-and-mouth disease virus 3C protease; chymotrypsin-like
cysteine protease, capsid protein, core protein; 1.9A
{Foot-and-mouth disease virus} SCOP: b.47.1.4 PDB:
2j92_A 2wv4_A 2wv5_A
Length = 209
Score = 28.1 bits (62), Expect = 4.1
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 202 PFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTANLSTEGYSDVLS 250
+ Y GG V+ G + ++G +A + GY +S
Sbjct: 148 TMPGLFAYKAATRAGYAGGAVLAKDGADTFIVGTHSAGGNGVGYCSCVS 196
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 28.1 bits (63), Expect = 4.5
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 30 VGKTPLEEAAIIVEDYGLPC---AKHEFVN 56
+G TP+ I + +GL C AK EF N
Sbjct: 106 IGDTPMVRINKIGKKFGLKCELLAKCEFFN 135
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 27.8 bits (62), Expect = 6.5
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 73 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPD 131
PGA ++ L G + S R IE ++ + + + + D TG+
Sbjct: 259 PGARTTLRTLRRLGYACGVVSGGFRRIIE-PLAEELMLDYVAANELEIVDGTLTGRVVGP 317
Query: 132 I---------FLEAAKRLNMEPSSSLVIED 152
I E A+R + + ++ + D
Sbjct: 318 IIDRAGKATALREFAQRAGVPMAQTVAVGD 347
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 27.4 bits (61), Expect = 6.6
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 73 PGANRLIKHLSCHGVPMALASNSHRATIE 101
G + ++ H +P + S +
Sbjct: 80 EGFREFVAFINEHEIPFYVISGGMDFFVY 108
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome
condensation, condensin, non-SMC subunit, kleisin,
calcium, cell cycle, cell division; 2.90A {Escherichia
coli} PDB: 3rpu_A
Length = 440
Score = 27.7 bits (61), Expect = 7.0
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 188 NSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIG 219
+ LLD+R E+ L + + G LP + Y
Sbjct: 321 DRLLDMRDEEMALRD--EEVTGELPEDLEYEE 350
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural
genomics, joint center for structural genomics; HET:
UNL; 1.97A {Pseudomonas aeruginosa}
Length = 310
Score = 27.5 bits (61), Expect = 7.3
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 156 GVVAGKAAGMEVVAVPSLPKQTHRYTA-----ADEVINSLLDLRPEKWGLP-PFQD 205
+ A A E+ A Y + D I+SL D+ L D
Sbjct: 68 AMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGD 123
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D,
NESG, structural genomics, PSI-2; 2.40A {Synechococcus
elongatus pcc 6301}
Length = 161
Score = 27.0 bits (60), Expect = 7.4
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 232 VLGIPTANLSTEGY-------SDVLSEHPSGVY--FGWAGLSTRGVYKMVMSIGWNPYFD 282
VLG P + S + ++ G++ +G + ++G + F
Sbjct: 56 VLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDSYGGDDEPIDALLAQFRNLGLHTAFP 115
Query: 283 NAE 285
Sbjct: 116 PIR 118
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate,
lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster}
PDB: 3pc2_A* 3pc4_A*
Length = 527
Score = 27.3 bits (61), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 30 VGKTPLEEAAIIVEDYGLPC---AKHEFVN 56
+G TPL + I G+ C AK EF+N
Sbjct: 58 IGCTPLVKLNNIPASDGIECEMYAKCEFLN 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.414
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,902,003
Number of extensions: 373364
Number of successful extensions: 1054
Number of sequences better than 10.0: 1
Number of HSP's gapped: 986
Number of HSP's successfully gapped: 103
Length of query: 362
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,049,298
Effective search space: 1081162566
Effective search space used: 1081162566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)