BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017996
         (362 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A0LTM4|MURC_ACIC1 UDP-N-acetylmuramate--L-alanine ligase OS=Acidothermus
           cellulolyticus (strain ATCC 43068 / 11B) GN=murC PE=3
           SV=1
          Length = 477

 Score = 36.2 bits (82), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 89  IPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGEGALAGM---PLQLAGT 145
           +P   PE+ V R   L  L R  AL+    G+R  V V G+ G+     M    LQ  G 
Sbjct: 87  VPPTTPELAVARERGLPVLPRAAALASVMAGRR-GVAVAGTHGKTTTTSMVVRALQRCGA 145

Query: 146 RKILEFMDWGDYGAKGTFVE--IGSIGANEVDEQDDMFILVAPQNAV 190
                F    D G  G+      GSI   E DE D+ F+L+    AV
Sbjct: 146 DP--SFAIGADLGEPGSNAHDGTGSIFVAEADESDESFLLLPFHAAV 190


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,624,968
Number of Sequences: 539616
Number of extensions: 5827767
Number of successful extensions: 13390
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 13387
Number of HSP's gapped (non-prelim): 9
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)