Query 017996
Match_columns 362
No_of_seqs 130 out of 173
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02842 nucleotide kinase 100.0 8.4E-96 2E-100 748.8 28.9 314 2-360 192-505 (505)
2 PF09353 DUF1995: Domain of un 100.0 2.2E-49 4.7E-54 365.4 22.0 197 64-303 8-208 (209)
3 PF07302 AroM: AroM protein; 41.2 2.5E+02 0.0055 27.0 9.8 99 43-160 51-151 (221)
4 PF09345 DUF1987: Domain of un 39.0 1.3E+02 0.0029 25.2 6.7 55 64-126 26-83 (99)
5 PF06842 DUF1242: Protein of u 38.9 15 0.00032 25.7 0.8 19 340-358 8-35 (36)
6 cd07947 DRE_TIM_Re_CS Clostrid 36.9 1.4E+02 0.003 29.3 7.5 62 62-132 111-175 (279)
7 PF09822 ABC_transp_aux: ABC-t 35.5 2.8E+02 0.006 26.3 9.2 50 171-221 191-240 (271)
8 PF14258 DUF4350: Domain of un 28.1 1.3E+02 0.0028 22.7 4.5 36 175-211 32-68 (70)
9 PF13200 DUF4015: Putative gly 26.9 3.9E+02 0.0084 27.0 8.9 78 43-124 105-192 (316)
10 PF10087 DUF2325: Uncharacteri 26.8 98 0.0021 25.0 3.9 32 182-214 51-82 (97)
11 PRK01889 GTPase RsgA; Reviewed 22.1 1.3E+02 0.0029 30.3 4.6 42 175-216 111-152 (356)
12 PTZ00140 sexual stage antigen 21.6 21 0.00045 37.5 -1.2 27 335-361 402-435 (447)
13 PF15470 DUF4637: Domain of un 20.2 40 0.00086 30.7 0.4 22 339-360 68-98 (173)
No 1
>PLN02842 nucleotide kinase
Probab=100.00 E-value=8.4e-96 Score=748.83 Aligned_cols=314 Identities=82% Similarity=1.321 Sum_probs=298.1
Q ss_pred chhhHHHHHHHHHHHhhhhhccccCCCcccccccccccccCCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCc
Q 017996 2 VFADIESLLSQAKREKMKKTTAVKPVHERKSRSNQVSSSQDNWKGIPTRLNNIPHSREIRNYFYDDVLQATQRAVNDGRT 81 (362)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ln~vP~~re~~~~f~~qA~~A~~~Al~dG~~ 81 (362)
||++|.++|+++..++.. . .++..++++|++|+||||+||||||+||+|+|||+||++||++|++||++
T Consensus 192 VfeeI~~iL~~~L~~~~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~g~~ 260 (505)
T PLN02842 192 VFEEISSLLSQIQKDATK--M---------IKTKKASPVQDKWRGIPTRLNNIPHSREIRAYFYDDVLQATQRAVNDGRT 260 (505)
T ss_pred HHHHHHHHHHHHHhhhhh--h---------cccccccchhhhhccCchhhcCCCChHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 788999999887766531 1 11235679999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhhCCCeeEEEeeCCcchhhhcCCCccchhhhhhhhhcccCCCCCCc
Q 017996 82 RLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKG 161 (362)
Q Consensus 82 Rl~VEi~FPeL~~e~D~yri~t~l~Lar~~~~~l~~~G~rvrI~fPD~aG~aala~~~~~l~gv~~il~~~Dwg~~~~~~ 161 (362)
|++|||+||||+++||+|||||+|+|||+|+.+|+++|+|||||||||||+|||+|+|++|+|+++|+++|||+++++++
T Consensus 261 r~~~~~~~pel~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kv~~~~~~g~~~~~~~~~~~~~~~~~~~~~dw~~~~~~~ 340 (505)
T PLN02842 261 RLKVEINIPELNPEMDVYRIGTLMELVRVLALSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKG 340 (505)
T ss_pred eEEEEEecCccccccccccchhHHHHHHHHHHHHhhcCCceEEEecCCcchhHhccCccccccchhhhhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCCCCCCCCcEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEECCCCCCCCCCcCccCchhhHHHHHhhhc
Q 017996 162 TFVEIGSIGANEVDEQDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYAAS 241 (362)
Q Consensus 162 ~f~~~g~vg~~~v~~~DdlfIvv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~Led~~s~~Gig~~~~R~lR~~Flss 241 (362)
+|++++++|+++++++|++||+|+||+.||+|++++||+||++++||||||+||+|+|+.|++|||++++|++|++|+++
T Consensus 341 ~~~~~~~~~~~~~~~~d~~~i~v~P~~~v~~~~~~~~e~~~~~~~~rpvillnp~LeD~~~~vGig~~~~R~~R~~f~~t 420 (505)
T PLN02842 341 TFVKIGAIGAKEVDEEDDMFILVAPQNAVGNCIIDDLQAMTTAAGKRPVILVNPRLKDLPGSSGIMQTMGREQRLEYAAS 420 (505)
T ss_pred cceeecccccCCCCCCCcEEEEEcCCccccccchHHHHHHHHHhCCCeEEEECCcccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred CceeeEEEEecccCcccceeeEEEeecCCCceEEEEccCCCCCCceEEeeecCCCCCHHHHHHHhcCCCccchhhhhhhh
Q 017996 242 FENCYFFRLLYYAGTQYPIMGALRMTYPNGYELYKRVDVPSGGEKYVILSTFTEKPSSDDINDAFLGKPRYVDYMDRILD 321 (362)
Q Consensus 242 Fe~vYyLr~L~~~g~~~p~~GALfR~YPgpWqV~~~~~~~~g~g~Y~lvae~~~RPs~eEI~~~l~~~~~~~~~~~~~~~ 321 (362)
|++|||||||+++||+||++|||+|+||++||||+++++..+.++|+++++|++||++|||+++|.|++.
T Consensus 421 ~~~~Y~~~~l~~~~~~~~~~gal~~~yp~~w~l~~~~~~~~~~~~y~~~~~~~~~P~~e~i~~~~~~~~~---------- 490 (505)
T PLN02842 421 FENCYSFRLLYYAGTQYPIMGALRMSYPYRYELYKRVDEENGKEKYIILATFSERPTPDEINDAFSGRSR---------- 490 (505)
T ss_pred hhheeEEEeccccccccccceeeeecCCCCeeEEEecCccccCcceEEeeecCCCCCHHHHHHHhCCCcc----------
Confidence 9999999999999999999999999999999999988764456899999999999999999999999986
Q ss_pred HHHHHHhhhhcccccchhhhhhhcccccccccchhcccc
Q 017996 322 YMDRILYHLLFHSTDSRVLLCTCRNREKKASGFWGFLSS 360 (362)
Q Consensus 322 ~~dR~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (362)
+++||+|||||||||
T Consensus 491 ------------------------~~~~~~~~~~~~~~~ 505 (505)
T PLN02842 491 ------------------------DQAKKASGIWGFLSI 505 (505)
T ss_pred ------------------------chhhccccchhcccC
Confidence 889999999999997
No 2
>PF09353 DUF1995: Domain of unknown function (DUF1995); InterPro: IPR018962 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=2.2e-49 Score=365.45 Aligned_cols=197 Identities=36% Similarity=0.641 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhhCCCeeEEEeeCCcchhhhcCCCccch
Q 017996 64 FYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQGSMGEGALAGMPLQLA 143 (362)
Q Consensus 64 f~~qA~~A~~~Al~dG~~Rl~VEi~FPeL~~e~D~yri~t~l~Lar~~~~~l~~~G~rvrI~fPD~aG~aala~~~~~l~ 143 (362)
.++||++|+++||++|.+|++||++||+|++ ++++++++|++.|++.|++++++||| +|++++
T Consensus 8 a~~qA~~Av~~Al~~g~~r~~ve~~fP~l~~--------~~~~la~~~~~~l~~~~~~~~~~~pd-~g~~al-------- 70 (209)
T PF09353_consen 8 AVEQAAEAVQAALEDGDSRQLVELEFPGLNP--------SNMPLAREFARKLAASGRRVRVVFPD-AGEAAL-------- 70 (209)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEECCCcch--------hHHHHHHHHHHHHHhcCceEEEEcCC-hHHHHH--------
Confidence 7999999999999999999999999999943 38999999999999999999999998 999999
Q ss_pred hhhhhhhhcccCCCCCCcceeeeccCCCCC-C--CC-CCcEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEECCCCCC
Q 017996 144 GTRKILEFMDWGDYGAKGTFVEIGSIGANE-V--DE-QDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPRLKD 219 (362)
Q Consensus 144 gv~~il~~~Dwg~~~~~~~f~~~g~vg~~~-v--~~-~DdlfIvv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~Led 219 (362)
+.++|++..++ +.++++.. . .. .|+++|+|+|++. +++++|+||+.+++||+|||||+|+|
T Consensus 71 ------A~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~vvv~p~~~----~l~~~e~~~~~~~~rpvvl~Np~l~~ 135 (209)
T PF09353_consen 71 ------ARRDWGDGSFK-----IASLDDWSSSEDESKFDDILVVVAPSPQ----ELDDVEKLCEAAGGRPVVLLNPQLED 135 (209)
T ss_pred ------HhccccCCCeE-----EeeccCccccccccccCCEEEEEECChh----hHHHHHHHHHhcCCCeEEEEeccccc
Confidence 55555443322 33333321 1 11 1799999999999 99999999999989999999999999
Q ss_pred CCCCcCccCchhhHHHHHhhhcCceeeEEEEecccCcccceeeEEEeecCCCceEEEEccCCCCCCceEEeeecCCCCCH
Q 017996 220 LPGSSGIMQTMGRDKRLEYAASFENCYFFRLLYYAGTQYPIMGALRMTYPNGYELYKRVDVPSGGEKYVILSTFTEKPSS 299 (362)
Q Consensus 220 ~~s~~Gig~~~~R~lR~~FlssFe~vYyLr~L~~~g~~~p~~GALfR~YPgpWqV~~~~~~~~g~g~Y~lvae~~~RPs~ 299 (362)
.++ +|+| +++|++|++|+++||+||||||++++| .|+||||||||||||++++ +|+|+||+++++|||+
T Consensus 136 ~~~-~g~g-~~~r~~~~~Fl~~fe~vY~l~~l~~~~-----~gal~r~yP~~Wqv~~~~~----~~~y~~v~~~~~rP~~ 204 (209)
T PF09353_consen 136 VRS-VGFG-FPGRKLRERFLSSFETVYYLRPLRISG-----NGALFRCYPGPWQVFREDD----DGEYECVAEFEERPTY 204 (209)
T ss_pred CCc-cccc-cccHHHHHHHHhhceEEEEEEeeccCC-----cEEEEEeCCCCcEEEEEcC----CCcEEEEEecccCCCh
Confidence 884 5677 889999999999999999999998876 4999999999999999874 2899999999999999
Q ss_pred HHHH
Q 017996 300 DDIN 303 (362)
Q Consensus 300 eEI~ 303 (362)
+||+
T Consensus 205 ~e~~ 208 (209)
T PF09353_consen 205 EELE 208 (209)
T ss_pred HHhh
Confidence 9997
No 3
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=41.21 E-value=2.5e+02 Score=27.00 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=56.0
Q ss_pred CCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCc--eeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhhCCC
Q 017996 43 NWKGIPTRLNNIPHSREIRNYFYDDVLQATQRAVNDGRT--RLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGK 120 (362)
Q Consensus 43 ~~~~~p~~ln~vP~~re~~~~f~~qA~~A~~~Al~dG~~--Rl~VEi~FPeL~~e~D~yri~t~l~Lar~~~~~l~~~G~ 120 (362)
+-..+-|+|++=-.-+--+++.....++++...=++|.. .+-..=+||.|....-... -..+...+..++... .
T Consensus 51 ge~vLvTrL~DG~~V~ls~~~v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~~~~lle---P~ril~~lV~al~~~-~ 126 (221)
T PF07302_consen 51 GEYVLVTRLRDGTQVVLSKKKVEPRLQACIAQLEAQGYDVILLLCTGEFPGLTARNPLLE---PDRILPPLVAALVGG-H 126 (221)
T ss_pred CCceeEEEeCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCCCcceee---hHHhHHHHHHHhcCC-C
Confidence 336677788732222222232333444444444457763 3334557998865321111 235666677777544 7
Q ss_pred eeEEEeeCCcchhhhcCCCccchhhhhhhhhcccCCCCCC
Q 017996 121 RVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAK 160 (362)
Q Consensus 121 rvrI~fPD~aG~aala~~~~~l~gv~~il~~~Dwg~~~~~ 160 (362)
++-|++|. ..+.+. ....|...+..
T Consensus 127 ~vGVivP~-~eQ~~~--------------~~~kW~~l~~~ 151 (221)
T PF07302_consen 127 QVGVIVPL-PEQIAQ--------------QAEKWQPLGNP 151 (221)
T ss_pred eEEEEecC-HHHHHH--------------HHHHHHhcCCC
Confidence 99999998 787775 56778775433
No 4
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=39.00 E-value=1.3e+02 Score=25.23 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHH---hhCCCeeEEEe
Q 017996 64 FYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSF---ADDGKRVKVCV 126 (362)
Q Consensus 64 f~~qA~~A~~~Al~dG~~Rl~VEi~FPeL~~e~D~yri~t~l~Lar~~~~~l---~~~G~rvrI~f 126 (362)
||+-..+.+.+.+++....+++++.+-=+|.. +-.....+.+.| ++.|..|.|-|
T Consensus 26 Fy~Pi~~wl~~Yl~~~~~~i~~~~~L~YfNTS--------Ssk~l~~i~~~Le~~~~~g~~V~v~W 83 (99)
T PF09345_consen 26 FYQPILDWLEAYLAEPNKPITFNFKLSYFNTS--------SSKALMDIFDLLEDAAQKGGKVTVNW 83 (99)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEEEEEecH--------hHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 99999999999999977777777777777653 334444555555 57788888754
No 5
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=38.85 E-value=15 Score=25.74 Aligned_cols=19 Identities=42% Similarity=0.996 Sum_probs=12.5
Q ss_pred hhhhhcc---c-----c-cccccchhcc
Q 017996 340 LLCTCRN---R-----E-KKASGFWGFL 358 (362)
Q Consensus 340 ~~~~~~~---~-----~-~~~~~~~~~~ 358 (362)
+.|||-- . + .+.+||+|++
T Consensus 8 ~ICTCtYir~~~P~l~dr~kk~G~~G~f 35 (36)
T PF06842_consen 8 LICTCTYIRSIFPSLLDRNKKTGFRGVF 35 (36)
T ss_pred HHHHhHhHHhHCccccccCCCccccccc
Confidence 5689831 1 2 4558999986
No 6
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=36.90 E-value=1.4e+02 Score=29.32 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhh---hhhHHHHHHHHHHHhhCCCeeEEEeeCCcch
Q 017996 62 NYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRI---GTLMELVRVIALSFADDGKRVKVCVQGSMGE 132 (362)
Q Consensus 62 ~~f~~qA~~A~~~Al~dG~~Rl~VEi~FPeL~~e~D~yri---~t~l~Lar~~~~~l~~~G~rvrI~fPD~aG~ 132 (362)
++..+.+.+++..|-+.|.. |++-+.. ..+. +..++++.+++....+.|...+|.++|..|-
T Consensus 111 ~e~l~~~~~~v~~a~~~g~~---v~~~~ed------~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~ 175 (279)
T cd07947 111 EEAMEKYLEIVEEALDHGIK---PRCHLED------ITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGY 175 (279)
T ss_pred HHHHHHHHHHHHHHHHCCCe---EEEEEEc------ccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCc
Confidence 44677788888888888853 3444422 2222 3456788888888777887778999996663
No 7
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=35.53 E-value=2.8e+02 Score=26.34 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=38.3
Q ss_pred CCCCCCCCcEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEECCCCCCCC
Q 017996 171 ANEVDEQDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPRLKDLP 221 (362)
Q Consensus 171 ~~~v~~~DdlfIvv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~Led~~ 221 (362)
...+.++.+++|++.|...-...|+..+.+..+ .|++-++|++|.-.+..
T Consensus 191 ~~~IP~~~d~Lvi~~P~~~ls~~e~~~l~~yl~-~GG~ll~~~d~~~~~~~ 240 (271)
T PF09822_consen 191 NEEIPDDADVLVIAGPKTDLSEEELYALDQYLM-NGGKLLILLDPFSVELQ 240 (271)
T ss_pred ccccCCCCCEEEEECCCCCCCHHHHHHHHHHHH-cCCeEEEEECCcccccc
Confidence 345678889999999999666667777777765 47899999999854433
No 8
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=28.10 E-value=1.3e+02 Score=22.68 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCCCcEEEEEeccCCCcc-ccHHHHHHHHHHcCCCcEE
Q 017996 175 DEQDDMFILVAPQNAVGN-CIIDDMKAMTDAAGTRPVI 211 (362)
Q Consensus 175 ~~~DdlfIvv~P~~~v~~-~el~~ve~l~~~a~drPvV 211 (362)
..++..+|++.|.....+ .+++.+.+..+ .|++.||
T Consensus 32 ~~~~~tll~i~~~~~~~~~~~~~~l~~~v~-~G~~lvl 68 (70)
T PF14258_consen 32 EADDGTLLVIGPDLRLSEPEEAEALLEWVE-AGNTLVL 68 (70)
T ss_pred CCCCCEEEEEeCCCCCCchHHHHHHHHHHH-cCCEEEE
Confidence 457889999999966543 45566666555 3566555
No 9
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=26.88 E-value=3.9e+02 Score=27.00 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=49.5
Q ss_pred CCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEE-EEcCCCCC-C------cch--hhhhhhHHHHHHHH
Q 017996 43 NWKGIPTRLNNIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVE-INIPELNP-E------MDV--YRIGTLMELVRVIA 112 (362)
Q Consensus 43 ~~~~~p~~ln~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VE-i~FPeL~~-e------~D~--yri~t~l~Lar~~~ 112 (362)
.|++-+..-+-=|+++|+++|..+=|.+|++ -|..-++.+ |+||+-.. + .+. .|..++...+....
T Consensus 105 ~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~----~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~ 180 (316)
T PF13200_consen 105 VWRDNEGEAWVNPYSKEVWDYNIDIAKEAAK----LGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAR 180 (316)
T ss_pred cccCCCCCccCCCCCHHHHHHHHHHHHHHHH----cCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHH
Confidence 3544444334449999999999998888664 488777766 88999111 1 011 14455566666666
Q ss_pred HHHhhCCCeeEE
Q 017996 113 LSFADDGKRVKV 124 (362)
Q Consensus 113 ~~l~~~G~rvrI 124 (362)
..|...|..+-+
T Consensus 181 ~~l~~~~v~vSa 192 (316)
T PF13200_consen 181 EELHPYGVPVSA 192 (316)
T ss_pred HHHhHcCCCEEE
Confidence 677667766544
No 10
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.85 E-value=98 Score=25.03 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=26.3
Q ss_pred EEEeccCCCccccHHHHHHHHHHcCCCcEEEEC
Q 017996 182 ILVAPQNAVGNCIIDDMKAMTDAAGTRPVILIN 214 (362)
Q Consensus 182 Ivv~P~~~v~~~el~~ve~l~~~a~drPvVllN 214 (362)
+||.++..++...+..+++.|+.. +.|+++.|
T Consensus 51 ~VIv~t~~vsH~~~~~vk~~akk~-~ip~~~~~ 82 (97)
T PF10087_consen 51 LVIVFTDYVSHNAMWKVKKAAKKY-GIPIIYSR 82 (97)
T ss_pred EEEEEeCCcChHHHHHHHHHHHHc-CCcEEEEC
Confidence 455566777777899999999887 99999998
No 11
>PRK01889 GTPase RsgA; Reviewed
Probab=22.15 E-value=1.3e+02 Score=30.32 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=28.0
Q ss_pred CCCCcEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEECCC
Q 017996 175 DEQDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPR 216 (362)
Q Consensus 175 ~~~DdlfIvv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~ 216 (362)
..-|.++||+++.+..+..-++.+-.+++..+-.|+|++|=.
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~ 152 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKA 152 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEECh
Confidence 455778999988765443344444444666677899998854
No 12
>PTZ00140 sexual stage antigen s45/48; Provisional
Probab=21.63 E-value=21 Score=37.52 Aligned_cols=27 Identities=37% Similarity=0.740 Sum_probs=21.6
Q ss_pred ccchhhhhhhcccccc-------cccchhccccC
Q 017996 335 TDSRVLLCTCRNREKK-------ASGFWGFLSSV 361 (362)
Q Consensus 335 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 361 (362)
+.+-...|+|+...|+ +||.|||||=+
T Consensus 402 ~kt~~f~C~C~~d~k~g~Mel~I~s~~~~Fls~~ 435 (447)
T PTZ00140 402 PKTTSFRCICEKGGKIGYMELKIASSSWGFLSKT 435 (447)
T ss_pred CCCceEEEEEEeCCEEEEEEEEEccchhHHHHHH
Confidence 4556678999998775 68999999854
No 13
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=20.23 E-value=40 Score=30.74 Aligned_cols=22 Identities=45% Similarity=1.002 Sum_probs=15.0
Q ss_pred hhhhhhcccc---------cccccchhcccc
Q 017996 339 VLLCTCRNRE---------KKASGFWGFLSS 360 (362)
Q Consensus 339 ~~~~~~~~~~---------~~~~~~~~~~~~ 360 (362)
|-+|.-|..+ +..|||||.||-
T Consensus 68 VSY~PLRQEsStqqValLRRadsgFWgwlsP 98 (173)
T PF15470_consen 68 VSYCPLRQESSTQQVALLRRADSGFWGWLSP 98 (173)
T ss_pred eecccccccchhhHHHHhhcccCCchhhhcH
Confidence 5556666544 357999999873
Done!