Query 017996
Match_columns 362
No_of_seqs 130 out of 173
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5s_A Gilaa.00834.A, macropha 30.7 62 0.0021 26.9 4.8 86 42-128 17-122 (135)
2 2rp4_A Transcription factor P5 27.5 28 0.00095 27.0 1.9 35 268-307 8-43 (76)
3 3fwt_A Macrophage migration in 27.0 69 0.0023 26.5 4.5 88 41-128 15-122 (133)
4 3fwu_A Macrophage migration in 27.0 51 0.0017 27.3 3.7 89 40-128 14-122 (133)
5 4dh4_A MIF; trimer, isomerase; 23.8 1.1E+02 0.0038 24.0 5.0 77 52-128 7-101 (114)
6 3nbm_A PTS system, lactose-spe 21.8 49 0.0017 26.7 2.5 32 181-216 56-87 (108)
7 3hhl_A RPA0582; alpha-beta-bar 20.8 49 0.0017 28.1 2.4 24 196-219 11-35 (143)
8 3l9k_W Dynein intermediate cha 18.3 1.3E+02 0.0044 20.4 3.5 27 53-80 8-34 (38)
9 3gqe_A Non-structural protein 16.3 5.2E+02 0.018 22.2 8.2 63 62-128 85-147 (168)
10 1vq8_K 50S ribosomal protein L 12.5 1.4E+02 0.0048 25.3 3.1 32 206-239 91-122 (132)
No 1
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=30.72 E-value=62 Score=26.85 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=58.8
Q ss_pred CCCCCCCc-ccc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCCC-CCCc--c------hhhhh-----hhH
Q 017996 42 DNWKGIPT-RLN-NIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPEL-NPEM--D------VYRIG-----TLM 105 (362)
Q Consensus 42 ~~~~~~p~-~ln-~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEi~FPeL-~~e~--D------~yri~-----t~l 105 (362)
-.-..||. .+. |+|.+.+.++.|.+++.+++..++.-....+-|.++ +.- -..+ | +.-+| ..-
T Consensus 17 ~~~~~MP~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~~vmV~v~-~~~m~fgGs~dp~a~v~i~sig~~t~e~n~ 95 (135)
T 3t5s_A 17 QGPGSMPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMAGVR-KADMSFGTSTDLCCFVDFYCIGVISQAKNP 95 (135)
T ss_dssp ----CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCGGGCEEEEE-ECCCCBTTBCCSCEEEEEECCC-----CCH
T ss_pred cCCCCcceEEEEecCccchhccchhHHHHHHHHHHhhCCchHHHHhhhh-hhhcccCcccceEEEEEEEEEEEEeccCCc
Confidence 34456887 444 899999988999999999999999888778778888 542 1111 1 11122 245
Q ss_pred HHHHHHHHHHhh----CCCeeEEEeeC
Q 017996 106 ELVRVIALSFAD----DGKRVKVCVQG 128 (362)
Q Consensus 106 ~Lar~~~~~l~~----~G~rvrI~fPD 128 (362)
+++..|+..|.+ ...|+-|.|-|
T Consensus 96 ~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 96 SISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp HHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred hHHHHHHHHHHHhcccCccEEEEEecc
Confidence 788888888853 34588899987
No 2
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=27.46 E-value=28 Score=26.98 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=24.6
Q ss_pred cCCCceEEEEccCCCCCCceEEeeecCCCC-CHHHHHHHhc
Q 017996 268 YPNGYELYKRVDVPSGGEKYVILSTFTEKP-SSDDINDAFL 307 (362)
Q Consensus 268 YPgpWqV~~~~~~~~g~g~Y~lvae~~~RP-s~eEI~~~l~ 307 (362)
-|..|+|=+-.+ |.|+++-+.+.+- -++-||-++.
T Consensus 8 ~p~dW~VsRt~d-----GdYrL~itcpkKe~LLqSIEgmik 43 (76)
T 2rp4_A 8 SAAEWNVSRTPD-----GDYRLAITCPNKEWLLQSIEGMIK 43 (76)
T ss_dssp SSCCCEEECCTT-----TBEEEEEEESCHHHHHHHHHHHHH
T ss_pred CCccceeeeccC-----CceEEEEEeCcHHHHHHHHHHHHH
Confidence 589999999655 8999999998753 2333444443
No 3
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=27.02 E-value=69 Score=26.46 Aligned_cols=88 Identities=8% Similarity=0.001 Sum_probs=58.6
Q ss_pred cCCCCCCCc-ccc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCC-CCCCc--c------hhhh-----hhh
Q 017996 41 QDNWKGIPT-RLN-NIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPE-LNPEM--D------VYRI-----GTL 104 (362)
Q Consensus 41 ~~~~~~~p~-~ln-~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEi~FPe-L~~e~--D------~yri-----~t~ 104 (362)
.-....||. .+. |++.+.+.++.|.+++.+++..++.-....+-|.++=+. +-..+ | +.-+ ...
T Consensus 15 ~~~~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~~~~m~fgGs~dP~a~v~v~sig~~~~e~n 94 (133)
T 3fwt_A 15 VPRGSHMPFLQTIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGSTAPAAYVRVESWGEYAPSKP 94 (133)
T ss_dssp ---CEEEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEECSCCCCBTTBCSSCEEEEEEEEECCCTHHH
T ss_pred ccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEECCceEEECCCCCCeEEEEEEECCCCCHHHH
Confidence 344556887 444 899999888999999999999999888777777776432 11111 1 1111 234
Q ss_pred HHHHHHHHHHHhh----CCCeeEEEeeC
Q 017996 105 MELVRVIALSFAD----DGKRVKVCVQG 128 (362)
Q Consensus 105 l~Lar~~~~~l~~----~G~rvrI~fPD 128 (362)
.+++..|+..|.+ ...|+-|.|-|
T Consensus 95 ~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 95 KMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 5788888888853 24578888887
No 4
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=26.98 E-value=51 Score=27.30 Aligned_cols=89 Identities=9% Similarity=0.058 Sum_probs=57.9
Q ss_pred ccCCCCCCCc-ccc-CCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCC-CCCCc--c------hhhh-----hh
Q 017996 40 SQDNWKGIPT-RLN-NIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPE-LNPEM--D------VYRI-----GT 103 (362)
Q Consensus 40 ~~~~~~~~p~-~ln-~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEi~FPe-L~~e~--D------~yri-----~t 103 (362)
.......||. .+. |++.+.+.++.|.+++.+++..++.-....+-|.++=+. +-..+ | ..-+ ..
T Consensus 14 ~~~~~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~vmV~~~~~~~m~fgGs~dP~a~v~i~sig~~~~e~ 93 (133)
T 3fwu_A 14 LVPRGSHMPVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPSE 93 (133)
T ss_dssp -------CCEEEEEESSCCCHHHHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTTH
T ss_pred CCCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHCcCccEEEEEEECCceEEECCcCCCEEEEEEEEcCCCCHHH
Confidence 3445567997 444 999999999889999999999999877777777777432 11111 1 1111 23
Q ss_pred hHHHHHHHHHHHhh----CCCeeEEEeeC
Q 017996 104 LMELVRVIALSFAD----DGKRVKVCVQG 128 (362)
Q Consensus 104 ~l~Lar~~~~~l~~----~G~rvrI~fPD 128 (362)
..+++..|+..|.+ ...|+-|.|-|
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 94 PEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 56788888888853 24688898988
No 5
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=23.81 E-value=1.1e+02 Score=24.00 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=53.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCC-CCCCc--c------hhhh-----hhhHHHHHHHHHHHhh
Q 017996 52 NNIPHSREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPE-LNPEM--D------VYRI-----GTLMELVRVIALSFAD 117 (362)
Q Consensus 52 n~vP~~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEi~FPe-L~~e~--D------~yri-----~t~l~Lar~~~~~l~~ 117 (362)
.|+|.+.+..+-|..++.+++..++.-...++-|.++-.. +-..+ | ..-+ ...-+++..|++.|.+
T Consensus 7 TNv~~~~~~~~~l~~~ls~~~a~~lgKPe~~v~V~~~~~~~m~fgGs~~p~a~v~i~~ig~~~~e~~~~l~~~i~~~l~~ 86 (114)
T 4dh4_A 7 CPVAATPAQQDALLKDAEKAVADALGKPLSYVMVGYSQTGQMRFGGSSDPCAFIRVASIGGITSSTNCKIAAALSAACER 86 (114)
T ss_dssp ESSCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECSCCCBTTBCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCchhhHHHHHHHHHHHHHHHHCCChHHEEEEEeCCceEEECCcCCCeEEEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 3999988888889999999999999888877777766321 11111 1 1111 2345788888888853
Q ss_pred ----CCCeeEEEeeC
Q 017996 118 ----DGKRVKVCVQG 128 (362)
Q Consensus 118 ----~G~rvrI~fPD 128 (362)
...|+-|.|-|
T Consensus 87 ~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 87 HLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHCCCGGGEEEEEEE
T ss_pred HhCcCcccEEEEEEe
Confidence 24588888887
No 6
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=21.85 E-value=49 Score=26.71 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=25.4
Q ss_pred EEEEeccCCCccccHHHHHHHHHHcCCCcEEEECCC
Q 017996 181 FILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPR 216 (362)
Q Consensus 181 fIvv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~ 216 (362)
+|++.||-. ..++.+++.++.. +.||.++||.
T Consensus 56 vvLLgPQV~---y~~~~ik~~~~~~-~ipV~vI~~~ 87 (108)
T 3nbm_A 56 LIILAPQVR---SYYREMKVDAERL-GIQIVATRGM 87 (108)
T ss_dssp EEEECGGGG---GGHHHHHHHHTTT-TCEEEECCHH
T ss_pred EEEEChHHH---HHHHHHHHHhhhc-CCcEEEeCHH
Confidence 467789876 2788899888765 7999999985
No 7
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=20.81 E-value=49 Score=28.09 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCcEEEECCC-CCC
Q 017996 196 DDMKAMTDAAGTRPVILINPR-LKD 219 (362)
Q Consensus 196 ~~ve~l~~~a~drPvVllNp~-Led 219 (362)
++++++.+.-.++||+|+|.- +.+
T Consensus 11 ~~~~~~~~~~~~~pv~MlNLlrf~~ 35 (143)
T 3hhl_A 11 EVFAQFRANDREGPIHMLNLVRLRP 35 (143)
T ss_dssp HHHHHHHHCCCSSCEEEEEEEEECS
T ss_pred HHHHHHHhCCCCCCEEEEehhcccc
Confidence 667777766678999999964 443
No 8
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=18.28 E-value=1.3e+02 Score=20.38 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 017996 53 NIPHSREIRNYFYDDVLQATQRAVNDGR 80 (362)
Q Consensus 53 ~vP~~re~~~~f~~qA~~A~~~Al~dG~ 80 (362)
.|=+|.++.. |++++.+-+++||++..
T Consensus 8 ~I~~S~~F~~-F~~rsskviERAL~e~y 34 (38)
T 3l9k_W 8 MIILSENFQR-FVVRAGRVIERALSENV 34 (38)
T ss_dssp HHHTSHHHHH-HHHHHHHHHHHHHHHSS
T ss_pred HHhcCHHHHH-HHHHHHHHHHHHHcccc
Confidence 4557788877 99999999999998765
No 9
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=16.29 E-value=5.2e+02 Score=22.20 Aligned_cols=63 Identities=8% Similarity=0.094 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhhCCCeeEEEeeC
Q 017996 62 NYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQG 128 (362)
Q Consensus 62 ~~f~~qA~~A~~~Al~dG~~Rl~VEi~FPeL~~e~D~yri~t~l~Lar~~~~~l~~~G~rvrI~fPD 128 (362)
+.+.+--..+++.|.+.|.+ .|-||.|..-.-.|......+..+++...+...-.+|.|+.=|
T Consensus 85 ~~L~~~y~~~L~~a~~~~~~----SIAfP~IstG~~g~p~~~aa~~i~~~l~~~~~~~~~V~iv~fd 147 (168)
T 3gqe_A 85 KQLAEAYESIAKIVNDNNYK----SVAIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRD 147 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTCS----EEEEECTTSSTTSCSSCCHHHHHHHHHHHHTTSCCEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHcCCC----EEEECCcccCCCCCCHHHHHHHHHHHHHHCCCCCCeEEEEEcC
Confidence 33444444556667677766 4599999765555665556667778877776555677766554
No 10
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=12.45 E-value=1.4e+02 Score=25.33 Aligned_cols=32 Identities=3% Similarity=0.187 Sum_probs=23.5
Q ss_pred CCCcEEEECCCCCCCCCCcCccCchhhHHHHHhh
Q 017996 206 GTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYA 239 (362)
Q Consensus 206 ~drPvVllNp~Led~~s~~Gig~~~~R~lR~~Fl 239 (362)
.|--+||+|++.+-.. .-|.+..+|++|+.|.
T Consensus 91 ddNA~Vlin~~g~p~G--TrI~GPVarElr~~~~ 122 (132)
T 1vq8_K 91 EDNAAVIVDENEDPRG--TELKGPIAREVAQRFG 122 (132)
T ss_dssp SSCEEEEECTTSCBSS--SCBCSEECHHHHHHSH
T ss_pred CCceEEEECCCCCEeE--EEEEcCcCHHHHhccc
Confidence 3566999999988766 3344478899998764
Done!