Query 017996
Match_columns 362
No_of_seqs 130 out of 173
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 08:15:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017996.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017996hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lu4a_ c.47.1.10 (A:) Soluble 19.8 78 0.0057 23.2 5.3 89 193-307 41-132 (134)
2 d1t9ha2 c.37.1.8 (A:68-298) Pr 16.9 52 0.0038 28.0 4.0 42 175-216 9-51 (231)
3 d1byra_ d.136.1.1 (A:) Nucleas 16.4 1.6E+02 0.012 21.5 6.6 48 68-128 14-61 (152)
4 d1u0la2 c.37.1.8 (A:69-293) Pr 15.0 71 0.0052 26.9 4.4 42 175-216 9-51 (225)
5 d1msza_ d.68.7.1 (A:) SmuBP-2 11.2 1.7E+02 0.013 19.4 4.7 38 66-115 3-41 (62)
6 d1f5qb1 a.74.1.1 (B:6-146) Vir 10.8 49 0.0035 25.6 1.7 30 316-345 65-94 (141)
7 d1vqok1 b.39.1.1 (K:1-132) Rib 10.5 91 0.0066 24.4 3.3 32 206-239 91-122 (132)
8 d1rcua_ c.129.1.1 (A:) Hypothe 10.4 1.1E+02 0.008 24.1 3.9 35 176-216 95-129 (170)
9 d1vhua_ c.50.1.2 (A:) Hypothet 10.3 3.6E+02 0.026 20.9 8.8 68 57-128 109-177 (192)
10 d2j01o1 b.39.1.1 (O:1-122) Rib 10.2 91 0.0066 24.0 3.2 32 206-239 80-112 (122)
No 1
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=19.83 E-value=78 Score=23.21 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHHcCCCcEEEECCCCCCCCCCcCccCchhhHHHHHhhhcCceeeEEEEecccCcccceeeEEEeec---C
Q 017996 193 CIIDDMKAMTDAAGTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYAASFENCYFFRLLYYAGTQYPIMGALRMTY---P 269 (362)
Q Consensus 193 ~el~~ve~l~~~a~drPvVllNp~Led~~s~~Gig~~~~R~lR~~FlssFe~vYyLr~L~~~g~~~p~~GALfR~Y---P 269 (362)
.+++.++++.+...+-.+|.+|..= + ...-.+|+..+..-|-+ .+... |.+.+.| .
T Consensus 41 ~~~p~l~~~~~~~~~v~~v~v~~~~-~------------~~~~~~~~~~~~~~~p~-~~d~~-------~~~~~~~~v~~ 99 (134)
T d1lu4a_ 41 AEAPSLSQVAAANPAVTFVGIATRA-D------------VGAMQSFVSKYNLNFTN-LNDAD-------GVIWARYNVPW 99 (134)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEECSS-C------------HHHHHHHHHHHTCCSEE-EECTT-------SHHHHHTTCCS
T ss_pred ecchhHHHHhhhhcccccccccccc-c------------hhhhhhhhhhhccccce-eeCch-------HHHHHHcCCCc
Confidence 3788898888776677788888631 1 12234566666555543 23333 3343333 2
Q ss_pred CCceEEEEccCCCCCCceEEeeecCCCCCHHHHHHHhc
Q 017996 270 NGYELYKRVDVPSGGEKYVILSTFTEKPSSDDINDAFL 307 (362)
Q Consensus 270 gpWqV~~~~~~~~g~g~Y~lvae~~~RPs~eEI~~~l~ 307 (362)
=|.-++...+ |+-+.+.....+++.++|...|.
T Consensus 100 ~P~~~lid~~-----G~i~~v~~~~g~~~~~~l~~~l~ 132 (134)
T d1lu4a_ 100 QPAFVFYRAD-----GTSTFVNNPTAAMSQDELSGRVA 132 (134)
T ss_dssp SSEEEEECTT-----SCEEEECCSSSCCCHHHHHHHHH
T ss_pred CCEEEEEeCC-----CeEEEEeccCCCCCHHHHHHHHH
Confidence 3555555332 66666777778889999988764
No 2
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=16.86 E-value=52 Score=27.98 Aligned_cols=42 Identities=17% Similarity=0.361 Sum_probs=24.8
Q ss_pred CCCCcEEEEEec-cCCCccccHHHHHHHHHHcCCCcEEEECCC
Q 017996 175 DEQDDMFILVAP-QNAVGNCIIDDMKAMTDAAGTRPVILINPR 216 (362)
Q Consensus 175 ~~~DdlfIvv~P-~~~v~~~el~~ve~l~~~a~drPvVllNp~ 216 (362)
..=|.++||++. ++..+..-++..--+++..+-.|+|++|=.
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~ 51 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKM 51 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 455778888754 454332234444444555556888888854
No 3
>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}
Probab=16.41 E-value=1.6e+02 Score=21.52 Aligned_cols=48 Identities=10% Similarity=0.261 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHhhCCCeeEEEeeC
Q 017996 68 VLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFADDGKRVKVCVQG 128 (362)
Q Consensus 68 A~~A~~~Al~dG~~Rl~VEi~FPeL~~e~D~yri~t~l~Lar~~~~~l~~~G~rvrI~fPD 128 (362)
+.+++.++|+.-++.+ .|..+.+.+ -++...|..+ ++.|-+|+|++.+
T Consensus 14 ~~~~i~~~I~~A~~~I--~I~~~~~~~----------~~i~~aL~~a-~~rGV~Vril~~~ 61 (152)
T d1byra_ 14 ARVLVLSAIDSAKTSI--RMMAYSFTA----------PDIMKALVAA-KKRGVDVKIVIDE 61 (152)
T ss_dssp HHHHHHHHHHHCSSEE--EEEESSBCC----------HHHHHHHHHH-HHTTCEEEEEEES
T ss_pred HHHHHHHHHHhCCcEE--EEEEEeecC----------HHHHHHHHHH-HhcCCeEEEEEEe
Confidence 4556777777666654 668888864 3455555444 4679999999987
No 4
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=14.96 E-value=71 Score=26.93 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=24.8
Q ss_pred CCCCcEEEEEec-cCCCccccHHHHHHHHHHcCCCcEEEECCC
Q 017996 175 DEQDDMFILVAP-QNAVGNCIIDDMKAMTDAAGTRPVILINPR 216 (362)
Q Consensus 175 ~~~DdlfIvv~P-~~~v~~~el~~ve~l~~~a~drPvVllNp~ 216 (362)
..=|.++||++. +|.-+..-++..--+++..+=.|+|+||=.
T Consensus 9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~ 51 (225)
T d1u0la2 9 ANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKM 51 (225)
T ss_dssp ESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCG
T ss_pred ccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 455778888863 444322234444444556666888888854
No 5
>d1msza_ d.68.7.1 (A:) SmuBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.17 E-value=1.7e+02 Score=19.43 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCceeEEEEEcCC-CCCCcchhhhhhhHHHHHHHHHHH
Q 017996 66 DDVLQATQRAVNDGRTRLKVEINIPE-LNPEMDVYRIGTLMELVRVIALSF 115 (362)
Q Consensus 66 ~qA~~A~~~Al~dG~~Rl~VEi~FPe-L~~e~D~yri~t~l~Lar~~~~~l 115 (362)
++..+.+.+-+++.++ ++.||+ ++.. --.++-++|..+
T Consensus 3 ~~~~~~i~~Fv~s~~~----~~~f~p~m~~~--------~R~~vH~lA~~~ 41 (62)
T d1msza_ 3 DHFRAMIVEFMASKKM----QLEFPPSLNSH--------DRLRVHQIAEEH 41 (62)
T ss_dssp HHHHHHHHHHHHHTCS----EEEECTTCCSH--------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCC----EEEeCCCCCHH--------HHHHHHHHHHHc
Confidence 4556667777788776 468977 7753 234555666555
No 6
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]}
Probab=10.79 E-value=49 Score=25.56 Aligned_cols=30 Identities=3% Similarity=0.076 Sum_probs=24.5
Q ss_pred hhhhhhHHHHHHhhhhcccccchhhhhhhc
Q 017996 316 MDRILDYMDRILYHLLFHSTDSRVLLCTCR 345 (362)
Q Consensus 316 ~~~~~~~~dR~~~~~~f~~~~~~~~~~~~~ 345 (362)
+-.-++.+|||+....++..+-..+-|||-
T Consensus 65 l~lAv~llDrfls~~~i~~~~lqL~a~tcL 94 (141)
T d1f5qb1 65 FPLAVALLDELFLSTRIDRENYQSTAAVAL 94 (141)
T ss_dssp HHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 334588999999999888888888888884
No 7
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=10.49 E-value=91 Score=24.39 Aligned_cols=32 Identities=3% Similarity=0.187 Sum_probs=23.3
Q ss_pred CCCcEEEECCCCCCCCCCcCccCchhhHHHHHhh
Q 017996 206 GTRPVILINPRLKDLPGSSGIMQTMGRDKRLEYA 239 (362)
Q Consensus 206 ~drPvVllNp~Led~~s~~Gig~~~~R~lR~~Fl 239 (362)
.+--+||+|++.+-+. .=|.+..+|++|++|.
T Consensus 91 ddNa~VLi~~~~~p~G--TRI~GpV~~Elr~k~~ 122 (132)
T d1vqok1 91 EDNAAVIVDENEDPRG--TELKGPIAREVAQRFG 122 (132)
T ss_dssp SSCEEEEECTTSCBSS--SCBCSCBCHHHHHHSH
T ss_pred CCCEEEEECCCCCEee--eEEeccHhHHHHhhhh
Confidence 4567999999988766 3344367899998764
No 8
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=10.36 E-value=1.1e+02 Score=24.14 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred CCCcEEEEEeccCCCccccHHHHHHHHHHcCCCcEEEECCC
Q 017996 176 EQDDMFILVAPQNAVGNCIIDDMKAMTDAAGTRPVILINPR 216 (362)
Q Consensus 176 ~~DdlfIvv~P~~~v~~~el~~ve~l~~~a~drPvVllNp~ 216 (362)
...|+||+ .|... | +|+.+-+... -.+|+|++|..
T Consensus 95 ~~sda~I~-lPGG~-G--Tl~El~~a~~--l~KPiilln~~ 129 (170)
T d1rcua_ 95 RNADVVVS-IGGEI-G--TAIEILGAYA--LGKPVILLRGT 129 (170)
T ss_dssp TTCSEEEE-ESCCH-H--HHHHHHHHHH--TTCCEEEETTS
T ss_pred hcccceee-ecccc-c--hHHHHHHHHH--hCCceEEecCC
Confidence 44567765 57654 2 5554443332 36999999854
No 9
>d1vhua_ c.50.1.2 (A:) Hypothetical protein AF1521 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.31 E-value=3.6e+02 Score=20.89 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCceeEEEEEcCCCCCCcchhhhhhhHHHHHHHHHHHh-hCCCeeEEEeeC
Q 017996 57 SREIRNYFYDDVLQATQRAVNDGRTRLKVEINIPELNPEMDVYRIGTLMELVRVIALSFA-DDGKRVKVCVQG 128 (362)
Q Consensus 57 ~re~~~~f~~qA~~A~~~Al~dG~~Rl~VEi~FPeL~~e~D~yri~t~l~Lar~~~~~l~-~~G~rvrI~fPD 128 (362)
+.+..+++++-...+.+.|.+.|.+ .|-||.|..-.-.+......+++.+-.+.|. ..-++|+++.-|
T Consensus 109 ~~~~~~~L~~~~~~~L~~A~~~~~~----SIA~P~lgtG~~g~p~~~~a~~~~~ai~~f~~~~l~~V~~v~~~ 177 (192)
T d1vhua_ 109 SEELKEKLYKAFLGPLEKAEEMGVE----SIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYD 177 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCC----EEEECCTTSSTTCCCHHHHHHHHHHHHHHCCCSSCCEEEEEESS
T ss_pred cchhHHHHHHHHHHHHHHHHHcCCc----EEEecCccCCCCCCCHHHHHHHHHHHHHHhccCCcCEEEEEECC
Confidence 4455565666666677777777766 4589999653323333322233333333333 334678888766
No 10
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}
Probab=10.18 E-value=91 Score=23.99 Aligned_cols=32 Identities=16% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCcEEEECCCCCCCCCCcCccCchhhHHHHH-hh
Q 017996 206 GTRPVILINPRLKDLPGSSGIMQTMGRDKRLE-YA 239 (362)
Q Consensus 206 ~drPvVllNp~Led~~s~~Gig~~~~R~lR~~-Fl 239 (362)
.+--+||+|++.+-+. .-|.+..+|++|+. |.
T Consensus 80 ~~Na~VLl~~~~~p~G--TrI~Gpv~~elr~~~~~ 112 (122)
T d2j01o1 80 DDNAAVIINNQLEPRG--TRVFGPVARELREKGFM 112 (122)
T ss_dssp SSCEEEEECTTSCCSS--SCCCSCCCTHHHHHCCH
T ss_pred CCCEEEEECCCCCEee--eEEeccchHHHhhcCCc
Confidence 4667999999988766 34554678999887 54
Done!