BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017997
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|B Chain B, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|C Chain C, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|D Chain D, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|E Chain E, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|F Chain F, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|G Chain G, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|H Chain H, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|I Chain I, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|J Chain J, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|K Chain K, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|L Chain L, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2QG4|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
Length = 467
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/346 (69%), Positives = 287/346 (82%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 352
>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase
Length = 494
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/346 (69%), Positives = 287/346 (82%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|L Chain L, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|K Chain K, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|J Chain J, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|I Chain I, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Length = 487
Score = 508 bits (1308), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/346 (69%), Positives = 287/346 (82%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
Length = 467
Score = 507 bits (1306), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/346 (69%), Positives = 287/346 (82%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNP+FLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPQFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 352
>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e
pdb|4EDF|B Chain B, Dimeric Hugdh, K94e
pdb|4EDF|C Chain C, Dimeric Hugdh, K94e
pdb|4EDF|D Chain D, Dimeric Hugdh, K94e
Length = 494
Score = 507 bits (1305), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/346 (69%), Positives = 287/346 (82%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPT+T G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTETYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKSTVPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 351
>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form
Length = 467
Score = 506 bits (1304), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/346 (69%), Positives = 286/346 (82%), Gaps = 1/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 67 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKS VPV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSAVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 352
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 502 bits (1293), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/346 (69%), Positives = 286/346 (82%), Gaps = 2/346 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
KICCIGAGYVGGPT +VIA CP I V VVD++ SRINAWNS LPIYEPGL VV+ CR
Sbjct: 6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
GKNLFFST+++ + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I S KI
Sbjct: 66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
V EKST PV+ AE+I +I N+K + Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKST-PVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 184
Query: 182 PEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
PEGQ+AV+AL VY HWVP ++ILTTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 185 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 244
Query: 242 ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301
A+V +VA A+G D RIG KFL ASVGFGGSCFQKD+LNLVY+CE LPEVA YW+QVI
Sbjct: 245 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 304
Query: 302 INDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I
Sbjct: 305 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSI 350
>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|B Chain B, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
pdb|2O3J|C Chain C, Structure Of Caenorhabditis Elegans Udp-Glucose
Dehydrogenase
Length = 481
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 223/348 (64%), Positives = 282/348 (81%), Gaps = 3/348 (0%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
K+ C+GAGYVGGPT A+IA KCP I V VVD++ ++I WNSD+LPIYEPGLD +V R
Sbjct: 11 KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAAR 70
Query: 63 GKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKI 122
G+NLFFS+D+ K ++EAD++F+SVNTPTK G G G A DL Y ES +R IA + KI
Sbjct: 71 GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKI 130
Query: 123 VVEKSTVPVKTAEAIEKILTH---NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGR 179
VVEKSTVPVK AE+I IL N++ +KFQ+LSNPEFLAEGTA++DL NPDRVLIGG
Sbjct: 131 VVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGE 190
Query: 180 ETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239
+PEG +AV L +Y +WVP +RI+TTN WS+ELSKL ANAFLAQRISS+N++SA+CEA
Sbjct: 191 SSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEA 250
Query: 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQV 299
TGA +S+VA AVG D+RIG KFL ASVGFGGSCFQKD+L+LVY+CE LP+VA+YW+ V
Sbjct: 251 TGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGV 310
Query: 300 IKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
I IN++Q+ RF ++++A +FNTV++KKIA+ GFAFKK+TGDTRE+ AI
Sbjct: 311 ININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAI 358
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 217 bits (553), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 197/355 (55%), Gaps = 25/355 (7%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVSRINAWNSDQLPIYEPGLDGVV 58
+ I +G GYVG +++ C + V +D ++I NS +PIYEPGL+ ++
Sbjct: 3 LDIAVVGIGYVG-----LVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMI 57
Query: 59 -KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS 117
+ + L F T++E+ V EADI+F++V TP G +AD++Y AAR I
Sbjct: 58 ARNVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAM 112
Query: 118 KSDKIVVEKSTVPVKT----AEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDR 173
++V KSTVPV + +AI++ L I F I SNPEFL EG AI D PDR
Sbjct: 113 SRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDR 172
Query: 174 VLIGGRETPEGQKAVKALKDVYAHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNA 232
V++G + +A + + +Y + + R+L ++ SAE++K AANA LA RIS +N
Sbjct: 173 VVVG----VDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMND 228
Query: 233 MSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292
++ LCE GA+VS V +G+DSRIG KFL G+GGSCF KD+ L+ E NG
Sbjct: 229 VANLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR-- 286
Query: 293 AEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
E + V ++N+ QKS ++ V + +A+ G +FK T D RE P++
Sbjct: 287 MEVLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSL 341
>pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|B Chain B, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|C Chain C, Bcec And The Final Step Of Ugds Reaction
pdb|2Y0E|D Chain D, Bcec And The Final Step Of Ugds Reaction
Length = 478
Score = 217 bits (552), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 199/351 (56%), Gaps = 15/351 (4%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+ + IG+GYVG T A +A +V +D+ ++I+ N+ +PI+EPGL V+ +
Sbjct: 9 MNLTIIGSGYVGLVTGACLA--DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 RGK-NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
R L FSTD+E V+ D+ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGF 121
Query: 121 KIVVEKSTVPVKTAE----AIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
K++V+KSTVPV TAE A+ + L F ++SNPEFL EG A+ D PDR++I
Sbjct: 122 KVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVI 181
Query: 177 GGRETPEGQKAVKALKDVYAHW-VPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G + G++A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 182 GCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
L + GA++ V +G+D RIG FL A G+GGSCF KD+ L+ + +G + +
Sbjct: 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQI 299
Query: 296 WKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPA 346
K V +N QK +++VA ++ + A+ G AFK +T D RE P+
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPS 350
>pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
pdb|4A7P|B Chain B, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From
Sphingomonas Elodea
Length = 446
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 199/352 (56%), Gaps = 21/352 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVSRINAWNSDQLPIYEPGLDGVV 58
V+I IG GYVG +++ C S EV VD +I + + PIYEPGLD +V
Sbjct: 9 VRIAXIGTGYVG-----LVSGACFSDFGHEVVCVDKDARKIELLHQNVXPIYEPGLDALV 63
Query: 59 -KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS 117
+ L F+TD+ + V +AD VF++V TP++ G G A DL+Y +AAR IA+
Sbjct: 64 ASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRR---GDGHA-DLSYVFAAAREIAENL 119
Query: 118 KSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 177
++V KSTVPV T + +E+I+ + +++SNPEFL EG AI+D PDRV++G
Sbjct: 120 TKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGAAIEDFKRPDRVVVG 179
Query: 178 GRETPEGQKAVKALKDVYAHWVPEDR--ILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
E + A + +++Y +L T ++EL K AANAFLA +I+ +N ++
Sbjct: 180 ----TEDEFARQVXREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIAD 235
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
LCE GA+V +V+ +G D+RIG KFL+A G+GGSCF KD L L N P
Sbjct: 236 LCEQVGADVQEVSRGIGXDNRIGGKFLHAGPGYGGSCFPKDTLALXKTAADNETP--LRI 293
Query: 296 WKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAI 347
+ +++ND +K +V+ + V K + +LG FK +T D R+ P++
Sbjct: 294 VEATVQVNDARKRAXGRKVIKAXGGDVRGKTVGILGLTFKPNTDDXRDAPSL 345
>pdb|2Y0D|A Chain A, Bcec Mutation Y10k
pdb|2Y0D|B Chain B, Bcec Mutation Y10k
pdb|2Y0D|C Chain C, Bcec Mutation Y10k
pdb|2Y0D|D Chain D, Bcec Mutation Y10k
Length = 478
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 198/351 (56%), Gaps = 15/351 (4%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+ + IG+G VG T A +A +V +D+ ++I+ N+ +PI+EPGL V+ +
Sbjct: 9 MNLTIIGSGKVGLVTGACLA--DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 RGK-NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
R L FSTD+E V+ D+ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGF 121
Query: 121 KIVVEKSTVPVKTAE----AIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
K++V+KSTVPV TAE A+ + L F ++SNPEFL EG A+ D PDR++I
Sbjct: 122 KVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVI 181
Query: 177 GGRETPEGQKAVKALKDVYAHW-VPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G + G++A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 182 GCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
L + GA++ V +G+D RIG FL A G+GGSCF KD+ L+ + +G + +
Sbjct: 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQI 299
Query: 296 WKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPA 346
K V +N QK +++VA ++ + A+ G AFK +T D RE P+
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPS 350
>pdb|2Y0C|A Chain A, Bcec Mutation Y10s
pdb|2Y0C|B Chain B, Bcec Mutation Y10s
pdb|2Y0C|C Chain C, Bcec Mutation Y10s
pdb|2Y0C|D Chain D, Bcec Mutation Y10s
Length = 478
Score = 213 bits (542), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 198/351 (56%), Gaps = 15/351 (4%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+ + IG+G VG T A +A +V +D+ ++I+ N+ +PI+EPGL V+ +
Sbjct: 9 MNLTIIGSGSVGLVTGACLA--DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62 RGK-NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
R L FSTD+E V+ D+ F++V TP G +ADL Y +AAR I
Sbjct: 67 RSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGF 121
Query: 121 KIVVEKSTVPVKTAE----AIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
K++V+KSTVPV TAE A+ + L F ++SNPEFL EG A+ D PDR++I
Sbjct: 122 KVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVI 181
Query: 177 GGRETPEGQKAVKALKDVYAHW-VPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G + G++A + +K +YA + +R L ++ SAE +K AANA LA RIS +N ++
Sbjct: 182 GCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN 241
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEY 295
L + GA++ V +G+D RIG FL A G+GGSCF KD+ L+ + +G + +
Sbjct: 242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQI 299
Query: 296 WKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPA 346
K V +N QK +++VA ++ + A+ G AFK +T D RE P+
Sbjct: 300 LKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPS 350
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 185/354 (52%), Gaps = 23/354 (6%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVV-K 59
M + +G GYVG + + V D++ S + + + IYEPGL+ + +
Sbjct: 21 MASLSVLGLGYVG--VVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGR 78
Query: 60 QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKS 119
L F+ E+ V+ D F++V TP G +ADL Y E+AAR + ++
Sbjct: 79 ALSSGRLSFAESAEEAVAATDATFIAVGTPPAPDG-----SADLRYVEAAARAVGRGIRA 133
Query: 120 D---KIVVEKSTVPVKTAEA-IEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVL 175
+VV KSTVP T E + + + + G+KF + SNPEFL EG+A++D F PDR++
Sbjct: 134 KGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLREGSALEDFFKPDRIV 193
Query: 176 IGGRETPEGQKAVKALKDVY-AHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234
IG + ++A L DVY A P+ L AEL K A+N FLA +IS N +
Sbjct: 194 IGAGD----ERAASFLLDVYKAVDAPK---LVMKPREAELVKYASNVFLALKISFANEVG 246
Query: 235 ALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAE 294
L + G + +V AVG D RIG + A +GFGGSCF KD L + E GL E+A
Sbjct: 247 LLAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGL-EMA- 304
Query: 295 YWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
K V+++N+Y R+ +++ + + + VLG AFK +T D RE+ ++
Sbjct: 305 ISKAVLRVNEYM-PRYAVQLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVE 357
>pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|B Chain B, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|C Chain C, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
pdb|1MV8|D Chain D, 1.55 A Crystal Structure Of A Ternary Complex Of
Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa
Length = 436
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 168/357 (47%), Gaps = 30/357 (8%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
++I G GYVG ++ + EV VD+S ++I+ N + PI EPGL+ +++Q
Sbjct: 1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG 58
Query: 62 RGK-NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADV 116
R L +TD +K V ++D+ F+ V TP+K G DL Y E+ R I +
Sbjct: 59 RQTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREK 113
Query: 117 SKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDR 173
S+ +VV + +P + ++ S G+ F + +NPEFL E TAI+D P
Sbjct: 114 SERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPM 173
Query: 174 VLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233
+IG + G L+++Y + I+ + AE+ K N + A +++ N +
Sbjct: 174 TVIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227
Query: 234 SALCEATGANVSQVAFAVGTDSRIGPK--FLNASVGFGGSCFQKDILNLVYICECNGLPE 291
+ +A G + +V + D ++ ++ FGGSC KD+ L Y + L
Sbjct: 228 GNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTY--RASQLDV 285
Query: 292 VAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
+++ N Q + + + + +K+ +LG +FK T D RE+P ++
Sbjct: 286 EHPMLGSLMRSNSNQVQKAFD-----LITSHDTRKVGLLGLSFKAGTDDLRESPLVE 337
>pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|B Chain B, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|C Chain C, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MFZ|D Chain D, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose
Dehydrogenase From P. Aeruginosa
pdb|1MUU|A Chain A, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|B Chain B, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|C Chain C, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
pdb|1MUU|D Chain D, 2.0 A Crystal Structure Of Gdp-Mannose Dehydrogenase
Length = 436
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 164/356 (46%), Gaps = 30/356 (8%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCR 62
+I G GYVG ++ + EV VD+S ++I+ N + PI EPGL+ +++Q R
Sbjct: 2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59
Query: 63 GK-NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVS 117
L +TD +K V ++D+ F+ V TP+K G DL Y E+ R I + S
Sbjct: 60 QTGRLSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKS 114
Query: 118 KSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRV 174
+ +VV + +P + ++ S G+ F + +NPEFL E TAI+D P
Sbjct: 115 ERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPXT 174
Query: 175 LIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234
+IG + G L+++Y + I+ + AE K N + A +++ N +
Sbjct: 175 VIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEXIKYTCNVWHAAKVTFANEIG 228
Query: 235 ALCEATGANVSQVAFAVGTDSRIGPK--FLNASVGFGGSCFQKDILNLVYICECNGLPEV 292
+ +A G + +V + D ++ + FGGSC KD+ L Y + L
Sbjct: 229 NIAKAVGVDGREVXDVICQDHKLNLSRYYXRPGFAFGGSCLPKDVRALTY--RASQLDVE 286
Query: 293 AEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
+ + N Q + + + + +K+ +LG +FK T D RE+P ++
Sbjct: 287 HPXLGSLXRSNSNQVQKAFD-----LITSHDTRKVGLLGLSFKAGTDDLRESPLVE 337
>pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
pdb|3G79|B Chain B, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic
Acid Dehydrogenase From Methanosarcina Mazei Go1
Length = 478
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/367 (26%), Positives = 164/367 (44%), Gaps = 34/367 (9%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAV-----VDISVSRINAWNSDQLPIY--EPGLD 55
KI +G GYVG P AV+ P E + S +I N + P+ EPGL+
Sbjct: 20 KIGVLGMGYVGIPA-AVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLE 78
Query: 56 GVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD 115
++ + F T +SE D V +++ TP D + R +
Sbjct: 79 ELIGKVVKAGKFECTPDFSRISELDAVTLAIQTPFANP---KDLEPDFSALIDGIRNVGK 135
Query: 116 VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIK----FQILSNPEFLAEGTAIQDLFNP 171
K +VV +ST+ T E + K + G+K F + PE + G ++++
Sbjct: 136 YLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREH 195
Query: 172 DRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231
DR+ +GG + ++AV ++Y+ + +++ + +AE++K A N F +I+++N
Sbjct: 196 DRI-VGGIDEASTKRAV----ELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAIN 250
Query: 232 AMSALCEATGANVSQVAFAVGTDSRIGPKFLNA----SVGFGGSCFQKDILNLVYICECN 287
++ CEA G NV V G DS G A G GG C KD +L +
Sbjct: 251 QLALYCEAMGINVYDV--RTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIG 308
Query: 288 ----GLPEVAE-YWKQVIKINDYQKSRFVNRVVAS---MFNTVSNKKIAVLGFAFKKDTG 339
PE A+ + K+ND+ + N VA+ + + K+A+LG+AF KD+
Sbjct: 309 RGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSD 368
Query: 340 DTRETPA 346
D R TP+
Sbjct: 369 DARNTPS 375
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 135/286 (47%), Gaps = 28/286 (9%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+KI G GYVG +IA EV +DI ++++ N PI + + + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQNH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAA--RVIADVSK 118
K L F +KH + + +V + TPT Y+ ++ VI DV++
Sbjct: 93 ---KPLNFRATTDKHDAYRNADYVIIATPTDYD-------PKTNYFNTSTVEAVIRDVTE 142
Query: 119 --SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
+ +++ KST+PV I++ L GI I S PEFL EG A+ D +P R++I
Sbjct: 143 INPNAVMIIKSTIPVGFTRDIKERL-----GIDNVIFS-PEFLREGRALYDNLHPSRIVI 196
Query: 177 GGRETPEGQKAVKALKD-VYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G R + ++ LK+ +P L T+ AE KL AN +LA R++ N + +
Sbjct: 197 GER-SARAERFADLLKEGAIKQDIP---TLFTDSTEAEAIKLFANTYLALRVAYFNELDS 252
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLV 281
E+ G N Q+ V D RIG + N S G+GG C KD L+
Sbjct: 253 YAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 298
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal
Six- Histidine Tag
Length = 432
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 135/286 (47%), Gaps = 28/286 (9%)
Query: 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60
+KI G GYVG +IA EV +DI ++++ N PI + + + +
Sbjct: 36 FMKITISGTGYVGLSNGVLIAQNH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAA--RVIADVSK 118
K L F +KH + + +V + TPT Y+ ++ VI DV++
Sbjct: 93 ---KPLNFRATTDKHDAYRNADYVIIATPTDYD-------PKTNYFNTSTVEAVIRDVTE 142
Query: 119 --SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLI 176
+ +++ KST+PV I++ L GI I S PEFL EG A+ D +P R++I
Sbjct: 143 INPNAVMIIKSTIPVGFTRDIKERL-----GIDNVIFS-PEFLREGRALYDNLHPSRIVI 196
Query: 177 GGRETPEGQKAVKALKD-VYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235
G R + ++ LK+ +P L T+ AE KL AN +LA R++ N + +
Sbjct: 197 GER-SARAERFADLLKEGAIKQDIP---TLFTDSTEAEAIKLFANTYLALRVAYFNELDS 252
Query: 236 LCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLV 281
E+ G N Q+ V D RIG + N S G+GG C KD L+
Sbjct: 253 YAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL 298
>pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJL|B Chain B, Native Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From Staphylococcus Aureus
pdb|3OJO|A Chain A, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
pdb|3OJO|B Chain B, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
Dehydrogenase Cap5o From S. Aureus
Length = 431
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 156/351 (44%), Gaps = 29/351 (8%)
Query: 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC- 61
K+ +G GY+G PT + A ++V VDI+ I+ + Q+ I EPGL V ++
Sbjct: 13 KLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL 70
Query: 62 -RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSD 120
GK L ST E +D+ ++V TP ++ D++ A I K
Sbjct: 71 SSGK-LKVSTTPEA----SDVFIIAVPTPNNDDQY---RSCDISLVMRALDSILPFLKKG 122
Query: 121 KIVVEKSTVPVKTAEAIEKILTHN---SKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIG 177
++ +ST+ KT + K + N + G ++ PE + G +++L + +R+ IG
Sbjct: 123 NTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRI-IG 181
Query: 178 GRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237
G + ++A K VY +V + ++ T+ +AE+SKL N + I+ N ++ +C
Sbjct: 182 GVT----KACIEAGKRVYRTFV-QGEMIETDARTAEMSKLMENTYRDVNIALANELTKIC 236
Query: 238 EATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWK 297
NV V R+ G GG C D ++ PE A+ +
Sbjct: 237 NNLNINVLDVIEMANKHPRVN--IHQPGPGVGGHCLAVDPYFIIA-----KDPENAKLIQ 289
Query: 298 QVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAID 348
+IN+ + V+ + +S K+ V G +K D D RE+PA D
Sbjct: 290 TGREINNSMPAYVVD-TTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFD 339
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 163/360 (45%), Gaps = 40/360 (11%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+KI G+GYVG +++L+ EV +VDI S+++ N+ PI + ++ +K
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIEYYLK-S 56
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
+ ++ + D + EA++V ++ TPT D + E+ + + V+
Sbjct: 57 KQLSIKATLDSKAAYKEAELVIIA--TPTNYNS--RINYFDTQHVETVIKEVLSVNSHAT 112
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSKGIKFQ---ILSNPEFLAEGTAIQDLFNPDRVLIGG 178
+++ KST+P+ + + KFQ I+ +PEFL E A+ D P R+++
Sbjct: 113 LII-KSTIPIGFITEMRQ---------KFQTDRIIFSPEFLRESKALYDNLYPSRIIVSC 162
Query: 179 RETPEGQKAVKALKDVYA---------HWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229
E + VKA + +A + VP +L AE KL AN +LA R++
Sbjct: 163 EENDSPK--VKADAEKFALLLKSAAKKNNVP---VLIMGASEAEAVKLFANTYLALRVAY 217
Query: 230 VNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGL 289
N + E+ N + + D RIG + N S G+GG C KD L + N +
Sbjct: 218 FNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQL--LANYNNI 275
Query: 290 PEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIA-VLGFAFKKDTGDTRETPAID 348
P+ + ++ N+ +KS +++ + S K+ V K ++ + RE+ D
Sbjct: 276 PQTL--IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKD 333
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 162/360 (45%), Gaps = 40/360 (11%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC 61
+KI G+GYVG +++L+ EV +VDI S+++ N+ PI + ++ +K
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIEYYLK-S 56
Query: 62 RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDK 121
+ ++ + D + EA++V ++ TPT D + E+ + + V+
Sbjct: 57 KQLSIKATLDSKAAYKEAELVIIA--TPTNYNS--RINYFDTQHVETVIKEVLSVNSHAT 112
Query: 122 IVVEKSTVPVKTAEAIEKILTHNSKGIKFQ---ILSNPEFLAEGTAIQDLFNPDRVLIGG 178
+++ KST+P+ + + KFQ I+ +PEFL E A+ D P R+++
Sbjct: 113 LII-KSTIPIGFITEMRQ---------KFQTDRIIFSPEFLRESKALYDNLYPSRIIVSC 162
Query: 179 RETPEGQKAVKALKDVYA---------HWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229
E + VKA + +A + VP +L AE KL AN +LA R++
Sbjct: 163 EENDSPK--VKADAEKFALLLKSAAKKNNVP---VLIMGASEAEAVKLFANTYLALRVAY 217
Query: 230 VNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGL 289
N + E+ N + + D RIG + N S G+GG KD L + N +
Sbjct: 218 FNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL--LANYNNI 275
Query: 290 PEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIA-VLGFAFKKDTGDTRETPAID 348
P+ + ++ N+ +KS +++ + S K+ V K ++ + RE+ D
Sbjct: 276 PQTL--IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKD 333
>pdb|3IQD|B Chain B, Structure Of Octopine-Dehydrogenase In Complex With Nadh
And Agmatine
Length = 404
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN----SDQLPIYEPGLDGV 57
VK+C G G G T++ +A +EV V+ + W +D+L + DG
Sbjct: 3 VKVCVCGGGN-GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGT 61
Query: 58 VKQCRGKNLFFSTDVEKHVSEADIVFVSV 86
+ + + + D E +S AD+V ++V
Sbjct: 62 QTEVKSRPKVITKDPEIAISGADVVILTV 90
>pdb|3C7A|A Chain A, A Structural Basis For Substrate And Stereo Selectivity
In Octopine Dehydrogenase (Odh-Nadh)
pdb|3C7D|B Chain B, A Structural Basis For Substrate And Stereo Selectivity
In Octopine Dehydrogenase (Odh-Nadh-Pyruvate)
pdb|3C7C|B Chain B, A Structural Basis For Substrate And Stereo Selectivity
In Octopine Dehydrogenase (Odh-Nadh-L-Arginine)
Length = 404
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN----SDQLPIYEPGLDGV 57
VK+C G G G T++ +A +EV V+ + W +D+L + DG
Sbjct: 3 VKVCVCGGGN-GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGT 61
Query: 58 VKQCRGKNLFFSTDVEKHVSEADIVFVSV 86
+ + + + D E +S AD+V ++V
Sbjct: 62 QTEVKSRPKVITKDPEIAISGADVVILTV 90
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 111 RVIADVSKSDK-----IVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSN----PEFLAE 161
RVI D++ + + + TV K +A+E L G + + + N FLAE
Sbjct: 97 RVILDLTPNYRGENSWFSTQVDTVATKVKDALEFWLQAGVDGFQVRDIENLKDASSFLAE 156
Query: 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALK 192
I F+ DR+LI G + + Q+ + L+
Sbjct: 157 WQNITKGFSEDRLLIAGTNSSDLQQILSLLE 187
>pdb|2DH2|A Chain A, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 111 RVIADVSKSDK-----IVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSN----PEFLAE 161
RVI D++ + + + TV K +A+E L G + + + N FLAE
Sbjct: 97 RVILDLTPNYRGENSWFSTQVDTVATKVKDALEFWLQAGVDGFQVRDIENLKDASSFLAE 156
Query: 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALK 192
I F+ DR+LI G + + Q+ + L+
Sbjct: 157 WQNITKGFSEDRLLIAGTNSSDLQQILSLLE 187
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 15 PTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP-----IYEP---GLDGVVKQCRGKNL 66
P M V A+ P ++VAV + +I+ + LP I+ P GLDG K K
Sbjct: 152 PIMQVNAIHYPGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGEGKMSSSKGN 211
Query: 67 FFSTD 71
F + D
Sbjct: 212 FIAVD 216
>pdb|3GDF|A Chain A, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDF|B Chain B, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDF|C Chain C, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDF|D Chain D, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDG|A Chain A, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDG|B Chain B, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDG|C Chain C, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum.
pdb|3GDG|D Chain D, Crystal Structure Of The Nadp-Dependent Mannitol
Dehydrogenase From Cladosporium Herbarum
Length = 267
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 26 SIEVAVVDISVSRINAWNSDQL--PIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82
SI +D +S + QL + G DG+ K+ +G ++F++D + + AD++
Sbjct: 201 SISPGYIDTGLSDFVPKETQQLWHSMIPMGRDGLAKELKGAYVYFASDASTYTTGADLL 259
>pdb|3MFF|A Chain A, 1f1e8hu Tcr
pdb|3MFF|C Chain C, 1f1e8hu Tcr
Length = 200
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 231 NAMSALCEATGANVSQVAFAVGTDSRIGPKFLN 263
++ + C ATGAN ++ F GT R+ P N
Sbjct: 82 DSATYFCAATGANTGKLTFGHGTILRVHPNIQN 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,324,069
Number of Sequences: 62578
Number of extensions: 400090
Number of successful extensions: 1306
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 29
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)