Query 017997
Match_columns 362
No_of_seqs 349 out of 3181
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:15:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1004 Ugd Predicted UDP-gluc 100.0 1.4E-86 3E-91 615.2 39.0 342 2-358 1-344 (414)
2 COG0677 WecC UDP-N-acetyl-D-ma 100.0 4.2E-85 9E-90 602.3 33.8 340 2-359 10-357 (436)
3 PLN02353 probable UDP-glucose 100.0 2.7E-83 5.8E-88 627.5 44.8 358 1-358 1-358 (473)
4 PRK15057 UDP-glucose 6-dehydro 100.0 6.4E-74 1.4E-78 551.3 40.7 328 2-358 1-330 (388)
5 PRK15182 Vi polysaccharide bio 100.0 3E-73 6.5E-78 552.7 41.3 336 1-358 6-348 (425)
6 PRK11064 wecC UDP-N-acetyl-D-m 100.0 5.4E-72 1.2E-76 544.2 40.8 335 1-359 3-355 (415)
7 KOG2666 UDP-glucose/GDP-mannos 100.0 9.3E-72 2E-76 496.5 32.8 359 1-359 1-359 (481)
8 TIGR03026 NDP-sugDHase nucleot 100.0 1.2E-70 2.6E-75 536.5 42.9 342 2-358 1-347 (411)
9 PF03721 UDPG_MGDP_dh_N: UDP-g 100.0 4.8E-40 1E-44 285.7 18.1 182 2-194 1-185 (185)
10 COG2084 MmsB 3-hydroxyisobutyr 100.0 4.4E-32 9.5E-37 247.4 25.9 252 2-303 1-265 (286)
11 TIGR01505 tartro_sem_red 2-hyd 100.0 8.7E-30 1.9E-34 238.1 25.8 249 3-301 1-261 (291)
12 PRK15461 NADH-dependent gamma- 100.0 1E-29 2.2E-34 237.8 24.2 253 1-303 1-266 (296)
13 PRK11559 garR tartronate semia 100.0 2.8E-29 6.1E-34 235.3 27.0 253 1-303 2-266 (296)
14 TIGR01692 HIBADH 3-hydroxyisob 100.0 2.3E-28 4.9E-33 228.1 26.0 247 6-302 1-266 (288)
15 KOG0409 Predicted dehydrogenas 100.0 1.1E-28 2.5E-33 220.8 22.1 255 2-303 36-300 (327)
16 PRK15059 tartronate semialdehy 100.0 3.4E-28 7.3E-33 226.7 25.7 249 2-301 1-261 (292)
17 PF00984 UDPG_MGDP_dh: UDP-glu 100.0 1.7E-28 3.8E-33 189.0 12.7 96 209-306 1-96 (96)
18 PLN02858 fructose-bisphosphate 100.0 5.4E-26 1.2E-30 247.2 31.5 253 2-302 5-270 (1378)
19 PLN02858 fructose-bisphosphate 99.9 8.7E-26 1.9E-30 245.5 28.1 254 1-302 324-590 (1378)
20 PLN02350 phosphogluconate dehy 99.9 1.8E-25 4E-30 219.6 27.7 258 1-301 6-292 (493)
21 PRK12490 6-phosphogluconate de 99.9 2.6E-25 5.6E-30 208.4 26.3 249 2-300 1-267 (299)
22 PRK00094 gpsA NAD(P)H-dependen 99.9 1.9E-25 4E-30 212.0 21.8 280 1-314 1-322 (325)
23 PRK09599 6-phosphogluconate de 99.9 2.9E-23 6.3E-28 194.8 28.2 248 2-299 1-267 (301)
24 COG0240 GpsA Glycerol-3-phosph 99.9 8.3E-23 1.8E-27 188.2 22.1 221 1-254 1-241 (329)
25 TIGR00872 gnd_rel 6-phosphoglu 99.9 3.5E-22 7.6E-27 187.1 26.1 248 2-300 1-266 (298)
26 PTZ00142 6-phosphogluconate de 99.9 3.1E-22 6.7E-27 196.7 23.9 210 1-252 1-219 (470)
27 PRK14618 NAD(P)H-dependent gly 99.9 1.5E-20 3.3E-25 178.6 23.1 275 1-315 4-321 (328)
28 PF03446 NAD_binding_2: NAD bi 99.9 1.4E-21 3E-26 167.2 13.9 152 1-199 1-154 (163)
29 TIGR00873 gnd 6-phosphoglucona 99.9 1.3E-20 2.9E-25 185.2 21.7 206 3-251 1-215 (467)
30 PRK06129 3-hydroxyacyl-CoA deh 99.9 1.9E-19 4.2E-24 169.5 23.8 252 1-297 2-270 (308)
31 PRK12439 NAD(P)H-dependent gly 99.8 1.8E-19 3.9E-24 171.8 22.0 220 1-253 7-246 (341)
32 PRK14619 NAD(P)H-dependent gly 99.8 2.5E-19 5.4E-24 168.8 19.9 252 2-315 5-299 (308)
33 TIGR03376 glycerol3P_DH glycer 99.8 5.5E-19 1.2E-23 167.2 20.8 221 3-253 1-258 (342)
34 PTZ00345 glycerol-3-phosphate 99.8 6.1E-19 1.3E-23 168.0 21.0 218 2-253 12-267 (365)
35 PRK08229 2-dehydropantoate 2-r 99.8 1.3E-18 2.8E-23 166.3 21.7 264 1-300 2-310 (341)
36 PRK09287 6-phosphogluconate de 99.8 1.9E-18 4.1E-23 169.4 22.3 196 12-251 1-207 (459)
37 PRK12557 H(2)-dependent methyl 99.8 3.8E-18 8.3E-23 161.7 23.0 261 2-305 1-290 (342)
38 PRK14620 NAD(P)H-dependent gly 99.8 1.4E-17 3.1E-22 158.1 25.3 216 2-249 1-239 (326)
39 PRK09260 3-hydroxybutyryl-CoA 99.8 1.8E-18 3.8E-23 161.5 14.4 211 1-253 1-219 (288)
40 PRK07066 3-hydroxybutyryl-CoA 99.8 1.5E-17 3.2E-22 156.1 19.2 210 2-255 8-224 (321)
41 COG1023 Gnd Predicted 6-phosph 99.8 1.5E-16 3.2E-21 138.5 22.7 250 2-301 1-268 (300)
42 PRK07531 bifunctional 3-hydrox 99.8 2.7E-17 5.7E-22 164.2 20.1 211 1-255 4-221 (495)
43 PRK12921 2-dehydropantoate 2-r 99.8 1.8E-16 3.8E-21 149.2 23.7 212 2-244 1-234 (305)
44 PRK08268 3-hydroxy-acyl-CoA de 99.8 7.3E-17 1.6E-21 161.0 20.4 201 2-253 8-224 (507)
45 PRK08507 prephenate dehydrogen 99.7 7.3E-16 1.6E-20 142.9 24.0 201 2-252 1-207 (275)
46 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 1.5E-16 3.3E-21 158.2 19.8 210 1-253 5-222 (503)
47 PRK07417 arogenate dehydrogena 99.7 5.5E-16 1.2E-20 144.0 20.9 187 2-233 1-192 (279)
48 PF01210 NAD_Gly3P_dh_N: NAD-d 99.7 2E-17 4.3E-22 140.5 10.2 151 3-180 1-153 (157)
49 PRK07530 3-hydroxybutyryl-CoA 99.7 7E-16 1.5E-20 144.3 21.1 204 2-253 5-221 (292)
50 PRK08293 3-hydroxybutyryl-CoA 99.7 7.2E-16 1.6E-20 143.8 20.0 213 1-253 3-223 (287)
51 PRK06130 3-hydroxybutyryl-CoA 99.7 1E-15 2.2E-20 144.5 18.4 211 1-254 4-219 (311)
52 PRK07819 3-hydroxybutyryl-CoA 99.7 2.7E-15 5.9E-20 139.6 19.6 204 2-253 6-224 (286)
53 COG1250 FadB 3-hydroxyacyl-CoA 99.7 1.8E-15 4E-20 139.8 17.4 211 1-254 3-221 (307)
54 PRK06035 3-hydroxyacyl-CoA deh 99.7 3.2E-15 6.8E-20 139.8 19.3 209 2-253 4-223 (291)
55 PRK05808 3-hydroxybutyryl-CoA 99.7 4.2E-15 9.2E-20 138.3 19.6 203 1-253 3-220 (282)
56 PLN02545 3-hydroxybutyryl-CoA 99.7 5.7E-15 1.2E-19 138.3 20.1 205 2-253 5-221 (295)
57 PRK08655 prephenate dehydrogen 99.7 7.1E-14 1.5E-18 137.3 27.7 202 2-252 1-203 (437)
58 PRK06522 2-dehydropantoate 2-r 99.6 2.2E-14 4.7E-19 134.8 20.5 209 2-244 1-231 (304)
59 PRK11730 fadB multifunctional 99.6 2.2E-14 4.7E-19 148.9 19.5 204 1-253 313-529 (715)
60 PF02737 3HCDH_N: 3-hydroxyacy 99.6 2.5E-15 5.4E-20 130.3 9.3 171 3-208 1-179 (180)
61 TIGR02437 FadB fatty oxidation 99.6 3.9E-14 8.5E-19 146.7 18.8 204 1-253 313-529 (714)
62 PRK06249 2-dehydropantoate 2-r 99.6 2.4E-13 5.2E-18 128.4 22.6 261 2-297 6-299 (313)
63 PRK11199 tyrA bifunctional cho 99.6 4E-13 8.7E-18 129.6 24.2 180 1-249 98-279 (374)
64 TIGR02441 fa_ox_alpha_mit fatt 99.6 4.2E-14 9.1E-19 146.9 17.7 207 1-251 335-549 (737)
65 TIGR01724 hmd_rel H2-forming N 99.6 2.9E-13 6.2E-18 124.2 21.0 160 2-205 1-191 (341)
66 PLN02688 pyrroline-5-carboxyla 99.6 2.6E-13 5.7E-18 125.2 21.1 195 2-253 1-203 (266)
67 TIGR02440 FadJ fatty oxidation 99.6 7.7E-14 1.7E-18 144.5 18.8 207 1-251 304-519 (699)
68 PRK11154 fadJ multifunctional 99.6 1E-13 2.3E-18 143.8 19.3 208 1-252 309-525 (708)
69 PRK07502 cyclohexadienyl dehyd 99.5 1.4E-12 3E-17 122.9 22.6 168 2-210 7-180 (307)
70 COG0362 Gnd 6-phosphogluconate 99.5 2.5E-13 5.5E-18 126.3 16.7 207 2-252 4-220 (473)
71 PRK07679 pyrroline-5-carboxyla 99.5 2.3E-12 4.9E-17 119.8 21.0 197 2-253 4-208 (279)
72 COG0287 TyrA Prephenate dehydr 99.5 1E-11 2.2E-16 114.4 24.7 167 1-211 3-173 (279)
73 PRK11880 pyrroline-5-carboxyla 99.5 3E-12 6.5E-17 118.2 21.3 197 1-252 2-203 (267)
74 PRK06545 prephenate dehydrogen 99.5 2.2E-12 4.8E-17 124.0 20.8 177 2-218 1-184 (359)
75 PRK12491 pyrroline-5-carboxyla 99.5 3.8E-12 8.2E-17 117.6 19.9 197 2-252 3-205 (272)
76 COG1893 ApbA Ketopantoate redu 99.5 1.6E-11 3.4E-16 115.2 22.3 208 2-242 1-231 (307)
77 PLN02256 arogenate dehydrogena 99.4 7.1E-11 1.5E-15 110.6 25.6 165 2-211 37-206 (304)
78 PRK08269 3-hydroxybutyryl-CoA 99.4 2.8E-12 6.1E-17 120.7 15.9 202 12-254 1-218 (314)
79 PRK06476 pyrroline-5-carboxyla 99.4 1.5E-11 3.3E-16 112.9 19.9 190 2-252 1-194 (258)
80 PRK08818 prephenate dehydrogen 99.4 4.9E-11 1.1E-15 114.0 23.7 156 2-218 5-165 (370)
81 PRK05708 2-dehydropantoate 2-r 99.4 6.9E-12 1.5E-16 118.0 16.1 207 2-243 3-229 (305)
82 PRK07680 late competence prote 99.4 2.6E-11 5.5E-16 112.4 19.6 153 2-206 1-157 (273)
83 KOG2304 3-hydroxyacyl-CoA dehy 99.4 8.9E-13 1.9E-17 114.0 7.9 211 2-255 12-236 (298)
84 PRK14806 bifunctional cyclohex 99.4 5.4E-11 1.2E-15 125.0 21.1 170 2-211 4-179 (735)
85 PLN02712 arogenate dehydrogena 99.3 9.2E-10 2E-14 113.3 25.9 165 2-213 370-541 (667)
86 PRK06928 pyrroline-5-carboxyla 99.3 1.5E-10 3.2E-15 107.4 17.7 149 1-199 1-155 (277)
87 PRK07634 pyrroline-5-carboxyla 99.3 5.3E-10 1.1E-14 101.8 20.3 194 2-252 5-207 (245)
88 COG0345 ProC Pyrroline-5-carbo 99.3 3.9E-10 8.4E-15 102.6 19.1 196 1-252 1-202 (266)
89 PLN02712 arogenate dehydrogena 99.3 2.5E-09 5.3E-14 110.2 26.9 165 2-211 53-222 (667)
90 KOG2305 3-hydroxyacyl-CoA dehy 99.3 5.1E-11 1.1E-15 103.3 12.1 209 2-254 4-224 (313)
91 KOG2653 6-phosphogluconate deh 99.3 1.8E-10 3.8E-15 105.9 15.5 207 2-252 7-224 (487)
92 TIGR01915 npdG NADPH-dependent 99.3 8.1E-10 1.8E-14 99.0 19.2 100 2-128 1-102 (219)
93 PF03807 F420_oxidored: NADP o 99.2 3.5E-11 7.7E-16 93.2 8.5 87 3-125 1-92 (96)
94 TIGR00745 apbA_panE 2-dehydrop 99.2 3.8E-10 8.1E-15 105.4 17.1 201 11-243 1-223 (293)
95 PTZ00431 pyrroline carboxylate 99.2 6.5E-10 1.4E-14 102.2 17.8 193 2-252 4-198 (260)
96 PF02153 PDH: Prephenate dehyd 99.2 3.6E-09 7.8E-14 97.2 19.5 178 16-233 1-183 (258)
97 TIGR01763 MalateDH_bact malate 99.1 3.6E-10 7.9E-15 106.1 11.4 118 2-134 2-124 (305)
98 KOG2711 Glycerol-3-phosphate d 99.1 2.6E-09 5.5E-14 98.3 15.9 207 2-239 22-264 (372)
99 PF10727 Rossmann-like: Rossma 99.1 2.5E-10 5.4E-15 92.7 7.7 92 2-128 11-105 (127)
100 COG2085 Predicted dinucleotide 99.1 2.4E-09 5.3E-14 93.0 13.8 165 1-210 1-182 (211)
101 COG4007 Predicted dehydrogenas 99.1 4.9E-08 1.1E-12 86.4 21.5 248 1-290 1-276 (340)
102 PRK05479 ketol-acid reductoiso 99.0 2.3E-08 5E-13 94.1 19.5 151 2-200 18-174 (330)
103 PRK12480 D-lactate dehydrogena 99.0 8.5E-09 1.8E-13 97.8 14.9 105 2-144 147-251 (330)
104 PRK06223 malate dehydrogenase; 99.0 3.6E-09 7.8E-14 99.7 10.2 120 1-133 2-124 (307)
105 cd05294 LDH-like_MDH_nadp A la 98.9 3.8E-09 8.2E-14 99.4 9.1 121 2-134 1-129 (309)
106 PRK07574 formate dehydrogenase 98.8 5.9E-08 1.3E-12 93.5 14.5 109 2-144 193-301 (385)
107 PRK13243 glyoxylate reductase; 98.8 5.1E-08 1.1E-12 92.7 13.5 107 2-144 151-257 (333)
108 PLN03139 formate dehydrogenase 98.8 9.6E-08 2.1E-12 92.0 14.0 109 2-144 200-308 (386)
109 PRK08605 D-lactate dehydrogena 98.8 3.1E-08 6.7E-13 94.2 10.4 107 2-144 147-253 (332)
110 TIGR00465 ilvC ketol-acid redu 98.8 6.5E-07 1.4E-11 84.2 18.0 151 2-200 4-160 (314)
111 PRK13304 L-aspartate dehydroge 98.8 1.1E-07 2.4E-12 87.6 12.4 69 1-87 1-70 (265)
112 PF02558 ApbA: Ketopantoate re 98.7 1.5E-08 3.3E-13 85.1 5.7 114 4-141 1-114 (151)
113 cd05292 LDH_2 A subgroup of L- 98.7 1.3E-07 2.8E-12 89.1 12.5 110 2-132 1-120 (308)
114 PRK06436 glycerate dehydrogena 98.7 1.2E-07 2.5E-12 88.9 11.3 104 2-144 123-226 (303)
115 PRK13302 putative L-aspartate 98.7 1.8E-07 3.8E-12 86.5 11.9 114 2-152 7-121 (271)
116 PRK13403 ketol-acid reductoiso 98.7 1E-07 2.2E-12 88.6 10.0 91 2-129 17-108 (335)
117 cd01065 NAD_bind_Shikimate_DH 98.7 6.9E-08 1.5E-12 81.4 8.2 111 2-144 20-131 (155)
118 PRK06444 prephenate dehydrogen 98.7 8.1E-06 1.7E-10 71.6 21.3 191 2-319 1-193 (197)
119 cd01339 LDH-like_MDH L-lactate 98.7 7E-08 1.5E-12 90.6 8.8 108 4-125 1-114 (300)
120 PF00056 Ldh_1_N: lactate/mala 98.7 2.4E-07 5.3E-12 77.0 10.9 118 2-133 1-123 (141)
121 COG0111 SerA Phosphoglycerate 98.6 6.7E-07 1.4E-11 84.4 13.2 134 2-175 143-278 (324)
122 PRK13581 D-3-phosphoglycerate 98.6 7.2E-07 1.6E-11 90.0 13.7 107 2-144 141-247 (526)
123 cd00300 LDH_like L-lactate deh 98.6 6.7E-07 1.4E-11 84.0 11.8 115 4-134 1-121 (300)
124 TIGR01327 PGDH D-3-phosphoglyc 98.6 1.3E-06 2.8E-11 88.2 14.6 108 2-144 139-246 (525)
125 PRK15469 ghrA bifunctional gly 98.5 3.7E-07 8.1E-12 86.0 9.4 107 2-144 137-243 (312)
126 PF01408 GFO_IDH_MocA: Oxidore 98.5 1.3E-06 2.9E-11 70.1 11.4 70 2-89 1-73 (120)
127 PF02826 2-Hacid_dh_C: D-isome 98.5 1.8E-06 3.9E-11 74.7 12.1 108 2-144 37-144 (178)
128 cd05291 HicDH_like L-2-hydroxy 98.5 2E-06 4.3E-11 81.0 12.8 117 2-133 1-122 (306)
129 PF14833 NAD_binding_11: NAD-b 98.5 1.4E-06 3.1E-11 70.5 10.1 90 211-302 2-101 (122)
130 TIGR02853 spore_dpaA dipicolin 98.5 1E-06 2.2E-11 82.1 10.3 96 2-134 152-247 (287)
131 cd05297 GH4_alpha_glucosidase_ 98.5 1.3E-06 2.9E-11 85.7 11.4 81 2-90 1-86 (423)
132 cd05293 LDH_1 A subgroup of L- 98.4 1.2E-06 2.7E-11 82.4 10.5 118 2-133 4-125 (312)
133 cd01075 NAD_bind_Leu_Phe_Val_D 98.4 1.1E-05 2.4E-10 71.1 15.8 41 2-44 29-69 (200)
134 PTZ00082 L-lactate dehydrogena 98.4 1.1E-06 2.3E-11 83.2 9.9 111 2-125 7-126 (321)
135 TIGR00112 proC pyrroline-5-car 98.4 1.3E-05 2.8E-10 73.1 16.5 175 26-252 9-185 (245)
136 PRK15076 alpha-galactosidase; 98.4 3.1E-06 6.8E-11 83.2 12.5 81 1-89 1-86 (431)
137 PLN02928 oxidoreductase family 98.4 4.4E-06 9.6E-11 79.9 12.9 120 2-144 160-279 (347)
138 PRK11790 D-3-phosphoglycerate 98.4 6E-06 1.3E-10 80.7 13.2 105 2-144 152-256 (409)
139 PRK08410 2-hydroxyacid dehydro 98.4 9.4E-06 2E-10 76.6 14.1 103 2-143 146-248 (311)
140 cd00650 LDH_MDH_like NAD-depen 98.4 5E-06 1.1E-10 76.6 12.0 121 4-135 1-126 (263)
141 PRK08306 dipicolinate synthase 98.3 4.8E-06 1E-10 78.0 11.2 95 2-133 153-247 (296)
142 COG1052 LdhA Lactate dehydroge 98.3 1.2E-05 2.6E-10 76.0 13.9 107 2-144 147-253 (324)
143 PRK15409 bifunctional glyoxyla 98.3 1.2E-05 2.6E-10 76.1 13.7 108 2-144 146-253 (323)
144 PTZ00117 malate dehydrogenase; 98.3 3E-06 6.5E-11 80.2 9.5 117 2-132 6-126 (319)
145 PRK00257 erythronate-4-phospha 98.3 3.4E-06 7.4E-11 81.3 9.9 108 2-144 117-224 (381)
146 PRK14194 bifunctional 5,10-met 98.3 2.3E-06 5.1E-11 79.3 8.4 72 2-128 160-232 (301)
147 PF07991 IlvN: Acetohydroxy ac 98.3 4.7E-06 1E-10 69.7 9.3 89 2-127 5-95 (165)
148 KOG2380 Prephenate dehydrogena 98.2 4.7E-05 1E-09 70.4 15.4 151 3-200 54-213 (480)
149 cd05290 LDH_3 A subgroup of L- 98.2 1.3E-05 2.7E-10 75.4 11.8 118 3-134 1-125 (307)
150 PLN02602 lactate dehydrogenase 98.2 9E-06 2E-10 77.6 10.7 118 2-133 38-159 (350)
151 PLN02306 hydroxypyruvate reduc 98.2 2.7E-05 5.8E-10 75.4 13.9 121 2-143 166-288 (386)
152 COG0039 Mdh Malate/lactate deh 98.2 1.1E-05 2.4E-10 75.1 10.2 123 2-136 1-126 (313)
153 PRK00066 ldh L-lactate dehydro 98.2 1.6E-05 3.5E-10 75.1 11.3 114 2-133 7-127 (315)
154 PRK06932 glycerate dehydrogena 98.2 2.1E-05 4.5E-10 74.3 12.1 103 2-144 148-250 (314)
155 TIGR02371 ala_DH_arch alanine 98.1 1.3E-05 2.8E-10 76.1 9.8 99 2-132 129-227 (325)
156 PRK06141 ornithine cyclodeamin 98.1 1.3E-05 2.8E-10 75.8 9.7 75 2-89 126-200 (314)
157 PRK15438 erythronate-4-phospha 98.1 1.3E-05 2.9E-10 77.1 9.9 108 2-144 117-224 (378)
158 PRK00048 dihydrodipicolinate r 98.1 1.6E-05 3.5E-10 73.0 9.7 67 1-87 1-69 (257)
159 PRK06487 glycerate dehydrogena 98.1 6.5E-05 1.4E-09 71.0 13.2 102 2-144 149-250 (317)
160 TIGR00036 dapB dihydrodipicoli 98.0 3.3E-05 7.1E-10 71.3 10.3 74 1-87 1-77 (266)
161 PF01113 DapB_N: Dihydrodipico 98.0 2E-05 4.4E-10 64.0 8.0 73 2-86 1-75 (124)
162 COG1748 LYS9 Saccharopine dehy 98.0 2.6E-05 5.7E-10 74.8 9.7 135 1-159 1-159 (389)
163 PRK13303 L-aspartate dehydroge 98.0 4.6E-05 9.9E-10 70.3 10.7 70 1-88 1-71 (265)
164 PRK14188 bifunctional 5,10-met 98.0 2.1E-05 4.5E-10 73.1 8.1 71 2-128 159-231 (296)
165 cd01338 MDH_choloroplast_like 98.0 4.8E-05 1E-09 72.0 10.1 116 2-132 3-132 (322)
166 COG0569 TrkA K+ transport syst 98.0 3.5E-05 7.5E-10 69.3 8.5 41 2-44 1-41 (225)
167 PRK05442 malate dehydrogenase; 98.0 7.3E-05 1.6E-09 70.8 11.0 121 1-134 4-136 (326)
168 PF00670 AdoHcyase_NAD: S-aden 97.9 0.00014 3.1E-09 61.2 11.4 91 2-132 24-115 (162)
169 TIGR00507 aroE shikimate 5-deh 97.9 4.9E-05 1.1E-09 70.3 9.5 103 2-133 118-220 (270)
170 cd05213 NAD_bind_Glutamyl_tRNA 97.9 8.6E-05 1.9E-09 70.1 11.3 71 2-89 179-249 (311)
171 COG1712 Predicted dinucleotide 97.9 0.0001 2.2E-09 64.6 10.6 67 2-86 1-68 (255)
172 cd01337 MDH_glyoxysomal_mitoch 97.9 6.9E-05 1.5E-09 70.4 10.1 114 2-133 1-122 (310)
173 TIGR01759 MalateDH-SF1 malate 97.9 8.9E-05 1.9E-09 70.2 10.9 118 2-134 4-135 (323)
174 PRK04148 hypothetical protein; 97.9 0.0001 2.2E-09 60.2 9.7 91 2-124 18-108 (134)
175 PRK14179 bifunctional 5,10-met 97.9 3.8E-05 8.3E-10 70.8 7.7 72 2-128 159-231 (284)
176 TIGR00936 ahcY adenosylhomocys 97.9 0.00035 7.6E-09 67.9 14.4 89 2-130 196-285 (406)
177 PTZ00075 Adenosylhomocysteinas 97.9 7.8E-05 1.7E-09 73.3 9.5 88 2-129 255-343 (476)
178 PRK08618 ornithine cyclodeamin 97.8 0.00014 3E-09 69.1 11.0 76 2-89 128-203 (325)
179 PF01488 Shikimate_DH: Shikima 97.8 5.6E-05 1.2E-09 62.3 7.2 71 2-89 13-86 (135)
180 PRK05476 S-adenosyl-L-homocyst 97.8 0.00015 3.3E-09 70.8 11.2 89 2-130 213-302 (425)
181 PRK05086 malate dehydrogenase; 97.8 0.00017 3.7E-09 68.0 11.2 115 2-135 1-125 (312)
182 TIGR00518 alaDH alanine dehydr 97.8 0.00012 2.7E-09 70.7 10.2 105 3-134 169-274 (370)
183 PTZ00325 malate dehydrogenase; 97.8 0.00019 4.2E-09 67.7 11.1 117 1-135 8-132 (321)
184 cd00401 AdoHcyase S-adenosyl-L 97.8 0.00019 4.2E-09 69.8 11.2 87 2-128 203-290 (413)
185 TIGR01757 Malate-DH_plant mala 97.8 0.00033 7.2E-09 67.6 12.5 120 2-134 45-176 (387)
186 PRK07340 ornithine cyclodeamin 97.8 0.00014 3.1E-09 68.3 9.4 99 2-134 126-224 (304)
187 PRK06407 ornithine cyclodeamin 97.8 0.00027 5.8E-09 66.4 11.1 75 2-88 118-192 (301)
188 TIGR01035 hemA glutamyl-tRNA r 97.8 0.0002 4.4E-09 70.4 10.7 70 2-89 181-251 (417)
189 PRK13301 putative L-aspartate 97.8 0.00036 7.8E-09 63.4 11.5 66 2-87 3-71 (267)
190 PRK04207 glyceraldehyde-3-phos 97.7 0.00024 5.3E-09 67.8 10.9 86 1-88 1-88 (341)
191 PF01118 Semialdhyde_dh: Semia 97.7 4.9E-05 1.1E-09 61.4 5.0 95 3-128 1-98 (121)
192 PLN02494 adenosylhomocysteinas 97.7 0.0002 4.2E-09 70.4 9.9 87 2-128 255-342 (477)
193 PLN00112 malate dehydrogenase 97.7 0.00048 1E-08 67.6 12.4 120 2-134 101-232 (444)
194 cd01336 MDH_cytoplasmic_cytoso 97.7 0.00018 4E-09 68.2 9.3 122 2-132 3-132 (325)
195 cd00704 MDH Malate dehydrogena 97.7 0.00025 5.4E-09 67.2 10.0 119 2-133 1-131 (323)
196 smart00859 Semialdhyde_dh Semi 97.7 0.00017 3.6E-09 58.3 7.7 98 3-129 1-101 (122)
197 PF10100 DUF2338: Uncharacteri 97.7 0.0086 1.9E-07 57.2 20.0 230 1-254 1-283 (429)
198 cd05296 GH4_P_beta_glucosidase 97.7 0.0005 1.1E-08 67.4 12.1 80 2-89 1-86 (419)
199 PRK06823 ornithine cyclodeamin 97.7 0.00054 1.2E-08 64.7 11.8 100 2-133 129-228 (315)
200 COG2423 Predicted ornithine cy 97.7 0.00037 8.1E-09 65.8 10.6 123 2-159 131-253 (330)
201 PRK06046 alanine dehydrogenase 97.7 0.00035 7.6E-09 66.4 10.6 100 2-133 130-229 (326)
202 PRK11579 putative oxidoreducta 97.7 0.00095 2.1E-08 64.0 13.7 67 2-89 5-75 (346)
203 PRK02318 mannitol-1-phosphate 97.7 0.00041 8.9E-09 67.4 11.2 45 2-48 1-46 (381)
204 PRK05225 ketol-acid reductoiso 97.6 8.2E-05 1.8E-09 72.2 6.0 90 2-128 37-132 (487)
205 PRK08291 ectoine utilization p 97.6 0.00033 7.1E-09 66.7 10.1 76 2-89 133-208 (330)
206 TIGR01772 MDH_euk_gproteo mala 97.6 0.00047 1E-08 64.9 10.9 115 3-133 1-121 (312)
207 TIGR01921 DAP-DH diaminopimela 97.6 0.00036 7.8E-09 65.6 10.0 66 2-89 4-71 (324)
208 PLN02819 lysine-ketoglutarate 97.6 0.00052 1.1E-08 73.8 12.4 75 1-90 569-660 (1042)
209 KOG0069 Glyoxylate/hydroxypyru 97.6 0.0014 3E-08 61.7 13.7 107 2-144 163-270 (336)
210 PF13460 NAD_binding_10: NADH( 97.6 0.00014 3E-09 62.7 6.7 98 4-128 1-99 (183)
211 COG2910 Putative NADH-flavin r 97.6 0.00043 9.4E-09 59.0 9.0 72 2-89 1-73 (211)
212 TIGR02354 thiF_fam2 thiamine b 97.6 0.00025 5.5E-09 62.5 8.1 32 2-35 22-54 (200)
213 PRK00045 hemA glutamyl-tRNA re 97.6 0.00054 1.2E-08 67.5 11.2 71 2-90 183-254 (423)
214 PRK07589 ornithine cyclodeamin 97.6 0.0004 8.7E-09 66.3 9.5 102 2-133 130-231 (346)
215 PLN00106 malate dehydrogenase 97.6 0.00043 9.2E-09 65.5 9.6 113 2-132 19-139 (323)
216 PRK09496 trkA potassium transp 97.6 0.00024 5.2E-09 70.5 8.2 73 2-88 1-75 (453)
217 PF02423 OCD_Mu_crystall: Orni 97.6 0.00042 9.1E-09 65.5 9.4 102 2-133 129-230 (313)
218 COG0673 MviM Predicted dehydro 97.5 0.00085 1.8E-08 63.9 11.6 72 1-90 3-79 (342)
219 PRK00436 argC N-acetyl-gamma-g 97.5 0.00042 9E-09 66.4 8.9 98 1-128 2-100 (343)
220 PF02056 Glyco_hydro_4: Family 97.5 0.00053 1.2E-08 59.2 8.2 77 3-87 1-82 (183)
221 TIGR01758 MDH_euk_cyt malate d 97.4 0.00067 1.4E-08 64.3 9.1 119 3-134 1-131 (324)
222 KOG1495 Lactate dehydrogenase 97.4 0.001 2.2E-08 60.0 9.5 109 2-127 21-137 (332)
223 TIGR01850 argC N-acetyl-gamma- 97.4 0.00068 1.5E-08 65.0 9.1 97 2-128 1-100 (346)
224 PLN00203 glutamyl-tRNA reducta 97.4 0.00092 2E-08 67.2 10.3 73 2-89 267-340 (519)
225 TIGR02992 ectoine_eutC ectoine 97.4 0.001 2.2E-08 63.3 10.0 75 2-89 130-205 (326)
226 PRK11861 bifunctional prephena 97.4 0.0043 9.2E-08 64.9 15.3 131 82-233 1-136 (673)
227 TIGR00561 pntA NAD(P) transhyd 97.4 0.0014 3.1E-08 65.3 10.9 116 2-132 165-289 (511)
228 TIGR01771 L-LDH-NAD L-lactate 97.4 0.0013 2.9E-08 61.6 10.0 113 6-133 1-118 (299)
229 PLN02968 Probable N-acetyl-gam 97.4 0.00072 1.6E-08 65.5 8.3 95 1-128 38-135 (381)
230 PRK10206 putative oxidoreducta 97.3 0.0024 5.2E-08 61.2 11.5 71 1-89 1-75 (344)
231 PRK00258 aroE shikimate 5-dehy 97.3 0.0015 3.3E-08 60.6 9.5 73 2-90 124-197 (278)
232 PRK09310 aroDE bifunctional 3- 97.3 0.0017 3.6E-08 65.0 10.3 68 2-88 333-400 (477)
233 PRK13940 glutamyl-tRNA reducta 97.3 0.00072 1.6E-08 66.2 7.4 72 2-90 182-254 (414)
234 KOG1683 Hydroxyacyl-CoA dehydr 97.3 0.00027 5.9E-09 66.3 4.0 107 12-134 1-113 (380)
235 PRK12549 shikimate 5-dehydroge 97.2 0.0014 3E-08 61.1 8.7 75 2-89 128-203 (284)
236 TIGR01761 thiaz-red thiazoliny 97.2 0.003 6.6E-08 60.2 10.9 69 2-89 4-73 (343)
237 PF02254 TrkA_N: TrkA-N domain 97.2 0.0028 6E-08 50.4 9.1 69 4-87 1-71 (116)
238 PRK03659 glutathione-regulated 97.2 0.0015 3.3E-08 67.3 9.3 72 2-88 401-474 (601)
239 TIGR03215 ac_ald_DH_ac acetald 97.2 0.0028 6.1E-08 58.8 10.2 69 2-89 2-75 (285)
240 PLN03075 nicotianamine synthas 97.2 0.0035 7.6E-08 58.3 10.6 133 2-157 125-262 (296)
241 COG0059 IlvC Ketol-acid reduct 97.2 0.0019 4.1E-08 59.3 8.6 91 2-129 19-111 (338)
242 COG0373 HemA Glutamyl-tRNA red 97.2 0.0033 7.2E-08 60.9 10.6 70 2-89 179-249 (414)
243 KOG1502 Flavonol reductase/cin 97.1 0.0026 5.6E-08 59.6 9.3 78 2-92 7-91 (327)
244 COG0002 ArgC Acetylglutamate s 97.1 0.0018 3.8E-08 60.8 7.9 98 1-128 2-102 (349)
245 PRK09424 pntA NAD(P) transhydr 97.1 0.0061 1.3E-07 61.1 12.2 110 2-128 166-286 (509)
246 cd05298 GH4_GlvA_pagL_like Gly 97.1 0.0025 5.5E-08 62.8 9.3 79 2-88 1-84 (437)
247 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.026 5.7E-07 50.3 14.9 33 2-36 24-57 (217)
248 PRK06199 ornithine cyclodeamin 97.1 0.0028 6E-08 61.4 9.3 75 2-88 156-233 (379)
249 COG0686 Ald Alanine dehydrogen 97.1 0.0037 8E-08 57.7 9.2 103 3-135 170-276 (371)
250 PRK08300 acetaldehyde dehydrog 97.1 0.0048 1E-07 57.6 10.3 68 2-88 5-80 (302)
251 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0017 3.6E-08 55.5 6.7 53 2-89 45-98 (168)
252 CHL00194 ycf39 Ycf39; Provisio 97.1 0.0011 2.4E-08 62.6 6.2 73 2-88 1-74 (317)
253 cd01078 NAD_bind_H4MPT_DH NADP 97.0 0.0037 8E-08 54.7 8.9 74 2-89 29-108 (194)
254 cd05197 GH4_glycoside_hydrolas 97.0 0.0033 7.1E-08 61.8 9.3 79 2-88 1-84 (425)
255 PF03435 Saccharop_dh: Sacchar 97.0 0.0005 1.1E-08 66.9 3.6 119 4-138 1-133 (386)
256 PRK06718 precorrin-2 dehydroge 97.0 0.018 3.8E-07 50.9 13.0 67 2-88 11-80 (202)
257 PRK10669 putative cation:proto 97.0 0.0034 7.3E-08 64.2 9.7 70 3-88 419-491 (558)
258 PRK14189 bifunctional 5,10-met 97.0 0.003 6.5E-08 58.4 8.1 70 2-126 159-229 (285)
259 KOG0068 D-3-phosphoglycerate d 97.0 0.019 4.2E-07 53.5 13.2 105 2-143 147-252 (406)
260 PRK14106 murD UDP-N-acetylmura 96.9 0.02 4.3E-07 56.8 13.9 33 2-36 6-38 (450)
261 cd01487 E1_ThiF_like E1_ThiF_l 96.9 0.002 4.3E-08 55.5 5.8 41 3-45 1-42 (174)
262 PF03059 NAS: Nicotianamine sy 96.9 0.012 2.6E-07 54.2 11.2 132 2-157 122-259 (276)
263 PRK03562 glutathione-regulated 96.9 0.0046 1E-07 63.9 9.4 72 2-88 401-474 (621)
264 PF01262 AlaDh_PNT_C: Alanine 96.9 0.003 6.6E-08 54.0 6.6 113 2-128 21-140 (168)
265 PRK14175 bifunctional 5,10-met 96.9 0.0051 1.1E-07 56.9 8.4 53 2-89 159-212 (286)
266 COG1486 CelF Alpha-galactosida 96.8 0.0049 1.1E-07 59.9 8.5 78 2-87 4-86 (442)
267 PRK00961 H(2)-dependent methyl 96.8 0.037 8.1E-07 50.2 13.4 200 65-305 128-339 (342)
268 KOG3124 Pyrroline-5-carboxylat 96.8 0.028 6E-07 50.6 12.5 198 2-251 1-202 (267)
269 PRK14874 aspartate-semialdehyd 96.8 0.0038 8.3E-08 59.5 7.7 69 1-88 1-73 (334)
270 PRK09496 trkA potassium transp 96.8 0.014 3.1E-07 57.9 12.0 41 2-44 232-272 (453)
271 PRK11908 NAD-dependent epimera 96.7 0.0071 1.5E-07 57.8 8.6 41 1-42 1-42 (347)
272 PRK12475 thiamine/molybdopteri 96.7 0.0058 1.3E-07 58.3 7.7 41 2-44 25-66 (338)
273 cd01076 NAD_bind_1_Glu_DH NAD( 96.7 0.024 5.3E-07 50.9 11.1 41 2-44 32-83 (227)
274 PF02882 THF_DHG_CYH_C: Tetrah 96.7 0.013 2.8E-07 49.6 8.8 72 2-128 37-109 (160)
275 PRK00683 murD UDP-N-acetylmura 96.6 0.0045 9.8E-08 60.9 6.9 35 2-38 4-38 (418)
276 PRK06270 homoserine dehydrogen 96.6 0.022 4.8E-07 54.5 11.4 22 2-23 3-24 (341)
277 PRK03369 murD UDP-N-acetylmura 96.6 0.04 8.6E-07 55.4 13.7 70 2-90 13-82 (488)
278 TIGR01723 hmd_TIGR 5,10-methen 96.6 0.083 1.8E-06 48.1 13.9 200 65-305 126-337 (340)
279 PRK06719 precorrin-2 dehydroge 96.5 0.018 4E-07 48.6 9.0 38 2-43 14-51 (157)
280 cd05191 NAD_bind_amino_acid_DH 96.5 0.015 3.4E-07 43.7 7.7 32 2-34 24-55 (86)
281 PRK01710 murD UDP-N-acetylmura 96.5 0.038 8.3E-07 55.1 12.4 33 2-36 15-47 (458)
282 PRK10792 bifunctional 5,10-met 96.5 0.013 2.9E-07 54.1 8.2 70 2-126 160-230 (285)
283 COG1063 Tdh Threonine dehydrog 96.5 0.04 8.6E-07 52.9 12.0 97 3-129 171-271 (350)
284 PRK06349 homoserine dehydrogen 96.4 0.012 2.7E-07 58.0 8.6 68 2-88 4-82 (426)
285 PRK08664 aspartate-semialdehyd 96.4 0.017 3.7E-07 55.4 9.2 80 2-88 4-86 (349)
286 PRK14191 bifunctional 5,10-met 96.4 0.017 3.6E-07 53.5 8.4 70 2-126 158-228 (285)
287 COG0771 MurD UDP-N-acetylmuram 96.4 0.021 4.6E-07 56.2 9.5 117 1-145 7-136 (448)
288 TIGR01546 GAPDH-II_archae glyc 96.3 0.019 4.2E-07 54.4 8.7 85 4-90 1-87 (333)
289 PRK05472 redox-sensing transcr 96.3 0.005 1.1E-07 54.8 4.4 69 2-88 85-156 (213)
290 PRK01438 murD UDP-N-acetylmura 96.3 0.074 1.6E-06 53.3 13.3 33 2-36 17-49 (480)
291 TIGR01470 cysG_Nterm siroheme 96.3 0.038 8.1E-07 48.9 9.8 65 2-87 10-78 (205)
292 COG1064 AdhP Zn-dependent alco 96.3 0.039 8.5E-07 52.2 10.4 41 2-44 168-208 (339)
293 PRK12409 D-amino acid dehydrog 96.2 0.006 1.3E-07 59.7 5.1 34 1-36 1-34 (410)
294 PRK01581 speE spermidine synth 96.2 0.27 5.9E-06 47.1 15.9 141 2-158 152-302 (374)
295 PRK00421 murC UDP-N-acetylmura 96.2 0.031 6.7E-07 55.8 10.2 110 2-144 8-132 (461)
296 PLN00141 Tic62-NAD(P)-related 96.2 0.031 6.7E-07 50.8 9.4 40 1-42 17-57 (251)
297 PRK08644 thiamine biosynthesis 96.2 0.0076 1.6E-07 53.6 5.2 41 2-44 29-70 (212)
298 PRK14192 bifunctional 5,10-met 96.2 0.026 5.7E-07 52.4 8.9 53 2-89 160-213 (283)
299 cd05212 NAD_bind_m-THF_DH_Cycl 96.2 0.036 7.9E-07 45.8 8.7 69 2-125 29-98 (140)
300 PRK05671 aspartate-semialdehyd 96.2 0.021 4.5E-07 54.4 8.3 69 1-87 4-75 (336)
301 PRK00711 D-amino acid dehydrog 96.2 0.0064 1.4E-07 59.5 5.0 34 2-37 1-34 (416)
302 TIGR01809 Shik-DH-AROM shikima 96.2 0.015 3.3E-07 54.0 7.2 72 2-89 126-201 (282)
303 cd01079 NAD_bind_m-THF_DH NAD 96.2 0.034 7.3E-07 48.3 8.6 87 2-127 63-156 (197)
304 PF00070 Pyr_redox: Pyridine n 96.1 0.01 2.2E-07 43.9 4.7 33 3-37 1-33 (80)
305 TIGR00978 asd_EA aspartate-sem 96.1 0.026 5.6E-07 54.0 8.6 33 2-35 1-35 (341)
306 PRK03803 murD UDP-N-acetylmura 96.1 0.12 2.7E-06 51.2 13.7 32 3-36 8-39 (448)
307 PRK00141 murD UDP-N-acetylmura 96.1 0.069 1.5E-06 53.5 11.9 38 2-41 16-53 (473)
308 COG4408 Uncharacterized protei 96.1 0.91 2E-05 42.5 17.7 228 1-254 4-285 (431)
309 PRK14176 bifunctional 5,10-met 96.1 0.034 7.4E-07 51.5 8.7 70 2-126 165-235 (287)
310 TIGR02356 adenyl_thiF thiazole 96.0 0.014 3E-07 51.5 5.9 40 2-43 22-62 (202)
311 PF13241 NAD_binding_7: Putati 96.0 0.027 5.8E-07 44.0 6.9 62 2-87 8-69 (103)
312 PRK01390 murD UDP-N-acetylmura 96.0 0.091 2E-06 52.4 12.3 39 2-42 10-48 (460)
313 PRK14982 acyl-ACP reductase; P 96.0 0.04 8.8E-07 52.4 9.2 69 2-89 156-226 (340)
314 PRK02705 murD UDP-N-acetylmura 96.0 0.089 1.9E-06 52.4 12.1 32 3-36 2-33 (459)
315 TIGR03649 ergot_EASG ergot alk 96.0 0.025 5.3E-07 52.4 7.7 35 3-39 1-36 (285)
316 PRK11863 N-acetyl-gamma-glutam 96.0 0.039 8.5E-07 51.9 8.9 31 1-32 2-33 (313)
317 TIGR01851 argC_other N-acetyl- 96.0 0.032 7E-07 52.2 8.2 57 2-88 2-59 (310)
318 PRK08040 putative semialdehyde 96.0 0.022 4.8E-07 54.2 7.2 90 2-128 5-98 (336)
319 PF05368 NmrA: NmrA-like famil 95.9 0.038 8.2E-07 49.5 8.4 72 4-89 1-75 (233)
320 PRK14183 bifunctional 5,10-met 95.9 0.034 7.3E-07 51.3 7.8 70 2-126 158-228 (281)
321 PLN02427 UDP-apiose/xylose syn 95.8 0.012 2.7E-07 57.1 5.1 41 2-43 15-56 (386)
322 PRK04663 murD UDP-N-acetylmura 95.8 0.21 4.6E-06 49.5 13.9 114 1-144 7-133 (438)
323 PRK06392 homoserine dehydrogen 95.8 0.058 1.3E-06 51.2 9.4 34 2-35 1-41 (326)
324 PRK14190 bifunctional 5,10-met 95.8 0.052 1.1E-06 50.2 8.7 70 2-126 159-229 (284)
325 PLN02383 aspartate semialdehyd 95.8 0.03 6.6E-07 53.5 7.5 24 2-27 8-32 (344)
326 PRK02006 murD UDP-N-acetylmura 95.8 0.12 2.5E-06 52.2 12.0 33 2-36 8-40 (498)
327 PRK05868 hypothetical protein; 95.8 0.0099 2.1E-07 57.6 4.1 35 1-37 1-35 (372)
328 PRK04308 murD UDP-N-acetylmura 95.8 0.14 3.1E-06 50.8 12.4 34 2-37 6-39 (445)
329 PRK07688 thiamine/molybdopteri 95.7 0.02 4.3E-07 54.7 5.9 42 2-45 25-67 (339)
330 PRK02472 murD UDP-N-acetylmura 95.7 0.2 4.3E-06 49.7 13.3 33 2-36 6-38 (447)
331 PF13380 CoA_binding_2: CoA bi 95.7 0.066 1.4E-06 42.7 8.1 97 2-144 1-101 (116)
332 PF02629 CoA_binding: CoA bind 95.7 0.022 4.7E-07 43.9 5.1 66 2-88 4-72 (96)
333 PLN02662 cinnamyl-alcohol dehy 95.7 0.055 1.2E-06 50.8 8.9 35 2-38 5-40 (322)
334 PLN02214 cinnamoyl-CoA reducta 95.7 0.044 9.5E-07 52.4 8.3 36 1-38 10-46 (342)
335 PRK06728 aspartate-semialdehyd 95.7 0.036 7.9E-07 52.9 7.5 68 2-88 6-78 (347)
336 TIGR01087 murD UDP-N-acetylmur 95.7 0.17 3.8E-06 49.9 12.8 32 3-36 1-32 (433)
337 PRK06598 aspartate-semialdehyd 95.7 0.065 1.4E-06 51.5 9.2 33 1-34 1-37 (369)
338 PRK09414 glutamate dehydrogena 95.7 0.18 4E-06 49.7 12.5 41 2-44 233-284 (445)
339 TIGR03466 HpnA hopanoid-associ 95.7 0.01 2.2E-07 55.8 3.7 72 2-87 1-73 (328)
340 PRK06753 hypothetical protein; 95.6 0.013 2.7E-07 56.6 4.3 34 2-37 1-34 (373)
341 TIGR01082 murC UDP-N-acetylmur 95.6 0.13 2.8E-06 51.2 11.5 109 3-144 1-124 (448)
342 PRK12809 putative oxidoreducta 95.6 0.03 6.5E-07 58.2 7.3 34 2-37 311-344 (639)
343 COG0289 DapB Dihydrodipicolina 95.6 0.098 2.1E-06 47.5 9.5 74 1-86 2-77 (266)
344 PTZ00245 ubiquitin activating 95.6 0.13 2.8E-06 46.6 10.2 115 2-135 27-149 (287)
345 PRK14173 bifunctional 5,10-met 95.6 0.063 1.4E-06 49.7 8.5 69 2-125 156-225 (287)
346 cd05311 NAD_bind_2_malic_enz N 95.5 0.11 2.4E-06 46.7 9.6 74 2-87 26-106 (226)
347 cd00755 YgdL_like Family of ac 95.5 0.086 1.9E-06 47.5 8.9 42 2-45 12-54 (231)
348 COG0451 WcaG Nucleoside-diphos 95.5 0.036 7.7E-07 51.7 6.7 37 2-40 1-38 (314)
349 PRK14170 bifunctional 5,10-met 95.5 0.073 1.6E-06 49.2 8.4 69 2-125 158-227 (284)
350 TIGR01296 asd_B aspartate-semi 95.5 0.03 6.5E-07 53.5 6.1 66 3-88 1-71 (339)
351 cd00757 ThiF_MoeB_HesA_family 95.5 0.02 4.4E-07 51.4 4.7 41 2-44 22-63 (228)
352 PRK14169 bifunctional 5,10-met 95.5 0.079 1.7E-06 49.0 8.5 69 2-125 157-226 (282)
353 PRK14186 bifunctional 5,10-met 95.4 0.078 1.7E-06 49.4 8.5 69 2-125 159-228 (297)
354 COG2344 AT-rich DNA-binding pr 95.4 0.04 8.6E-07 47.3 5.8 68 2-88 85-156 (211)
355 PLN03209 translocon at the inn 95.4 0.086 1.9E-06 53.5 9.3 39 3-43 82-121 (576)
356 PRK10538 malonic semialdehyde 95.4 0.22 4.8E-06 44.9 11.3 40 2-43 1-41 (248)
357 PRK00536 speE spermidine synth 95.4 0.44 9.5E-06 43.7 13.1 101 2-131 74-175 (262)
358 PRK14177 bifunctional 5,10-met 95.3 0.092 2E-06 48.6 8.5 71 2-127 160-231 (284)
359 PRK03806 murD UDP-N-acetylmura 95.3 0.33 7.1E-06 48.0 13.2 32 3-36 8-39 (438)
360 PRK12320 hypothetical protein; 95.3 0.094 2E-06 54.7 9.5 34 2-37 1-35 (699)
361 PLN02516 methylenetetrahydrofo 95.3 0.091 2E-06 48.9 8.5 70 2-126 168-238 (299)
362 PRK08328 hypothetical protein; 95.3 0.057 1.2E-06 48.7 7.0 42 2-45 28-70 (231)
363 COG4091 Predicted homoserine d 95.3 0.41 8.8E-06 45.2 12.5 88 2-90 18-113 (438)
364 PRK00377 cbiT cobalt-precorrin 95.2 1.4 3E-05 38.5 15.5 113 3-144 43-161 (198)
365 PRK14180 bifunctional 5,10-met 95.2 0.11 2.3E-06 48.2 8.5 69 2-125 159-228 (282)
366 PRK14166 bifunctional 5,10-met 95.2 0.1 2.2E-06 48.3 8.4 69 2-125 158-227 (282)
367 KOG2741 Dimeric dihydrodiol de 95.2 0.26 5.6E-06 46.4 11.1 72 2-90 7-84 (351)
368 PF01494 FAD_binding_3: FAD bi 95.2 0.021 4.5E-07 54.0 4.0 34 2-37 2-35 (356)
369 PRK07588 hypothetical protein; 95.1 0.022 4.8E-07 55.3 4.2 34 2-37 1-34 (391)
370 PRK14178 bifunctional 5,10-met 95.1 0.077 1.7E-06 49.0 7.4 53 2-89 153-206 (279)
371 PRK14573 bifunctional D-alanyl 95.1 0.25 5.5E-06 52.9 12.4 111 3-144 6-129 (809)
372 PLN02657 3,8-divinyl protochlo 95.1 0.064 1.4E-06 52.3 7.3 36 2-39 61-97 (390)
373 PRK14172 bifunctional 5,10-met 95.1 0.12 2.6E-06 47.7 8.5 69 2-125 159-228 (278)
374 PTZ00188 adrenodoxin reductase 95.1 0.055 1.2E-06 53.9 6.7 85 2-89 40-137 (506)
375 PRK11728 hydroxyglutarate oxid 95.1 0.031 6.7E-07 54.5 5.0 35 2-36 3-37 (393)
376 PRK07538 hypothetical protein; 95.1 0.024 5.1E-07 55.6 4.2 34 2-37 1-34 (413)
377 PRK14193 bifunctional 5,10-met 95.1 0.11 2.4E-06 48.0 8.3 69 2-125 159-230 (284)
378 PRK12771 putative glutamate sy 95.1 0.055 1.2E-06 55.4 7.0 32 2-35 138-169 (564)
379 PRK14187 bifunctional 5,10-met 95.0 0.12 2.5E-06 48.1 8.3 69 2-125 161-230 (294)
380 PLN02896 cinnamyl-alcohol dehy 95.0 0.13 2.9E-06 49.2 9.1 39 2-42 11-50 (353)
381 PF01266 DAO: FAD dependent ox 95.0 0.036 7.8E-07 52.4 5.2 31 3-35 1-31 (358)
382 TIGR01318 gltD_gamma_fam gluta 95.0 0.081 1.8E-06 52.9 7.8 33 2-36 142-174 (467)
383 COG0665 DadA Glycine/D-amino a 95.0 0.032 6.9E-07 53.9 4.7 33 2-36 5-37 (387)
384 PRK14171 bifunctional 5,10-met 95.0 0.13 2.9E-06 47.6 8.4 69 2-125 160-229 (288)
385 cd01486 Apg7 Apg7 is an E1-lik 94.9 0.042 9.2E-07 51.1 5.2 41 3-45 1-42 (307)
386 PRK08223 hypothetical protein; 94.9 0.064 1.4E-06 49.8 6.3 44 2-46 28-71 (287)
387 KOG1494 NAD-dependent malate d 94.9 0.13 2.9E-06 46.9 8.1 130 2-145 29-163 (345)
388 COG0493 GltD NADPH-dependent g 94.9 0.029 6.3E-07 55.7 4.4 87 2-90 124-220 (457)
389 PRK12769 putative oxidoreducta 94.9 0.066 1.4E-06 55.9 7.2 33 2-36 328-360 (654)
390 TIGR03219 salicylate_mono sali 94.9 0.028 6E-07 55.1 4.2 34 2-37 1-35 (414)
391 PRK08163 salicylate hydroxylas 94.9 0.029 6.3E-07 54.5 4.3 34 2-37 5-38 (396)
392 PRK07236 hypothetical protein; 94.9 0.031 6.8E-07 54.2 4.4 34 2-37 7-40 (386)
393 COG0654 UbiH 2-polyprenyl-6-me 94.9 0.031 6.7E-07 54.4 4.4 33 1-35 2-34 (387)
394 PF13450 NAD_binding_8: NAD(P) 94.9 0.049 1.1E-06 39.0 4.4 29 6-36 1-29 (68)
395 PRK14182 bifunctional 5,10-met 94.9 0.15 3.3E-06 47.1 8.6 69 2-125 158-227 (282)
396 PRK06153 hypothetical protein; 94.9 0.024 5.1E-07 54.5 3.4 41 2-44 177-218 (393)
397 PRK06617 2-octaprenyl-6-methox 94.9 0.031 6.8E-07 54.0 4.4 33 1-35 1-33 (374)
398 PRK05690 molybdopterin biosynt 94.9 0.037 8E-07 50.4 4.5 41 2-44 33-74 (245)
399 PF03447 NAD_binding_3: Homose 94.9 0.13 2.9E-06 40.8 7.3 87 8-129 1-92 (117)
400 PRK12779 putative bifunctional 94.8 0.042 9.2E-07 59.5 5.7 33 2-36 307-339 (944)
401 PLN02583 cinnamoyl-CoA reducta 94.8 0.13 2.8E-06 48.0 8.4 33 2-36 7-40 (297)
402 PRK12749 quinate/shikimate deh 94.8 0.16 3.5E-06 47.4 8.8 41 2-44 125-169 (288)
403 PF00899 ThiF: ThiF family; I 94.8 0.051 1.1E-06 44.5 4.9 34 2-37 3-37 (135)
404 PRK12548 shikimate 5-dehydroge 94.8 0.15 3.4E-06 47.5 8.6 39 3-43 128-170 (289)
405 cd01492 Aos1_SUMO Ubiquitin ac 94.7 0.095 2.1E-06 46.0 6.7 41 2-44 22-63 (197)
406 PLN02897 tetrahydrofolate dehy 94.7 0.14 3.1E-06 48.4 8.2 69 2-125 215-284 (345)
407 PRK04690 murD UDP-N-acetylmura 94.7 0.59 1.3E-05 46.8 13.0 33 2-36 9-41 (468)
408 PRK06847 hypothetical protein; 94.7 0.035 7.5E-07 53.5 4.2 34 2-37 5-38 (375)
409 PRK03612 spermidine synthase; 94.7 0.74 1.6E-05 46.7 13.8 112 2-130 299-418 (521)
410 PRK05335 tRNA (uracil-5-)-meth 94.7 0.039 8.4E-07 54.1 4.4 34 1-36 2-35 (436)
411 KOG0022 Alcohol dehydrogenase, 94.7 0.13 2.8E-06 47.9 7.4 41 3-44 195-235 (375)
412 COG0499 SAM1 S-adenosylhomocys 94.6 0.12 2.6E-06 48.9 7.3 63 3-88 211-274 (420)
413 cd01483 E1_enzyme_family Super 94.6 0.041 8.8E-07 45.5 3.9 40 3-44 1-41 (143)
414 TIGR03736 PRTRC_ThiF PRTRC sys 94.6 0.091 2E-06 47.7 6.3 87 2-88 12-116 (244)
415 PRK05562 precorrin-2 dehydroge 94.5 0.33 7.2E-06 43.4 9.7 64 2-87 26-94 (223)
416 PLN02477 glutamate dehydrogena 94.5 0.45 9.9E-06 46.5 11.4 32 2-35 207-239 (410)
417 PLN02616 tetrahydrofolate dehy 94.5 0.17 3.7E-06 48.2 8.0 69 2-125 232-301 (364)
418 TIGR02469 CbiT precorrin-6Y C5 94.4 1 2.2E-05 35.4 11.6 95 2-125 21-120 (124)
419 PRK07231 fabG 3-ketoacyl-(acyl 94.4 0.54 1.2E-05 42.1 11.2 40 2-43 6-46 (251)
420 PF12847 Methyltransf_18: Meth 94.4 0.64 1.4E-05 36.1 10.2 103 3-126 4-110 (112)
421 PRK08374 homoserine dehydrogen 94.3 0.56 1.2E-05 44.8 11.3 21 2-22 3-23 (336)
422 PRK07102 short chain dehydroge 94.3 0.1 2.2E-06 46.9 6.0 40 1-42 1-41 (243)
423 PRK07364 2-octaprenyl-6-methox 94.3 0.043 9.4E-07 53.6 3.9 34 2-37 19-52 (415)
424 KOG0023 Alcohol dehydrogenase, 94.3 0.24 5.3E-06 46.2 8.4 40 2-43 183-223 (360)
425 TIGR03855 NAD_NadX aspartate d 94.3 0.54 1.2E-05 42.3 10.6 87 29-153 5-95 (229)
426 PRK14181 bifunctional 5,10-met 94.3 0.25 5.5E-06 45.8 8.6 71 2-125 154-227 (287)
427 PRK12810 gltD glutamate syntha 94.3 0.1 2.2E-06 52.2 6.5 34 2-37 144-177 (471)
428 PRK08850 2-octaprenyl-6-methox 94.2 0.054 1.2E-06 52.9 4.4 31 3-35 6-36 (405)
429 PRK08017 oxidoreductase; Provi 94.2 0.11 2.4E-06 46.9 6.2 40 3-44 4-44 (256)
430 PRK11259 solA N-methyltryptoph 94.2 0.053 1.2E-06 52.2 4.3 32 3-36 5-36 (376)
431 PLN02520 bifunctional 3-dehydr 94.2 0.29 6.4E-06 49.7 9.8 40 3-44 381-420 (529)
432 PRK08340 glucose-1-dehydrogena 94.2 0.65 1.4E-05 42.1 11.3 40 2-43 1-41 (259)
433 TIGR01777 yfcH conserved hypot 94.2 0.21 4.5E-06 46.0 8.1 67 4-89 1-68 (292)
434 COG0169 AroE Shikimate 5-dehyd 94.2 0.32 6.8E-06 45.2 9.0 41 2-44 127-168 (283)
435 PRK01368 murD UDP-N-acetylmura 94.1 0.9 2E-05 45.3 12.9 33 2-37 7-39 (454)
436 PRK03815 murD UDP-N-acetylmura 94.1 0.28 6.1E-06 48.0 9.2 31 2-35 1-31 (401)
437 PLN02650 dihydroflavonol-4-red 94.1 0.28 6.1E-06 46.8 9.1 39 2-42 6-45 (351)
438 TIGR01377 soxA_mon sarcosine o 94.1 0.061 1.3E-06 51.9 4.5 31 3-35 2-32 (380)
439 PRK07454 short chain dehydroge 94.1 0.89 1.9E-05 40.6 11.9 40 2-43 7-47 (241)
440 PRK05600 thiamine biosynthesis 94.1 0.23 4.9E-06 48.1 8.4 41 2-44 42-83 (370)
441 PLN00198 anthocyanidin reducta 94.1 0.27 5.8E-06 46.7 8.8 35 2-38 10-45 (338)
442 PLN02989 cinnamyl-alcohol dehy 94.1 0.12 2.7E-06 48.6 6.5 36 2-39 6-42 (325)
443 cd08237 ribitol-5-phosphate_DH 94.1 0.62 1.4E-05 44.3 11.3 42 3-44 166-207 (341)
444 PRK14184 bifunctional 5,10-met 94.1 0.26 5.6E-06 45.7 8.2 54 2-90 158-216 (286)
445 PRK12550 shikimate 5-dehydroge 94.0 0.14 2.9E-06 47.4 6.3 40 3-44 124-164 (272)
446 TIGR03329 Phn_aa_oxid putative 94.0 0.071 1.5E-06 53.1 4.8 34 3-36 26-59 (460)
447 PRK05884 short chain dehydroge 94.0 0.12 2.7E-06 45.9 5.9 41 2-44 1-42 (223)
448 COG2227 UbiG 2-polyprenyl-3-me 94.0 0.26 5.7E-06 44.2 7.7 103 2-130 61-163 (243)
449 KOG1370 S-adenosylhomocysteine 94.0 0.4 8.6E-06 44.4 9.0 84 3-126 215-300 (434)
450 PRK07333 2-octaprenyl-6-methox 94.0 0.059 1.3E-06 52.5 4.1 37 1-37 1-37 (403)
451 PRK14027 quinate/shikimate deh 94.0 0.36 7.8E-06 44.9 9.1 41 2-44 128-169 (283)
452 PRK08762 molybdopterin biosynt 93.9 0.22 4.7E-06 48.4 7.9 41 2-44 136-177 (376)
453 COG0190 FolD 5,10-methylene-te 93.9 0.21 4.6E-06 45.9 7.2 69 2-125 157-226 (283)
454 PRK08849 2-octaprenyl-3-methyl 93.9 0.062 1.4E-06 52.1 4.1 32 3-36 5-36 (384)
455 PRK08013 oxidoreductase; Provi 93.9 0.06 1.3E-06 52.6 4.0 33 3-37 5-37 (400)
456 TIGR02717 AcCoA-syn-alpha acet 93.9 0.64 1.4E-05 46.2 11.3 87 2-130 8-100 (447)
457 PRK06182 short chain dehydroge 93.9 0.14 2.9E-06 47.0 6.2 41 2-44 4-45 (273)
458 COG1233 Phytoene dehydrogenase 93.9 0.069 1.5E-06 53.7 4.5 33 2-36 4-36 (487)
459 TIGR03364 HpnW_proposed FAD de 93.9 0.076 1.6E-06 51.0 4.6 32 3-36 2-33 (365)
460 PRK14174 bifunctional 5,10-met 93.9 0.33 7.2E-06 45.2 8.6 53 2-89 160-217 (295)
461 TIGR01202 bchC 2-desacetyl-2-h 93.9 0.42 9.2E-06 44.8 9.6 38 3-42 147-185 (308)
462 PRK05865 hypothetical protein; 93.9 0.16 3.4E-06 54.2 7.2 33 2-36 1-34 (854)
463 PRK08773 2-octaprenyl-3-methyl 93.8 0.065 1.4E-06 52.1 4.1 32 3-36 8-39 (392)
464 PRK01747 mnmC bifunctional tRN 93.8 0.069 1.5E-06 55.8 4.5 33 2-36 261-293 (662)
465 PRK06475 salicylate hydroxylas 93.8 0.062 1.3E-06 52.5 3.9 34 2-37 3-36 (400)
466 TIGR02360 pbenz_hydroxyl 4-hyd 93.8 0.072 1.6E-06 51.9 4.3 34 2-37 3-36 (390)
467 PRK05653 fabG 3-ketoacyl-(acyl 93.8 1.1 2.3E-05 39.9 11.6 39 2-42 6-45 (246)
468 PRK07024 short chain dehydroge 93.7 0.95 2.1E-05 41.0 11.4 40 2-43 3-43 (257)
469 PRK07045 putative monooxygenas 93.7 0.073 1.6E-06 51.7 4.2 34 2-37 6-39 (388)
470 PLN02852 ferredoxin-NADP+ redu 93.7 0.15 3.3E-06 51.1 6.5 88 2-89 27-125 (491)
471 PRK14031 glutamate dehydrogena 93.7 1.2 2.7E-05 43.9 12.5 30 2-33 229-259 (444)
472 PRK09126 hypothetical protein; 93.7 0.077 1.7E-06 51.5 4.2 33 3-37 5-37 (392)
473 COG3349 Uncharacterized conser 93.6 0.077 1.7E-06 52.5 4.1 33 2-36 1-33 (485)
474 PRK00517 prmA ribosomal protei 93.6 0.59 1.3E-05 42.5 9.8 108 2-144 121-229 (250)
475 PRK12939 short chain dehydroge 93.6 1.2 2.7E-05 39.7 11.9 40 2-43 8-48 (250)
476 KOG1399 Flavin-containing mono 93.6 0.063 1.4E-06 53.1 3.5 33 2-36 7-39 (448)
477 PRK13512 coenzyme A disulfide 93.6 0.1 2.2E-06 51.7 5.0 36 1-36 1-36 (438)
478 PRK07494 2-octaprenyl-6-methox 93.6 0.071 1.5E-06 51.7 3.9 32 3-36 9-40 (388)
479 PRK06180 short chain dehydroge 93.6 1 2.2E-05 41.3 11.5 41 2-44 5-46 (277)
480 PRK07877 hypothetical protein; 93.6 0.083 1.8E-06 55.3 4.5 83 2-87 108-205 (722)
481 TIGR01988 Ubi-OHases Ubiquinon 93.5 0.075 1.6E-06 51.2 3.9 33 3-37 1-33 (385)
482 PLN02366 spermidine synthase 93.5 1.9 4E-05 40.7 13.1 110 2-129 93-208 (308)
483 PRK12826 3-ketoacyl-(acyl-carr 93.5 1.1 2.5E-05 39.9 11.5 38 2-41 7-45 (251)
484 PRK12829 short chain dehydroge 93.5 0.83 1.8E-05 41.3 10.6 40 2-43 12-52 (264)
485 PLN02823 spermine synthase 93.5 3.2 7E-05 39.6 14.7 111 2-128 105-221 (336)
486 TIGR03366 HpnZ_proposed putati 93.4 0.87 1.9E-05 42.0 10.7 40 3-44 123-163 (280)
487 PRK07074 short chain dehydroge 93.4 1.1 2.4E-05 40.4 11.3 39 3-43 4-43 (257)
488 TIGR01963 PHB_DH 3-hydroxybuty 93.4 1.4 3E-05 39.5 11.9 40 2-43 2-42 (255)
489 PRK09242 tropinone reductase; 93.4 1.1 2.4E-05 40.4 11.3 40 2-43 10-50 (257)
490 cd08230 glucose_DH Glucose deh 93.4 1.1 2.3E-05 42.9 11.6 40 3-44 175-217 (355)
491 PRK05866 short chain dehydroge 93.4 1.3 2.7E-05 41.3 11.8 40 2-43 41-81 (293)
492 PLN02986 cinnamyl-alcohol dehy 93.3 0.29 6.3E-06 46.1 7.5 79 2-87 6-86 (322)
493 PRK05714 2-octaprenyl-3-methyl 93.3 0.077 1.7E-06 51.8 3.7 32 3-36 4-35 (405)
494 PF00743 FMO-like: Flavin-bind 93.3 0.083 1.8E-06 53.6 4.0 34 2-37 2-35 (531)
495 COG5495 Uncharacterized conser 93.3 3.2 6.9E-05 37.1 13.1 189 2-244 11-205 (289)
496 PLN02172 flavin-containing mon 93.3 0.087 1.9E-06 52.6 4.0 33 2-36 11-43 (461)
497 TIGR00137 gid_trmFO tRNA:m(5)U 93.3 0.095 2.1E-06 51.5 4.1 33 3-37 2-34 (433)
498 PRK04457 spermidine synthase; 93.3 2.9 6.4E-05 38.4 13.8 103 2-125 68-175 (262)
499 PF03720 UDPG_MGDP_dh_C: UDP-g 93.3 0.32 6.9E-06 38.1 6.4 83 12-126 18-100 (106)
500 PRK08243 4-hydroxybenzoate 3-m 93.3 0.1 2.2E-06 50.8 4.3 34 2-37 3-36 (392)
No 1
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-86 Score=615.21 Aligned_cols=342 Identities=42% Similarity=0.681 Sum_probs=322.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||.||+|+..|.+||+. ||+|+++|+|+++++.|++|..|++||++++++++ ...++++||+|++++++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 8999999999999999999999 99999999999999999999999999999999886 55678999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
++|||||||.+++| ..|+++++++++.|.++++..++||++|||||||++.+.+.+.+...+.+|.|+++|||++
T Consensus 79 v~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLR 153 (414)
T COG1004 79 VVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLR 153 (414)
T ss_pred EEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhc
Confidence 99999999999876 9999999999999999999889999999999999999987776654455899999999999
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC-CCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV-PEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (362)
+|+|++|+++|+|||+|..+ +++.+.++++|..+. ...++..++.++||+.||+.|+|+|++|+|+||++.+|++
T Consensus 154 EG~Av~D~~~PdRIViG~~~----~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~ 229 (414)
T COG1004 154 EGSAVYDFLYPDRIVIGVRS----ERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK 229 (414)
T ss_pred CcchhhhccCCCeEEEccCC----hhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 567888999998752 1357888999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 017997 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (362)
Q Consensus 240 ~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (362)
.|+|..+|++.+|.|+|||.+|++||+||||+|||||+.+|++.|++.|++ ..+++++.++|+.||.++++++.+.+.
T Consensus 230 ~g~D~~~V~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~--~~ll~avv~vN~~qk~~~~~~i~~~~~ 307 (414)
T COG1004 230 VGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYD--PNLLEAVVEVNERRKDKLAEKILNHLG 307 (414)
T ss_pred hCCCHHHHHHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998 899999999999999999999988875
Q ss_pred CCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 320 ~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
++|++|+||||+|||||||+|+||++.|++.|++.|+
T Consensus 308 --l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga 344 (414)
T COG1004 308 --LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGA 344 (414)
T ss_pred --CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999985
No 2
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.2e-85 Score=602.26 Aligned_cols=340 Identities=35% Similarity=0.481 Sum_probs=316.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+||||||||+|+|..||++ |++|+|+|+|+.+++.+++|+.++.|+++++++++ ...+++++|+|+++ ++.||
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d 86 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD 86 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence 6899999999999999999999 99999999999999999999999999999987665 56788999999998 88999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHH-HHHhccC---CCceEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEK-ILTHNSK---GIKFQILSNP 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~-~l~~~~~---g~~~~v~~~P 156 (362)
+++||||||.+.+ ++||+++++++.+.|+++|++|++||.+||+|||||+++.. ++++.++ +.||+++|||
T Consensus 87 v~iI~VPTPl~~~-----~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP 161 (436)
T COG0677 87 VFIICVPTPLKKY-----REPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP 161 (436)
T ss_pred EEEEEecCCcCCC-----CCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence 9999999999873 59999999999999999999999999999999999998754 5554332 6799999999
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
||..||+..+++.+.++| +||. ++++.+.+..||+.+.. ..+.++++++||++|+.+|+||++|||++||++.+
T Consensus 162 ERv~PG~~~~el~~~~kV-IgG~----tp~~~e~a~~lY~~iv~-~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali 235 (436)
T COG0677 162 ERVLPGNVLKELVNNPKV-IGGV----TPKCAELAAALYKTIVE-GVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235 (436)
T ss_pred cccCCCchhhhhhcCCce-eecC----CHHHHHHHHHHHHHheE-EEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999998 5877 38899999999999885 46778999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Q 017997 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (362)
|+++|+|.++++++++++|+ .+.++||||+||||+|.||+||+|.|+++|.+ +++++.++++|++||.|+++++.+
T Consensus 236 ~~~~GIdvwevIeaAnt~P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~--~rlI~tAreIN~~mP~~Vv~~~~~ 311 (436)
T COG0677 236 CNAMGIDVWEVIEAANTKPR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLP--ARLIRTAREINDSMPRHVVDRVKE 311 (436)
T ss_pred HHHhCCcHHHHHHHhccCCc--eeecCCCCCCCCcccccCchheeecccccCCc--hHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999999998 48899999999999999999999999999999 999999999999999999999988
Q ss_pred Hh---cCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccCC
Q 017997 317 SM---FNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERGL 359 (362)
Q Consensus 317 ~~---~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~~ 359 (362)
.| ++.+++++|+|||||||+|+||+||||+++|++.|.+.|+.
T Consensus 312 al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~ 357 (436)
T COG0677 312 ALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGE 357 (436)
T ss_pred HHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCe
Confidence 66 56889999999999999999999999999999999999853
No 3
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=100.00 E-value=2.7e-83 Score=627.54 Aligned_cols=358 Identities=92% Similarity=1.366 Sum_probs=330.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+||||+++|..|++++.||+|++||+|++++++|++|+.+++|+++++++.+...+++++|+++.+++++||
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 79999999999999999999998546889999999999999999999999999999987643456999999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
++|||||||.+.+|.+.++.+|++++++++++|.++++++++||.+||+||||++.+.+.+.+.+.|.+|+++|+|||+.
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~ 160 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLA 160 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccC
Confidence 99999999987654333458999999999999999999999999999999999999988777654467899999999999
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
||++++++.+|++||+|+.++++.+++.++++++|+.+.+..++.++++++||++|+++|+||+++|+|+||++.+|+++
T Consensus 161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~ 240 (473)
T PLN02353 161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (473)
T ss_pred CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999899875544467889999999998643577889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 017997 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFN 320 (362)
Q Consensus 241 g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~ 320 (362)
|+|+.+|++++++|||+|++|++||+||||||||||+++|++.++++|+++.++++++++++|+.||+++++++++.+.+
T Consensus 241 giD~~eV~~~~~~d~rig~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~~~vv~~~~~~l~~ 320 (473)
T PLN02353 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMFN 320 (473)
T ss_pred CCCHHHHHHHhCCCCcCCCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999998778899999999999999999999998877
Q ss_pred CCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 321 ~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
.++++||+|||+||||||+|+|+||+++|++.|+++|.
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~ 358 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKA 358 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999875
No 4
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-74 Score=551.32 Aligned_cols=328 Identities=25% Similarity=0.370 Sum_probs=291.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+||||+++|..|+ . ||+|++||+|+++++.++++..+++|+++++++.+. .++++++++..+++++||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~-~~~l~~t~~~~~~~~~ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSD-KIHFNATLDKNEAYRDADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhC-CCcEEEecchhhhhcCCCE
Confidence 79999999999999998887 5 799999999999999999999999999999987652 4567778888787899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+|||||.+.. ...+|++++++++++|.+ ++++++||++||+||||++++.+.+.+ +.++|+|||+.+
T Consensus 77 vii~Vpt~~~~k----~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~------~~v~~~PE~l~~ 145 (388)
T PRK15057 77 VIIATPTDYDPK----TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT------ENIIFSPEFLRE 145 (388)
T ss_pred EEEeCCCCCccC----CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc------CcEEECcccccC
Confidence 999999997542 237899999999999988 689999999999999999998876654 357899999999
Q ss_pred CccccccCCCCeEEEecCCCcchHHHHHHHHHHH-hccCCCC-cEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017997 162 GTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVY-AHWVPED-RILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~-~~~~~~~-~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (362)
|++++++.+|++||+|+. ++..+++.++| ..+.... +++++++++||++||++|+|++++|+|+||++.+|++
T Consensus 146 G~a~~d~~~p~rvv~G~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 146 GKALYDNLHPSRIVIGER-----SERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred CcccccccCCCEEEEEcC-----cHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 34456666666 4443222 3357999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 017997 240 TGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (362)
Q Consensus 240 ~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (362)
+|+|+++|++++++|||+|..|++||+||||||||||+++|.+.+ .+++ ++++++++++|+.||+++++++++.
T Consensus 221 ~GiD~~eV~~a~~~d~ri~~~~l~pG~G~GG~ClpkD~~~L~~~~--~~~~--~~l~~~~~~~N~~~~~~~~~~~~~~-- 294 (388)
T PRK15057 221 LGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANY--QSVP--NNLISAIVDANRTRKDFIADAILSR-- 294 (388)
T ss_pred hCcCHHHHHHHhcCCCCCCCccCCCCCCCCCcChhhhHHHHHHhc--cCCC--cHHHHHHHHHHHHhHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999998776 4555 7899999999999999999999763
Q ss_pred CCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 320 NTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 320 ~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
++++|+|||+||||||+|+|+||+++|++.|+++|.
T Consensus 295 ---~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~ 330 (388)
T PRK15057 295 ---KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGV 330 (388)
T ss_pred ---cCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCC
Confidence 689999999999999999999999999999999985
No 5
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=100.00 E-value=3e-73 Score=552.72 Aligned_cols=336 Identities=24% Similarity=0.290 Sum_probs=303.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|||+|||+||||++||.+|++ ||+|++||+++++++.+++|..|++|++++++... +++.++++.+ ++++||
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~---~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~---g~l~~t~~~~-~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK---SRQVVGFDVNKKRILELKNGVDVNLETTEEELREA---RYLKFTSEIE-KIKECN 78 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc---CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhh---CCeeEEeCHH-HHcCCC
Confidence 3899999999999999999886 69999999999999999999999999999998653 6788998876 589999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH-HHHHHHhcc--C-CCceEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHNS--K-GIKFQILSNP 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~-l~~~l~~~~--~-g~~~~v~~~P 156 (362)
++|+|||||.+.++ .+|++++.++.++|.++++++++||++||++|||+++ +.+.+++.. . +.+|.++|+|
T Consensus 79 vvii~Vptp~~~~~-----~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~P 153 (425)
T PRK15182 79 FYIITVPTPINTYK-----QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSP 153 (425)
T ss_pred EEEEEcCCCCCCCC-----CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCC
Confidence 99999999987654 8999999999999999999999999999999999986 456666532 1 4679999999
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
||+.+|.+.+++.+++++++|+. +++.+.++++|+.+.....++++++++||++|+++|+|++++|+++||++.+
T Consensus 154 E~v~~G~a~~~~~~~~riv~G~~-----~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~l 228 (425)
T PRK15182 154 ERINPGDKKHRLTNIKKITSGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAII 228 (425)
T ss_pred CcCCCCcccccccCCCeEEECCC-----HHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999976643 6788899999999863346778999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Q 017997 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (362)
|+++|+|++++++++++++++ ..+.||+ |||||||||+++|.+.+++.|+. ++++++++++|++||+++++++++
T Consensus 229 ae~~GiD~~~v~~a~~~~~~~--~~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~--~~l~~~a~~iN~~~~~~v~~~~~~ 303 (425)
T PRK15182 229 FNRLNIDTEAVLRAAGSKWNF--LPFRPGL-VGGHCIGVDPYYLTHKSQGIGYY--PEIILAGRRLNDNMGNYVSEQLIK 303 (425)
T ss_pred HHHhCcCHHHHHHHhcCCCCc--ccCCCCc-cccccccccHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999753 3346666 99999999999999999999998 899999999999999999999998
Q ss_pred Hh---cCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 317 SM---FNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 317 ~~---~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
.+ ++++++++|+|||+||||||+|+|+||+++|++.|+++|.
T Consensus 304 ~l~~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~ 348 (425)
T PRK15182 304 AMIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSC 348 (425)
T ss_pred HHHhcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCC
Confidence 87 3568999999999999999999999999999999999875
No 6
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=100.00 E-value=5.4e-72 Score=544.25 Aligned_cols=335 Identities=31% Similarity=0.434 Sum_probs=302.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|+||+++|.+|+++ ||+|++||+++++++.+++|..+++|+++++++.+ ...++++++++. ++|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~----~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTP----EPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeeccc----ccC
Confidence 48999999999999999999999 99999999999999999999999999999998764 345778887753 479
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC----------CCc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK----------GIK 149 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~----------g~~ 149 (362)
|+||+|||||.+.++ .+|++++.+++++|.++++++++||++||++|||++++...+.+.+. +.+
T Consensus 77 Dvvii~vptp~~~~~-----~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 77 DAFLIAVPTPFKGDH-----EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred CEEEEEcCCCCCCCC-----CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 999999999987654 89999999999999999999999999999999999998776655321 357
Q ss_pred eEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHH
Q 017997 150 FQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229 (362)
Q Consensus 150 ~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (362)
|.++++|||+.+|.+.+++.++++++ ||.+ +++.++++++|+.++. ..++++++++||++|+++|+|+++++++
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vv-gG~~----~~~~~~~~~ly~~~~~-~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~ 225 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVI-GGMT----PVCSARASELYKIFLE-GECVVTNSRTAEMCKLTENSFRDVNIAF 225 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEE-EeCC----HHHHHHHHHHHHHhcC-CCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999875 7752 7889999999999974 4667789999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHH
Q 017997 230 VNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSR 309 (362)
Q Consensus 230 ~nE~~~l~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~ 309 (362)
+||++.+|+++|+|+++|++++++|||+ ++++||+||||||||||+++|.+. .+.. ++++++++++|+.||++
T Consensus 226 ~nE~~~lae~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~ClpkD~~~L~~~---~~~~--~~l~~~a~~~N~~~~~~ 298 (415)
T PRK11064 226 ANELSLICADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVAQ---NPQQ--ARLIRTAREVNDGKPHW 298 (415)
T ss_pred HHHHHHHHHHhCCCHHHHHHHhccCCCc--ccCCCCCCCCCccccccHHHHHHh---cCCc--cHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999987 689999999999999999999764 3444 78999999999999999
Q ss_pred HHHHHHHHh-------cCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccCC
Q 017997 310 FVNRVVASM-------FNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERGL 359 (362)
Q Consensus 310 ~~~~~~~~~-------~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~~ 359 (362)
+++++++.+ ++++++++|+|||+||||||+|+||||+++|++.|+++|+.
T Consensus 299 v~~~~~~~l~~~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~ 355 (415)
T PRK11064 299 VIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSG 355 (415)
T ss_pred HHHHHHHHHhhhhhhhccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCc
Confidence 999998876 45689999999999999999999999999999999999744
No 7
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.3e-72 Score=496.54 Aligned_cols=359 Identities=84% Similarity=1.296 Sum_probs=346.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|||-||+||+|+|..+.+|.+.|..+|+++|++..++.++++..+|+||||+++.+.++...++.|++|.+.+++++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 78999999999999999999999899999999999999999999999999999999999988999999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+.|.||....|.|+++.+|+++++++.+.|+......+||+.+||+|+.+.+.+..++.+..+|..|.++++|||+.
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpefla 160 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLA 160 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhc
Confidence 99999999999899999999999999999999999999999999999999999999999997666688999999999999
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
+|.++.|+++|+||+|||.+++...++.+.+..+|+++.+..++.+++.+++|+.||+.|+|++.+|+.+|.|..+||..
T Consensus 161 egtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceat 240 (481)
T KOG2666|consen 161 EGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEAT 240 (481)
T ss_pred ccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 99999999999999999998877788899999999999987788899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 017997 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFN 320 (362)
Q Consensus 241 g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~ 320 (362)
|+|..+|..++|+|.|||++|++.+.||||+|+.||+..|+++++.+++||++++|+++..+|++|+.++++++..+|.+
T Consensus 241 gadv~eva~avg~d~rig~kfl~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyqkrrfa~rii~smFN 320 (481)
T KOG2666|consen 241 GADVSEVAYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQKRRFANRIISSMFN 320 (481)
T ss_pred CCCHHHHHHHhcccccccHHHhhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccCC
Q 017997 321 TVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERGL 359 (362)
Q Consensus 321 ~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~~ 359 (362)
.+.+|+|+|||++||.||.|+||||++.+.+.|+++|+.
T Consensus 321 TVsdKKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~ 359 (481)
T KOG2666|consen 321 TVSDKKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKAR 359 (481)
T ss_pred ccccceEEEEEeEeecCCCCcccCcHHHHHHHHhhccce
Confidence 999999999999999999999999999999999999863
No 8
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=1.2e-70 Score=536.50 Aligned_cols=342 Identities=39% Similarity=0.609 Sum_probs=315.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|+||+++|..|+++ ||+|++||+++++++.++++..|++|+++++++.+. ..++++++++++++++++|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad 78 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence 7999999999999999999999 999999999999999999999999999999987652 2466899999988899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHH-HHHHhcc--C-CCceEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIE-KILTHNS--K-GIKFQILSNP 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~-~~l~~~~--~-g~~~~v~~~P 156 (362)
+||+|||||...++ .+|++++.++++++.++++++++|+++||++|+|++++. +.+++.. . +.+|.++++|
T Consensus 79 vvii~vpt~~~~~~-----~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P 153 (411)
T TIGR03026 79 VIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP 153 (411)
T ss_pred EEEEEeCCCCCCCC-----CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence 99999999987654 899999999999999999999999999999999998885 5555521 1 5678999999
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
|++.+|.+.+++.+|+++++|++ +++.++++++|+.++.+.+++.+++++||++|+++|++++++++++||++.+
T Consensus 154 e~~~~G~~~~~~~~~~~iv~G~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 154 EFLREGNAVHDLLNPDRIVGGET-----EEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CcCCCCChhhhhcCCCEEEEeCC-----HHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988854 7899999999999862246778999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Q 017997 237 CEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVA 316 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~ 316 (362)
|+++|+|+++++++++.+|+++.++++||+||||+|+|||++++++.|++.|++ .+++++++++|++||+++++++++
T Consensus 229 a~~~GiD~~~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~~N~~~~~~~~~~~~~ 306 (411)
T TIGR03026 229 CEALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYN--PELIEAAREINDSQPDYVVEKILD 306 (411)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCC--cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 899999999999999999999998
Q ss_pred HhcCCCCCCEEEEEeeecCCCCCCCCCChhHHHHHHHHhccC
Q 017997 317 SMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDSHHGEASERG 358 (362)
Q Consensus 317 ~~~~~~~~~~v~vlG~~~k~~~~d~r~s~~~~~~~~L~~~~~ 358 (362)
.+ +.+++++|+|||+||||||+|+|+||++.|++.|+++|.
T Consensus 307 ~l-~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~ 347 (411)
T TIGR03026 307 LL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGA 347 (411)
T ss_pred Hh-hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCC
Confidence 88 678999999999999999999999999999999999974
No 9
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=100.00 E-value=4.8e-40 Score=285.67 Aligned_cols=182 Identities=42% Similarity=0.639 Sum_probs=149.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+||+|+++|..||++ ||+|++||+|+++++.|++|..|++||++++++++. ..+++++++|.+++++++|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 8999999999999999999999 999999999999999999999999999999998874 4789999999999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH-HHHHHHHhccC-CCceEEeeCCcc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSK-GIKFQILSNPEF 158 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~-~l~~~l~~~~~-g~~~~v~~~Pe~ 158 (362)
++|+|||||.+.++ .+|++++++++++|+++++++++||++||+||||++ .+.+++++.+. +.+|+++|+|||
T Consensus 79 v~~I~VpTP~~~~~-----~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr 153 (185)
T PF03721_consen 79 VVFICVPTPSDEDG-----SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER 153 (185)
T ss_dssp EEEE----EBETTT-----SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred eEEEecCCCccccC-----CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence 99999999998855 999999999999999999999999999999999998 45788887653 468999999999
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDV 194 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l 194 (362)
+.||++++++.+|++|++|..+ +.+.+++++|
T Consensus 154 l~~G~a~~d~~~~~rvV~G~~~----~~~~~~~~~l 185 (185)
T PF03721_consen 154 LREGRAIEDFRNPPRVVGGCDD----ESAEERLKEL 185 (185)
T ss_dssp --TTSHHHHHHSSSEEEEEESS----HHHHHHHHHH
T ss_pred cCCCCcchhccCCCEEEEeCCc----HHHHHHHhcC
Confidence 9999999999999999887663 4555566654
No 10
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=4.4e-32 Score=247.38 Aligned_cols=252 Identities=20% Similarity=0.233 Sum_probs=211.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||++||+|.||.|||.+|.++ ||+|++|||++++ .+.+.+. .....+++.++++.+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a--G~~v~v~~r~~~ka~~~~~~~-------------------Ga~~a~s~~eaa~~aD 59 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA--GHEVTVYNRTPEKAAELLAAA-------------------GATVAASPAEAAAEAD 59 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC--CCEEEEEeCChhhhhHHHHHc-------------------CCcccCCHHHHHHhCC
Confidence 6999999999999999999999 9999999999999 5555441 2455677788899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|||.+ ..+++++ ..+.+.+++++++|++||+.|.+++++.+.+++.+ +..+.+|.
T Consensus 60 vVitmv~~~--------------~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G----~~~lDAPV 121 (286)
T COG2084 60 VVITMLPDD--------------AAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG----LEFLDAPV 121 (286)
T ss_pred EEEEecCCH--------------HHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CcEEecCc
Confidence 999999854 2456666 67889999999999999999999999998888763 34578998
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
..++..+..+.. .|++|++ ++.+++++++|+.++. ..++.++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 122 sGg~~~A~~GtL---timvGG~-----~~~f~r~~pvl~~~g~-~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la 192 (286)
T COG2084 122 SGGVPGAAAGTL---TIMVGGD-----AEAFERAKPVLEAMGK-NIVHVGPVGAGQAAKLANNILLAGNIAALAEALALA 192 (286)
T ss_pred cCCchhhhhCce---EEEeCCC-----HHHHHHHHHHHHHhcC-ceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777766555 5889987 8899999999999983 566788889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~-------~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
++.|+|++.+.+++....--+| +.+ ++.|||.-..+.||+.+.++.|++.|++ .|+...+.+.-
T Consensus 193 ~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~--lP~~~~~~~ly 265 (286)
T COG2084 193 EKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAP--LPLTALAAELY 265 (286)
T ss_pred HHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHH
Confidence 9999999999999987531111 111 2557799999999999999999999998 67777655543
No 11
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.97 E-value=8.7e-30 Score=238.08 Aligned_cols=249 Identities=19% Similarity=0.237 Sum_probs=197.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (362)
||+|||+|.||.++|..|++. ||+|++||+++++++.+.+. + ...++++.+++++||+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~--G~~V~~~dr~~~~~~~~~~~------------------g-~~~~~~~~~~~~~aDiv 59 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA--GYQLHVTTIGPEVADELLAA------------------G-AVTAETARQVTEQADVI 59 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC------------------C-CcccCCHHHHHhcCCEE
Confidence 699999999999999999999 99999999999999887652 1 22345677788999999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 83 FVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 83 ii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+|+|++. .++.++ +.+.+.++++++|++.||++|.+++++.+.+++. | +.++.+|.+.
T Consensus 60 i~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~--g--~~~~~~pv~g 121 (291)
T TIGR01505 60 FTMVPDSP--------------QVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEK--G--IDYLDAPVSG 121 (291)
T ss_pred EEecCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc--C--CCEEecCCCC
Confidence 99998532 234443 4566778899999999999999988888877764 2 3446789876
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (362)
.+..+..+.. .+++|++ +++.++++++++.++. .+++.++.+.++.+|+++|.+.+.++++++|+..+|++
T Consensus 122 ~~~~a~~g~l---~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~ 192 (291)
T TIGR01505 122 GEIGAIEGTL---SIMVGGD-----QAVFDRVKPLFEALGK-NIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK 192 (291)
T ss_pred CHHHHhcCCE---EEEecCC-----HHHHHHHHHHHHHhcC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655543322 4778875 7889999999999973 45666677899999999999999999999999999999
Q ss_pred hCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHH
Q 017997 240 TGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (362)
Q Consensus 240 ~g~d~~~v~~~~~~~~~i-------~~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (362)
.|+|++++.++++..... ..++. .+.+||...|+.||+.++++.+++.|++ .++++++.+
T Consensus 193 ~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~~~~~~~~~ 261 (291)
T TIGR01505 193 AGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGAN--LPNTATVQE 261 (291)
T ss_pred cCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChhHHHHHH
Confidence 999999999999843210 00111 1236899999999999999999999998 777776654
No 12
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.97 E-value=1e-29 Score=237.85 Aligned_cols=253 Identities=17% Similarity=0.170 Sum_probs=201.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+||+|||+|.||.+||..|+++ ||+|++||+++++++.+.+. ....++++.++++++|
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~--G~~V~v~d~~~~~~~~~~~~-------------------g~~~~~s~~~~~~~aD 59 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ--GHQLQVFDVNPQAVDALVDK-------------------GATPAASPAQAAAGAE 59 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence 67999999999999999999999 99999999999999887652 1334567778889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|+|++. .+++++ +.+.+.++++++++++||++|.+++++.+.+.+.+ +.++.+|.
T Consensus 60 vVi~~vp~~~--------------~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g----~~~ldapV 121 (296)
T PRK15461 60 FVITMLPNGD--------------LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKG----FSMMDVPV 121 (296)
T ss_pred EEEEecCCHH--------------HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEEccC
Confidence 9999998532 234443 45677788999999999999999999988877653 34568887
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
...+..+..+.. .+++|++ ++.+++++++|+.++. ..++.++++.+..+|+++|.+...+++.++|...+|
T Consensus 122 ~g~~~~a~~g~l---~~~~gg~-----~~~~~~~~p~l~~~g~-~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~ 192 (296)
T PRK15461 122 GRTSDNAITGTL---LLLAGGT-----AEQVERATPILMAMGN-ELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLC 192 (296)
T ss_pred CCCHHHHHhCcE---EEEECCC-----HHHHHHHHHHHHHHcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554433322 3678876 7889999999999974 466778899999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCC-------C-CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIG-------P-KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~-------~-~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
++.|+|++.+++++...+.-. . .+. ++.++|....+.||+.+..+.+++.|++ .++.+.+.+.=
T Consensus 193 ~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~--~p~~~~~~~~~ 266 (296)
T PRK15461 193 EALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVP--MPLGAASREVY 266 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence 999999999999987542100 1 111 2345687788999999999999999999 77777665433
No 13
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.97 E-value=2.8e-29 Score=235.26 Aligned_cols=253 Identities=19% Similarity=0.249 Sum_probs=202.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|||+|||+|.||.++|..|++. |++|++||+++++++.+.+. ....+++++++++++|
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~d 60 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA--GYSLVVYDRNPEAVAEVIAA-------------------GAETASTAKAVAEQCD 60 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence 47999999999999999999998 99999999999998877642 2345667888889999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|+|++. .++.++ +++.+.++++++|++.||+.|.+.+++.+.+++. | +.++.+|.
T Consensus 61 ~vi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~--g--~~~~d~pv 122 (296)
T PRK11559 61 VIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK--G--IEMLDAPV 122 (296)
T ss_pred EEEEeCCCHH--------------HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHc--C--CcEEEcCC
Confidence 9999998532 234444 4577888899999999999999998888877764 2 34578998
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
+..+..+..+.. .+++|++ +++++.++++++.++. .+++.++.+.++.+|+++|.+.+.++++++|+..+|
T Consensus 123 ~g~~~~a~~g~l---~i~~gg~-----~~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~ 193 (296)
T PRK11559 123 SGGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLA 193 (296)
T ss_pred CCCHHHHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877665544322 4778875 6789999999999873 456667789999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i-------~~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
++.|+|++++.+.+....-. .++++ ++.+||...++.||..++++.+++.|++ .++++++.+.=
T Consensus 194 ~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~~~ 266 (296)
T PRK11559 194 TKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAP--LPLTAAVMEMM 266 (296)
T ss_pred HHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence 99999999999998754210 01111 2346788999999999999999999999 77777766543
No 14
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.97 E-value=2.3e-28 Score=228.07 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=199.2
Q ss_pred EEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEe
Q 017997 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVS 85 (362)
Q Consensus 6 VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~ 85 (362)
|||+|.||.+||.+|+++ ||+|++||+++++++.+.+. +...++++.++++++|+||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~advVil~ 59 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA--GHPVRVFDLFPDAVEEAVAA-------------------GAQAAASPAEAAEGADRVITM 59 (288)
T ss_pred CCcccHhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCEEEEe
Confidence 689999999999999999 99999999999999888752 234566788889999999999
Q ss_pred ccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccccC
Q 017997 86 VNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEG 162 (362)
Q Consensus 86 vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~g 162 (362)
||++. .+.+++ +++.+.++++++|+++||+.|.+++++.+.+++. |. .++.+|...++.
T Consensus 60 vp~~~--------------~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~--g~--~~vdaPv~Gg~~ 121 (288)
T TIGR01692 60 LPAGQ--------------HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAH--GA--VFMDAPVSGGVG 121 (288)
T ss_pred CCChH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc--CC--cEEECCCCCCHH
Confidence 99642 245555 6788888899999999999999999998888765 22 457899887766
Q ss_pred ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Q 017997 163 TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGA 242 (362)
Q Consensus 163 ~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~ 242 (362)
.+..+.. .+++||+ ++.+++++++|+.++. ..+++++.+.++.+|+++|.+.+.+++.++|...+|++.|+
T Consensus 122 ~a~~g~l---~~~~gg~-----~~~~~~~~~~l~~~g~-~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl 192 (288)
T TIGR01692 122 GARAGTL---TFMVGGV-----AEEFAAAEPVLGPMGR-NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGL 192 (288)
T ss_pred HHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6544332 4678886 6788999999999873 45667778999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCC------C---C-------ccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHH
Q 017997 243 NVSQVAFAVGTDSRIGP------K---F-------LNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 243 d~~~v~~~~~~~~~i~~------~---~-------~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
|++++.+++...+.-++ . . -++.++|.-..+.||+.+..+.|++.|++ .++.+.+.+.
T Consensus 193 d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~~ 266 (288)
T TIGR01692 193 DPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAP--TPLGALARQL 266 (288)
T ss_pred CHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 99999999986531000 0 0 12345677778889999999999999999 7777766554
No 15
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=220.84 Aligned_cols=255 Identities=16% Similarity=0.203 Sum_probs=203.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|++||+|.||.+|+.+|.++ ||.|++|||+.++++.+.+. ..+...+|.|+++++|+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~--G~kVtV~dr~~~k~~~f~~~-------------------Ga~v~~sPaeVae~sDv 94 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA--GYKVTVYDRTKDKCKEFQEA-------------------GARVANSPAEVAEDSDV 94 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc--CCEEEEEeCcHHHHHHHHHh-------------------chhhhCCHHHHHhhcCE
Confidence 6899999999999999999999 99999999999999988763 24556788999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
||.|||+|.+. +.+..--..+.+.++++... |+.||+.|.+..++.+.++... ...+.+|...+
T Consensus 95 vitmv~~~~~v-----------~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~----~~~vDAPVSGg 159 (327)
T KOG0409|consen 95 VITMVPNPKDV-----------KDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG----GRFVDAPVSGG 159 (327)
T ss_pred EEEEcCChHhh-----------HHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC----CeEEeccccCC
Confidence 99999987532 12222223445555676666 8999999999999988777642 24578997766
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
...+..+.+ .+++||+ ++.+++..++|+.++. ..++.+..+.+..+|+++|...+..+..+.|...|++++
T Consensus 160 ~~~A~~G~L---timagGd-----e~~~~~~~~~~~~mGk-~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~ 230 (327)
T KOG0409|consen 160 VKGAEEGTL---TIMAGGD-----EALFEAASPVFKLMGK-NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRL 230 (327)
T ss_pred chhhhcCeE---EEEecCc-----HHHHHHHHHHHHHhcc-eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555555444 4778876 7899999999999973 455667899999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccC---------CCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 017997 241 GANVSQVAFAVGTDSRIGPKFLNA---------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKIN 303 (362)
Q Consensus 241 g~d~~~v~~~~~~~~~i~~~~~~~---------g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N 303 (362)
|+|..++++++++..-.++.+..| .|||+...+.||+...++.+.+.+.| .|+...+-++-
T Consensus 231 GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~--~P~~slA~qly 300 (327)
T KOG0409|consen 231 GLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVP--MPLGSLAHQLY 300 (327)
T ss_pred CCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCC--CchHHHHHHHH
Confidence 999999999999853222233333 35678889999999999999999988 67666544433
No 16
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.97 E-value=3.4e-28 Score=226.72 Aligned_cols=249 Identities=17% Similarity=0.181 Sum_probs=194.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||.+||.+|.++ ||+|++||+++. .+.+.+. .....+++.++++++|+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~--G~~v~v~~~~~~-~~~~~~~-------------------g~~~~~s~~~~~~~adv 58 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA--GHQLHVTTIGPV-ADELLSL-------------------GAVSVETARQVTEASDI 58 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCeEEEEeCCHh-HHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 6999999999999999999999 999999999874 4444321 13445677777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
||+|||++. .+++++ ..+.+.+.++++|+++||+.|.+++++.+.+.+.+ . .++.+|..
T Consensus 59 Vi~~v~~~~--------------~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~--~~vdaPVs 120 (292)
T PRK15059 59 IFIMVPDTP--------------QVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--G--DYLDAPVS 120 (292)
T ss_pred EEEeCCChH--------------HHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--C--CEEEecCC
Confidence 999998642 345554 23566678899999999999999999988887753 2 34678866
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
..+..+..+.. .+++||+ ++.+++++++|+.++. ..++.++.+.+..+|+++|.+.+.+++.+.|...+++
T Consensus 121 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~p~l~~~g~-~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~ 191 (292)
T PRK15059 121 GGEIGAREGTL---SIMVGGD-----EAVFERVKPLFELLGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFAS 191 (292)
T ss_pred CCHHHHhcCcE---EEEEcCC-----HHHHHHHHHHHHHHcC-CcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544432211 4677886 7889999999999973 4667788899999999999999999999999999999
Q ss_pred HhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHH
Q 017997 239 ATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIK 301 (362)
Q Consensus 239 ~~g~d~~~v~~~~~~~~~i-------~~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (362)
+.|+|++++.+++...+-- ..++. .+.++|....+.||+.+.++.|++.|++ .++.+.+.+
T Consensus 192 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~--~p~~~~~~~ 261 (292)
T PRK15059 192 KAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALN--LPNTATCQE 261 (292)
T ss_pred HcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence 9999999999998754310 11111 2336788889999999999999999998 677766554
No 17
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=99.96 E-value=1.7e-28 Score=189.03 Aligned_cols=96 Identities=44% Similarity=0.710 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCC
Q 017997 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNG 288 (362)
Q Consensus 209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g 288 (362)
+++||++|+++|+|++++|+|+||++.+|+++|+|+.+|++++++|||++.+++.||+||||+|||||+++|.+.+++.|
T Consensus 1 i~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~~~~~pg~g~GG~ClpkD~~~L~~~~~~~g 80 (96)
T PF00984_consen 1 IEEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGPHYLRPGPGFGGSCLPKDPYALIYLAKELG 80 (96)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTSSS-S-SSS--SSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccccccCCCCCCCCCcchhhhHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHh
Q 017997 289 LPEVAEYWKQVIKINDYQ 306 (362)
Q Consensus 289 ~~~~~~~~~~~~~~N~~~ 306 (362)
++ .+++++++++|++|
T Consensus 81 ~~--~~ll~~~~~~N~~Q 96 (96)
T PF00984_consen 81 YP--PQLLEAVININERQ 96 (96)
T ss_dssp SH--HHHHHHHHHHHHHH
T ss_pred CC--HHHHHHHHHhcCCC
Confidence 99 78999999999986
No 18
>PLN02858 fructose-bisphosphate aldolase
Probab=99.95 E-value=5.4e-26 Score=247.16 Aligned_cols=253 Identities=9% Similarity=0.053 Sum_probs=207.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|++||+|.||.+||.+|+++ ||+|++||+++++.+.+.+. ....++++.+++++||+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~~~s~~e~a~~adv 63 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS--GFKVQAFEISTPLMEKFCEL-------------------GGHRCDSPAEAAKDAAA 63 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence 5899999999999999999999 99999999999999988752 23556788898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
||+|+|++. .+++++ +.+.+.++++++|+++||+.|.+++++.+.+.+.+ ..+.++.+|..
T Consensus 64 Vi~~l~~~~--------------~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g--~~~~~lDaPVs 127 (1378)
T PLN02858 64 LVVVLSHPD--------------QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK--EQIFLVDAYVS 127 (1378)
T ss_pred EEEEcCChH--------------HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC--CceEEEEccCc
Confidence 999998652 355664 57888889999999999999999999988887753 22456889987
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe-CChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
.++..+..+.. .+++||+ ++.+++++++|+.++. ..+++ ++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus 128 Gg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la 198 (1378)
T PLN02858 128 KGMSDLLNGKL---MIIASGR-----SDAITRAQPFLSAMCQ-KLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALG 198 (1378)
T ss_pred CCHHHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhcC-ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666644433 4788987 7889999999999873 34444 6889999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHhcCCCCCCC-------CCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHH
Q 017997 238 EATGANVSQVAFAVGTDSRIGP-------KFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~~~~~i~~-------~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
++.|+|++.++++++..+--++ +++ .+.+||....+.||+.+.++.|++.|++ .++.+.+.+.
T Consensus 199 ~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~--lpl~~~a~~~ 270 (1378)
T PLN02858 199 VRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFP--LPLLAVAHQQ 270 (1378)
T ss_pred HHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 9999999999999986542111 111 2456788889999999999999999998 6777766653
No 19
>PLN02858 fructose-bisphosphate aldolase
Probab=99.95 E-value=8.7e-26 Score=245.55 Aligned_cols=254 Identities=13% Similarity=0.114 Sum_probs=202.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+++|+|||+|+||.+||.+|++. ||+|++||+++++++.+.+. + ....+++.+++++||
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~------------------G-a~~~~s~~e~~~~aD 382 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS--NFSVCGYDVYKPTLVRFENA------------------G-GLAGNSPAEVAKDVD 382 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc------------------C-CeecCCHHHHHhcCC
Confidence 37899999999999999999999 99999999999999887652 1 234567888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH---HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~---~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|||+|. .+++++ ..+.+.++++++||++||+.|++++++.+.+++.+ ..+.++.+|.
T Consensus 383 vVi~~V~~~~--------------~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g--~g~~~lDAPV 446 (1378)
T PLN02858 383 VLVIMVANEV--------------QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEG--RDIKLVDAPV 446 (1378)
T ss_pred EEEEecCChH--------------HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhC--CCcEEEEccC
Confidence 9999999763 234454 45677788999999999999999999988887632 2356788998
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe-CChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT-TNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
..++..+..+.. .+++||+ ++.+++++++|+.++. ..++. ++++.++.+|+++|.+.+.+++.++|+..+
T Consensus 447 sGg~~~A~~G~L---~imvgG~-----~~~~~~~~plL~~lg~-~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~l 517 (1378)
T PLN02858 447 SGGVKRAAMGTL---TIMASGT-----DEALKSAGSVLSALSE-KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAF 517 (1378)
T ss_pred CCChhhhhcCCc---eEEEECC-----HHHHHHHHHHHHHHhC-cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766665544322 4778987 6889999999999873 34443 579999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhcCCCCC-------CCCCc--cCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHHHHHHH
Q 017997 237 CEATGANVSQVAFAVGTDSRI-------GPKFL--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 237 ~~~~g~d~~~v~~~~~~~~~i-------~~~~~--~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
+++.|+|+++++++++..+.- .++++ .+.++|....+.||+.++++.+++.|++ .++...+.+.
T Consensus 518 a~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~--~pl~~~~~~~ 590 (1378)
T PLN02858 518 GARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIP--LHLSTVAHQL 590 (1378)
T ss_pred HHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 999999999999988654311 11111 2346788889999999999999999999 6776666653
No 20
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.95 E-value=1.8e-25 Score=219.64 Aligned_cols=258 Identities=13% Similarity=0.083 Sum_probs=201.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC--
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE-- 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (362)
+++|+|||+|.||.+||.+|+++ ||+|++|||++++++.+.+.... .+ ...+..+++++++++.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~--G~~V~V~NRt~~k~~~l~~~~~~---~G---------a~~~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EG---------NLPLYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhhh---cC---------CcccccCCCHHHHHhcCC
Confidence 46899999999999999999999 99999999999999987652000 00 0113355677776665
Q ss_pred -CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 79 -ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 79 -aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+|+||+|||.+ ..++++++.+.+.+.++++||++||+.|.+++++.+.+++.+ +.++.+|.
T Consensus 72 ~~dvIi~~v~~~--------------~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G----i~fldapV 133 (493)
T PLN02350 72 KPRSVIILVKAG--------------APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG----LLYLGMGV 133 (493)
T ss_pred CCCEEEEECCCc--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEeCCC
Confidence 99999999864 256788888999999999999999999999988888777652 35678898
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-----CcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-----DRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
..++..+..+ + .+++||+ +++.++++++++.++.+ ..+++++.+.+..+|+++|.+.+..+..+.|
T Consensus 134 SGG~~gA~~G---~-~im~GG~-----~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaE 204 (493)
T PLN02350 134 SGGEEGARNG---P-SLMPGGS-----FEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISE 204 (493)
T ss_pred cCCHHHhcCC---C-eEEecCC-----HHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665433 2 6889987 78999999999998731 2456788899999999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHH---hcCCCCCCC------CCc----cCCCCCcccChhHhHH------HHHHHHHhCCCchh
Q 017997 233 MSALCEA-TGANVSQVAFA---VGTDSRIGP------KFL----NASVGFGGSCFQKDIL------NLVYICECNGLPEV 292 (362)
Q Consensus 233 ~~~l~~~-~g~d~~~v~~~---~~~~~~i~~------~~~----~~g~g~gg~cl~kD~~------~l~~~a~~~g~~~~ 292 (362)
...++++ .|+|++++.++ ++..+--++ ..+ ..+++|--..+.||.. .....|.+.|+|
T Consensus 205 A~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~-- 282 (493)
T PLN02350 205 AYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVA-- 282 (493)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCC--
Confidence 9999999 59999999888 444321000 111 1345677788999999 899999999999
Q ss_pred HHH-HHHHHH
Q 017997 293 AEY-WKQVIK 301 (362)
Q Consensus 293 ~~~-~~~~~~ 301 (362)
.|+ .+++..
T Consensus 283 ~p~i~~av~~ 292 (493)
T PLN02350 283 APTIAASLDA 292 (493)
T ss_pred ccHHHHHHHH
Confidence 676 444443
No 21
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.95 E-value=2.6e-25 Score=208.44 Aligned_cols=249 Identities=16% Similarity=0.118 Sum_probs=196.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (362)
|+|+|||+|.||.+||.+|+++ |++|++||+++++.+.+.+. ....+.++++++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL-------------------GITARHSLEELVSKLEA 59 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHHhCCC
Confidence 6999999999999999999998 99999999999999887642 23456677776655
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|+|++ ..++++++.+.+.++++++||++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 advVi~~vp~~--------------~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~vdapV~ 121 (299)
T PRK12490 60 PRTIWVMVPAG--------------EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERG----IHYVDCGTS 121 (299)
T ss_pred CCEEEEEecCc--------------hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcC----CeEEeCCCC
Confidence 69999999854 245777788888889999999999999999988877776652 345789987
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC--CcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE--DRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
..+..+..+. .+++||+ ++++++++++++.++.. ..++.++++.+..+|+++|.+....++.+.|...+
T Consensus 122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l 192 (299)
T PRK12490 122 GGVWGLRNGY----CLMVGGD-----KEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLEL 192 (299)
T ss_pred CCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665554431 3778987 78899999999998731 35667889999999999999999999999999999
Q ss_pred HHHhC--CCHHHHHHHhcCCCCCCCC--------CccCCCCCcccChhHhH---HHHHHHHHhCCCchhHHHHHHHH
Q 017997 237 CEATG--ANVSQVAFAVGTDSRIGPK--------FLNASVGFGGSCFQKDI---LNLVYICECNGLPEVAEYWKQVI 300 (362)
Q Consensus 237 ~~~~g--~d~~~v~~~~~~~~~i~~~--------~~~~g~g~gg~cl~kD~---~~l~~~a~~~g~~~~~~~~~~~~ 300 (362)
+++.| +|+.++++.++......+. +..-...+.-..+-||. .+.++.|++.|++ .|++.+++
T Consensus 193 ~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l~~~~KD~~~~~l~~~~A~~~g~~--~P~~~~a~ 267 (299)
T PRK12490 193 LDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGIKGYVNDSGEGRWTVEEAIELAVA--APVIAASL 267 (299)
T ss_pred HHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhhhHHHHhcCcHHHHHHHHHHcCCC--HHHHHHHH
Confidence 99999 9999999999853211110 11100112336778997 7899999999999 78888775
No 22
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.94 E-value=1.9e-25 Score=212.01 Aligned_cols=280 Identities=19% Similarity=0.225 Sum_probs=199.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC-CCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|.||.++|..|+++ ||+|++||+++++++.+++... ..+.++.. ...++.++++++++++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 72 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN--GHDVTLWARDPEQAAEINADRENPRYLPGIK------LPDNLRATTDLAEALADA 72 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccCCCCc------CCCCeEEeCCHHHHHhCC
Confidence 79999999999999999999999 9999999999999998887432 22222211 122467778888778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee-CCccccHHHHHHHHHhccCC-CceEEeeCCc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKG-IKFQILSNPE 157 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S-Tv~~gt~~~l~~~l~~~~~g-~~~~v~~~Pe 157 (362)
|+||+|||++ ++.++++++.+.++++++|+..+ |+.+.+.+.+.+.+++.... ....+..+|.
T Consensus 73 D~vi~~v~~~---------------~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~ 137 (325)
T PRK00094 73 DLILVAVPSQ---------------ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPS 137 (325)
T ss_pred CEEEEeCCHH---------------HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECcc
Confidence 9999999852 46788889999888888887766 88888776676666654321 1345667787
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHH-----------------HHHHHh
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL-----------------SKLAAN 220 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~-----------------~Kl~~N 220 (362)
...+..+ ..+..+++++. +.+..++++++|+..+. .++...|+...+| .|+..|
T Consensus 138 ~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n 208 (325)
T PRK00094 138 FAKEVAR----GLPTAVVIAST----DEELAERVQELFHSPYF-RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDN 208 (325)
T ss_pred HHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCCE-EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 6544322 23334455554 26788999999998652 2344567666666 577788
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC----CCC--CCCccCCCCCcc--------------cChhHhHHHH
Q 017997 221 AFLAQRISSVNAMSALCEATGANVSQVAFAVGTDS----RIG--PKFLNASVGFGG--------------SCFQKDILNL 280 (362)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~----~i~--~~~~~~g~g~gg--------------~cl~kD~~~l 280 (362)
.+.++..+.++|+..+|+++|+|++++.+..+... ..+ .+.+.||.-++. .-..||..++
T Consensus 209 ~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~ 288 (325)
T PRK00094 209 ARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAV 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHH
Confidence 89999999999999999999999999988755321 001 111122211211 2346999999
Q ss_pred HHHHHhCCCchhHHHHHHHHH--HHHHhHHHHHHHH
Q 017997 281 VYICECNGLPEVAEYWKQVIK--INDYQKSRFVNRV 314 (362)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~--~N~~~~~~~~~~~ 314 (362)
.+.++++|++ .|+.+++.+ .|+.-|+.+++++
T Consensus 289 ~~~a~~~~~~--~P~~~~~~~~~~~~~~~~~~~~~~ 322 (325)
T PRK00094 289 YELAKKLGVE--MPITEAVYAVLYEGKDPREAVEDL 322 (325)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999998 788887775 4455566666655
No 23
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.93 E-value=2.9e-23 Score=194.81 Aligned_cols=248 Identities=17% Similarity=0.147 Sum_probs=191.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC---
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE--- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~--- 78 (362)
|||+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+. ..+.+++++++++.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~~~ 59 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE-------------------GATGADSLEELVAKLPA 59 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHhhcCC
Confidence 6999999999999999999999 99999999999999887642 24456677776654
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|+|.+. .+.++++.+.+.+++++++|+.||+.|.+++++.+.+++. | +.++.+|..
T Consensus 60 ~dvvi~~v~~~~--------------~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~--g--~~~~dapvs 121 (301)
T PRK09599 60 PRVVWLMVPAGE--------------ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK--G--IHFVDVGTS 121 (301)
T ss_pred CCEEEEEecCCc--------------HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc--C--CEEEeCCCC
Confidence 699999998532 3567778888889999999999999998888887777665 2 344688877
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC---CcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE---DRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
..+..+..+ . .+++||+ ++++++++++|+.+... ..++.++++.+..+|+++|.+....+..+.|...
T Consensus 122 G~~~~a~~g---~-~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~ 192 (301)
T PRK09599 122 GGVWGLERG---Y-CLMIGGD-----KEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFE 192 (301)
T ss_pred cCHHHHhcC---C-eEEecCC-----HHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555433 2 4788987 78899999999998731 3466788999999999999999999999999999
Q ss_pred HHHH--hCCCHHHHHHHhcCCCCCCCCCc-------cCCCCCc-ccChhHh---HHHHHHHHHhCCCchhHHHHHHH
Q 017997 236 LCEA--TGANVSQVAFAVGTDSRIGPKFL-------NASVGFG-GSCFQKD---ILNLVYICECNGLPEVAEYWKQV 299 (362)
Q Consensus 236 l~~~--~g~d~~~v~~~~~~~~~i~~~~~-------~~g~g~g-g~cl~kD---~~~l~~~a~~~g~~~~~~~~~~~ 299 (362)
++++ .|+|+.++.+++.....+++.++ .-.+.+. -.-+-|| .+.....|.+.|++ .|.+.++
T Consensus 193 l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~A~~~~~~--~P~~~~a 267 (301)
T PRK09599 193 LLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVEDSGEGRWTVEEAIDLAVP--APVIAAA 267 (301)
T ss_pred HHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCcHHHHHHHHHHcCCC--HHHHHHH
Confidence 9999 99999999999986431111111 1112221 0122455 48888899999999 7777764
No 24
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.91 E-value=8.3e-23 Score=188.22 Aligned_cols=221 Identities=24% Similarity=0.306 Sum_probs=183.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+|||+|||.|.||+++|..|+++ ||+|.+|.++++.++.|++. .++-|.|+.. ...++.+++|+.++++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n--g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~------lp~~l~at~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN--GHEVRLWGRDEEIVAEINETRENPKYLPGIL------LPPNLKATTDLAEALDGA 72 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhcCcCccccCCcc------CCcccccccCHHHHHhcC
Confidence 68999999999999999999999 99999999999999999986 4555666543 356799999999999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
|+|+++||+. .+.++++++..+++++.+++..|+ +.++|.+.+.+++++..+...+.++++|.+
T Consensus 73 d~iv~avPs~---------------~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 73 DIIVIAVPSQ---------------ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred CEEEEECChH---------------HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence 9999999863 578999999888999999988888 888898999988887754334788999999
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEE-eCChhHHHHH-----------------HHHHh
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRIL-TTNLWSAELS-----------------KLAAN 220 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ae~~-----------------Kl~~N 220 (362)
..+-.. ..|+.+++++.+ ++..+.++.+|.+-. .+++ ..|+...|+. ++..|
T Consensus 138 A~EVa~----g~pta~~vas~d----~~~a~~v~~~f~~~~--Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 138 AKEVAQ----GLPTAVVVASND----QEAAEKVQALFSSPY--FRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred HHHHhc----CCCcEEEEecCC----HHHHHHHHHHhCCCc--EEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChh
Confidence 876443 567778888874 788899999998732 3444 4687665554 35578
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 017997 221 AFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 221 ~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
+-.++....++||.+|...+|.++++++.+.|..
T Consensus 208 akaalitrGL~Em~rlg~~lG~~~~T~~gLsGlG 241 (329)
T COG0240 208 AKAALITRGLAEMTRLGVALGAKPETFMGLSGLG 241 (329)
T ss_pred HHHHHHHhHHHHHHHHHHHhCCCcchhccccccc
Confidence 8889999999999999999999999988887753
No 25
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.91 E-value=3.5e-22 Score=187.11 Aligned_cols=248 Identities=17% Similarity=0.172 Sum_probs=186.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh---hhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK---HVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (362)
|||+|||+|.||.++|.+|+++ ||+|++||+++++++.+.+.. ....+++++ .+..
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDR-------------------TTGVANLRELSQRLSA 59 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcC-------------------CcccCCHHHHHhhcCC
Confidence 7999999999999999999999 999999999999999887632 111233333 3457
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|||++ .+.++++++.+.++++++|++.||..|.++.++...+++. | +.++.+|..
T Consensus 60 ~dvIi~~vp~~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~--g--~~~vda~vs 120 (298)
T TIGR00872 60 PRVVWVMVPHG---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEK--G--IHLLDCGTS 120 (298)
T ss_pred CCEEEEEcCch---------------HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhc--C--CeEEecCCC
Confidence 89999999853 3578889999999999999999998888887776666654 2 345677765
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC--CcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE--DRILTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
.++..+..+ ..+++||+ +++.+.++++|+.+... ..++.++.+.+..+|+++|.+...++..+.|...+
T Consensus 121 Gg~~~a~~G----~~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l 191 (298)
T TIGR00872 121 GGVWGRERG----YCFMIGGD-----GEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEI 191 (298)
T ss_pred CCHHHHhcC----CeeeeCCC-----HHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444332 24778987 78999999999998742 24667888999999999999999999999999999
Q ss_pred HHHh--CCCHHHHHHHhcCCCCCCCCCc---------cCC-CCCccc-ChhHhHHHHHHHHHhCCCchhHHHHHHHH
Q 017997 237 CEAT--GANVSQVAFAVGTDSRIGPKFL---------NAS-VGFGGS-CFQKDILNLVYICECNGLPEVAEYWKQVI 300 (362)
Q Consensus 237 ~~~~--g~d~~~v~~~~~~~~~i~~~~~---------~~g-~g~gg~-cl~kD~~~l~~~a~~~g~~~~~~~~~~~~ 300 (362)
+++. |+|++++.+.++...-+.+.++ +|. +.|-.. --.+|.+..+..|.+.|+| .|.+.+++
T Consensus 192 ~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p--~P~~~~al 266 (298)
T TIGR00872 192 LRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIAAIDLGVP--APVIATSL 266 (298)
T ss_pred HHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHHHHHhCCC--HHHHHHHH
Confidence 9997 5799999999887542222111 111 112211 1345667788888889998 77777655
No 26
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.90 E-value=3.1e-22 Score=196.72 Aligned_cols=210 Identities=13% Similarity=0.108 Sum_probs=170.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc---
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--- 77 (362)
|++|+|||+|.||.+||.+|+++ ||+|++|||++++++.+++.... + ...+..+++++++++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~--G~~V~v~dr~~~~~~~l~~~~~~---~----------g~~i~~~~s~~e~v~~l~ 65 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR--GFKISVYNRTYEKTEEFVKKAKE---G----------NTRVKGYHTLEELVNSLK 65 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhhhh---c----------CCcceecCCHHHHHhcCC
Confidence 67999999999999999999999 99999999999999988752100 0 012456778888765
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
++|+||+|||.+ ..+.++++++.+++.++++||+.||..+..+.+....+.+. | +.++.+|.
T Consensus 66 ~~d~Iil~v~~~--------------~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~--G--i~fldapV 127 (470)
T PTZ00142 66 KPRKVILLIKAG--------------EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEK--G--ILYLGMGV 127 (470)
T ss_pred CCCEEEEEeCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc--C--CeEEcCCC
Confidence 589999998743 35788889999999999999999998777777766666654 2 34578887
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-----CcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-----DRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
..++..+..+ +.+++||+ +++.++++++|+.+..+ ...++++.+.+..+|+++|.+.+..+..+.|
T Consensus 128 SGG~~gA~~G----~~lm~GG~-----~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaE 198 (470)
T PTZ00142 128 SGGEEGARYG----PSLMPGGN-----KEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISE 198 (470)
T ss_pred CCCHHHHhcC----CEEEEeCC-----HHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 7766555432 36899997 78999999999998742 0356788899999999999999999999999
Q ss_pred HHHHHH-HhCCCHHHHHHHhc
Q 017997 233 MSALCE-ATGANVSQVAFAVG 252 (362)
Q Consensus 233 ~~~l~~-~~g~d~~~v~~~~~ 252 (362)
...+++ ..|+|++++.+.+.
T Consensus 199 a~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 199 SYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred HHHHHHhhcCCCHHHHHHHHH
Confidence 999998 69999999988873
No 27
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.87 E-value=1.5e-20 Score=178.61 Aligned_cols=275 Identities=16% Similarity=0.133 Sum_probs=185.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+|||+|||+|.||+++|..|+++ ||+|++|++++++.+.+++.+ ...+.++.. ...++..+++++++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~--G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~------~~~~~~~~~~~~e~~~~a 75 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK--GVPVRLWARRPEFAAALAAERENREYLPGVA------LPAELYPTADPEEALAGA 75 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhCcccccCCCCc------CCCCeEEeCCHHHHHcCC
Confidence 58999999999999999999999 999999999999998887532 112212210 112366778888888999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Ccccc--HHHHHHHHHhccCCCceEEeeCC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKT--AEAIEKILTHNSKGIKFQILSNP 156 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt--~~~l~~~l~~~~~g~~~~v~~~P 156 (362)
|+||+|+|+. .++++ .+.++++.+++..++ +.+.+ .+.+.+.+++... ..+.+..+|
T Consensus 76 D~Vi~~v~~~---------------~~~~v----~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~~~~gP 135 (328)
T PRK14618 76 DFAVVAVPSK---------------ALRET----LAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQ-ARVAVLSGP 135 (328)
T ss_pred CEEEEECchH---------------HHHHH----HHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcC-CCeEEEECc
Confidence 9999999852 23333 355667778887787 66665 5667766654111 123455677
Q ss_pred cccccCccccccCCCC-eEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHH-----------------HHHH
Q 017997 157 EFLAEGTAIQDLFNPD-RVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL-----------------SKLA 218 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~-~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~-----------------~Kl~ 218 (362)
....+... ..+. .++.|++ ++..++++++|+..+. ..+...|+...+| .|+.
T Consensus 136 ~~a~~~~~----~~~~~~~~~~~~-----~~~~~~v~~ll~~~~~-~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~ 205 (328)
T PRK14618 136 NHAEEIAR----FLPAATVVASPE-----PGLARRVQAAFSGPSF-RVYTSRDRVGVELGGALKNVIALAAGMVDGLKLG 205 (328)
T ss_pred cHHHHHHc----CCCeEEEEEeCC-----HHHHHHHHHHhCCCcE-EEEecCCccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence 66554322 1121 2344443 6788999999998652 2333345444444 4566
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-------CCCCCCC-----ccC-------CCCCcccChhHhHHH
Q 017997 219 ANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD-------SRIGPKF-----LNA-------SVGFGGSCFQKDILN 279 (362)
Q Consensus 219 ~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~-------~~i~~~~-----~~~-------g~g~gg~cl~kD~~~ 279 (362)
+|...++..+.++|+..+++++|+|++++++.++.. +..+.++ +-. .++|.-.-..||..+
T Consensus 206 ~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~ 285 (328)
T PRK14618 206 DNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKA 285 (328)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHH
Confidence 788889999999999999999999999999998741 1111111 001 123444567899999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHH-H-HHhHHHHHHHHH
Q 017997 280 LVYICECNGLPEVAEYWKQVIKI-N-DYQKSRFVNRVV 315 (362)
Q Consensus 280 l~~~a~~~g~~~~~~~~~~~~~~-N-~~~~~~~~~~~~ 315 (362)
+.+++++.+++ .|+++.+.++ + +.-|+..++.++
T Consensus 286 ~~~la~~~~~~--~Pl~~~~~~~~~~~~~~~~~~~~~~ 321 (328)
T PRK14618 286 LDAWAKAHGHD--LPIVEAVARVARGGWDPLAGLRSLM 321 (328)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 99999999998 7888877753 2 234565555554
No 28
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.87 E-value=1.4e-21 Score=167.16 Aligned_cols=152 Identities=20% Similarity=0.264 Sum_probs=120.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
||||+|||+|.||.+||.+|+++ ||+|++||+++++.+.+.+. ..+.++++.++++++|
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~s~~e~~~~~d 59 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA-------------------GAEVADSPAEAAEQAD 59 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT-------------------TEEEESSHHHHHHHBS
T ss_pred CCEEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh-------------------hhhhhhhhhhHhhccc
Confidence 89999999999999999999999 99999999999999988752 3778899999999999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHH--HHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARV--IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~--i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+||+|||.+ ..+++++.+ +.+.+++++++|++||+.|.+++++.+.+++.+ +.++.+|..
T Consensus 60 vvi~~v~~~--------------~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapV~ 121 (163)
T PF03446_consen 60 VVILCVPDD--------------DAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG----VRYVDAPVS 121 (163)
T ss_dssp EEEE-SSSH--------------HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT----EEEEEEEEE
T ss_pred ceEeecccc--------------hhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc----ceeeeeeee
Confidence 999999853 357888888 999999999999999999999999988887753 466788876
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
..+..+..... .+++||+ ++++++++++|+.++
T Consensus 122 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~~l~~~~ 154 (163)
T PF03446_consen 122 GGPPGAEEGTL---TIMVGGD-----EEAFERVRPLLEAMG 154 (163)
T ss_dssp SHHHHHHHTTE---EEEEES------HHHHHHHHHHHHHHE
T ss_pred cccccccccce---EEEccCC-----HHHHHHHHHHHHHHh
Confidence 65544433322 4788987 789999999999987
No 29
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.87 E-value=1.3e-20 Score=185.20 Aligned_cols=206 Identities=13% Similarity=0.151 Sum_probs=163.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh---cCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV---SEA 79 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~---~~a 79 (362)
+|+|||+|.||.+||.+|+++ ||+|++||+++++++.+.+.... ...+...+++++.+ +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~--G~~V~v~drt~~~~~~l~~~~~~--------------g~~~~~~~s~~e~v~~l~~~ 64 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH--GFTVSVYNRTPEKTDEFLAEHAK--------------GKKIVGAYSIEEFVQSLERP 64 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHhhccC--------------CCCceecCCHHHHHhhcCCC
Confidence 589999999999999999999 99999999999999988752100 01133445555544 578
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|||.+ ..+.++++++.++++++++||+.||..+..+.+..+.+.+. | +.++.+|...
T Consensus 65 dvIil~v~~~--------------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~--g--i~fvdapVsG 126 (467)
T TIGR00873 65 RKIMLMVKAG--------------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAK--G--ILFVGSGVSG 126 (467)
T ss_pred CEEEEECCCc--------------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhc--C--CEEEcCCCCC
Confidence 9999999853 24678889999999999999999998777766665556554 2 3567888777
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCC-----cEEeCChhHHHHHHHHHhHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPED-----RILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (362)
++..+.++ +.+++||+ +++.++++++|+.+..+. .+++++.+.+..+|+++|.+.+..+..+.|..
T Consensus 127 G~~gA~~G----~~im~GG~-----~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~ 197 (467)
T TIGR00873 127 GEEGARKG----PSIMPGGS-----AEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAY 197 (467)
T ss_pred CHHHHhcC----CcCCCCCC-----HHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655443 25788987 789999999999987421 25678889999999999999999999999999
Q ss_pred HHHH-HhCCCHHHHHHHh
Q 017997 235 ALCE-ATGANVSQVAFAV 251 (362)
Q Consensus 235 ~l~~-~~g~d~~~v~~~~ 251 (362)
.+++ +.|+|++++.+.+
T Consensus 198 ~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 198 DILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHhcCCCHHHHHHHH
Confidence 9985 6999999999988
No 30
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.85 E-value=1.9e-19 Score=169.48 Aligned_cols=252 Identities=15% Similarity=0.073 Sum_probs=165.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHhhhcCCCEEEec
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
||+|+|||+|.||.++|..|+++ ||+|++||++++.++.+++.. -.+.+..... ..+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~-----~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDA-----VLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHH-----HhcCeEEEC
Confidence 57999999999999999999999 999999999998887654210 0000000111 124578899
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCce
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF 150 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~ 150 (362)
++++++++||+|++|+|... ......++.+.+..+++.++ .+||.+ -....+.+.+... ..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~ii-~ssts~-~~~~~la~~~~~~----~~ 135 (308)
T PRK06129 75 SLADAVADADYVQESAPENL-------------ELKRALFAELDALAPPHAIL-ASSTSA-LLASAFTEHLAGR----ER 135 (308)
T ss_pred cHHHhhCCCCEEEECCcCCH-------------HHHHHHHHHHHHhCCCcceE-EEeCCC-CCHHHHHHhcCCc----cc
Confidence 99888899999999998542 12345666776666555544 444443 3455565554332 23
Q ss_pred EEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHH
Q 017997 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (362)
Q Consensus 151 ~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (362)
+++.+|-. |.... +-..++++..+ +++++++++++++.++ +.++++.....+ ++.|. +..+++
T Consensus 136 ~~~~hp~~--p~~~~-----~lveiv~~~~t--~~~~~~~~~~~~~~lG-~~~v~v~~~~~G----~i~nr---l~~a~~ 198 (308)
T PRK06129 136 CLVAHPIN--PPYLI-----PVVEVVPAPWT--APATLARAEALYRAAG-QSPVRLRREIDG----FVLNR---LQGALL 198 (308)
T ss_pred EEEEecCC--CcccC-----ceEEEeCCCCC--CHHHHHHHHHHHHHcC-CEEEEecCCCcc----HHHHH---HHHHHH
Confidence 56667742 22211 11235664433 5889999999999987 345655433333 24455 356999
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcCCCC-----CCCCC--ccCCCCCcccChhHhHHHHHHHHHhCCCchhHHHHH
Q 017997 231 NAMSALCEATGANVSQVAFAVGTDSR-----IGPKF--LNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWK 297 (362)
Q Consensus 231 nE~~~l~~~~g~d~~~v~~~~~~~~~-----i~~~~--~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~ 297 (362)
+|...++++.|+|++++.+++..... .|+.. -..++|+-...+.||..+..+.+++.+.+ .++++
T Consensus 199 ~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~--~~~~~ 270 (308)
T PRK06129 199 REAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP--VPWDG 270 (308)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC--chhhH
Confidence 99999999999999999999865431 12110 01234555678899999999999988877 44443
No 31
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.85 E-value=1.8e-19 Score=171.83 Aligned_cols=220 Identities=17% Similarity=0.143 Sum_probs=166.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC-CCC-ChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPI-YEP-GLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~-~e~-~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
+|||+|||+|.||+.+|..|+++ | +|++|.+++++++.+++.+.+. +.+ +.. ...++.+++|+++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~--g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~------l~~~i~~t~d~~~a~~~ 77 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR--G-PTLQWVRSAETADDINDNHRNSRYLGNDVV------LSDTLRATTDFAEAANC 77 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC--C-CEEEEeCCHHHHHHHHhcCCCcccCCCCcc------cCCCeEEECCHHHHHhc
Confidence 58999999999999999999998 7 6889999999999999865332 222 111 12457889999888999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee-CCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS-TVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+|+||+|||+. ++.++++++.++++++++|+..+ .++.++.+.+.+.+++..++..+.+.++|.
T Consensus 78 aDlVilavps~---------------~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~ 142 (341)
T PRK12439 78 ADVVVMGVPSH---------------GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPN 142 (341)
T ss_pred CCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCC
Confidence 99999999842 57889999999998887665444 477777766766666543223456778898
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH---------------
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF--------------- 222 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~--------------- 222 (362)
+..+... ..+..+++++.+ ++..+.++++|++-. ...+...|+...||.|.+-|.+
T Consensus 143 ~a~ev~~----g~~t~~via~~~----~~~~~~v~~lf~~~~-~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n 213 (341)
T PRK12439 143 IAREVAE----GYAAAAVLAMPD----QHLATRLSPLFRTRR-FRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGEN 213 (341)
T ss_pred HHHHHHc----CCCeEEEEEeCC----HHHHHHHHHHhCCCC-EEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 7765332 234456677663 678899999998753 1234457999999999886663
Q ss_pred --HHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 223 --LAQRISSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 223 --~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
.++....++|+.++++.+|.+++++....|.
T Consensus 214 ~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~ 246 (341)
T PRK12439 214 TRAMVIARALREMTKLGVAMGGNPETFAGLAGM 246 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccccchh
Confidence 4667789999999999999999999988775
No 32
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.83 E-value=2.5e-19 Score=168.76 Aligned_cols=252 Identities=15% Similarity=0.185 Sum_probs=170.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||.++|..|+++ ||+|++|++++. ++++++++++|+
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~--G~~V~~~~r~~~--------------------------------~~~~~~~~~adv 50 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN--GHRVRVWSRRSG--------------------------------LSLAAVLADADV 50 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCEEEEEeCCCC--------------------------------CCHHHHHhcCCE
Confidence 7999999999999999999999 999999999731 245566889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-cCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
||+|+|++ .+.++++.+.++ ++++++|+..|+ +.|.+.+.+...+........+.++++|...
T Consensus 51 vi~~vp~~---------------~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a 115 (308)
T PRK14619 51 IVSAVSMK---------------GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLS 115 (308)
T ss_pred EEEECChH---------------HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence 99999852 457777888764 677888888776 8887766665555543222233344666543
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHH-----------------HHHHhHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELS-----------------KLAANAF 222 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~-----------------Kl~~N~~ 222 (362)
.+-. . ..+..+++++.+ .+..+.++++|+..+. ..+...|+...++. |+..|..
T Consensus 116 ~ei~---~-~~~~~~~~ag~~----~~~~~~v~~ll~~~~~-~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~ 186 (308)
T PRK14619 116 KEIQ---Q-GLPAATVVASRD----LAAAETVQQIFSSERF-RVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAK 186 (308)
T ss_pred HHHh---c-CCCeEEEEEeCC----HHHHHHHHHHhCCCcE-EEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHH
Confidence 2200 0 112223344442 7889999999998641 23444564433333 3667888
Q ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC-CC---C--CCCccCCCCCcccCh----------------hHhHHHH
Q 017997 223 LAQRISSVNAMSALCEATGANVSQVAFAVGTDS-RI---G--PKFLNASVGFGGSCF----------------QKDILNL 280 (362)
Q Consensus 223 ~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~-~i---~--~~~~~~g~g~gg~cl----------------~kD~~~l 280 (362)
.++....++|+..+++++|+|+.++.+..+... .. + .+-+. +||.-.-. .||...+
T Consensus 187 ~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~~--~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~ 264 (308)
T PRK14619 187 AALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQ--VGYGLAQGKSLEQILAELEGTAEGVNTANVL 264 (308)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccHH--HHHHHHCCCCHHHHHHhcCCEeecHHHHHHH
Confidence 888999999999999999999999987543321 00 0 01112 23211122 7899999
Q ss_pred HHHHHhCCCchhHHHHHHHHHH--HHHhHHHHHHHHH
Q 017997 281 VYICECNGLPEVAEYWKQVIKI--NDYQKSRFVNRVV 315 (362)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~ 315 (362)
.+++++.|++ .|+++++.++ |+--|+.+++.++
T Consensus 265 ~~~~~~~~~~--~Pl~~~v~~i~~~~~~~~~~~~~l~ 299 (308)
T PRK14619 265 VQLAQQQNIA--VPITEQVYRLLQGEITPQQALEELM 299 (308)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999999998 7888877753 3334555555554
No 33
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.83 E-value=5.5e-19 Score=167.24 Aligned_cols=221 Identities=16% Similarity=0.183 Sum_probs=168.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCC--------CeEEEEeC-----CHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPS--------IEVAVVDI-----SVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF 68 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G--------~~V~~~d~-----~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~ 68 (362)
||+|||.|.||+++|..|+++ | |+|.+|.+ +++..+.+++.+ .+.+.|+.. ...++++
T Consensus 1 kI~VIGaG~wGtALA~~la~n--g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~------Lp~~i~a 72 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN--ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK------LPANLVA 72 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc------CCCCeEE
Confidence 699999999999999999998 8 99999999 778888888754 344445532 2456899
Q ss_pred ecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Cccc--cHHHHHHHHHhcc
Q 017997 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVK--TAEAIEKILTHNS 145 (362)
Q Consensus 69 t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~g--t~~~l~~~l~~~~ 145 (362)
++|++++++++|+||++||+ ..+.++++++.++++++++++..+. +.+. +...+.+.+++..
T Consensus 73 t~dl~eal~~ADiIIlAVPs---------------~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l 137 (342)
T TIGR03376 73 VPDLVEAAKGADILVFVIPH---------------QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL 137 (342)
T ss_pred ECCHHHHHhcCCEEEEECCh---------------HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh
Confidence 99999999999999999985 2578889999999988888877776 6665 6666777666654
Q ss_pred CCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEE-eCChhHHHHHH--------
Q 017997 146 KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRIL-TTNLWSAELSK-------- 216 (362)
Q Consensus 146 ~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ae~~K-------- 216 (362)
+..+.++++|.+..+-.. ..|..+++++.+...-.+..+.++++|++-. .+++ ..|+...|+..
T Consensus 138 -~~~~~~lsGP~~A~Eva~----~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~--frv~~s~Dv~GvEl~galKNv~AI 210 (342)
T TIGR03376 138 -GIPCGVLSGANLANEVAK----EKFSETTVGYRDPADFDVDARVLKALFHRPY--FRVNVVDDVAGVEIAGALKNVVAI 210 (342)
T ss_pred -CCCeEEeeCcchHHHHHc----CCCceEEEEeCCCcchHHHHHHHHHHhCCCC--EEEEEcCCcccchhhHHHHHHHHH
Confidence 346778999998876442 5666778887731000678899999998632 2444 46877666553
Q ss_pred ---------HHHhHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcC
Q 017997 217 ---------LAANAFLAQRISSVNAMSALCEATGANVS--QVAFAVGT 253 (362)
Q Consensus 217 ---------l~~N~~~~~~ia~~nE~~~l~~~~g~d~~--~v~~~~~~ 253 (362)
+-.|+..++....++||.++++.+|.+++ ++....|.
T Consensus 211 a~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~ 258 (342)
T TIGR03376 211 AAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGV 258 (342)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchh
Confidence 33677788899999999999999999877 78776664
No 34
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.83 E-value=6.1e-19 Score=168.02 Aligned_cols=218 Identities=16% Similarity=0.182 Sum_probs=168.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHcCC-CCCCCCChHHHHhhhcCCCEEE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-------IEVAVVDISVS-----RINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF 68 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-------~~V~~~d~~~~-----~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~ 68 (362)
|||+|||.|.||+++|..|+++ | |+|.+|.++++ .++.+++.+ ++.|.|+.. +..++.+
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n--~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~------Lp~ni~~ 83 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN--TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIK------LPDNIVA 83 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCc------CCCceEE
Confidence 7999999999999999999998 6 89999999986 488888654 555667654 3567999
Q ss_pred ecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh--hcCCCCEEEEeeC-CccccH--HHHHHHHHh
Q 017997 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD--VSKSDKIVVEKST-VPVKTA--EAIEKILTH 143 (362)
Q Consensus 69 t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~--~l~~~~iVv~~ST-v~~gt~--~~l~~~l~~ 143 (362)
++|.+++++++|+|+++||+ ..+.++++++.+ +++++.+|+..+. +.+.+. ..+.+.+++
T Consensus 84 tsdl~eav~~aDiIvlAVPs---------------q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e 148 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPH---------------QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE 148 (365)
T ss_pred ecCHHHHHhcCCEEEEEcCh---------------HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH
Confidence 99999999999999999985 257888999988 7777777766665 665553 445666655
Q ss_pred ccCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEE-eCChhHHHHHH------
Q 017997 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRIL-TTNLWSAELSK------ 216 (362)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ae~~K------ 216 (362)
.. +..+.++++|.+..+-.. ..|..+++++.+ ++..+.++++|++-. .+++ ..|+...|+..
T Consensus 149 ~l-~~~~~~LsGPs~A~Eva~----~~pt~~vias~~----~~~a~~~~~lf~~~~--frvy~s~Dv~GvEl~galKNvi 217 (365)
T PTZ00345 149 EL-GIPCCALSGANVANDVAR----EEFSEATIGCED----KDDALIWQRLFDRPY--FKINCVPDVIGVEVCGALKNII 217 (365)
T ss_pred Hh-CCCeEEEECCCHHHHHHc----CCCcEEEEEeCC----HHHHHHHHHHhCCCc--EEEEEcCCcccchhhHHHHHHH
Confidence 43 235678899988876432 567778888774 788899999998632 3444 46876655543
Q ss_pred -----------HHHhHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHhcC
Q 017997 217 -----------LAANAFLAQRISSVNAMSALCEATG--ANVSQVAFAVGT 253 (362)
Q Consensus 217 -----------l~~N~~~~~~ia~~nE~~~l~~~~g--~d~~~v~~~~~~ 253 (362)
+..|+..++....++||.+|++.+| .++++++.+.|.
T Consensus 218 AIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~ 267 (365)
T PTZ00345 218 ALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGL 267 (365)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchH
Confidence 4477888899999999999999997 489999987775
No 35
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.82 E-value=1.3e-18 Score=166.27 Aligned_cols=264 Identities=18% Similarity=0.196 Sum_probs=167.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-ChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-GLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~-~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|.||+++|..|+++ ||+|++||+++ ..+.+++....+..+ +.+.. ...+++.++++.+ ++.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA--GADVTLIGRAR-IGDELRAHGLTLTDYRGRDVR---VPPSAIAFSTDPA-ALATA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHH-HHHHHHhcCceeecCCCccee---cccceeEeccChh-hccCC
Confidence 58999999999999999999999 99999999975 357777644333221 11110 1123466677774 58899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|||++. +.++++.+.+.++++++|+.. +...+..+.+.+.+.+... ..-.+..+....
T Consensus 75 D~vil~vk~~~---------------~~~~~~~l~~~~~~~~iii~~-~nG~~~~~~l~~~~~~~~~-~~g~~~~~~~~~ 137 (341)
T PRK08229 75 DLVLVTVKSAA---------------TADAAAALAGHARPGAVVVSF-QNGVRNADVLRAALPGATV-LAGMVPFNVISR 137 (341)
T ss_pred CEEEEEecCcc---------------hHHHHHHHHhhCCCCCEEEEe-CCCCCcHHHHHHhCCCCcE-EEEEEEEEEEec
Confidence 99999998642 356788888888888876643 4556666666666543210 000001111233
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHH-------------
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQR------------- 226 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~------------- 226 (362)
.||...+. . ..++.++.. +..+.+.++|+..+. ...+..|+...+|.|++.|++..+.
T Consensus 138 ~pg~~~~~-~-~g~l~~~~~------~~~~~~~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~ 208 (341)
T PRK08229 138 GPGAFHQG-T-SGALAIEAS------PALRPFAAAFARAGL-PLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQ 208 (341)
T ss_pred CCceEEec-C-CCceEecCC------chHHHHHHHHHhcCC-CceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcC
Confidence 44544321 1 123555522 346788899987652 3456689999999999999754444
Q ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHhcCC--------CC----CCCCCccCCCCCcccChhHhHH---------
Q 017997 227 -------ISSVNAMSALCEATGANVSQVAFAVGTD--------SR----IGPKFLNASVGFGGSCFQKDIL--------- 278 (362)
Q Consensus 227 -------ia~~nE~~~l~~~~g~d~~~v~~~~~~~--------~~----i~~~~~~~g~g~gg~cl~kD~~--------- 278 (362)
...+.|...++++.|+++..+.++.... .. +........+. ..+.+.+|..
T Consensus 209 ~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sm~~D~~~~r~tEi~~ 287 (341)
T PRK08229 209 RSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL-ARSSMSDDLAAGRATEIDW 287 (341)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc-cCchHHHHHHcCCcchHHH
Confidence 4789999999999999865433221110 00 00001110111 1256999999
Q ss_pred ---HHHHHHHhCCCchhHHHHHHHH
Q 017997 279 ---NLVYICECNGLPEVAEYWKQVI 300 (362)
Q Consensus 279 ---~l~~~a~~~g~~~~~~~~~~~~ 300 (362)
++++.|+++|++ .|..+.+.
T Consensus 288 i~G~i~~~a~~~gv~--~P~~~~~~ 310 (341)
T PRK08229 288 INGEIVRLAGRLGAP--APVNARLC 310 (341)
T ss_pred HhhHHHHHHHHcCCC--CcHHHHHH
Confidence 799999999998 66555443
No 36
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.82 E-value=1.9e-18 Score=169.40 Aligned_cols=196 Identities=14% Similarity=0.175 Sum_probs=162.1
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc---CCcEEEEeccC
Q 017997 12 VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS---EADIVFVSVNT 88 (362)
Q Consensus 12 ~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~---~aDvVii~vpt 88 (362)
||.+||.+|+++ ||+|++|||++++++.+.+..-. ..++..+.+++++++ .+|+||+|||.
T Consensus 1 MG~~mA~nL~~~--G~~V~v~nrt~~~~~~l~~~~g~--------------~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~ 64 (459)
T PRK09287 1 MGKNLALNIASH--GYTVAVYNRTPEKTDEFLAEEGK--------------GKKIVPAYTLEEFVASLEKPRKILLMVKA 64 (459)
T ss_pred CcHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhCC--------------CCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence 899999999999 99999999999999988752000 013667788888766 48999999986
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccccCcccccc
Q 017997 89 PTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDL 168 (362)
Q Consensus 89 p~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~g~a~~~~ 168 (362)
+ ..+.++++++.+.+.++++||+.||..+..+++..+.+++. | +.++.+|...++..+.++
T Consensus 65 g--------------~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~--G--i~fvdapVSGG~~gA~~G- 125 (459)
T PRK09287 65 G--------------APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEK--G--IHFIGMGVSGGEEGALHG- 125 (459)
T ss_pred c--------------hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhc--C--CeEEecCCCCCHHHHhcC-
Confidence 4 25688889999999999999999998888888777777664 2 345788877776665433
Q ss_pred CCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCc-------EEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH-Hh
Q 017997 169 FNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDR-------ILTTNLWSAELSKLAANAFLAQRISSVNAMSALCE-AT 240 (362)
Q Consensus 169 ~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~-~~ 240 (362)
+.+++||+ +++.++++++|+.+.. .. .++++.+.+..+|+++|.+.+..+..+.|...+++ .+
T Consensus 126 ---~siM~GG~-----~~a~~~~~piL~~ia~-~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~ 196 (459)
T PRK09287 126 ---PSIMPGGQ-----KEAYELVAPILEKIAA-KVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL 196 (459)
T ss_pred ---CEEEEeCC-----HHHHHHHHHHHHHHhh-hhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36899997 7899999999999873 22 56788899999999999999999999999999999 49
Q ss_pred CCCHHHHHHHh
Q 017997 241 GANVSQVAFAV 251 (362)
Q Consensus 241 g~d~~~v~~~~ 251 (362)
|+|++++.+++
T Consensus 197 Gl~~~~l~~v~ 207 (459)
T PRK09287 197 GLSAEEIADVF 207 (459)
T ss_pred CCCHHHHHHHH
Confidence 99999999888
No 37
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.81 E-value=3.8e-18 Score=161.66 Aligned_cols=261 Identities=12% Similarity=0.034 Sum_probs=182.3
Q ss_pred ceEEEEcCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHH-----HHHcCCCCCCCCChHH
Q 017997 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRIN-----AWNSDQLPIYEPGLDG 56 (362)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~la~~~~G~~V~~~d~~~~~~~-----~l~~~~~~~~e~~l~~ 56 (362)
|||+|.|+|+ -|.+||.+|+++ ||+|++||++++.++ .+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a--G~~V~v~Dr~~~~l~~~~~~~l~~------------ 66 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA--GHDVVLAEPNRSILSEELWKKVED------------ 66 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC--CCeEEEEECCHHHhhHHHHHHHHH------------
Confidence 7999999994 588999999999 999999999987542 2222
Q ss_pred HHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH-H
Q 017997 57 VVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA-E 135 (362)
Q Consensus 57 ~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~-~ 135 (362)
.+++++++..+++++||+||+|+|++. .++++++.+.+.++++++|++.||+++.+. +
T Consensus 67 -------~Gi~~asd~~eaa~~ADvVIlaVP~~~--------------~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~ 125 (342)
T PRK12557 67 -------AGVKVVSDDAEAAKHGEIHILFTPFGK--------------KTVEIAKNILPHLPENAVICNTCTVSPVVLYY 125 (342)
T ss_pred -------CCCEEeCCHHHHHhCCCEEEEECCCcH--------------HHHHHHHHHHhhCCCCCEEEEecCCCHHHHHH
Confidence 236677788888899999999998531 357788899999999999999999988877 6
Q ss_pred HHHHHHHhccCCCceEEeeCCcccccCccccccCCCCeEEEecCC---CcchHHHHHHHHHHHhccCCCCcEEeCChhHH
Q 017997 136 AIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE---TPEGQKAVKALKDVYAHWVPEDRILTTNLWSA 212 (362)
Q Consensus 136 ~l~~~l~~~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 212 (362)
.+.+.+........+ ...+|-.. +|.....+ .++.|+.. ...+++.+++++++|+.++ .++++.+.+.+
T Consensus 126 ~l~~~l~~~~~~~gi-~~~~p~~v-~Gae~g~l----~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G--~~v~~~~~g~~ 197 (342)
T PRK12557 126 SLEGELRTKRKDVGI-SSMHPAAV-PGTPQHGH----YVIAGKTTNGTELATEEQIEKCVELAESIG--KEPYVVPADVV 197 (342)
T ss_pred HHHHHhcccccccCe-eecCCccc-cccccchh----eEEeCCCcccccCCCHHHHHHHHHHHHHcC--CEEEEeCHHHH
Confidence 666666432111111 11233221 12111111 24444311 1123778899999999987 35666778999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchh
Q 017997 213 ELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292 (362)
Q Consensus 213 e~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~ 292 (362)
..+|++.|.+.++.++...|...++++.|.++.++.+-+....-.+...+--.-|+.|--=.-||..|+..|+...+-+.
T Consensus 198 ~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (342)
T PRK12557 198 SAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVETSGVDGLLKALNPELLLRSASSMHLLEK 277 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcchh
Confidence 99999999999999999999999999999999998887664321111111112244433223488999999998776555
Q ss_pred HHHHHHHHHHHHH
Q 017997 293 AEYWKQVIKINDY 305 (362)
Q Consensus 293 ~~~~~~~~~~N~~ 305 (362)
.+.+.+++++=+.
T Consensus 278 ~~~~~~~~~~~~~ 290 (342)
T PRK12557 278 QKDLDAALEILEN 290 (342)
T ss_pred hhhHHHHHHHHHH
Confidence 6677776665443
No 38
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.81 E-value=1.4e-17 Score=158.09 Aligned_cols=216 Identities=16% Similarity=0.221 Sum_probs=146.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC-CCCChHHHHhhhcCCCEEEecCHHhhh-cCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPI-YEPGLDGVVKQCRGKNLFFSTDVEKHV-SEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~-~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~a 79 (362)
|||+|||+|.||+.+|..|+++ ||+|++|+++++.++.+++.+... +.++.. ...++++++++.+++ .++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK--KISVNLWGRNHTTFESINTKRKNLKYLPTCH------LPDNISVKSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCcccCCCCc------CCCCeEEeCCHHHHHhCCC
Confidence 7999999999999999999999 999999999999999998753221 122211 123577888888766 589
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hcCCCCEEEE-eeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~-~l~~~~iVv~-~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
|+||+|||+. ++.++++++.+ ++.+++.|+. ...+...+.....+.+.+..+...+.+..+|.
T Consensus 73 Dliiiavks~---------------~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~ 137 (326)
T PRK14620 73 TCIILAVPTQ---------------QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPS 137 (326)
T ss_pred CEEEEEeCHH---------------HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCc
Confidence 9999999842 46888999988 8877765543 33343332211222233222112334456776
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH---------------
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF--------------- 222 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~--------------- 222 (362)
+..+... ..+..+++++.+ .+..+.+.++|+.-.- ......|+...+|.|++-|.+
T Consensus 138 ~a~~~~~----~~~~~~~~~~~~----~~~~~~l~~~l~~~~~-~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n 208 (326)
T PRK14620 138 FAKEIAE----KLPCSIVLAGQN----ETLGSSLISKLSNENL-KIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNN 208 (326)
T ss_pred HHHHHHc----CCCcEEEEecCC----HHHHHHHHHHHCCCCe-EEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCch
Confidence 5443221 234456666653 5566778888876431 233457999999999987763
Q ss_pred --HHHHHHHHHHHHHHHHHhCC--CHHHHHH
Q 017997 223 --LAQRISSVNAMSALCEATGA--NVSQVAF 249 (362)
Q Consensus 223 --~~~~ia~~nE~~~l~~~~g~--d~~~v~~ 249 (362)
.++....++|+..+++.+|. +++++..
T Consensus 209 ~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~g 239 (326)
T PRK14620 209 AHAAVITKGMNEIKTLYSAKNGSIDLNTLIG 239 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcchhhc
Confidence 45567889999999999987 7888854
No 39
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.79 E-value=1.8e-18 Score=161.51 Aligned_cols=211 Identities=18% Similarity=0.273 Sum_probs=146.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChH-----HHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLD-----GVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~-----~~~~~~~~~~l~~t~d~~~a 75 (362)
+.||+|||+|.||.++|..|+++ ||+|++||++++.++.+++...+..+++.+ +.-.+....+++++++++++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 57899999999999999999999 999999999999999876532221111110 00000012457888999888
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (362)
+++||+||+|+|++.+ ....++.++.+.+++++++ +++||+++..... .+..... |.+|
T Consensus 79 ~~~aD~Vi~avpe~~~-------------~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~-- 140 (288)
T PRK09260 79 VADADLVIEAVPEKLE-------------LKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHF-- 140 (288)
T ss_pred hcCCCEEEEeccCCHH-------------HHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEec--
Confidence 9999999999986421 2256677888889999876 7899998865332 2222111 2232
Q ss_pred eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 153 ~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
. +|....+ . ..++++..+ +++++++++++++.++ +.++++.+ ...++.|.+ ..+++||
T Consensus 141 ~-~Pv~~~~---------L-ve~v~g~~t--~~~~~~~~~~~l~~lg-~~~v~v~d-----~~Gf~~nRl---~~~~~~e 198 (288)
T PRK09260 141 F-NPVHKMK---------L-VELIRGLET--SDETVQVAKEVAEQMG-KETVVVNE-----FPGFVTSRI---SALVGNE 198 (288)
T ss_pred C-CCcccCc---------e-EEEeCCCCC--CHHHHHHHHHHHHHcC-CeEEEecC-----cccHHHHHH---HHHHHHH
Confidence 2 5654321 1 245666433 4889999999999987 34565543 345677774 4589999
Q ss_pred HHHHHHHhCCCHHHHHHHhcC
Q 017997 233 MSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~~~ 253 (362)
...+.++--.+++++..++-.
T Consensus 199 a~~~~~~gv~~~~~iD~~~~~ 219 (288)
T PRK09260 199 AFYMLQEGVATAEDIDKAIRL 219 (288)
T ss_pred HHHHHHcCCCCHHHHHHHHHh
Confidence 999998766889999998854
No 40
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.78 E-value=1.5e-17 Score=156.07 Aligned_cols=210 Identities=20% Similarity=0.189 Sum_probs=143.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh-----hhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-----QCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~-----~~~~~~l~~t~d~~~a~ 76 (362)
.||+|||+|.||..+|..|+.+ |++|++||++++.++.+.+... ..++.+.+ ....+++++++++++++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~i~~~~~l~~av 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVA----NAWPALERQGLAPGASPARLRFVATIEACV 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCChhhHHhhceecCCHHHHh
Confidence 6899999999999999999999 9999999999987765433100 00000000 01124688899998889
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC--CCceEEee
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQILS 154 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~ 154 (362)
++||+|+.|+|.. .+++ .+.++++.+.++++++| .+||.+. ....+.+.+....+ +.+| +
T Consensus 82 ~~aDlViEavpE~-----------l~vK--~~lf~~l~~~~~~~aIl-aSnTS~l-~~s~la~~~~~p~R~~g~Hf---f 143 (321)
T PRK07066 82 ADADFIQESAPER-----------EALK--LELHERISRAAKPDAII-ASSTSGL-LPTDFYARATHPERCVVGHP---F 143 (321)
T ss_pred cCCCEEEECCcCC-----------HHHH--HHHHHHHHHhCCCCeEE-EECCCcc-CHHHHHHhcCCcccEEEEec---C
Confidence 9999999999863 3444 67789999999998844 4555422 22334333322211 2222 3
Q ss_pred CCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHH
Q 017997 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (362)
Q Consensus 155 ~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (362)
+|.+..| ...|+ .+..| ++++++.+.++++.++ +.++.+. .|...++.|. +..++++|..
T Consensus 144 nP~~~~p---------LVEVv-~g~~T--~~e~~~~~~~f~~~lG-k~pV~v~----kd~pGFi~NR---l~~a~~~EA~ 203 (321)
T PRK07066 144 NPVYLLP---------LVEVL-GGERT--APEAVDAAMGIYRALG-MRPLHVR----KEVPGFIADR---LLEALWREAL 203 (321)
T ss_pred CccccCc---------eEEEe-CCCCC--CHHHHHHHHHHHHHcC-CEeEecC----CCCccHHHHH---HHHHHHHHHH
Confidence 5554433 11354 44444 6899999999999987 3566652 1234578888 5679999999
Q ss_pred HHHHHhCCCHHHHHHHhcCCC
Q 017997 235 ALCEATGANVSQVAFAVGTDS 255 (362)
Q Consensus 235 ~l~~~~g~d~~~v~~~~~~~~ 255 (362)
.+.++..++++++..++...+
T Consensus 204 ~lv~eGvas~edID~a~~~g~ 224 (321)
T PRK07066 204 HLVNEGVATTGEIDDAIRFGA 224 (321)
T ss_pred HHHHhCCCCHHHHHHHHHhCC
Confidence 999998899999999976544
No 41
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.5e-16 Score=138.46 Aligned_cols=250 Identities=17% Similarity=0.177 Sum_probs=169.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh---hcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (362)
|+|+.||||.||..+..+|.+. ||+|++||+|++.++.+.... .+.++++.+. +..
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~--ghdvV~yD~n~~av~~~~~~g-------------------a~~a~sl~el~~~L~~ 59 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG--GHDVVGYDVNQTAVEELKDEG-------------------ATGAASLDELVAKLSA 59 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC--CCeEEEEcCCHHHHHHHHhcC-------------------CccccCHHHHHHhcCC
Confidence 7999999999999999999999 999999999999999987632 2222333322 456
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
.-+|.++||... .+.++++++++.|.++.+||+-....-..+.+-.+.+++. |.+| +.+--.
T Consensus 60 pr~vWlMvPag~--------------it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~k--gi~f--lD~GTS 121 (300)
T COG1023 60 PRIVWLMVPAGD--------------ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEK--GIHF--LDVGTS 121 (300)
T ss_pred CcEEEEEccCCC--------------chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhc--CCeE--EeccCC
Confidence 689999998431 3478999999999999999985442222222233344443 3332 332211
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCC-CcE-EeCChhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPE-DRI-LTTNLWSAELSKLAANAFLAQRISSVNAMSAL 236 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l 236 (362)
.+. .+....-.++|||+ +++.+++.++|+.+.++ .-+ +.+..++..++|+++|..-.-.++.+.|-..+
T Consensus 122 GG~----~G~~~G~~lMiGG~-----~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfel 192 (300)
T COG1023 122 GGV----WGAERGYCLMIGGD-----EEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFEL 192 (300)
T ss_pred CCc----hhhhcCceEEecCc-----HHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHH
Confidence 111 11222235789997 78999999999998652 234 45577899999999999999999999999999
Q ss_pred HHH--hCCCHHHHHHHhcCCCCCCCCCc---------cCCCC-CcccChh-HhHHHHHHHHHhCCCchhHHHHHHHHH
Q 017997 237 CEA--TGANVSQVAFAVGTDSRIGPKFL---------NASVG-FGGSCFQ-KDILNLVYICECNGLPEVAEYWKQVIK 301 (362)
Q Consensus 237 ~~~--~g~d~~~v~~~~~~~~~i~~~~~---------~~g~g-~gg~cl~-kD~~~l~~~a~~~g~~~~~~~~~~~~~ 301 (362)
.++ +++|.++|.+..+..+.|++..+ .|... ++|+--. -.=+.-+..|-+.|+| +|++..++.
T Consensus 193 L~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~g~v~dSGEGrWTv~~aldlgvp--aPVia~al~ 268 (300)
T COG1023 193 LKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQISGRVSDSGEGRWTVEEALDLGVP--APVIALALM 268 (300)
T ss_pred HHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhcCeeccCCCceeehHHHHhcCCC--chHHHHHHH
Confidence 998 67899999999998775543211 12111 1111000 0011223455678899 788877663
No 42
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.77 E-value=2.7e-17 Score=164.23 Aligned_cols=211 Identities=18% Similarity=0.204 Sum_probs=141.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-------CCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-------QLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~-------~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
+|||+|||+|.||.+||..|+++ ||+|++||+++++++.+.+. ...+....+ ...++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~g~i~~~~~~~ 75 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA--GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPL------PPEGRLTFCASLA 75 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchh------hhhhceEeeCCHH
Confidence 47999999999999999999999 99999999999998765421 000000000 0124578899998
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEe
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~ 153 (362)
+++++||+|++|+|+.. ++ ....+.++.+.++++. |+.+||..+..+ .+.+.+... ...++
T Consensus 76 ea~~~aD~Vieavpe~~-----------~v--k~~l~~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~----~r~~~ 136 (495)
T PRK07531 76 EAVAGADWIQESVPERL-----------DL--KRRVLAEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHP----ERLFV 136 (495)
T ss_pred HHhcCCCEEEEcCcCCH-----------HH--HHHHHHHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCc----ceEEE
Confidence 88999999999998642 22 2456677888877775 456677655433 444434332 12455
Q ss_pred eCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHH
Q 017997 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (362)
Q Consensus 154 ~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (362)
.+|-. |... ... -.++++..+ +++.+++++++|+.++. .+++... +...++.|.+ ..++++|+
T Consensus 137 ~hP~n--P~~~----~~L-vevv~g~~t--~~e~~~~~~~~~~~lG~-~~v~~~k----~~~gfi~nrl---~~a~~~EA 199 (495)
T PRK07531 137 AHPYN--PVYL----LPL-VELVGGGKT--SPETIRRAKEILREIGM-KPVHIAK----EIDAFVGDRL---LEALWREA 199 (495)
T ss_pred EecCC--Cccc----Cce-EEEcCCCCC--CHHHHHHHHHHHHHcCC-EEEeecC----CCcchhHHHH---HHHHHHHH
Confidence 55522 1111 111 245676544 58899999999999973 4554431 3333444442 44567999
Q ss_pred HHHHHHhCCCHHHHHHHhcCCC
Q 017997 234 SALCEATGANVSQVAFAVGTDS 255 (362)
Q Consensus 234 ~~l~~~~g~d~~~v~~~~~~~~ 255 (362)
..++++.|+|++++.+++...+
T Consensus 200 ~~L~~~g~~s~~~id~~~~~g~ 221 (495)
T PRK07531 200 LWLVKDGIATTEEIDDVIRYSF 221 (495)
T ss_pred HHHHHcCCCCHHHHHHHHhhcc
Confidence 9999999999999999998764
No 43
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.76 E-value=1.8e-16 Score=149.18 Aligned_cols=212 Identities=19% Similarity=0.195 Sum_probs=142.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||..+|..|+++ ||+|++|++ +++++.+++.+..+.++..+.. -....+++.+++...+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~ 71 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIRSDHGDAV------VPGPVITDPEELTGPFDL 71 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEEeCCCeEE------ecceeecCHHHccCCCCE
Confidence 7999999999999999999999 999999999 8899988875544433221110 012345666665689999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc-cc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF-LA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-~~ 160 (362)
||+|+|++ ++.++++.+.+.++++++|+.. +...+..+.+.+.+.+.. .-..+.+.+.+ ..
T Consensus 72 vilavk~~---------------~~~~~~~~l~~~~~~~~~ii~~-~nG~~~~~~l~~~~~~~~--v~~g~~~~~~~~~~ 133 (305)
T PRK12921 72 VILAVKAY---------------QLDAAIPDLKPLVGEDTVIIPL-QNGIGQLEQLEPYFGRER--VLGGVVFISAQLNG 133 (305)
T ss_pred EEEEeccc---------------CHHHHHHHHHhhcCCCCEEEEe-eCCCChHHHHHHhCCccc--EEEEEEEEEEEECC
Confidence 99999864 2477888898888888776543 234455566665554321 01123333433 34
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHH------------------
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAF------------------ 222 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~------------------ 222 (362)
+|...+. .+.++++|..+.. ..+..+.+.++|...+. ......|+....|.|++.|+.
T Consensus 134 ~g~v~~~--~~~~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~ 209 (305)
T PRK12921 134 DGVVVQR--ADHRLTFGEIPGQ-RSERTRAVRDALAGARL-EVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSR 209 (305)
T ss_pred CeEEEEc--CCCcEEEcCCCCC-cCHHHHHHHHHHHhCCC-CceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhC
Confidence 4554333 4456778864322 23456677777776542 234567999999999998863
Q ss_pred ---HHHHHHHHHHHHHHHHHhCCCH
Q 017997 223 ---LAQRISSVNAMSALCEATGANV 244 (362)
Q Consensus 223 ---~~~~ia~~nE~~~l~~~~g~d~ 244 (362)
+.+..+.++|+..++++.|+++
T Consensus 210 ~~~~~l~~~~~~E~~~v~~a~G~~~ 234 (305)
T PRK12921 210 PGGRDLARALLRECLAVARAEGAPL 234 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 2456688999999999999763
No 44
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.75 E-value=7.3e-17 Score=160.96 Aligned_cols=201 Identities=18% Similarity=0.216 Sum_probs=143.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc------------CCCCCCCCChHHHHhhhcCCCEEEe
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS------------DQLPIYEPGLDGVVKQCRGKNLFFS 69 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~------------~~~~~~e~~l~~~~~~~~~~~l~~t 69 (362)
.+|+|||+|.||..||.+|+.+ ||+|++||++++.++...+ |.. .+...+. ...+++.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~--~~~~~~~-----~~~~i~~~ 78 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGKL--TAEQADA-----ALARLRPV 78 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHH-----HHhCeEEe
Confidence 4799999999999999999999 9999999999999887421 211 1111111 12468899
Q ss_pred cCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--
Q 017997 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK-- 146 (362)
Q Consensus 70 ~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~-- 146 (362)
+++++ +++||+||.|||... +++ ..++.++...+++++++ +++||+++. .+...+.....
T Consensus 79 ~~~~~-~~~aDlViEav~E~~-----------~vK--~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~ 141 (507)
T PRK08268 79 EALAD-LADCDLVVEAIVERL-----------DVK--QALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVA 141 (507)
T ss_pred CCHHH-hCCCCEEEEcCcccH-----------HHH--HHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEE
Confidence 99976 789999999998643 233 45567788888899988 689999985 23333322111
Q ss_pred CCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCC-hhHHHHHHHHHhHHHHH
Q 017997 147 GIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN-LWSAELSKLAANAFLAQ 225 (362)
Q Consensus 147 g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ae~~Kl~~N~~~~~ 225 (362)
|.+| ++|....+ . -.|+++..+ ++++++++.++++.++ +.++++.+ ++ ++.|.+.
T Consensus 142 G~hf---f~Pa~v~~---------L-vEvv~g~~T--s~~~~~~~~~l~~~lg-k~pv~v~d~pG------fi~Nrll-- 197 (507)
T PRK08268 142 GLHF---FNPVPLMK---------L-VEVVSGLAT--DPAVADALYALARAWG-KTPVRAKDTPG------FIVNRAA-- 197 (507)
T ss_pred EEee---cCCcccCe---------e-EEEeCCCCC--CHHHHHHHHHHHHHcC-CceEEecCCCC------hHHHHHH--
Confidence 3333 34433321 1 235666444 5899999999999987 46777765 34 5777654
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 226 RISSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 226 ~ia~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
.++++|...++++.++|++++.+++..
T Consensus 198 -~~~~~Ea~~l~~~g~~~~~~iD~al~~ 224 (507)
T PRK08268 198 -RPYYTEALRVLEEGVADPATIDAILRE 224 (507)
T ss_pred -HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 469999999999999999999999854
No 45
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.74 E-value=7.3e-16 Score=142.93 Aligned_cols=201 Identities=14% Similarity=0.129 Sum_probs=130.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.++|..|.++ |+ +|++||+++++++.+.+. +....+++++++ .++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~--g~~~~v~~~d~~~~~~~~~~~~------------------g~~~~~~~~~~~-~~a 59 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK--GLISKVYGYDHNELHLKKALEL------------------GLVDEIVSFEEL-KKC 59 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc--CCCCEEEEEcCCHHHHHHHHHC------------------CCCcccCCHHHH-hcC
Confidence 6999999999999999999998 65 899999999988876542 111123455664 459
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc--
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE-- 157 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe-- 157 (362)
|+||+|||.. .+.+.++++.+ ++++++|+..+++... +.+.+.+.. +.. ++..+|-
T Consensus 60 D~Vilavp~~---------------~~~~~~~~l~~-l~~~~iv~d~gs~k~~----i~~~~~~~~-~~~-~v~~hPmaG 117 (275)
T PRK08507 60 DVIFLAIPVD---------------AIIEILPKLLD-IKENTTIIDLGSTKAK----IIESVPKHI-RKN-FIAAHPMAG 117 (275)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhc-cCCCCEEEECccchHH----HHHHHHHhc-CCC-EEecCCcCc
Confidence 9999999842 35677788888 8889988875554333 333333321 112 4566784
Q ss_pred --ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 158 --FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 158 --~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
+.+|..+..+++....+++... ...+++..+.++++|+.++. .+++....+..++++++++.-..+..++++-+.
T Consensus 118 ~e~~Gp~~a~~~l~~g~~~il~~~-~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~- 194 (275)
T PRK08507 118 TENSGPKAAIKGLYEGKVVVLCDV-EKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHAAYISHLPHIISFALANTVL- 194 (275)
T ss_pred CchhhHHhccHHHhCCCeEEEecC-CCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Confidence 3445555544444333333322 22246788999999999872 344445556788999999998755555544441
Q ss_pred HHHHhCCCHHHHHHHhc
Q 017997 236 LCEATGANVSQVAFAVG 252 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~ 252 (362)
.+.|..++....+
T Consensus 195 ----~~~~~~~~~~~~~ 207 (275)
T PRK08507 195 ----KEEDERNIFDLAG 207 (275)
T ss_pred ----hcCChHHHHhhcc
Confidence 2455555555444
No 46
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.74 E-value=1.5e-16 Score=158.23 Aligned_cols=210 Identities=18% Similarity=0.220 Sum_probs=143.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----CCCCCCC-hHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----LPIYEPG-LDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a 75 (362)
+.||+|||+|.||..||.+|+++ ||+|++||++++.++...+.. ....+.+ +...-.+....+++.++++++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~- 81 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA- 81 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-
Confidence 46899999999999999999999 999999999999987542210 0000001 000000011246888999976
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE-EeeCCccccHHHHHHHHHhccC--CCceEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv-~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (362)
+++||+||.|||... +++ +.++.++.+.+++++++. ++||+++. .+...+..... |.+|
T Consensus 82 l~~aDlVIEav~E~~-----------~vK--~~vf~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HF-- 143 (503)
T TIGR02279 82 LADAGLVIEAIVENL-----------EVK--KALFAQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHF-- 143 (503)
T ss_pred hCCCCEEEEcCcCcH-----------HHH--HHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEec--
Confidence 789999999998642 223 556778888888888773 67777764 23333332211 4443
Q ss_pred eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 153 ~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
++|....+ . -.|+++..+ ++++++++.++++.++ +.++++.+... ++.|.+. .++++|
T Consensus 144 -f~Papv~~---------L-vEvv~g~~T--s~e~~~~~~~l~~~lg-k~pv~v~d~pG-----fi~Nrl~---~~~~~E 201 (503)
T TIGR02279 144 -FNPAPVMA---------L-VEVVSGLAT--AAEVAEQLYETALAWG-KQPVHCHSTPG-----FIVNRVA---RPYYAE 201 (503)
T ss_pred -cCccccCc---------e-EEEeCCCCC--CHHHHHHHHHHHHHcC-CeeeEeCCCCC-----cHHHHHH---HHHHHH
Confidence 35443332 1 235676544 5899999999999997 45676665322 3666644 479999
Q ss_pred HHHHHHHhCCCHHHHHHHhcC
Q 017997 233 MSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~~~ 253 (362)
...+.++.+++++++.+++..
T Consensus 202 A~~l~e~g~a~~~~ID~al~~ 222 (503)
T TIGR02279 202 ALRALEEQVAAPAVLDAALRD 222 (503)
T ss_pred HHHHHHcCCCCHHHHHHHHHh
Confidence 999999999999999999865
No 47
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.73 E-value=5.5e-16 Score=143.99 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=128.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE-EEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~aD 80 (362)
|||+|||+|.||.++|..|.++ |++|++||++++..+.+.+.. .+ ..+++.+ +++++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g------------------~~~~~~~~~~-~~~~aD 59 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERG------------------LVDEASTDLS-LLKDCD 59 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC------------------CcccccCCHh-HhcCCC
Confidence 7999999999999999999998 999999999999888776421 11 2334443 588999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC----
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP---- 156 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P---- 156 (362)
+||+|+|.+ .+.+.++++.++++++++|++.+++.+...+.+.+... . ++..+|
T Consensus 60 lVilavp~~---------------~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~~~------~-~v~~HPm~G~ 117 (279)
T PRK07417 60 LVILALPIG---------------LLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKLHP------R-FVGSHPMAGT 117 (279)
T ss_pred EEEEcCCHH---------------HHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHhhC------C-ceeeCCcCCC
Confidence 999998842 34667888988888899998888776655444332211 1 344455
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAM 233 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~ 233 (362)
+..+...+..+++....+++- +....+++..+.++++++.++. .+++....+..+.++++.|....+..++++..
T Consensus 118 ~~~g~~~a~~~lf~g~~~~l~-p~~~~~~~~~~~v~~l~~~lG~-~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 118 AESGVEAGQRGLFKNRPWVLT-PTENTDLNALAIVEELAVSLGS-KIYTADPEEHDRAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred CcchHHHhhHHHhCCCcEEEc-cCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 333333444444433333332 2222357889999999999873 33445556788999999998766666665554
No 48
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.73 E-value=2e-17 Score=140.46 Aligned_cols=151 Identities=25% Similarity=0.351 Sum_probs=110.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
||+|+|+|.||+++|..|+++ ||+|++|.++++.++.+++.+ .+.+.++.. ...++.+++|++++++++|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~------l~~~i~~t~dl~~a~~~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIK------LPENIKATTDLEEALEDADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSB------EETTEEEESSHHHHHTT-SE
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcc------cCcccccccCHHHHhCcccE
Confidence 799999999999999999999 999999999999999998744 333444421 23468999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
|+++||+. .+++.++++.++++++++++..+. +.+++...+.+.+++..+...+.++++|.+..
T Consensus 73 IiiavPs~---------------~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~ 137 (157)
T PF01210_consen 73 IIIAVPSQ---------------AHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAE 137 (157)
T ss_dssp EEE-S-GG---------------GHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HH
T ss_pred EEecccHH---------------HHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHH
Confidence 99999853 368899999999999998887665 55666666666666654323378899998887
Q ss_pred cCccccccCCCCeEEEecCC
Q 017997 161 EGTAIQDLFNPDRVLIGGRE 180 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~ 180 (362)
+-.. ..|..+++++.+
T Consensus 138 Ei~~----~~pt~~~~as~~ 153 (157)
T PF01210_consen 138 EIAE----GKPTAVVIASKN 153 (157)
T ss_dssp HHHT----T--EEEEEEESS
T ss_pred HHHc----CCCeEEEEEecc
Confidence 6432 466677888774
No 49
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=7e-16 Score=144.30 Aligned_cols=204 Identities=19% Similarity=0.214 Sum_probs=135.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHhhhcCCCEEEecC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
+||+|||+|.||.++|..|+++ |++|++||+++++++.+.+.. -.+.+..... ...+++++++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~~ 77 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAA-----ALARISTATD 77 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhCeEeeCC
Confidence 5899999999999999999999 999999999999887743210 0010101111 1245788888
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE-EeeCCccccHHHHHHHHHhccC--CC
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GI 148 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv-~~STv~~gt~~~l~~~l~~~~~--g~ 148 (362)
+++ +++||+||+|+|+.. ......++++.+.++++++++ ++||+++. .+.+.+..... |.
T Consensus 78 ~~~-~~~aD~Vieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~ 140 (292)
T PRK07530 78 LED-LADCDLVIEAATEDE-------------TVKRKIFAQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGI 140 (292)
T ss_pred HHH-hcCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEe
Confidence 865 899999999998642 123566788999999998875 67777653 34433322111 22
Q ss_pred ceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHH
Q 017997 149 KFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRIS 228 (362)
Q Consensus 149 ~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia 228 (362)
+| +.|....++. .++.| ..+ +++.++.+.++++.++. .+++..+.. .+++++. ..+
T Consensus 141 h~---~~p~~~~~~v---------ei~~g-~~t--~~~~~~~~~~~~~~~gk-~~v~~~d~p----g~i~nRl----~~~ 196 (292)
T PRK07530 141 HF---MNPVPVMKLV---------ELIRG-IAT--DEATFEAAKEFVTKLGK-TITVAEDFP----AFIVNRI----LLP 196 (292)
T ss_pred ec---cCCcccCceE---------EEeCC-CCC--CHHHHHHHHHHHHHcCC-eEEEecCcC----ChHHHHH----HHH
Confidence 21 2343333221 24333 322 58899999999999873 566555533 4444444 357
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 229 SVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 229 ~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
++||...+.++.-.+++++..++..
T Consensus 197 ~~~ea~~~~~~g~~~~~~iD~~~~~ 221 (292)
T PRK07530 197 MINEAIYTLYEGVGSVEAIDTAMKL 221 (292)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 8999998888855689999998743
No 50
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=7.2e-16 Score=143.82 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=140.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC---CCCCC--ChHHHH-hhhcCCCEEEecCHHh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL---PIYEP--GLDGVV-KQCRGKNLFFSTDVEK 74 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~---~~~e~--~l~~~~-~~~~~~~l~~t~d~~~ 74 (362)
++||+|||+|.||.++|..|+.+ |++|++||++++.++.+++... +..++ .+..-- .+....++++++|+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 37999999999999999999999 9999999999998887654210 00000 000000 0001256889999998
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccCCCceEEe
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~g~~~~v~ 153 (362)
++++||+||+|+|++. ....+.++++.+.++++++| .++||+++.. +.+.+... .. ++.
T Consensus 81 a~~~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~---~~~~~~~~---~r-~vg 140 (287)
T PRK08293 81 AVKDADLVIEAVPEDP-------------EIKGDFYEELAKVAPEKTIFATNSSTLLPSQ---FAEATGRP---EK-FLA 140 (287)
T ss_pred HhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCCEEEECcccCCHHH---HHhhcCCc---cc-EEE
Confidence 8999999999998642 23477788999999988888 5677776543 22222211 11 233
Q ss_pred eCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-ChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 154 ~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
.+| ..|... .....+ +.+..+ ++++++.+.++++.++ +.++.+. + .-.++.|.+ ..+++||
T Consensus 141 ~Hf--~~p~~~----~~lvev-v~~~~t--~~~~~~~~~~~~~~~G-k~pv~v~~d-----~pgfi~nRi---~~~~~~e 202 (287)
T PRK08293 141 LHF--ANEIWK----NNTAEI-MGHPGT--DPEVFDTVVAFAKAIG-MVPIVLKKE-----QPGYILNSL---LVPFLSA 202 (287)
T ss_pred EcC--CCCCCc----CCeEEE-eCCCCC--CHHHHHHHHHHHHHcC-CeEEEecCC-----CCCHhHHHH---HHHHHHH
Confidence 333 111110 111123 333323 6899999999999987 3455553 3 224566763 5589999
Q ss_pred HHHHHHHhCCCHHHHHHHhcC
Q 017997 233 MSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~~~ 253 (362)
...+.++..++++++..++..
T Consensus 203 a~~l~~~g~a~~~~iD~a~~~ 223 (287)
T PRK08293 203 ALALWAKGVADPETIDKTWMI 223 (287)
T ss_pred HHHHHHcCCCCHHHHHHHHHh
Confidence 999999988999999998754
No 51
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=1e-15 Score=144.47 Aligned_cols=211 Identities=15% Similarity=0.152 Sum_probs=135.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC---CC-CCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL---PI-YEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~---~~-~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|+||+|||+|.||.++|..|+++ |++|++||+++++++.+++... .. .+.+... ...+++++++++++++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIAS----AGMGRIRMEAGLAAAV 77 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHH----HHhhceEEeCCHHHHh
Confidence 46899999999999999999998 9999999999999888765210 00 0000000 0124577888888888
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (362)
++||+||+|||.+. .....++..+.+.++++++|+ ++|..+. ...+.+.+.... . ++..+|
T Consensus 78 ~~aDlVi~av~~~~-------------~~~~~v~~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~---~-~ig~h~ 138 (311)
T PRK06130 78 SGADLVIEAVPEKL-------------ELKRDVFARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPE---R-FVGTHF 138 (311)
T ss_pred ccCCEEEEeccCcH-------------HHHHHHHHHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcc---c-EEEEcc
Confidence 99999999998532 123567777888777776653 3443322 345544443211 1 233333
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-ChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
. .|... ... ..++.+..+ +++..+.+.++++.++. .++... +.... +++|.+ .++++|...
T Consensus 139 ~--~p~~~----~~l-~~i~~g~~t--~~~~~~~v~~l~~~~G~-~~v~~~~d~~G~----i~nr~~----~~~~~Ea~~ 200 (311)
T PRK06130 139 F--TPADV----IPL-VEVVRGDKT--SPQTVATTMALLRSIGK-RPVLVKKDIPGF----IANRIQ----HALAREAIS 200 (311)
T ss_pred C--CCCcc----Cce-EEEeCCCCC--CHHHHHHHHHHHHHcCC-EEEEEcCCCCCc----HHHHHH----HHHHHHHHH
Confidence 1 11111 111 123444322 58899999999999873 445553 32211 455543 488999999
Q ss_pred HHHHhCCCHHHHHHHhcCC
Q 017997 236 LCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~~~ 254 (362)
++++.++|++++.+++...
T Consensus 201 l~~~g~~~~~~id~~~~~~ 219 (311)
T PRK06130 201 LLEKGVASAEDIDEVVKWS 219 (311)
T ss_pred HHHcCCCCHHHHHHHHHhc
Confidence 9999999999999999643
No 52
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=2.7e-15 Score=139.57 Aligned_cols=204 Identities=16% Similarity=0.188 Sum_probs=136.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC----------CCCCCCCChHHHHhhhcCCCEEEecC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD----------QLPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~----------~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
.||+|||+|.||..+|..|+.+ ||+|++||++++.++...+. .-.+.+...+. ...+++.++|
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-----~~~~l~~~~~ 78 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDA-----ALARLRFTTD 78 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHH-----HHhCeEeeCC
Confidence 4899999999999999999999 99999999999998763211 00011111111 2357889999
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhc-CCCCEEEEee-CCccccHHHHHHHHHhccC--C
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVS-KSDKIVVEKS-TVPVKTAEAIEKILTHNSK--G 147 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l-~~~~iVv~~S-Tv~~gt~~~l~~~l~~~~~--g 147 (362)
++ ++++||+||.|+|.. .+++ ...+..+.+.+ +++++++..| ++++.... ........ |
T Consensus 79 ~~-~~~~~d~ViEav~E~-----------~~~K--~~l~~~l~~~~~~~~~il~snTS~~~~~~la---~~~~~~~r~~g 141 (286)
T PRK07819 79 LG-DFADRQLVIEAVVED-----------EAVK--TEIFAELDKVVTDPDAVLASNTSSIPIMKLA---AATKRPGRVLG 141 (286)
T ss_pred HH-HhCCCCEEEEecccC-----------HHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHHHH---hhcCCCccEEE
Confidence 95 489999999999853 2333 56778888888 7888885533 45544322 21221111 2
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHh-ccCCCCcEEeCChhHHHHHHHHHhHHHHHH
Q 017997 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYA-HWVPEDRILTTNLWSAELSKLAANAFLAQR 226 (362)
Q Consensus 148 ~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ 226 (362)
.+| ++|.+..+.. .|+.|.. + ++++++++.+++. .++ +.++.+.+ ...++.|. +.
T Consensus 142 ~hf---~~P~~~~~lv---------Elv~~~~-T--~~~~~~~~~~~~~~~lg-k~pv~v~d-----~pGfi~nR---i~ 197 (286)
T PRK07819 142 LHF---FNPVPVLPLV---------ELVPTLV-T--SEATVARAEEFASDVLG-KQVVRAQD-----RSGFVVNA---LL 197 (286)
T ss_pred Eec---CCCcccCceE---------EEeCCCC-C--CHHHHHHHHHHHHHhCC-CCceEecC-----CCChHHHH---HH
Confidence 232 3554443322 3655543 3 5899999999988 476 35666554 23456676 46
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 227 ISSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 227 ia~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
.+++||...+.++...+++++..++..
T Consensus 198 ~~~~~Ea~~ll~eGv~~~~dID~~~~~ 224 (286)
T PRK07819 198 VPYLLSAIRMVESGFATAEDIDKAMVL 224 (286)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 799999999998877889999998854
No 53
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.68 E-value=1.8e-15 Score=139.78 Aligned_cols=211 Identities=21% Similarity=0.271 Sum_probs=146.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----CCCCCCC-hHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----LPIYEPG-LDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----~~~~e~~-l~~~~~~~~~~~l~~t~d~~~a 75 (362)
++||+|||+|.||..+|..+|.. |++|+++|++++.+++..+.. ....+.+ +.+.-.+...++++.++++. +
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~--G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~ 79 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA--GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-A 79 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc--CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-H
Confidence 47999999999999999999997 999999999988766443210 0000110 11100011235688888887 4
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (362)
+++||+||.+|+. +.+++ +++++++.+++++++|+ .++|++++.... .......+ |.||
T Consensus 80 l~~~DlVIEAv~E-----------~levK--~~vf~~l~~~~~~~aIlASNTSsl~it~ia---~~~~rper~iG~HF-- 141 (307)
T COG1250 80 LKDADLVIEAVVE-----------DLELK--KQVFAELEALAKPDAILASNTSSLSITELA---EALKRPERFIGLHF-- 141 (307)
T ss_pred hccCCEEEEeccc-----------cHHHH--HHHHHHHHhhcCCCcEEeeccCCCCHHHHH---HHhCCchhEEEEec--
Confidence 9999999999985 23444 78999999999999998 888888876432 22211111 3343
Q ss_pred eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 153 ~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
++|....+ ...||-| ..| ++++++++.++..+++ +.++...| .-.++.|. +..++++|
T Consensus 142 -fNP~~~m~---------LVEvI~g-~~T--~~e~~~~~~~~~~~ig-K~~vv~~D-----~pGFi~NR---il~~~~~e 199 (307)
T COG1250 142 -FNPVPLMP---------LVEVIRG-EKT--SDETVERVVEFAKKIG-KTPVVVKD-----VPGFIVNR---LLAALLNE 199 (307)
T ss_pred -cCCCCcce---------eEEEecC-CCC--CHHHHHHHHHHHHHcC-CCCEeecC-----CCceehHh---HHHHHHHH
Confidence 46655533 2235544 434 5899999999999987 44544444 23467888 45699999
Q ss_pred HHHHHHHhCCCHHHHHHHhcCC
Q 017997 233 MSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
...+.++..+++++|..++...
T Consensus 200 A~~l~~eGva~~e~ID~~~~~~ 221 (307)
T COG1250 200 AIRLLEEGVATPEEIDAAMRQG 221 (307)
T ss_pred HHHHHHhCCCCHHHHHHHHHhc
Confidence 9999999889999999999753
No 54
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.68 E-value=3.2e-15 Score=139.80 Aligned_cols=209 Identities=15% Similarity=0.121 Sum_probs=134.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh---------hcCCCEEEecCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ---------CRGKNLFFSTDV 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~---------~~~~~l~~t~d~ 72 (362)
.||+|||+|.||.++|..|+++ |++|++||++++.++...+....- ..+++.++.+ ....++.++++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~-~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESG-PYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhh-hhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 5899999999999999999999 999999999999987543210000 0001111000 012357778887
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC--CCce
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKF 150 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~--g~~~ 150 (362)
+ ++++||+||+|+|++. ....++++++.+.++++++++ ++|. .-+...+...+....+ |.+|
T Consensus 81 ~-~~~~aDlVieav~e~~-------------~~k~~~~~~l~~~~~~~~il~-S~ts-g~~~~~la~~~~~~~r~ig~hf 144 (291)
T PRK06035 81 E-SLSDADFIVEAVPEKL-------------DLKRKVFAELERNVSPETIIA-SNTS-GIMIAEIATALERKDRFIGMHW 144 (291)
T ss_pred H-HhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEE-EcCC-CCCHHHHHhhcCCcccEEEEec
Confidence 4 5899999999998642 123677888888888888764 2222 2233445444432211 2221
Q ss_pred EEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHH
Q 017997 151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSV 230 (362)
Q Consensus 151 ~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~ 230 (362)
+.|....++. .++ .+..+ ++++++++.++++.++ +.++++.+....-..|+.. .++
T Consensus 145 ---~~P~~~~~~v---------Ev~-~g~~T--~~e~~~~~~~~~~~lg-k~~v~v~d~pgfv~nRl~~--------~~~ 200 (291)
T PRK06035 145 ---FNPAPVMKLI---------EVV-RAALT--SEETFNTTVELSKKIG-KIPIEVADVPGFFTTRFIE--------GWL 200 (291)
T ss_pred ---CCCcccCccE---------EEe-CCCCC--CHHHHHHHHHHHHHcC-CeEEEeCCCCCeeHHHHHH--------HHH
Confidence 3443333321 243 33333 5899999999999987 3566677766655555444 467
Q ss_pred HHHHHHHHHhCCCHHHHHHHhcC
Q 017997 231 NAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 231 nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
||...+.++--++++++..++..
T Consensus 201 ~ea~~~~~~g~a~~~~iD~~~~~ 223 (291)
T PRK06035 201 LEAIRSFEIGIATIKDIDEMCKL 223 (291)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhh
Confidence 89999988755789999998854
No 55
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.67 E-value=4.2e-15 Score=138.33 Aligned_cols=203 Identities=17% Similarity=0.205 Sum_probs=135.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH-----------cCCCCCCCCChHHHHhhhcCCCEEEe
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN-----------SDQLPIYEPGLDGVVKQCRGKNLFFS 69 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~-----------~~~~~~~e~~l~~~~~~~~~~~l~~t 69 (362)
|+||+|||+|+||.++|..|+++ |++|++||+++++++... +.. .+....... ...+++++
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g-~~~~~~~~~-----~~~~l~~~ 74 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKG-KMTEADKEA-----ALARITGT 74 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHH-----HHhCeEEe
Confidence 46899999999999999999999 999999999999885322 110 000000111 11368888
Q ss_pred cCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccCCC
Q 017997 70 TDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSKGI 148 (362)
Q Consensus 70 ~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~g~ 148 (362)
+|+++ +++||+||+|+|... ..-.++++.+.++++++++| .++|+++.. .+.+.+....+
T Consensus 75 ~~~~~-~~~aDlVi~av~e~~-------------~~k~~~~~~l~~~~~~~~il~s~ts~~~~~---~la~~~~~~~r-- 135 (282)
T PRK05808 75 TDLDD-LKDADLVIEAATENM-------------DLKKKIFAQLDEIAKPEAILATNTSSLSIT---ELAAATKRPDK-- 135 (282)
T ss_pred CCHHH-hccCCeeeecccccH-------------HHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHHhhCCCcc--
Confidence 89865 899999999997422 22357888999999999887 333333332 44444432211
Q ss_pred ceEEee---CCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHH
Q 017997 149 KFQILS---NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQ 225 (362)
Q Consensus 149 ~~~v~~---~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~ 225 (362)
++.. .|....++. .++-| ..+ +++..+.+.++++.++. .++.+.| ...++.|. +
T Consensus 136 --~ig~h~~~P~~~~~~v---------ev~~g-~~t--~~e~~~~~~~l~~~lGk-~pv~~~d-----~~g~i~~R---i 192 (282)
T PRK05808 136 --VIGMHFFNPVPVMKLV---------EIIRG-LAT--SDATHEAVEALAKKIGK-TPVEVKN-----APGFVVNR---I 192 (282)
T ss_pred --eEEeeccCCcccCccE---------EEeCC-CCC--CHHHHHHHHHHHHHcCC-eeEEecC-----ccChHHHH---H
Confidence 2232 333333221 24333 323 58999999999999873 5555543 33456666 4
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 226 RISSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 226 ~ia~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
..+++||...+.++.-.+++++..++..
T Consensus 193 ~~~~~~ea~~~~~~gv~~~~diD~~~~~ 220 (282)
T PRK05808 193 LIPMINEAIFVLAEGVATAEDIDEGMKL 220 (282)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 5699999999998877889999998853
No 56
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.67 E-value=5.7e-15 Score=138.34 Aligned_cols=205 Identities=15% Similarity=0.201 Sum_probs=133.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh---------hhcCCCEEEecCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK---------QCRGKNLFFSTDV 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~---------~~~~~~l~~t~d~ 72 (362)
.||+|||+|.||.++|..|+.+ |++|++||+++++++...+... ..++.+.+ ....+++.++++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 78 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSIS----SSLARLVKKGKMSQEEADATLGRIRCTTNL 78 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCCCHHHHHHHHhceEeeCCH
Confidence 5899999999999999999999 9999999999988764322100 00000000 0012456777777
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE-EeeCCccccHHHHHHHHHhccC--CCc
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSK--GIK 149 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv-~~STv~~gt~~~l~~~l~~~~~--g~~ 149 (362)
+ ++++||+||+|||... ++ ...+++++.+.++++++|+ ++|++++... .+.+..... +.+
T Consensus 79 ~-~~~~aD~Vieav~e~~-----------~~--k~~v~~~l~~~~~~~~il~s~tS~i~~~~l---~~~~~~~~r~~g~h 141 (295)
T PLN02545 79 E-ELRDADFIIEAIVESE-----------DL--KKKLFSELDRICKPSAILASNTSSISITRL---ASATQRPQQVIGMH 141 (295)
T ss_pred H-HhCCCCEEEEcCccCH-----------HH--HHHHHHHHHhhCCCCcEEEECCCCCCHHHH---HhhcCCCcceEEEe
Confidence 5 5899999999998532 22 3566788888899998875 7888866543 333322111 111
Q ss_pred eEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHH
Q 017997 150 FQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229 (362)
Q Consensus 150 ~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (362)
. ++|....+ .. .++.+..+ +++..++++++++.++. .++++.+.. .++.|. +..++
T Consensus 142 --~-~~pp~~~~---------lv-eiv~g~~t--~~e~~~~~~~ll~~lG~-~~~~~~d~~-----g~i~nr---i~~~~ 197 (295)
T PLN02545 142 --F-MNPPPIMK---------LV-EIIRGADT--SDEVFDATKALAERFGK-TVVCSQDYP-----GFIVNR---ILMPM 197 (295)
T ss_pred --c-cCCcccCc---------eE-EEeCCCCC--CHHHHHHHHHHHHHcCC-eeEEecCcc-----cHHHHH---HHHHH
Confidence 1 23332211 11 23444333 58899999999999873 455554432 245555 34578
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 230 VNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 230 ~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
+||..++.++...+++++..++..
T Consensus 198 ~~ea~~~~~~gv~~~~~iD~~~~~ 221 (295)
T PLN02545 198 INEAFYALYTGVASKEDIDTGMKL 221 (295)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999999977899999988754
No 57
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.66 E-value=7.1e-14 Score=137.35 Aligned_cols=202 Identities=17% Similarity=0.216 Sum_probs=137.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+||| +|.||.++|..|.+. |++|++||+++++.+.+... .++.++++..+++.++|
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~------------------~gv~~~~~~~e~~~~aD 60 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE------------------LGVEYANDNIDAAKDAD 60 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH------------------cCCeeccCHHHHhccCC
Confidence 7999997 899999999999998 89999999998886554331 12345667777789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+|+|.. .+.++++++.+.++++++|++.+++.+...+.+.+.++. +.. ++..+|-+.
T Consensus 61 vVIlavp~~---------------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~---~~~-~V~~HPmaG- 120 (437)
T PRK08655 61 IVIISVPIN---------------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE---GVE-ILPTHPMFG- 120 (437)
T ss_pred EEEEecCHH---------------HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC---CCE-EEEcCCCCC-
Confidence 999998842 356788899999999999998887766666666554432 222 455677543
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
|... . +....+++. +....+++..+.++++|+.++ .++..+++. +.-+++.+......+.+...+.. ++++
T Consensus 121 p~~~--~-~~g~~~il~-p~~~~~~~~~~~v~~ll~~~G--~~v~~~~~e--~HD~~~a~vs~lph~~a~al~~~-l~~~ 191 (437)
T PRK08655 121 PRTP--S-LKGQVVILT-PTEKRSNPWFDKVKNFLEKEG--ARVIVTSPE--EHDRIMSVVQGLTHFAYISIAST-LKRL 191 (437)
T ss_pred CCCc--c-cCCCEEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHc
Confidence 3322 1 222233332 222224678899999999886 456666654 55666666666566655555443 4667
Q ss_pred CCCHHHHHHHhc
Q 017997 241 GANVSQVAFAVG 252 (362)
Q Consensus 241 g~d~~~v~~~~~ 252 (362)
|.|..+.....+
T Consensus 192 g~~~~~~~~~a~ 203 (437)
T PRK08655 192 GVDIKESRKFAS 203 (437)
T ss_pred CCCHHHHHhhcC
Confidence 888776554443
No 58
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.64 E-value=2.2e-14 Score=134.84 Aligned_cols=209 Identities=21% Similarity=0.261 Sum_probs=139.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||+.+|..|+++ ||+|+++++++++++.+++.+..+ +.+ + . ...+..+++..+ ++++|+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~-~~~-~--~----~~~~~~~~~~~~-~~~~d~ 69 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRL-EDG-E--I----TVPVLAADDPAE-LGPQDL 69 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcc-cCC-c--e----eecccCCCChhH-cCCCCE
Confidence 7999999999999999999998 999999999999999888754433 100 0 0 011234556665 489999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC-cccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP-EFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-e~~~ 160 (362)
||+|+|++ .+.++++.+.+.+.++++|+... ...+..+.+.+.+.+.. .-..+.+.+ .+..
T Consensus 70 vila~k~~---------------~~~~~~~~l~~~l~~~~~iv~~~-nG~~~~~~l~~~~~~~~--i~~~~~~~~~~~~~ 131 (304)
T PRK06522 70 VILAVKAY---------------QLPAALPSLAPLLGPDTPVLFLQ-NGVGHLEELAAYIGPER--VLGGVVTHAAELEG 131 (304)
T ss_pred EEEecccc---------------cHHHHHHHHhhhcCCCCEEEEec-CCCCcHHHHHHhcCccc--EEEEEEEEeeEecC
Confidence 99999853 24778889999888877665432 34455566655543321 001122222 2334
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH-------------------
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------- 221 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~------------------- 221 (362)
|+...+. . ..++.+|..+.. .+..+.+.++|+..+. ......|+...+|.|++.|+
T Consensus 132 p~~v~~~-~-~g~~~ig~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~ 206 (304)
T PRK06522 132 PGVVRHT-G-GGRLKIGEPDGE--SAAAEALADLLNAAGL-DVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLAD 206 (304)
T ss_pred CCEEEEc-C-CCCEEEeCCCCC--cHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcC
Confidence 5544322 2 245667865431 2346678888887652 22345789999999999885
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCCH
Q 017997 222 --FLAQRISSVNAMSALCEATGANV 244 (362)
Q Consensus 222 --~~~~~ia~~nE~~~l~~~~g~d~ 244 (362)
.+.+..+.+.|+..++++.|+++
T Consensus 207 ~~~~~l~~~~~~E~~~v~~a~G~~~ 231 (304)
T PRK06522 207 PDYRALIRALMEEVAAVAEAEGVHL 231 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 23456678999999999998753
No 59
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.62 E-value=2.2e-14 Score=148.95 Aligned_cols=204 Identities=17% Similarity=0.219 Sum_probs=143.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHhhhcCCCEEEec
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
+.||+|||+|.||..+|..++.+ ||+|+++|++++.++...+.. -.+.+...+. ..+++++++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~-----~~~~i~~~~ 385 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAG-----VLSSIRPTL 385 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEEeC
Confidence 35899999999999999999999 999999999998876432110 0111111111 235799999
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--C
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g 147 (362)
|+++ +++||+||.|+|.. .+++ +++++++.+++++++++ .++|++++... ...+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E~-----------l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~l---a~~~~~p~r~~g 448 (715)
T PRK11730 386 DYAG-FERVDVVVEAVVEN-----------PKVK--AAVLAEVEQKVREDTILASNTSTISISLL---AKALKRPENFCG 448 (715)
T ss_pred CHHH-hcCCCEEEecccCc-----------HHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHHH---HhhcCCCccEEE
Confidence 9965 89999999999852 3444 88999999999999988 66777876543 222222111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHH
Q 017997 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (362)
Q Consensus 148 ~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~i 227 (362)
.+| ++|....+ ...||.|.. + ++++++.+..++..++ +.++.+.| ...++.|.+ ..
T Consensus 449 ~Hf---f~P~~~~~---------lVEvv~g~~-T--~~~~~~~~~~~~~~lg-k~pv~v~d-----~pGfv~nRi---~~ 504 (715)
T PRK11730 449 MHF---FNPVHRMP---------LVEVIRGEK-T--SDETIATVVAYASKMG-KTPIVVND-----CPGFFVNRV---LF 504 (715)
T ss_pred Eec---CCcccccc---------eEEeeCCCC-C--CHHHHHHHHHHHHHhC-CceEEecC-----cCchhHHHH---HH
Confidence 333 45544432 123555533 3 5899999999999987 46776643 446788884 56
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 228 SSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 228 a~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
+++||...+.++. +++++|..++..
T Consensus 505 ~~~~ea~~lv~~G-a~~e~ID~a~~~ 529 (715)
T PRK11730 505 PYFAGFSQLLRDG-ADFRQIDKVMEK 529 (715)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence 8899998888865 999999988753
No 60
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.61 E-value=2.5e-15 Score=130.30 Aligned_cols=171 Identities=20% Similarity=0.306 Sum_probs=103.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC----C-CCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP----I-YEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~----~-~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
||+|||+|.||..+|..++.+ |++|++||++++.++...+.... . ....+.+-.......++++++|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 799999999999999999999 99999999999887654431100 0 000011000011235799999999855
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceEEee
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQILS 154 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~ 154 (362)
+||+||.|+|.. +..-++.++++.+.+++++++ .++|++++.. +...+....+ |.+| +
T Consensus 78 ~adlViEai~E~-------------l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~---la~~~~~p~R~ig~Hf---~ 138 (180)
T PF02737_consen 78 DADLVIEAIPED-------------LELKQELFAELDEICPPDTILASNTSSLSISE---LAAALSRPERFIGMHF---F 138 (180)
T ss_dssp TESEEEE-S-SS-------------HHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH---HHTTSSTGGGEEEEEE----
T ss_pred hhheehhhcccc-------------HHHHHHHHHHHHHHhCCCceEEecCCCCCHHH---HHhccCcCceEEEEec---c
Confidence 999999999852 233488999999999999988 6666676653 2222211111 3332 3
Q ss_pred CCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCC
Q 017997 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTN 208 (362)
Q Consensus 155 ~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 208 (362)
+|.+..|- ..|+.| ..+ ++++++.+..+++.++ +.++.+.|
T Consensus 139 ~P~~~~~l---------VEvv~~-~~T--~~~~~~~~~~~~~~~g-k~pv~v~D 179 (180)
T PF02737_consen 139 NPPHLMPL---------VEVVPG-PKT--SPETVDRVRALLRSLG-KTPVVVKD 179 (180)
T ss_dssp SSTTT--E---------EEEEE--TTS---HHHHHHHHHHHHHTT--EEEEEES
T ss_pred cccccCce---------EEEeCC-CCC--CHHHHHHHHHHHHHCC-CEEEEecC
Confidence 56544331 136555 434 6899999999999986 45665544
No 61
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.60 E-value=3.9e-14 Score=146.73 Aligned_cols=204 Identities=16% Similarity=0.219 Sum_probs=143.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC----------CCCCCCChHHHHhhhcCCCEEEec
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ----------LPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
+.+|+|||+|.||..+|..++.+ |++|+++|++++.+++..+.. -.+.+...+. ...+++.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~ 385 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAG-----VLNGITPTL 385 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEEeC
Confidence 36899999999999999999999 999999999998877533210 0011111111 135789999
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--C
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g 147 (362)
|++. +++||+||.||+.. .+++ +++++++.+++++++|+ .++|++++... ...+..... |
T Consensus 386 ~~~~-~~~aDlViEav~E~-----------l~~K--~~vf~~l~~~~~~~~ilasnTS~l~i~~i---a~~~~~p~r~ig 448 (714)
T TIGR02437 386 SYAG-FDNVDIVVEAVVEN-----------PKVK--AAVLAEVEQHVREDAILASNTSTISISLL---AKALKRPENFCG 448 (714)
T ss_pred CHHH-hcCCCEEEEcCccc-----------HHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHHH---HhhcCCcccEEE
Confidence 9864 89999999999853 3344 88999999999999988 66777776543 222222111 3
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHH
Q 017997 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (362)
Q Consensus 148 ~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~i 227 (362)
.+| ++|....+ ...||-| ..| ++++++.+..++..++ +.++.+.| ...++.|.+ ..
T Consensus 449 ~Hf---f~P~~~~~---------lvEvv~g-~~T--s~~~~~~~~~~~~~lg-k~pv~v~d-----~pGfi~NRl---~~ 504 (714)
T TIGR02437 449 MHF---FNPVHRMP---------LVEVIRG-EKS--SDETIATVVAYASKMG-KTPIVVND-----CPGFFVNRV---LF 504 (714)
T ss_pred Eec---CCCcccCc---------eEeecCC-CCC--CHHHHHHHHHHHHHcC-CEEEEeCC-----cccchHHHH---HH
Confidence 333 45654433 1235544 433 6899999999999987 46676643 345788884 56
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcC
Q 017997 228 SSVNAMSALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 228 a~~nE~~~l~~~~g~d~~~v~~~~~~ 253 (362)
++++|...+.++ |+++++|..++..
T Consensus 505 ~~~~ea~~l~~e-G~~~~~ID~a~~~ 529 (714)
T TIGR02437 505 PYFGGFSKLLRD-GADFVRIDKVMEK 529 (714)
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHh
Confidence 889999888875 5999999998753
No 62
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.60 E-value=2.4e-13 Score=128.39 Aligned_cols=261 Identities=17% Similarity=0.092 Sum_probs=155.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|||+|.||+.+|..|+++ ||+|+++.+++ .+.+++....+....-+.. .....++++.++ ...+|+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~D~ 75 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSD--YEAVRENGLQVDSVHGDFH-----LPPVQAYRSAED-MPPCDW 75 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCC--HHHHHhCCeEEEeCCCCee-----ecCceEEcchhh-cCCCCE
Confidence 8999999999999999999999 99999999986 3455554333221110000 011334455543 678999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAE 161 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~ 161 (362)
||+|||+.. +.++++.+.+.+.++++|+. -+...+..+.+.+.+.+... ..-.+-.+-.+..|
T Consensus 76 vilavK~~~---------------~~~~~~~l~~~~~~~~~iv~-lqNG~~~~e~l~~~~~~~~v-~~g~~~~~a~~~~p 138 (313)
T PRK06249 76 VLVGLKTTA---------------NALLAPLIPQVAAPDAKVLL-LQNGLGVEEQLREILPAEHL-LGGLCFICSNRVGP 138 (313)
T ss_pred EEEEecCCC---------------hHhHHHHHhhhcCCCCEEEE-ecCCCCcHHHHHHHCCCCcE-EEEeeeEeEecCCC
Confidence 999998642 35677888888888776653 33444555666666543210 00011122234455
Q ss_pred CccccccCCCCeEEEecCCCcc----hHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH----------------
Q 017997 162 GTAIQDLFNPDRVLIGGRETPE----GQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---------------- 221 (362)
Q Consensus 162 g~a~~~~~~~~~viiG~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~---------------- 221 (362)
|...+. ...++.+|..+... ..+..+.+.++|+..+. ......|+....|.|++.|+
T Consensus 139 g~v~~~--~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l 215 (313)
T PRK06249 139 GVIHHL--AYGRVNLGYHSGPAADDGITARVEEGAALFRAAGI-DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPL 215 (313)
T ss_pred eEEEEC--CCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCC-CceeCchHHHHHHhHhheecchhHHHHHhCCChHHH
Confidence 554332 23345677653211 03556677888887642 24456799999999999776
Q ss_pred -----HHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHhcCCCCC-CCCCccCCCCCcccChhHh--HHHHHHHHHhCC
Q 017997 222 -----FLAQRISSVNAMSALCEATGAN-----VSQVAFAVGTDSRI-GPKFLNASVGFGGSCFQKD--ILNLVYICECNG 288 (362)
Q Consensus 222 -----~~~~~ia~~nE~~~l~~~~g~d-----~~~v~~~~~~~~~i-~~~~~~~g~g~gg~cl~kD--~~~l~~~a~~~g 288 (362)
.+.+..+.+.|+..++++.|++ .+++++.+...+.. .+++.+-. .|.=..-| ..++++.++++|
T Consensus 216 ~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~sSM~qD~~---~gr~tEid~i~G~vv~~a~~~G 292 (313)
T PRK06249 216 MADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPDYRPSMYHDFE---EGRPLELEAIYANPLAAARAAG 292 (313)
T ss_pred HhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCChHHHHHH---CCCcccHHHHhhHHHHHHHHhC
Confidence 3456778899999999999986 33344433322110 01111000 01101111 236888999999
Q ss_pred CchhHHHHH
Q 017997 289 LPEVAEYWK 297 (362)
Q Consensus 289 ~~~~~~~~~ 297 (362)
++ .|..+
T Consensus 293 i~--~P~~~ 299 (313)
T PRK06249 293 CA--MPRVE 299 (313)
T ss_pred CC--CcHHH
Confidence 98 55443
No 63
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.59 E-value=4e-13 Score=129.60 Aligned_cols=180 Identities=15% Similarity=0.180 Sum_probs=122.4
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+++|+||| +|.||.++|..|.++ ||+|++||+++. ++.++++++|
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~~~~--------------------------------~~~~~~~~~a 143 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQDDW--------------------------------DRAEDILADA 143 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCCCcc--------------------------------hhHHHHHhcC
Confidence 36899998 999999999999999 999999998521 1234567899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|+|.. ...+.++++.+ ++++++|++.|++.+...+.+.+.+. + . ++..||-+.
T Consensus 144 DlVilavP~~---------------~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~----~-~-fvg~HPm~G 201 (374)
T PRK11199 144 GMVIVSVPIH---------------LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS----G-P-VLGLHPMFG 201 (374)
T ss_pred CEEEEeCcHH---------------HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC----C-C-EEeeCCCCC
Confidence 9999998842 24667788888 88999999887776554444433221 1 2 566788555
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCCh-hHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNL-WSAELSKLAANAFLAQRISSVNAMSALCE 238 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~ 238 (362)
.+-. . +....+++... + ++++.+.+.++++.++ ..+..+++ +..+++++++-. ..+....++..+++
T Consensus 202 ~~~~---~-~~~~~vv~~~~-~--~~~~~~~~~~l~~~lG--~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~ 269 (374)
T PRK11199 202 PDVG---S-LAKQVVVVCDG-R--QPEAYQWLLEQIQVWG--ARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK 269 (374)
T ss_pred CCCc---c-cCCCEEEEcCC-C--CchHHHHHHHHHHHCC--CEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3322 2 22223444322 1 3678889999999986 35555554 567788988833 45555566666665
Q ss_pred HhCCCHHHHHH
Q 017997 239 ATGANVSQVAF 249 (362)
Q Consensus 239 ~~g~d~~~v~~ 249 (362)
.+.|..++.+
T Consensus 270 -~~~~~~~~~~ 279 (374)
T PRK11199 270 -ENVDLEQLLA 279 (374)
T ss_pred -cCCCHHHHHH
Confidence 6777776644
No 64
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.59 E-value=4.2e-14 Score=146.87 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=141.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC----C-CChHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY----E-PGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~----e-~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
+.+|+|||+|.||..+|..++.+ |++|+++|++++.+++..+...... + ..+.+.-......+++.++|+++
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 411 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG- 411 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 35899999999999999999999 9999999999998776432110000 0 00000000012357999999974
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceEE
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQI 152 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~v 152 (362)
+++||+||.||+.. .+++ +++++++.+++++++|+ .++|++++... ...+..... |.+|
T Consensus 412 ~~~aDlViEAv~E~-----------l~~K--~~vf~~l~~~~~~~~ilasNTSsl~i~~l---a~~~~~p~r~ig~Hf-- 473 (737)
T TIGR02441 412 FKNADMVIEAVFED-----------LSLK--HKVIKEVEAVVPPHCIIASNTSALPIKDI---AAVSSRPEKVIGMHY-- 473 (737)
T ss_pred hccCCeehhhcccc-----------HHHH--HHHHHHHHhhCCCCcEEEEcCCCCCHHHH---HhhcCCccceEEEec--
Confidence 89999999999853 3444 78999999999999988 67777877543 222222111 3333
Q ss_pred eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 153 ~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
++|.+..+ ...||-| ..| ++++++.+..++..++ +.++.+.|. ..++.|.+ ..++++|
T Consensus 474 -f~P~~~m~---------LvEvv~g-~~T--s~~~~~~~~~~~~~lg-k~pv~v~d~-----pGFi~NRi---~~~~~~e 531 (737)
T TIGR02441 474 -FSPVDKMQ---------LLEIITH-DGT--SKDTLASAVAVGLKQG-KVVIVVKDG-----PGFYTTRC---LGPMLAE 531 (737)
T ss_pred -cCCcccCc---------eEEEeCC-CCC--CHHHHHHHHHHHHHCC-CeEEEECCc-----CCchHHHH---HHHHHHH
Confidence 45654432 2235544 434 6899999999999987 456666543 34677874 4589999
Q ss_pred HHHHHHHhCCCHHHHHHHh
Q 017997 233 MSALCEATGANVSQVAFAV 251 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~ 251 (362)
...+.++ |+++++|..++
T Consensus 532 a~~lv~e-Gv~~~~ID~a~ 549 (737)
T TIGR02441 532 VIRLLQE-GVDPKKLDKLT 549 (737)
T ss_pred HHHHHHc-CCCHHHHHHHH
Confidence 9888865 67998888875
No 65
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.59 E-value=2.9e-13 Score=124.25 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=112.9
Q ss_pred ceEEEEcCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHH-----HHHcCCCCCCCCChHH
Q 017997 2 VKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRIN-----AWNSDQLPIYEPGLDG 56 (362)
Q Consensus 2 mkI~VIGlG~--------------------~G~~lA~~la~~~~G~~V~~~d~~~~~~~-----~l~~~~~~~~e~~l~~ 56 (362)
|||.|.|+|+ -|.+||.+|+++ ||+|++||+++++.+ .+.+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA--GheV~V~Drnrsa~e~e~~e~Lae------------ 66 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA--GHDVVLAEPNREFMSDDLWKKVED------------ 66 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhHHHHH------------
Confidence 8999999994 588999999999 999999999987653 2332
Q ss_pred HHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 57 VVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 57 ~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
.+...++++.++++++|+||+|+|++ ..++++++.+.+.++++++||++||++|.+...
T Consensus 67 -------aGA~~AaS~aEAAa~ADVVIL~LPd~--------------aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~ 125 (341)
T TIGR01724 67 -------AGVKVVSDDKEAAKHGEIHVLFTPFG--------------KGTFSIARTIIEHVPENAVICNTCTVSPVVLYY 125 (341)
T ss_pred -------CCCeecCCHHHHHhCCCEEEEecCCH--------------HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHH
Confidence 12456677888899999999999864 245677788999999999999999999988754
Q ss_pred -HHHHHHhccCCCceEE-eeCCcccccCccccccCCCCeEEEecCC----CcchHHHHHHHHHHHhccCCCCcEE
Q 017997 137 -IEKILTHNSKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRE----TPEGQKAVKALKDVYAHWVPEDRIL 205 (362)
Q Consensus 137 -l~~~l~~~~~g~~~~v-~~~Pe~~~~g~a~~~~~~~~~viiG~~~----~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (362)
+.+.|+-.. .|+.| .|||- ..||..-++ .+++++.. .-.+++..+++.++-++.. +.++.
T Consensus 126 ~~e~~l~~~r--~d~~v~s~HP~-~vP~~~~~~-----~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~-~~~~~ 191 (341)
T TIGR01724 126 SLEKILRLKR--TDVGISSMHPA-AVPGTPQHG-----HYVIGGKPTAGKEMATEEQISKCVELAKSTG-KKAYV 191 (341)
T ss_pred HHHHHhhcCc--cccCeeccCCC-CCCCCCCCc-----eeeeccccccccccCCHHHHHHHHHHHHHhC-CCeee
Confidence 344444221 23333 36774 345554322 23344431 1335788888999888876 34443
No 66
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.58 E-value=2.6e-13 Score=125.17 Aligned_cols=195 Identities=11% Similarity=0.152 Sum_probs=121.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC----eEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI----EVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~----~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.||.+|+..|.++ |+ +|++| |+++++.+.+.+. ++..+++..+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~--g~~~~~~i~v~~~r~~~~~~~~~~~-------------------g~~~~~~~~e~~ 59 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS--GVVPPSRISTADDSNPARRDVFQSL-------------------GVKTAASNTEVV 59 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC--CCCCcceEEEEeCCCHHHHHHHHHc-------------------CCEEeCChHHHH
Confidence 8999999999999999999998 88 89999 9999998776541 245567777778
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe-eCCccccHHHHHHHHHhccCCCceEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSN 155 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (362)
+++|+||+|+| |. .+.++++++.+.++++++|+.. ++++. +.+.+.+.. .. .+-..
T Consensus 60 ~~aDvVil~v~-~~--------------~~~~vl~~l~~~~~~~~~iIs~~~g~~~---~~l~~~~~~----~~-vvr~m 116 (266)
T PLN02688 60 KSSDVIILAVK-PQ--------------VVKDVLTELRPLLSKDKLLVSVAAGITL---ADLQEWAGG----RR-VVRVM 116 (266)
T ss_pred hcCCEEEEEEC-cH--------------HHHHHHHHHHhhcCCCCEEEEecCCCcH---HHHHHHcCC----CC-EEEEC
Confidence 89999999996 32 3677888888888888877632 33332 333322221 11 12234
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHH--HhHHHHHHHHHHHHH
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLA--ANAFLAQRISSVNAM 233 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~--~N~~~~~~ia~~nE~ 233 (362)
|..... . .....++..+.. .+++..+.++++|+.++ ..++...-..-.++-+. ..+|.+..+.. +
T Consensus 117 P~~~~~---~---~~~~~~l~~~~~--~~~~~~~~v~~l~~~~G--~~~~~~e~~~d~~~~~~g~g~a~~~~~~~a---~ 183 (266)
T PLN02688 117 PNTPCL---V---GEAASVMSLGPA--ATADDRDLVATLFGAVG--KIWVVDEKLLDAVTGLSGSGPAYIFLAIEA---L 183 (266)
T ss_pred CCcHHH---H---hCceEEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEeCHHHcchhHhhhcCHHHHHHHHHHH---H
Confidence 422111 0 111122333221 14778999999999986 33333211101111111 12333334444 4
Q ss_pred HHHHHHhCCCHHHHHHHhcC
Q 017997 234 SALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 234 ~~l~~~~g~d~~~v~~~~~~ 253 (362)
...+++.|+|+++..+++..
T Consensus 184 ~ea~~~~Gl~~~~a~~~~~~ 203 (266)
T PLN02688 184 ADGGVAAGLPRDVALSLAAQ 203 (266)
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 44488899999999988754
No 67
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.58 E-value=7.7e-14 Score=144.48 Aligned_cols=207 Identities=17% Similarity=0.178 Sum_probs=140.7
Q ss_pred CceEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCC----CCCC-CChHHHHhhhcCCCEEEecCHHh
Q 017997 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQL----PIYE-PGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la-~~~~G~~V~~~d~~~~~~~~l~~~~~----~~~e-~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
+.||+|||+|.||..+|..++ .+ |++|+++|++++.+++..+... ...+ ..+.+--......+++.++|++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 380 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA--GIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR- 380 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-
Confidence 368999999999999999998 57 9999999999987765432100 0000 0000000001135789999996
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceE
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQ 151 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~ 151 (362)
++++||+||.|+|.. .+++ ++++.++.+++++++|+ .++|++++... ...+..... |.+|
T Consensus 381 ~~~~adlViEav~E~-----------l~~K--~~v~~~l~~~~~~~~ilasnTS~l~i~~l---a~~~~~p~r~~g~Hf- 443 (699)
T TIGR02440 381 GFKDVDIVIEAVFED-----------LALK--HQMVKDIEQECAAHTIFASNTSSLPIGQI---AAAASRPENVIGLHY- 443 (699)
T ss_pred HhccCCEEEEecccc-----------HHHH--HHHHHHHHhhCCCCcEEEeCCCCCCHHHH---HHhcCCcccEEEEec-
Confidence 589999999999852 3334 78999999999999988 66777776543 222222111 3332
Q ss_pred EeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 152 ILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 152 v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
++|.+..+ ...||-| ..| ++++++.+..+++.++ +.++.+.| ...++.|. +..+++|
T Consensus 444 --fnP~~~~~---------lVEvv~g-~~T--~~~~~~~~~~~~~~~g-k~pv~v~d-----~pGfi~nR---l~~~~~~ 500 (699)
T TIGR02440 444 --FSPVEKMP---------LVEVIPH-AGT--SEQTIATTVALAKKQG-KTPIVVAD-----KAGFYVNR---ILAPYMN 500 (699)
T ss_pred --CCccccCc---------eEEEeCC-CCC--CHHHHHHHHHHHHHcC-CeEEEEcc-----ccchHHHH---HHHHHHH
Confidence 35544432 1235544 434 6899999999999987 46776644 34678888 4568999
Q ss_pred HHHHHHHHhCCCHHHHHHHh
Q 017997 232 AMSALCEATGANVSQVAFAV 251 (362)
Q Consensus 232 E~~~l~~~~g~d~~~v~~~~ 251 (362)
|...+.++ |++++++..++
T Consensus 501 Ea~~l~~~-G~~~~dID~a~ 519 (699)
T TIGR02440 501 EAARLLLE-GEPVEHIDKAL 519 (699)
T ss_pred HHHHHHHC-CCCHHHHHHHH
Confidence 99888874 57999998887
No 68
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.57 E-value=1e-13 Score=143.85 Aligned_cols=208 Identities=16% Similarity=0.158 Sum_probs=141.7
Q ss_pred CceEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCC----CCCC-ChHHHHhhhcCCCEEEecCHHh
Q 017997 1 MVKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLP----IYEP-GLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la-~~~~G~~V~~~d~~~~~~~~l~~~~~~----~~e~-~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
+.||+|||+|.||..+|..++ .. |++|+++|++++.++...+.... ..+. .+.+........+++.++|++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA--GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR- 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-
Confidence 368999999999999999999 77 99999999999877653321000 0000 000000001235799999985
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--CCceE
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--GIKFQ 151 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g~~~~ 151 (362)
++++||+||.|+|.. .+++ +++++++.+++++++++ .++|++++.... ..+..... |.+|
T Consensus 386 ~~~~aDlViEav~E~-----------~~~K--~~v~~~le~~~~~~~ilasnTS~l~i~~la---~~~~~p~r~ig~Hf- 448 (708)
T PRK11154 386 GFKHADVVIEAVFED-----------LALK--QQMVAEVEQNCAPHTIFASNTSSLPIGQIA---AAAARPEQVIGLHY- 448 (708)
T ss_pred HhccCCEEeeccccc-----------HHHH--HHHHHHHHhhCCCCcEEEECCCCCCHHHHH---HhcCcccceEEEec-
Confidence 589999999999852 3344 88999999999999988 667777776432 22222111 3333
Q ss_pred EeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 152 ILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 152 v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
++|.+..+ ...||-| ..| ++++++.+..++..++ +.++.+.| ...++.|. +..+++|
T Consensus 449 --f~P~~~~~---------lVEvv~g-~~T--s~~~~~~~~~~~~~~g-k~pv~v~d-----~pGfi~nR---l~~~~~~ 505 (708)
T PRK11154 449 --FSPVEKMP---------LVEVIPH-AKT--SAETIATTVALAKKQG-KTPIVVRD-----GAGFYVNR---ILAPYIN 505 (708)
T ss_pred --CCccccCc---------eEEEECC-CCC--CHHHHHHHHHHHHHcC-CceEEEec-----cCcHHHHH---HHHHHHH
Confidence 45654432 2236544 333 6899999999999887 35666543 34567787 4569999
Q ss_pred HHHHHHHHhCCCHHHHHHHhc
Q 017997 232 AMSALCEATGANVSQVAFAVG 252 (362)
Q Consensus 232 E~~~l~~~~g~d~~~v~~~~~ 252 (362)
|...+.++ |++++++..++.
T Consensus 506 EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 506 EAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHHHc-CCCHHHHHHHHH
Confidence 99999886 779988888864
No 69
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.54 E-value=1.4e-12 Score=122.88 Aligned_cols=168 Identities=20% Similarity=0.182 Sum_probs=111.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|+|||+|.||.++|..|.+. | ++|++||+++++.+.+++... ....+++.+++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~--g~~~~V~~~dr~~~~~~~a~~~g~-----------------~~~~~~~~~~~~~~a 67 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL--GLAGEIVGADRSAETRARARELGL-----------------GDRVTTSAAEAVKGA 67 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhCCC-----------------CceecCCHHHHhcCC
Confidence 6899999999999999999988 6 489999999998887764211 112345666678999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc-
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF- 158 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~- 158 (362)
|+||+|+|.+ ...++++++.+.++++.+|++.+++.....+.+.+.+.. +.. ++..+|-.
T Consensus 68 DvViiavp~~---------------~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~---~~~-~v~~hPm~g 128 (307)
T PRK07502 68 DLVILCVPVG---------------ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE---GVH-FIPGHPLAG 128 (307)
T ss_pred CEEEECCCHH---------------HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC---CCe-EEeCCCCCC
Confidence 9999998843 246677888888888988887666654444444333221 222 34455643
Q ss_pred ---cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChh
Q 017997 159 ---LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (362)
Q Consensus 159 ---~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 210 (362)
.+++.+..+++....+++... ...+++..+.+.++++.++ .++...++.
T Consensus 129 ~e~~G~~~a~~~l~~g~~~~l~~~-~~~~~~~~~~~~~l~~~lG--~~~~~~~~~ 180 (307)
T PRK07502 129 TEHSGPDAGFAELFENRWCILTPP-EGTDPAAVARLTAFWRALG--ARVEEMDPE 180 (307)
T ss_pred CcccchhhcCHHHHCCCeEEEeCC-CCCCHHHHHHHHHHHHHcC--CEEEEcCHH
Confidence 344444444444444445422 1224678899999999986 355555544
No 70
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=2.5e-13 Score=126.31 Aligned_cols=207 Identities=14% Similarity=0.179 Sum_probs=153.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh---hhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK---HVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~---a~~~ 78 (362)
+.|+|||+|.||..+|.+++++ ||+|.+|+|++++.+.+-++... .+++..+.++++ .++.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~--G~~VavyNRt~~ktd~f~~~~~~--------------~k~i~~~~sieefV~~Le~ 67 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH--GYTVAVYNRTTEKTDEFLAERAK--------------GKNIVPAYSIEEFVASLEK 67 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc--CceEEEEeCCHHHHHHHHHhCcc--------------CCCccccCcHHHHHHHhcC
Confidence 4699999999999999999999 99999999999999987654221 123433344433 3677
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
.--|+++|.... .+...++++.++|.+++|||+-.. ..+.|.++..+. .+. |.. |+..+-+
T Consensus 68 PRkI~lMVkAG~--------------~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL-~~~--Gi~-FvG~GVS 129 (473)
T COG0362 68 PRKILLMVKAGT--------------PVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKEL-SEK--GIL-FVGMGVS 129 (473)
T ss_pred CceEEEEEecCC--------------cHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHH-Hhc--CCe-EEecccc
Confidence 888999987531 356789999999999999998665 456666665443 333 333 3433333
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC---CCc--EEeCChhHHHHHHHHHhHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP---EDR--ILTTNLWSAELSKLAANAFLAQRISSVNA 232 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~---~~~--~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE 232 (362)
-..+|. ++.|.+|.||. +++.+.+.++|..+.. +.+ .+++.-+.+.++|+++|..-..-+.++.|
T Consensus 130 GGEeGA-----~~GPSiMpGG~-----~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE 199 (473)
T COG0362 130 GGEEGA-----RHGPSIMPGGQ-----KEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAE 199 (473)
T ss_pred cccccc-----ccCCCcCCCCC-----HHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHH
Confidence 233332 55667899987 8999999999998742 122 23455578899999999999999999999
Q ss_pred HHHHHHH-hCCCHHHHHHHhc
Q 017997 233 MSALCEA-TGANVSQVAFAVG 252 (362)
Q Consensus 233 ~~~l~~~-~g~d~~~v~~~~~ 252 (362)
...+.+. +|.+.+++.+...
T Consensus 200 ~Y~ilk~~lgls~~ei~~vF~ 220 (473)
T COG0362 200 AYDILKDGLGLSAEEIAEVFE 220 (473)
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 9999998 8998888777664
No 71
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.52 E-value=2.3e-12 Score=119.81 Aligned_cols=197 Identities=12% Similarity=0.184 Sum_probs=124.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G----~~V~~~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.||.+|+..|.++ | ++|+++|+++ ++.+.+.+. -+++.+++..+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~--g~~~~~~v~v~~r~~~~~~~~l~~~------------------~g~~~~~~~~e~~ 63 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA--NVVKGEQITVSNRSNETRLQELHQK------------------YGVKGTHNKKELL 63 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCCHHHHHHHHHh------------------cCceEeCCHHHHH
Confidence 8999999999999999999998 6 8999999975 466666541 1245567777778
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe-eCCccccHHHHHHHHHhccCCCceEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK-STVPVKTAEAIEKILTHNSKGIKFQILSN 155 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (362)
+++|+||+|||.. .+.++++++.+.++++++||.. +++++.+.+++ ++.. .. .+-..
T Consensus 64 ~~aDvVilav~p~---------------~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~---~~~~---~~-v~r~m 121 (279)
T PRK07679 64 TDANILFLAMKPK---------------DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNL---LQKD---VP-IIRAM 121 (279)
T ss_pred hcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cCCC---Ce-EEEEC
Confidence 8999999999842 3567778888888888888764 77776654442 3221 11 22234
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHh--HHHHHHHHHHHHH
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAAN--AFLAQRISSVNAM 233 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N--~~~~~~ia~~nE~ 233 (362)
|... . +. .....+++++.+ .+++..+.++++|+.++ ..+....-.---++-+... +| ...++.-+
T Consensus 122 Pn~~--~-~~---~~~~t~~~~~~~--~~~~~~~~v~~l~~~~G--~~~~v~e~~~~~~~a~~Gsgpa~---~~~~~eal 188 (279)
T PRK07679 122 PNTS--A-AI---LKSATAISPSKH--ATAEHIQTAKALFETIG--LVSVVEEEDMHAVTALSGSGPAY---IYYVVEAM 188 (279)
T ss_pred CCHH--H-HH---hcccEEEeeCCC--CCHHHHHHHHHHHHhCC--cEEEeCHHHhhhHHHhhcCHHHH---HHHHHHHH
Confidence 4211 1 11 111135556543 24678899999999987 3444321000001111111 22 22334444
Q ss_pred HHHHHHhCCCHHHHHHHhcC
Q 017997 234 SALCEATGANVSQVAFAVGT 253 (362)
Q Consensus 234 ~~l~~~~g~d~~~v~~~~~~ 253 (362)
...+++.|+|.++..+++..
T Consensus 189 ~e~~~~~Gl~~~~a~~~~~~ 208 (279)
T PRK07679 189 EKAAKKIGLKEDVAKSLILQ 208 (279)
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 55689999999888887654
No 72
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.51 E-value=1e-11 Score=114.45 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=110.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEE--EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCH-Hhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAV--VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV-EKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~--~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~-~~a~~ 77 (362)
+|+|+|+|+|.||.++|..|.++ |+.|.+ +|++.+..+.-.+... .-..+.+. .+++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~--g~~v~i~g~d~~~~~~~~a~~lgv-----------------~d~~~~~~~~~~~~ 63 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA--GLVVRIIGRDRSAATLKAALELGV-----------------IDELTVAGLAEAAA 63 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc--CCeEEEEeecCcHHHHHHHhhcCc-----------------ccccccchhhhhcc
Confidence 47999999999999999999999 887754 5555555443332110 01222333 45578
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC-CCceEEeeCC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNP 156 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~P 156 (362)
.+|+||+|||-. .+.++++++.++++++++|++.+++.-. +.+.+++..+ .. -++..+|
T Consensus 64 ~aD~VivavPi~---------------~~~~~l~~l~~~l~~g~iv~Dv~S~K~~----v~~a~~~~~~~~~-~~vg~HP 123 (279)
T COG0287 64 EADLVIVAVPIE---------------ATEEVLKELAPHLKKGAIVTDVGSVKSS----VVEAMEKYLPGDV-RFVGGHP 123 (279)
T ss_pred cCCEEEEeccHH---------------HHHHHHHHhcccCCCCCEEEecccccHH----HHHHHHHhccCCC-eeEecCC
Confidence 899999999842 4678889999999999999875544333 3333333322 12 3577788
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (362)
=+..+ +..+++.+..+|+- +....+.+.++.+.++|+..+ ..++.++++.
T Consensus 124 M~G~~--~~~~lf~~~~~vlt-p~~~~~~~~~~~~~~~~~~~g--a~~v~~~~ee 173 (279)
T COG0287 124 MFGPE--ADAGLFENAVVVLT-PSEGTEKEWVEEVKRLWEALG--ARLVEMDAEE 173 (279)
T ss_pred CCCCc--ccccccCCCEEEEc-CCCCCCHHHHHHHHHHHHHcC--CEEEEcChHH
Confidence 55443 34456666666654 444334678999999999986 4677787765
No 73
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.51 E-value=3e-12 Score=118.20 Aligned_cols=197 Identities=16% Similarity=0.166 Sum_probs=125.4
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS---IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G---~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
||+|+|||+|.||..++..|.++ | ++|++||+++++.+.+.+.. ++..+++.++++.
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~--g~~~~~v~v~~r~~~~~~~~~~~~------------------g~~~~~~~~~~~~ 61 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS--GVPAKDIIVSDPSPEKRAALAEEY------------------GVRAATDNQEAAQ 61 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC--CCCcceEEEEcCCHHHHHHHHHhc------------------CCeecCChHHHHh
Confidence 68999999999999999999988 7 78999999999988776520 1344566777788
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE-eeCCccccHHHHHHHHHhccCCCceEEeeCC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGIKFQILSNP 156 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~-~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P 156 (362)
++|+||+|+|.. .+.++++.+.+++ +++|+. .+.++ .+.+.+.+.. +.. .+-.+|
T Consensus 62 ~advVil~v~~~---------------~~~~v~~~l~~~~--~~~vvs~~~gi~---~~~l~~~~~~---~~~-iv~~~P 117 (267)
T PRK11880 62 EADVVVLAVKPQ---------------VMEEVLSELKGQL--DKLVVSIAAGVT---LARLERLLGA---DLP-VVRAMP 117 (267)
T ss_pred cCCEEEEEcCHH---------------HHHHHHHHHHhhc--CCEEEEecCCCC---HHHHHHhcCC---CCc-EEEecC
Confidence 999999999732 4678888888776 345443 22232 2344444331 112 233555
Q ss_pred cccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHH-HHHhHHHHHHHHHHHHHHH
Q 017997 157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSK-LAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 157 e~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~K-l~~N~~~~~~ia~~nE~~~ 235 (362)
.... .+......+.-+ ...+++..+.++.+|+.++ ..+...+...-+..= +..+. -+....++..+..
T Consensus 118 ~~p~------~~~~~~~~i~~~--~~~~~~~~~~v~~l~~~lG--~~~~~~~e~~~d~~~a~~~~~-pa~~~~~~~~~~~ 186 (267)
T PRK11880 118 NTPA------LVGAGMTALTAN--ALVSAEDRELVENLLSAFG--KVVWVDDEKQMDAVTAVSGSG-PAYVFLFIEALAD 186 (267)
T ss_pred CchH------HHcCceEEEecC--CCCCHHHHHHHHHHHHhCC--eEEEECChHhcchHHHHhcCh-HHHHHHHHHHHHH
Confidence 3211 011111222222 2235788999999999987 355555433222222 22221 2233567788888
Q ss_pred HHHHhCCCHHHHHHHhc
Q 017997 236 LCEATGANVSQVAFAVG 252 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~ 252 (362)
.+.+.|++.++..+++.
T Consensus 187 ~~~~~Gl~~~~a~~~~~ 203 (267)
T PRK11880 187 AGVKLGLPREQARKLAA 203 (267)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 88989999988777654
No 74
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.51 E-value=2.2e-12 Score=123.99 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=113.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||.++|..|.++ |++|.+|+++++..+......... .-..++++++++++||+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~aDl 63 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLARALGFGV---------------IDELAADLQRAAAEADL 63 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHhcCCC---------------CcccccCHHHHhcCCCE
Confidence 4899999999999999999999 899999998877655433211100 01234567777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC----
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP---- 156 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~-~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P---- 156 (362)
||+|||.. .+.++++++.+ .++++.+|++.+++.....+.+...+.. +.. ++..+|
T Consensus 64 VilavP~~---------------~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~---~~~-~ig~HPMaG~ 124 (359)
T PRK06545 64 IVLAVPVD---------------ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGD---LIR-FVGGHPMAGS 124 (359)
T ss_pred EEEeCCHH---------------HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC---CCe-EEeeCCcCcC
Confidence 99999842 35778888887 4788888888777766555555443222 112 444566
Q ss_pred cccccCccccccCCC-CeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH-HHHHHHH
Q 017997 157 EFLAEGTAIQDLFNP-DRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS-AELSKLA 218 (362)
Q Consensus 157 e~~~~g~a~~~~~~~-~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-ae~~Kl~ 218 (362)
|+.++..+..+++.. ..++..+. ..+++..+.++++++.++ ..+..++... ..++.++
T Consensus 125 e~sG~~aa~~~lf~g~~~il~~~~--~~~~~~~~~v~~l~~~lG--a~~v~~~~~~HD~~~A~v 184 (359)
T PRK06545 125 HKSGVAAARADLFENAPWVLTPDD--HTDPDAVAELKDLLSGTG--AKFVVLDAEEHDRAVALV 184 (359)
T ss_pred chhhHHHhcHHHHCCCcEEEecCC--CCCHHHHHHHHHHHHHcC--CEEEECCHHHHhHHHhHh
Confidence 333333344444433 34443322 225788999999999986 3555555433 3344433
No 75
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.49 E-value=3.8e-12 Score=117.59 Aligned_cols=197 Identities=19% Similarity=0.207 Sum_probs=122.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC----eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI----EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~----~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|||+|||+|.||.+|+..|.++ |+ +|+++|+++++++.+.+. ..+..+++..++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~--g~~~~~~I~v~~r~~~~~~~l~~~------------------~g~~~~~~~~e~~~ 62 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK--NIVSPDQIICSDLNVSNLKNASDK------------------YGITITTNNNEVAN 62 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCCCCceEEEECCCHHHHHHHHHh------------------cCcEEeCCcHHHHh
Confidence 6999999999999999999987 54 799999999998877541 01345667777788
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+||+||| |. .+.++++++.++++++++|| |-...-+.+.+++.+... .. .+
T Consensus 63 ~aDiIiLavk-P~--------------~~~~vl~~l~~~~~~~~lvI--Si~AGi~i~~l~~~l~~~---~~-vv----- 116 (272)
T PRK12491 63 SADILILSIK-PD--------------LYSSVINQIKDQIKNDVIVV--TIAAGKSIKSTENEFDRK---LK-VI----- 116 (272)
T ss_pred hCCEEEEEeC-hH--------------HHHHHHHHHHHhhcCCcEEE--EeCCCCcHHHHHHhcCCC---Cc-EE-----
Confidence 9999999998 42 46788889988888887765 333333456666655421 11 12
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHH--HHhHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKL--AANAFLAQRISSVNAMSA 235 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl--~~N~~~~~~ia~~nE~~~ 235 (362)
|..|-.+..-.... ..+..+ +..+++..+.++.+|+.++. .+... +.++--+ +.-+-=+....++..+..
T Consensus 117 R~MPN~~~~vg~g~-t~~~~~--~~~~~~~~~~v~~lf~~~G~--~~~~~---E~~~d~~talsgsgPAf~~~~~eal~~ 188 (272)
T PRK12491 117 RVMPNTPVLVGEGM-SALCFN--EMVTEKDIKEVLNIFNIFGQ--TEVVN---EKLMDVVTSISGSSPAYVYMFIEAMAD 188 (272)
T ss_pred EECCChHHHHcCce-EEEEeC--CCCCHHHHHHHHHHHHcCCC--EEEEc---HHHhhhHHHhccCcHHHHHHHHHHHHH
Confidence 22222221111111 222222 22346678899999999873 44332 1111110 111111234456667777
Q ss_pred HHHHhCCCHHHHHHHhc
Q 017997 236 LCEATGANVSQVAFAVG 252 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~ 252 (362)
.+.+.|++.++..+++.
T Consensus 189 a~v~~Gl~~~~A~~l~~ 205 (272)
T PRK12491 189 AAVLGGMPRKQAYKFAA 205 (272)
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 78888888877766554
No 76
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.46 E-value=1.6e-11 Score=115.17 Aligned_cols=208 Identities=22% Similarity=0.221 Sum_probs=142.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|||+|+|+|.||+-+|..|+++ |++|+++-|++. ++++++.+..+.+..-.. .....+.+..+....+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~--g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~-------~~~~~~~~~~~~~~~~Dl 70 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA--GHDVTLLVRSRR-LEALKKKGLRIEDEGGNF-------TTPVVAATDAEALGPADL 70 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCeEEEEecHHH-HHHHHhCCeEEecCCCcc-------ccccccccChhhcCCCCE
Confidence 8999999999999999999999 889999988766 899998766655433210 011222222334779999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhcc--CCCceEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS--KGIKFQILSNPEFL 159 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~--~g~~~~v~~~Pe~~ 159 (362)
||++|++. ++.++++.+.+.+++.+.|+. -....|..+.+.+...+.. .| .+.++-.+-
T Consensus 71 viv~vKa~---------------q~~~al~~l~~~~~~~t~vl~-lqNG~g~~e~l~~~~~~~~il~G---~~~~~a~~~ 131 (307)
T COG1893 71 VIVTVKAY---------------QLEEALPSLAPLLGPNTVVLF-LQNGLGHEEELRKILPKETVLGG---VTTHGAVRE 131 (307)
T ss_pred EEEEeccc---------------cHHHHHHHhhhcCCCCcEEEE-EeCCCcHHHHHHHhCCcceEEEE---EeeeeeEec
Confidence 99999864 257899999999999887653 2345566666665555431 12 122333444
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH------------------
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA------------------ 221 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~------------------ 221 (362)
.+|...+.- ...+.+|..+.. .++..+.+.++|+...- ...+..|+....|.|++-|+
T Consensus 132 ~~g~v~~~g--~g~~~ig~~~~~-~~~~~~~i~~~~~~a~~-~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~ 207 (307)
T COG1893 132 GPGHVVHTG--LGDTVIGELRGG-RDELVKALAELFKEAGL-EVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLE 207 (307)
T ss_pred CCceEEEec--CCcEEEccCCCC-chHHHHHHHHHHHhCCC-CeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhc
Confidence 566654332 224556765432 13567778888876542 23345799999999999887
Q ss_pred ---HHHHHHHHHHHHHHHHHHhCC
Q 017997 222 ---FLAQRISSVNAMSALCEATGA 242 (362)
Q Consensus 222 ---~~~~~ia~~nE~~~l~~~~g~ 242 (362)
.+.+..+.+.|....+...|+
T Consensus 208 ~~~~~~l~~~~~~E~~~v~~~~g~ 231 (307)
T COG1893 208 NPEARALIRALVAEVVAVARAEGV 231 (307)
T ss_pred ChhHHHHHHHHHHHHHHHHHhccC
Confidence 457778899999999999883
No 77
>PLN02256 arogenate dehydrogenase
Probab=99.45 E-value=7.1e-11 Score=110.63 Aligned_cols=165 Identities=14% Similarity=0.132 Sum_probs=105.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (362)
|+|+|||+|.||.++|..|.+. |++|++||+++.. +...+- ++...++.++++ .++|
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~~-~~a~~~-------------------gv~~~~~~~e~~~~~aD 94 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDYS-DIAAEL-------------------GVSFFRDPDDFCEEHPD 94 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccHH-HHHHHc-------------------CCeeeCCHHHHhhCCCC
Confidence 7999999999999999999988 8999999998642 222210 123456666655 4799
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHH-HhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVI-ADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i-~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
+||+|||.. .+.++++++ .++++++++|++.+++.....+.+.+.+.. +.. ++..+|-+.
T Consensus 95 vVilavp~~---------------~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~---~~~-~V~~HPmaG 155 (304)
T PLN02256 95 VVLLCTSIL---------------STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE---EFD-ILCTHPMFG 155 (304)
T ss_pred EEEEecCHH---------------HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC---CCe-EEecCCCCC
Confidence 999998842 357777888 567888998887665543334444433322 222 577788554
Q ss_pred ccCccccccCCCCeEEEecC---CCcchHHHHHHHHHHHhccCCCCcEEeCChhH
Q 017997 160 AEGTAIQDLFNPDRVLIGGR---ETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (362)
.+... ..+... .+++... ....+++..+.++++++.++ ..+..++++.
T Consensus 156 ~e~~~-~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~l~~~lG--a~v~~~~~ee 206 (304)
T PLN02256 156 PESGK-GGWAGL-PFVYDKVRIGDEGEREARCERFLDIFEEEG--CRMVEMSCEE 206 (304)
T ss_pred CCCCc-cccCCC-eEEEecceecCCCCCHHHHHHHHHHHHHCC--CEEEEeCHHH
Confidence 43221 011111 2323221 01124678899999999986 4677777765
No 78
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.44 E-value=2.8e-12 Score=120.72 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHH-------HHHHHcCC----CCCCCCC-hHHHHhhhcCCCEEEecC--HHhhhc
Q 017997 12 VGGPTMAVIALKCPSIEVAVVDISVSR-------INAWNSDQ----LPIYEPG-LDGVVKQCRGKNLFFSTD--VEKHVS 77 (362)
Q Consensus 12 ~G~~lA~~la~~~~G~~V~~~d~~~~~-------~~~l~~~~----~~~~e~~-l~~~~~~~~~~~l~~t~d--~~~a~~ 77 (362)
||..+|..++.+ |++|++||++++. ++...+.. ....+.+ +.+--......+++++++ +.++++
T Consensus 1 MG~giA~~~a~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~ 78 (314)
T PRK08269 1 MGQGIALAFAFA--GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA 78 (314)
T ss_pred CcHHHHHHHHhC--CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence 799999999999 9999999999853 22111100 0000000 000000012356888765 667789
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC--CCceEEeeC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK--GIKFQILSN 155 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~--g~~~~v~~~ 155 (362)
+||+||.|||... +++ ...+.++.+.+++++++ .||.++-....+...+..... |.+| ++
T Consensus 79 ~aD~ViEav~E~~-----------~~K--~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf---~~ 140 (314)
T PRK08269 79 DADLVFEAVPEVL-----------DAK--REALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHW---LN 140 (314)
T ss_pred cCCEEEECCcCCH-----------HHH--HHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEec---CC
Confidence 9999999998632 333 66788899999999887 244333344455443322111 2222 23
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
|.+..+ ...| +++..+ ++++++++.++++.++ +.++++.+... .+ ...+..++++|...
T Consensus 141 Pp~~~~---------lvEV-v~g~~t--~~e~~~~~~~ll~~lG-k~~v~v~d~~G-----fi---~nri~~~~l~EAl~ 199 (314)
T PRK08269 141 PAYLMP---------LVEV-SPSDAT--DPAVVDRLAALLERIG-KVPVVCGPSPG-----YI---VPRIQALAMNEAAR 199 (314)
T ss_pred ccccCc---------eEEE-eCCCCC--CHHHHHHHHHHHHHcC-CcEEEecCCCC-----cc---hHHHHHHHHHHHHH
Confidence 333322 1124 465544 6899999999999987 35676666432 23 34467899999999
Q ss_pred HHHHhCCCHHHHHHHhcCC
Q 017997 236 LCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 236 l~~~~g~d~~~v~~~~~~~ 254 (362)
++++.++|++++.+++...
T Consensus 200 l~e~g~~~~e~iD~a~~~g 218 (314)
T PRK08269 200 MVEEGVASAEDIDKAIRTG 218 (314)
T ss_pred HHHhCCCCHHHHHHHHHhC
Confidence 9999999999999998754
No 79
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.43 E-value=1.5e-11 Score=112.94 Aligned_cols=190 Identities=14% Similarity=0.186 Sum_probs=121.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIE---VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~---V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|||+|||+|.||.+++..|.+. |+. +.+|++++++.+.+.+.. +....+++..+++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~--g~~~~~i~v~~r~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~ 61 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS--PADVSEIIVSPRNAQIAARLAERF-----------------PKVRIAKDNQAVVDR 61 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCChheEEEECCCHHHHHHHHHHc-----------------CCceEeCCHHHHHHh
Confidence 6999999999999999999988 654 588999999888765421 124556777777889
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEF 158 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~ 158 (362)
+|+||+|+| |. .+.++++++. +.++++|+. +..+-+.+.+.+.++... . .+-..|..
T Consensus 62 aDvVilav~-p~--------------~~~~vl~~l~--~~~~~~vis--~~ag~~~~~l~~~~~~~~---~-~~r~~P~~ 118 (258)
T PRK06476 62 SDVVFLAVR-PQ--------------IAEEVLRALR--FRPGQTVIS--VIAATDRAALLEWIGHDV---K-LVRAIPLP 118 (258)
T ss_pred CCEEEEEeC-HH--------------HHHHHHHHhc--cCCCCEEEE--ECCCCCHHHHHHHhCCCC---C-EEEECCCC
Confidence 999999998 42 3466666652 457777764 445556677777664321 1 23345542
Q ss_pred cccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHH-HHhHHHHHHHHHHHHHHHHH
Q 017997 159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKL-AANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 159 ~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl-~~N~~~~~~ia~~nE~~~l~ 237 (362)
.. . ..... ..+.++ . +.++++|+.++. .+...+... .-.+ +..++.+....++.++..++
T Consensus 119 ~~--a---~~~g~-t~~~~~------~---~~~~~l~~~lG~--~~~~~~e~~--~d~~~a~~s~~a~~~~~~~~~~~~~ 179 (258)
T PRK06476 119 FV--A---ERKGV-TAIYPP------D---PFVAALFDALGT--AVECDSEEE--YDLLAAASALMATYFGILETATGWL 179 (258)
T ss_pred hh--h---hCCCC-eEecCC------H---HHHHHHHHhcCC--cEEECChHh--ccceeehhccHHHHHHHHHHHHHHH
Confidence 11 1 11111 222221 1 478899999873 444443211 1111 00124444556889999999
Q ss_pred HHhCCCHHHHHHHhc
Q 017997 238 EATGANVSQVAFAVG 252 (362)
Q Consensus 238 ~~~g~d~~~v~~~~~ 252 (362)
++.|+|.++..+++.
T Consensus 180 ~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 180 EEQGLKRQKARAYLA 194 (258)
T ss_pred HHcCCCHHHHHHHHH
Confidence 999999988888765
No 80
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.43 E-value=4.9e-11 Score=114.00 Aligned_cols=156 Identities=10% Similarity=0.064 Sum_probs=104.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+ |.||.++|..|.+.. +++|+++|++.+ ..+++.+++++||
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~------------------------------~~~~~~~~v~~aD 53 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP------------------------------GSLDPATLLQRAD 53 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc------------------------------ccCCHHHHhcCCC
Confidence 58999999 999999999999753 899999998410 1234566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh---cCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV---SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~---l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
+||+|+|. +.+.+.++++.++ ++++++|++.+++.....+.+ + +.. .. ++..||=
T Consensus 54 lVilavPv---------------~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~-~~~--~~-fVG~HPM 111 (370)
T PRK08818 54 VLIFSAPI---------------RHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---L-ASQ--AE-VVGLHPM 111 (370)
T ss_pred EEEEeCCH---------------HHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---H-hcC--CC-EEeeCCC
Confidence 99999874 2467788888876 789999988655543322222 2 221 23 6788886
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHH-HHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSA-ELSKLA 218 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a-e~~Kl~ 218 (362)
+..+.. +.+....+++-.. . ..+..+.++++++.++ ..+..++++.- +++-++
T Consensus 112 aG~E~s---~lf~g~~~iltp~-~--~~~~~~~v~~l~~~~G--a~v~~~~aeeHD~~~A~v 165 (370)
T PRK08818 112 TAPPKS---PTLKGRVMVVCEA-R--LQHWSPWVQSLCSALQ--AECVYATPEHHDRVMALV 165 (370)
T ss_pred CCCCCC---cccCCCeEEEeCC-C--chhHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHH
Confidence 554433 2344444544422 2 2455778899999886 46777887653 344444
No 81
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.41 E-value=6.9e-12 Score=117.95 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=134.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|+|+|.||+.+|..|++. |++|++++|++++++++++ ++..+...+-.... .... .+.+. ...+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~------~~~~-~~~~~-~~~~D 72 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLY------AIPA-ETADA-AEPIH 72 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCcceee------ccCC-CCccc-ccccC
Confidence 8999999999999999999998 9999999999999999975 33333222110000 0111 11222 46889
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEe-eCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL-SNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~-~~Pe~~ 159 (362)
+||+||++. ++.++++.+.+++.+++.|+. -....+..+.+.+.+.+... -..+. .+..+.
T Consensus 73 ~viv~vK~~---------------~~~~al~~l~~~l~~~t~vv~-lQNGv~~~e~l~~~~~~~~v--~~g~~~~ga~~~ 134 (305)
T PRK05708 73 RLLLACKAY---------------DAEPAVASLAHRLAPGAELLL-LQNGLGSQDAVAARVPHARC--IFASSTEGAFRD 134 (305)
T ss_pred EEEEECCHH---------------hHHHHHHHHHhhCCCCCEEEE-EeCCCCCHHHHHHhCCCCcE--EEEEeeeceecC
Confidence 999999853 246788999999998887653 34445555666665543210 01122 233445
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHH----------------
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFL---------------- 223 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~---------------- 223 (362)
.||...+.... .+.+|... .+..+.+.++|...+. ......|+...-|.|++-|+..
T Consensus 135 ~pg~v~~~~~g--~~~~G~~~----~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~ 207 (305)
T PRK05708 135 GDWRVVFAGHG--FTWLGDPR----NPTAPAWLDDLREAGI-PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLE 207 (305)
T ss_pred CCCEEEEeceE--EEEEcCCC----CcchHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhc
Confidence 66765443221 24467442 2345667778876531 2234568999999999988721
Q ss_pred --HHHHHHHHHHHHHHHHhCCC
Q 017997 224 --AQRISSVNAMSALCEATGAN 243 (362)
Q Consensus 224 --~~~ia~~nE~~~l~~~~g~d 243 (362)
....+++.|+..++++.|++
T Consensus 208 ~~~~~~~l~~E~~~va~a~G~~ 229 (305)
T PRK05708 208 HAQEVAALCAELSELLRRCGQP 229 (305)
T ss_pred CHHHHHHHHHHHHHHHHHcCCC
Confidence 23457889999999999865
No 82
>PRK07680 late competence protein ComER; Validated
Probab=99.41 E-value=2.6e-11 Score=112.40 Aligned_cols=153 Identities=12% Similarity=0.233 Sum_probs=101.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G----~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
|+|+|||+|.||.+++..|.++ | ++|++||+++++.+.+.+.. ..+..+.+..+++.
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~--g~~~~~~v~v~~r~~~~~~~~~~~~-----------------~g~~~~~~~~~~~~ 61 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES--GAVKPSQLTITNRTPAKAYHIKERY-----------------PGIHVAKTIEEVIS 61 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCHHHHHHHHHHc-----------------CCeEEECCHHHHHH
Confidence 7999999999999999999988 6 47999999999887765410 12456677777789
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
++|+||+|||. ..+.++++++.++++++++|+..+. .-+.+.+.+.+... .+-+.|.
T Consensus 62 ~aDiVilav~p---------------~~~~~vl~~l~~~l~~~~~iis~~a--g~~~~~L~~~~~~~------~~r~~p~ 118 (273)
T PRK07680 62 QSDLIFICVKP---------------LDIYPLLQKLAPHLTDEHCLVSITS--PISVEQLETLVPCQ------VARIIPS 118 (273)
T ss_pred hCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEECC--CCCHHHHHHHcCCC------EEEECCC
Confidence 99999999973 1357888889888888887775442 12455665554321 1223442
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEe
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILT 206 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (362)
.. ..+..+. ..++.|... +++..+.++++|+.++ ..+..
T Consensus 119 ~~--~~~~~G~---t~~~~g~~~---~~~~~~~~~~ll~~~G--~~~~i 157 (273)
T PRK07680 119 IT--NRALSGA---SLFTFGSRC---SEEDQQKLERLFSNIS--TPLVI 157 (273)
T ss_pred hH--HHHhhcc---EEEeeCCCC---CHHHHHHHHHHHHcCC--CEEEE
Confidence 11 1111111 123334221 3567789999999987 34444
No 83
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.39 E-value=8.9e-13 Score=114.01 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=146.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-----------CCCCCCChHHHHhhhcCCCEEEec
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-----------LPIYEPGLDGVVKQCRGKNLFFST 70 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~-----------~~~~e~~l~~~~~~~~~~~l~~t~ 70 (362)
.+|+|||.|.||+.+|+.-+.. |++|+++|.|++.+.+..++. .--.+..+++++.. ...+++.++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s--g~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~-~l~ri~~~t 88 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS--GLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDD-TLDRIKTST 88 (298)
T ss_pred cceEEEcccccchhHHHHHHhc--CCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHH-HHHHHHHcC
Confidence 5799999999999999999999 999999999998877554321 00111224444432 124577889
Q ss_pred CHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccHHHHHHHHHhccC--C
Q 017997 71 DVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTAEAIEKILTHNSK--G 147 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~~~l~~~l~~~~~--g 147 (362)
|..++++++|+||.++-. +.|++ +..+++|...+++.+++ .++|++.. ..+...+..... |
T Consensus 89 nv~~~v~dadliiEAivE-----------n~diK--~~lF~~l~~~ak~~~il~tNTSSl~l---t~ia~~~~~~srf~G 152 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVE-----------NLDIK--RKLFKDLDKIAKSSTILATNTSSLSL---TDIASATQRPSRFAG 152 (298)
T ss_pred CHHHhhhhhHHHHHHHHH-----------hHHHH--HHHHHHHHhhcccceEEeecccceeH---HHHHhhccChhhhce
Confidence 999999999999999754 34554 78889999999888877 44554432 223333332222 5
Q ss_pred CceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHH
Q 017997 148 IKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRI 227 (362)
Q Consensus 148 ~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~i 227 (362)
.+| ++|..+. +...|| -++++ ++++...+..+-+.++ +.++...|. ..++.|. +.+
T Consensus 153 lHF---fNPvPvM---------KLvEVi-r~~~T--S~eTf~~l~~f~k~~g-KttVackDt-----pGFIVNR---lLi 208 (298)
T KOG2304|consen 153 LHF---FNPVPVM---------KLVEVI-RTDDT--SDETFNALVDFGKAVG-KTTVACKDT-----PGFIVNR---LLI 208 (298)
T ss_pred eec---cCCchhH---------HHhhhh-cCCCC--CHHHHHHHHHHHHHhC-CCceeecCC-----CchhhhH---HHH
Confidence 555 5665442 222354 44444 6889999998888887 356655442 2467777 468
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHhcCCC
Q 017997 228 SSVNAMSALCEATGANVSQVAFAVGTDS 255 (362)
Q Consensus 228 a~~nE~~~l~~~~g~d~~~v~~~~~~~~ 255 (362)
-+++|..++.++..+..+++..++....
T Consensus 209 Pyl~ea~r~yerGdAskeDIDtaMklGa 236 (298)
T KOG2304|consen 209 PYLMEAIRMYERGDASKEDIDTAMKLGA 236 (298)
T ss_pred HHHHHHHHHHHhcCCcHhhHHHHHhccC
Confidence 9999999999999999999999997653
No 84
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.36 E-value=5.4e-11 Score=124.96 Aligned_cols=170 Identities=17% Similarity=0.187 Sum_probs=116.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
.||+|||+|.||.++|..|.+. | ++|++||+++++++.+.+.... ...+++..++++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~--G~~~~V~~~d~~~~~~~~a~~~g~~-----------------~~~~~~~~~~~~~a 64 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER--GLAREVVAVDRRAKSLELAVSLGVI-----------------DRGEEDLAEAVSGA 64 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc--CCCCEEEEEECChhHHHHHHHCCCC-----------------CcccCCHHHHhcCC
Confidence 6899999999999999999998 6 5899999999988776542110 11235666778999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|+|. ..+.++++.+.++++++.+|++.+++.....+.+.+.+... ... ++..+|-..
T Consensus 65 DvVilavp~---------------~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~--~~r-~~~~hPm~G 126 (735)
T PRK14806 65 DVIVLAVPV---------------LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGEL--PAG-FVPGHPIAG 126 (735)
T ss_pred CEEEECCCH---------------HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhcccc--CCe-EEecCCcCc
Confidence 999999984 24678888999988888898888888777777766655431 112 456677442
Q ss_pred ccC----ccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH
Q 017997 160 AEG----TAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (362)
Q Consensus 160 ~~g----~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (362)
.++ .+..+++....+++-. ....+++..+.++++|+.++ .++...+...
T Consensus 127 ~~~~g~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~G--~~~~~~~~~~ 179 (735)
T PRK14806 127 SEKSGVHAANADLFRNHKVILTP-LAETDPAALARVDRLWRAVG--ADVLHMDVAH 179 (735)
T ss_pred CCcchhhhhhhHHhCCCeEEEEC-CCCCCHHHHHHHHHHHHHcC--CEEEEcCHHH
Confidence 222 1222334333333332 22234678899999999986 3555565443
No 85
>PLN02712 arogenate dehydrogenase
Probab=99.31 E-value=9.2e-10 Score=113.30 Aligned_cols=165 Identities=14% Similarity=0.169 Sum_probs=105.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-CCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-EAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-~aD 80 (362)
|||+|||+|.||.++|..|.+. |++|++||++... +...+- + +...++.++++. .+|
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~--G~~V~~~dr~~~~-~~a~~~------------------G-v~~~~~~~el~~~~aD 427 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQ--GHTVLAYSRSDYS-DEAQKL------------------G-VSYFSDADDLCEEHPE 427 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHC--cCEEEEEECChHH-HHHHHc------------------C-CeEeCCHHHHHhcCCC
Confidence 7999999999999999999988 8999999998643 322220 1 334567777554 589
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~-~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
+||+|||.. .+.++++++.. .++++++|++.+++.....+.+.+.+.. +.. ++..+|-+.
T Consensus 428 vVILavP~~---------------~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~---~~~-~v~~HPm~G 488 (667)
T PLN02712 428 VILLCTSIL---------------STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ---DFD-ILCTHPMFG 488 (667)
T ss_pred EEEECCChH---------------HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC---CCc-eEeeCCCCC
Confidence 999999842 34666777765 5788999998777653333444333322 223 466777554
Q ss_pred ccCc-----cccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHH
Q 017997 160 AEGT-----AIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAE 213 (362)
Q Consensus 160 ~~g~-----a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae 213 (362)
.+.. ....++.+ ++++++.. ..+.++.+.++|+.++ .+++.++++.-.
T Consensus 489 ~e~~~~G~~~~~~lf~~--~~v~~~~~--~~~~~~~l~~l~~~lG--a~vv~ms~eeHD 541 (667)
T PLN02712 489 PESGKNGWNNLAFVFDK--VRIGSDDR--RVSRCDSFLDIFAREG--CRMVEMSCAEHD 541 (667)
T ss_pred ccccccchhhhhhhccC--cEeCCCcc--hHHHHHHHHHHHHHcC--CEEEEeCHHHHH
Confidence 4321 12223333 23444321 3455667778999886 467777776643
No 86
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.30 E-value=1.5e-10 Score=107.44 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=95.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS----IEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G----~~V~~~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
||||+|||+|.||.+++..|.++ | ++|++|++++ ++.+.+.+. .+....+++..++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~--g~~~~~~V~~~~r~~~~~~~~l~~~-----------------~~~~~~~~~~~e~ 61 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET--EVATPEEIILYSSSKNEHFNQLYDK-----------------YPTVELADNEAEI 61 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC--CCCCcccEEEEeCCcHHHHHHHHHH-----------------cCCeEEeCCHHHH
Confidence 78999999999999999999988 6 7999999864 445554331 0123456677777
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc-HHHHHHHHHhccCCCceEEee
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT-AEAIEKILTHNSKGIKFQILS 154 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt-~~~l~~~l~~~~~g~~~~v~~ 154 (362)
++++|+||+|+|.. .+.++++++.++++++++|+. +..|. .+.+++.++.. . .+
T Consensus 62 ~~~aDvVilavpp~---------------~~~~vl~~l~~~l~~~~~ivS---~~aGi~~~~l~~~~~~~----~-vv-- 116 (277)
T PRK06928 62 FTKCDHSFICVPPL---------------AVLPLLKDCAPVLTPDRHVVS---IAAGVSLDDLLEITPGL----Q-VS-- 116 (277)
T ss_pred HhhCCEEEEecCHH---------------HHHHHHHHHHhhcCCCCEEEE---ECCCCCHHHHHHHcCCC----C-EE--
Confidence 89999999999832 467888889888887776653 22333 34565554321 1 11
Q ss_pred CCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccC
Q 017997 155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWV 199 (362)
Q Consensus 155 ~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~ 199 (362)
|..|-.+..- ......+..+ +..+++..+.++.+|+.++
T Consensus 117 ---R~MPN~~~~~-g~g~t~~~~~--~~~~~~~~~~v~~l~~~~G 155 (277)
T PRK06928 117 ---RLIPSLTSAV-GVGTSLVAHA--ETVNEANKSRLEETLSHFS 155 (277)
T ss_pred ---EEeCccHHHH-hhhcEEEecC--CCCCHHHHHHHHHHHHhCC
Confidence 2222221111 1111222222 2234677889999999986
No 87
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.29 E-value=5.3e-10 Score=101.83 Aligned_cols=194 Identities=17% Similarity=0.174 Sum_probs=117.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC---Ce-EEEEeC-CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS---IE-VAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G---~~-V~~~d~-~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
|||+|||+|.||.+++..|+++ | .+ ++++++ ++++.+.+.+. -++..+++.++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~--~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 64 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT--SKEYIEEIIVSNRSNVEKLDQLQAR------------------YNVSTTTDWKQHV 64 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCCCcCeEEEECCCCHHHHHHHHHH------------------cCcEEeCChHHHH
Confidence 4799999999999999999987 4 23 778887 57777776542 1244567788888
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSN 155 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~ 155 (362)
+++|+||+|+|.. .+.++++++.++++ +++|+..+. ++ .+.+++.+.. +.. .+-.+
T Consensus 65 ~~~DiViiavp~~---------------~~~~v~~~l~~~~~-~~~vis~~~gi~---~~~l~~~~~~---~~~-v~r~~ 121 (245)
T PRK07634 65 TSVDTIVLAMPPS---------------AHEELLAELSPLLS-NQLVVTVAAGIG---PSYLEERLPK---GTP-VAWIM 121 (245)
T ss_pred hcCCEEEEecCHH---------------HHHHHHHHHHhhcc-CCEEEEECCCCC---HHHHHHHcCC---CCe-EEEEC
Confidence 9999999998842 35777888887766 456654322 32 2345444432 112 23456
Q ss_pred CcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHH---hHHHHHHHHHHHH
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAA---NAFLAQRISSVNA 232 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~---N~~~~~~ia~~nE 232 (362)
|....+-. ...+.+..+. ..+++..+.++++|+.++. .+... +.+ ...+. -+--+....++..
T Consensus 122 Pn~a~~v~-----~g~~~~~~~~---~~~~~~~~~v~~lf~~~G~--~~~~~---e~~-~~~~~a~~gs~pa~~~~~~~a 187 (245)
T PRK07634 122 PNTAAEIG-----KSISLYTMGQ---SVNETHKETLQLILKGIGT--SQLCT---EEE-VHQLTAVTGSAPAFLYYFAES 187 (245)
T ss_pred CcHHHHHh-----cCCeEEeeCC---CCCHHHHHHHHHHHHhCCC--EEEEC---HHH-cchHHhhhcchHHHHHHHHHH
Confidence 75432211 1111222222 2257888999999999973 44432 111 11111 0111123345556
Q ss_pred HHHHHHHhCCCHHHHHHHhc
Q 017997 233 MSALCEATGANVSQVAFAVG 252 (362)
Q Consensus 233 ~~~l~~~~g~d~~~v~~~~~ 252 (362)
+...+.+.|++.++-.+++.
T Consensus 188 ~~~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 188 LIEATKSYGVDEETAKHLVI 207 (245)
T ss_pred HHHHHHHcCCCHHHHHHHHH
Confidence 77778888999888777665
No 88
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.29 E-value=3.9e-10 Score=102.60 Aligned_cols=196 Identities=19% Similarity=0.250 Sum_probs=125.0
Q ss_pred CceEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~--~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
||||+|||+|.||.+|+..|.+++ +..+|++.++++++.+.+.+.. +.. .+++..+++.+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-----------------g~~-~~~~~~~~~~~ 62 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-----------------GVV-TTTDNQEAVEE 62 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-----------------CCc-ccCcHHHHHhh
Confidence 689999999999999999999982 1279999999999998655420 111 26777778899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEe-eCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL-SNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~-~~Pe 157 (362)
+|+||+||+ |. .+.++++.+.+ ..++++|| |-...-+.+.+...+... .++ ..|.
T Consensus 63 advv~LavK-Pq--------------~~~~vl~~l~~-~~~~~lvI--SiaAGv~~~~l~~~l~~~------~vvR~MPN 118 (266)
T COG0345 63 ADVVFLAVK-PQ--------------DLEEVLSKLKP-LTKDKLVI--SIAAGVSIETLERLLGGL------RVVRVMPN 118 (266)
T ss_pred CCEEEEEeC-hH--------------hHHHHHHHhhc-ccCCCEEE--EEeCCCCHHHHHHHcCCC------ceEEeCCC
Confidence 999999998 42 35778888887 66777776 333333456676666521 111 1232
Q ss_pred ---ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHH
Q 017997 158 ---FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMS 234 (362)
Q Consensus 158 ---~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~ 234 (362)
.++.|. ..+..+ ...+++..+.+..+|+.++ ..+.+..-.---++-+...+ =+....++..+.
T Consensus 119 t~a~vg~g~---------t~i~~~--~~~~~~~~~~v~~l~~~~G--~v~~v~E~~~da~TaisGSg-PAyv~~~iEal~ 184 (266)
T COG0345 119 TPALVGAGV---------TAISAN--ANVSEEDKAFVEALLSAVG--KVVEVEESLMDAVTALSGSG-PAYVFLFIEALA 184 (266)
T ss_pred hHHHHcCcc---------eeeecC--ccCCHHHHHHHHHHHHhcC--CeEEechHHhhHHHHHhcCC-HHHHHHHHHHHH
Confidence 222221 122222 2235777889999999997 34444321111122222211 122335677788
Q ss_pred HHHHHhCCCHHHHHHHhc
Q 017997 235 ALCEATGANVSQVAFAVG 252 (362)
Q Consensus 235 ~l~~~~g~d~~~v~~~~~ 252 (362)
..+.+.|++.++..+++.
T Consensus 185 ~agv~~Gl~~~~A~~l~~ 202 (266)
T COG0345 185 DAGVRLGLPREEARELAA 202 (266)
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 888899999888777654
No 89
>PLN02712 arogenate dehydrogenase
Probab=99.28 E-value=2.5e-09 Score=110.17 Aligned_cols=165 Identities=16% Similarity=0.127 Sum_probs=104.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aD 80 (362)
|+|+|||+|.||..+|..|.+. |++|++||++... +...+ -++..+++.++++ .++|
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~-~~A~~-------------------~Gv~~~~d~~e~~~~~aD 110 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHS-LAARS-------------------LGVSFFLDPHDLCERHPD 110 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHH-HHHHH-------------------cCCEEeCCHHHHhhcCCC
Confidence 7999999999999999999998 8999999998554 22222 0134456777644 5799
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHH-hhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIA-DVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~-~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
+||+|||. ..+.++++++. ++++++++|++.+++.....+.+.+.+.+ +.. ++..+|-+.
T Consensus 111 vViLavP~---------------~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~---~~~-~v~~HPMaG 171 (667)
T PLN02712 111 VILLCTSI---------------ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE---DFD-IICSHPMFG 171 (667)
T ss_pred EEEEcCCH---------------HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC---CCe-EEeeCCcCC
Confidence 99999883 23577777775 56888999988766553333334333322 222 577788653
Q ss_pred ccCccccccCCCCeEEEe---cCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH
Q 017997 160 AEGTAIQDLFNPDRVLIG---GRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS 211 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 211 (362)
.+ ....++.....++.+ +. +....+..+.+.++|+.++ .++..++++.
T Consensus 172 ~e-~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~lG--a~v~~ms~ee 222 (667)
T PLN02712 172 PQ-SAKHGWDGLRFVYEKVRIGN-EELRVSRCKSFLEVFEREG--CKMVEMSCTE 222 (667)
T ss_pred Cc-cccchhccCcEEEeeccCCC-ccccHHHHHHHHHHHHHcC--CEEEEeCHHH
Confidence 32 111111222222221 22 1112345677789999886 4677777665
No 90
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.28 E-value=5.1e-11 Score=103.31 Aligned_cols=209 Identities=15% Similarity=0.135 Sum_probs=136.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCC---------EEEecC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKN---------LFFSTD 71 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~---------l~~t~d 71 (362)
-||+|+|.|.+|.++|..||.. ||+|..||+.++.+....+.. +..+..+-++ ...|+ +..|++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~--GyqVqlYDI~e~Ql~~ALen~----~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS--GYQVQLYDILEKQLQTALENV----EKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc--CceEEEeeccHHHHHHHHHHH----HHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 4899999999999999999999 999999999987765322110 0011111111 11222 346789
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccH-HHHHHHHHhccCCCc
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTA-EAIEKILTHNSKGIK 149 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~-~~l~~~l~~~~~g~~ 149 (362)
+.+++++|=.|-.|+|... ++ -++..+++.+.+.+.+|+ ..+||++|... +.+. .+ .
T Consensus 78 l~E~vk~Ai~iQEcvpE~L-----------~l--kk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~---~k-----~ 136 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDL-----------NL--KKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLI---NK-----E 136 (313)
T ss_pred HHHHHhhhhhHHhhchHhh-----------HH--HHHHHHHHHHhcCCceEEeccccccChHHHhhhhh---hh-----h
Confidence 9999999999999998532 23 367778888888777666 33455776532 2221 11 1
Q ss_pred eEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHH
Q 017997 150 FQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISS 229 (362)
Q Consensus 150 ~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~ 229 (362)
-+++.+|.. |-- +.....++ -.+.+ +++++++.+.+.++++. .++... .|...++-|. ...|.
T Consensus 137 q~lvaHPvN--PPy----fiPLvElV-PaPwT--sp~tVdrt~~lM~sigq-~pV~l~----rei~Gf~lnr---iq~Ai 199 (313)
T KOG2305|consen 137 QCLVAHPVN--PPY----FIPLVELV-PAPWT--SPDTVDRTRALMRSIGQ-EPVTLK----REILGFALNR---IQYAI 199 (313)
T ss_pred heeEecCCC--CCc----ccchheec-cCCCC--ChhHHHHHHHHHHHhCC-CCcccc----cccccceecc---ccHHH
Confidence 256677732 211 01112233 33333 58899999999999874 455433 3444556666 57799
Q ss_pred HHHHHHHHHHhCCCHHHHHHHhcCC
Q 017997 230 VNAMSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 230 ~nE~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
.||-.++....+++..++...++..
T Consensus 200 lne~wrLvasGil~v~dvD~VmS~G 224 (313)
T KOG2305|consen 200 LNETWRLVASGILNVNDVDAVMSAG 224 (313)
T ss_pred HHHHHHHHHccCcchhhHHHHHhcC
Confidence 9999999999999988888888653
No 91
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.8e-10 Score=105.94 Aligned_cols=207 Identities=14% Similarity=0.185 Sum_probs=148.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh---hcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH---VSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a---~~~ 78 (362)
+.|+.||++.||..++.+.+++ ||.|.+|+|...+++.+.+.... ...+.-..++++. ++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~--Gf~v~~yNRT~skvD~flaneak--------------~~~i~ga~S~ed~v~klk~ 70 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK--GFTVCAYNRTTSKVDEFLANEAK--------------GTKIIGAYSLEDFVSKLKK 70 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc--CceEEEeccchHhHHHHHHHhhc--------------CCcccCCCCHHHHHHhcCC
Confidence 5799999999999999999999 99999999999999876542111 0011112233332 456
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-CccccHHHHHHHHHhccCCCceEEeeCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VPVKTAEAIEKILTHNSKGIKFQILSNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe 157 (362)
.-.|++-|.... .+...++++.++|.++++||+-.. -.+.|.++..+. .+. |. .+|..+-+
T Consensus 71 PR~iillvkAG~--------------pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el-~k~--Gi-lfvG~GVS 132 (487)
T KOG2653|consen 71 PRVIILLVKAGA--------------PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCREL-AKK--GI-LFVGSGVS 132 (487)
T ss_pred CcEEEEEeeCCC--------------cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHH-Hhc--Cc-EEEecCcc
Confidence 778888876432 356788999999999999998665 355666665543 333 22 23444333
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCC----CCc--EEeCChhHHHHHHHHHhHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVP----EDR--ILTTNLWSAELSKLAANAFLAQRISSVN 231 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~----~~~--~~~~~~~~ae~~Kl~~N~~~~~~ia~~n 231 (362)
-..+|. ++.|.++.||. +++...++.+|..+.. ..+ .++++-+++.++|+++|..-.--++++.
T Consensus 133 GGEEGA-----R~GPSlMpGg~-----~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~ 202 (487)
T KOG2653|consen 133 GGEEGA-----RYGPSLMPGGS-----KEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLIC 202 (487)
T ss_pred Cccccc-----ccCCccCCCCC-----hHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHH
Confidence 333333 45566888987 7888999999987631 122 3467778999999999999888999999
Q ss_pred HHHHHHHH-hCCCHHHHHHHhc
Q 017997 232 AMSALCEA-TGANVSQVAFAVG 252 (362)
Q Consensus 232 E~~~l~~~-~g~d~~~v~~~~~ 252 (362)
|...+.+. +|.+-+++.+...
T Consensus 203 EaY~vlk~~~gls~~eia~vF~ 224 (487)
T KOG2653|consen 203 EAYDVLKSVLGLSNDEIAEVFD 224 (487)
T ss_pred HHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999 7888888777765
No 92
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.25 E-value=8.1e-10 Score=98.98 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=70.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC-CCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP-IYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+||| +|.||.++|..|+++ ||+|+++++++++++.+++.... +...+. ..++..+ +..++++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~--G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~--------~~~~~~~-~~~ea~~~a 69 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA--GNKIIIGSRDLEKAEEAAAKALEELGHGGS--------DIKVTGA-DNAEAAKRA 69 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC--CCEEEEEEcCHHHHHHHHHHHHhhccccCC--------CceEEEe-ChHHHHhcC
Confidence 7999997 899999999999999 99999999999998877642110 000000 0112333 445678999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
|+||+|||.+ .+.++++++.+.++. ++|+..+.
T Consensus 70 DvVilavp~~---------------~~~~~l~~l~~~l~~-~vvI~~~n 102 (219)
T TIGR01915 70 DVVILAVPWD---------------HVLKTLESLRDELSG-KLVISPVV 102 (219)
T ss_pred CEEEEECCHH---------------HHHHHHHHHHHhccC-CEEEEecc
Confidence 9999999842 356777777776654 66665443
No 93
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.24 E-value=3.5e-11 Score=93.23 Aligned_cols=87 Identities=24% Similarity=0.281 Sum_probs=68.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCC---CeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhhhc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPS---IEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G---~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (362)
||+|||.|.||..++..|.++ | ++|+.+ ++++++.+++.+.. ...+++ +..++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~--g~~~~~v~~~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~~~~ 60 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS--GIKPHEVIIVSSRSPEKAAELAKEY------------------GVQATADDNEEAAQ 60 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT--TS-GGEEEEEEESSHHHHHHHHHHC------------------TTEEESEEHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCceeEEeeccCcHHHHHHHHHhh------------------ccccccCChHHhhc
Confidence 799999999999999999999 8 999955 99999999886521 133444 6788899
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
++|+||+|||. . .+.++++++ +...++++||.
T Consensus 61 ~advvilav~p-~--------------~~~~v~~~i-~~~~~~~~vis 92 (96)
T PF03807_consen 61 EADVVILAVKP-Q--------------QLPEVLSEI-PHLLKGKLVIS 92 (96)
T ss_dssp HTSEEEE-S-G-G--------------GHHHHHHHH-HHHHTTSEEEE
T ss_pred cCCEEEEEECH-H--------------HHHHHHHHH-hhccCCCEEEE
Confidence 99999999983 2 357788888 66778888874
No 94
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.24 E-value=3.8e-10 Score=105.42 Aligned_cols=201 Identities=19% Similarity=0.163 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCC
Q 017997 11 YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPT 90 (362)
Q Consensus 11 ~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~ 90 (362)
.||+.+|..|+++ ||+|++++|+ ++++.+++.+..+..++.+ .. .....+++++++ ...+|+||+||++.
T Consensus 1 aiG~~~a~~L~~~--G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~-~~----~~~~~~~~~~~~-~~~~D~iiv~vKs~- 70 (293)
T TIGR00745 1 AVGSLYGAYLARA--GHDVTLLARG-EQLEALNQEGLRIVSLGGE-FQ----FRPVSAATSPEE-LPPADLVIITVKAY- 70 (293)
T ss_pred CchHHHHHHHHhC--CCcEEEEecH-HHHHHHHHCCcEEEecCCc-EE----EcccccccChhh-cCCCCEEEEeccch-
Confidence 3799999999999 9999999997 7888898765555433211 00 002345566666 77999999999853
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC-cccccCccccccC
Q 017997 91 KTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP-EFLAEGTAIQDLF 169 (362)
Q Consensus 91 ~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-e~~~~g~a~~~~~ 169 (362)
++.++++.+.+++.++++|+. .....+..+.+.+.+.+.. .-..+.+.+ .+..||...+.
T Consensus 71 --------------~~~~~l~~l~~~l~~~~~iv~-~qNG~g~~~~l~~~~~~~~--v~~g~~~~~~~~~~pg~v~~~-- 131 (293)
T TIGR00745 71 --------------QTEEAAALLLPLIGKNTKVLF-LQNGLGHEERLRELLPARR--ILGGVVTHGAVREEPGVVHHA-- 131 (293)
T ss_pred --------------hHHHHHHHhHhhcCCCCEEEE-ccCCCCCHHHHHHHhCccC--EEEEEEEEeeEEcCCcEEEEe--
Confidence 357888999999988887764 3445556666666554321 011122222 34456654333
Q ss_pred CCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhH---------------------HHHHHHH
Q 017997 170 NPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANA---------------------FLAQRIS 228 (362)
Q Consensus 170 ~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~---------------------~~~~~ia 228 (362)
...++.+|..+.. .+..+.+.++|+..+. ......|+....|.|++.|+ .+.+..+
T Consensus 132 ~~~~~~iG~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~ 208 (293)
T TIGR00745 132 GLGATKIGDYVGE--NEAVEALAELLNEAGI-PAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRR 208 (293)
T ss_pred ccccEEEecCCCc--hHHHHHHHHHHHhCCC-CCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHH
Confidence 2335677866431 2445677777776542 23456799999999999776 2456668
Q ss_pred HHHHHHHHHHHhCCC
Q 017997 229 SVNAMSALCEATGAN 243 (362)
Q Consensus 229 ~~nE~~~l~~~~g~d 243 (362)
.++|+..++++.|++
T Consensus 209 ~~~E~~~v~~a~G~~ 223 (293)
T TIGR00745 209 LMDEVVRVARAEGVD 223 (293)
T ss_pred HHHHHHHHHHhCCCC
Confidence 899999999999875
No 95
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.23 E-value=6.5e-10 Score=102.22 Aligned_cols=193 Identities=12% Similarity=0.040 Sum_probs=114.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCP--SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~--G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|||+|.||.+++..|.+++. ..+++++|+++++. ....+.+..+++.++
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~ 58 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------------------PFVYLQSNEELAKTC 58 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------------------CeEEeCChHHHHHhC
Confidence 799999999999999999998720 13599999876431 022345666667899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+||+|+|. ..+.++++++.++++++.+|.+.+.+...+ +...+... .. .+ |.
T Consensus 59 D~Vilavkp---------------~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~---~~-vv-----r~ 111 (260)
T PTZ00431 59 DIIVLAVKP---------------DLAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGVE---AK-IV-----RV 111 (260)
T ss_pred CEEEEEeCH---------------HHHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCCC---Ce-EE-----EE
Confidence 999999873 246888889988877665666555555433 33333221 11 12 23
Q ss_pred ccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 160 ~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~ 239 (362)
.|++... +.+.. .++... ...+++..+.++.+|+.++ ..+.+..-.---+.-+ .-+--+....++..+...+.+
T Consensus 112 mPn~p~~-~g~g~-t~i~~~-~~~~~~~~~~v~~l~~~~G--~~~~v~E~~~d~~ta~-~gsgPA~~~~~~~al~~~~v~ 185 (260)
T PTZ00431 112 MPNTPSL-VGQGS-LVFCAN-NNVDSTDKKKVIDIFSACG--IIQEIKEKDMDIATAI-SGCGPAYVFLFIESLIDAGVK 185 (260)
T ss_pred CCCchhH-hccee-EEEEeC-CCCCHHHHHHHHHHHHhCC--cEEEEChHHcchhhhh-cCCHHHHHHHHHHHHHHHHHH
Confidence 3333311 11221 223322 2234677899999999986 3444431110001111 111122334566667777888
Q ss_pred hCCCHHHHHHHhc
Q 017997 240 TGANVSQVAFAVG 252 (362)
Q Consensus 240 ~g~d~~~v~~~~~ 252 (362)
.|++.++..+.+.
T Consensus 186 ~Gl~~~~a~~l~~ 198 (260)
T PTZ00431 186 NGLNRDVSKNLVL 198 (260)
T ss_pred cCCCHHHHHHHHH
Confidence 8999888777654
No 96
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.17 E-value=3.6e-09 Score=97.16 Aligned_cols=178 Identities=19% Similarity=0.198 Sum_probs=110.4
Q ss_pred HHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCCCCCCC
Q 017997 16 TMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGL 95 (362)
Q Consensus 16 lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~ 95 (362)
+|..|.++++.++|++||++++.++...+.+.. -...++ .++++++|+||+|||.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~-----------------~~~~~~-~~~~~~~DlvvlavP~------- 55 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII-----------------DEASTD-IEAVEDADLVVLAVPV------- 55 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS-----------------SEEESH-HHHGGCCSEEEE-S-H-------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe-----------------eeccCC-HhHhcCCCEEEEcCCH-------
Confidence 578888884458999999999998876432110 122333 4569999999999873
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEee----CCcccccCccccccCCC
Q 017997 96 GAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILS----NPEFLAEGTAIQDLFNP 171 (362)
Q Consensus 96 ~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~----~Pe~~~~g~a~~~~~~~ 171 (362)
+.+.++++++.++++++++|++.+++.....+.+.+.+.. +.. ++.. +||..++..+..+++..
T Consensus 56 --------~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~---~~~-~v~~HPM~G~e~~G~~~a~~~lf~g 123 (258)
T PF02153_consen 56 --------SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPE---GVR-FVGGHPMAGPEKSGPEAADADLFEG 123 (258)
T ss_dssp --------HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTS---SGE-EEEEEESCSTSSSSGGG-TTTTTTT
T ss_pred --------HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCc---ccc-eeecCCCCCCccccchhhcccccCC
Confidence 3578899999999999999998777765555555555442 122 3444 55766676777777777
Q ss_pred CeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH-HHHHHHHHhHHHHHHHHHHHHH
Q 017997 172 DRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS-AELSKLAANAFLAQRISSVNAM 233 (362)
Q Consensus 172 ~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-ae~~Kl~~N~~~~~~ia~~nE~ 233 (362)
..+++... ...+++.++.+.++++.++ ..+..++++. -+++-+++-.-..+..++++.+
T Consensus 124 ~~~il~p~-~~~~~~~~~~~~~l~~~~G--a~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~ 183 (258)
T PF02153_consen 124 RNWILCPG-EDTDPEALELVEELWEALG--ARVVEMDAEEHDRIMAYVSHLPHLLASALANTL 183 (258)
T ss_dssp SEEEEEEC-TTS-HHHHHHHHHHHHHCT---EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CeEEEeCC-CCChHHHHHHHHHHHHHCC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666532 3335688999999999986 4566667653 3444555555445555555543
No 97
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=99.13 E-value=3.6e-10 Score=106.08 Aligned_cols=118 Identities=22% Similarity=0.320 Sum_probs=82.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|+||+.+|..++.. |+ +|+++|++++..+... .+++++.... ....++++++|+++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi~~~l~~g~a---~d~~~~~~~~----~~~~~i~~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDVVEGIPQGKA---LDMYEASPVG----GFDTKVTGTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCCChhHHHH---Hhhhhhhhcc----CCCcEEEecCCHHH-hCCCC
Confidence 7999999999999999999998 65 8999999766433111 1222322211 11356888899987 89999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+||+|+++|...++ ++ ..|++.++++.++|.++.+ +.+|++- |.|....
T Consensus 72 iVIitag~p~~~~~---sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~-tNP~di~ 124 (305)
T TIGR01763 72 IVVITAGLPRKPGM---SREDLLSMNAGIVREVTGRIMEHSP-NPIIVVV-SNPLDAM 124 (305)
T ss_pred EEEEcCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHH
Confidence 99999999876521 10 1577888999999999864 4444432 4555543
No 98
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=99.12 E-value=2.6e-09 Score=98.27 Aligned_cols=207 Identities=17% Similarity=0.235 Sum_probs=137.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-----eEEEEeCCH------HHH-HHHHcC-CCCCCCCChHHHHhhhcCCCEEE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-----EVAVVDISV------SRI-NAWNSD-QLPIYEPGLDGVVKQCRGKNLFF 68 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-----~V~~~d~~~------~~~-~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~ 68 (362)
.||+|||.|+||+++|+.+.++..++ +|..|-..+ +++ +-+|+. ++..|-|+.+ ...++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~------lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK------LPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc------CCCCeEe
Confidence 48999999999999999998763223 466664322 233 335543 3445666643 4667999
Q ss_pred ecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC-Cc---cc-cHHHHHHHHHh
Q 017997 69 STDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST-VP---VK-TAEAIEKILTH 143 (362)
Q Consensus 69 t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST-v~---~g-t~~~l~~~l~~ 143 (362)
++|+.+++.+||+++..+|.. ++.+++++|..+++++..-|..+. +. +| ..+.+.+++.+
T Consensus 96 v~dl~ea~~dADilvf~vPhQ---------------f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~ 160 (372)
T KOG2711|consen 96 VPDLVEAAKDADILVFVVPHQ---------------FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR 160 (372)
T ss_pred cchHHHHhccCCEEEEeCChh---------------hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence 999999999999999999842 467899999999999988776555 33 33 23445666665
Q ss_pred ccCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcE-EeCChhHHHHHHHH----
Q 017997 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRI-LTTNLWSAELSKLA---- 218 (362)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ae~~Kl~---- 218 (362)
.. |....++++|..+.+-.. +.+. .-.||+.+. .+.-..++.+|++-. .++ .+.|..+.|++.-+
T Consensus 161 ~l-gI~~~vL~GaNiA~EVa~--~~f~--e~tIg~~~~---~~~~~~l~~lf~~p~--FrV~~~~D~~~VEi~GaLKNVv 230 (372)
T KOG2711|consen 161 AL-GIPCSVLMGANIASEVAN--EKFC--ETTIGYKDK---KEAGILLKKLFRTPY--FRVVVVEDADGVEICGALKNVV 230 (372)
T ss_pred Hh-CCCceeecCCchHHHHHh--cccc--ceeEeccch---hhcchHHHHHhCCCc--eEEEEeccchHhHHhhhHHhHH
Confidence 54 345567888877655332 2222 334677642 333345888888743 334 45677776665533
Q ss_pred -------------HhHHHHHHHHHHHHHHHHHHH
Q 017997 219 -------------ANAFLAQRISSVNAMSALCEA 239 (362)
Q Consensus 219 -------------~N~~~~~~ia~~nE~~~l~~~ 239 (362)
+|+..++.-...-||..|++.
T Consensus 231 AiaaGfvdGL~~g~NTkaAi~r~Gl~Em~~F~~~ 264 (372)
T KOG2711|consen 231 AIAAGFVDGLGLGNNTKAAIIRLGLLEMIKFATH 264 (372)
T ss_pred HHhhhhhhhccCCcchHHHHHHhhHHHHHHHHHH
Confidence 566667777777788888776
No 99
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.10 E-value=2.5e-10 Score=92.68 Aligned_cols=92 Identities=28% Similarity=0.266 Sum_probs=64.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.+|..++..|.++ ||+|.++ .++++..+.+.+.. +.. ...++.+.+.++|
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a--g~~v~~v~srs~~sa~~a~~~~-----------------~~~-~~~~~~~~~~~aD 70 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA--GHEVVGVYSRSPASAERAAAFI-----------------GAG-AILDLEEILRDAD 70 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT--TSEEEEESSCHH-HHHHHHC-------------------TT------TTGGGCC-S
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCccccccccccc-----------------ccc-cccccccccccCC
Confidence 6999999999999999999999 9999887 67777777666521 112 2234566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh--cCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV--SKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~--l~~~~iVv~~ST 128 (362)
++||+||.. .+.++.++|... .+++++|+-+|-
T Consensus 71 lv~iavpDd---------------aI~~va~~La~~~~~~~g~iVvHtSG 105 (127)
T PF10727_consen 71 LVFIAVPDD---------------AIAEVAEQLAQYGAWRPGQIVVHTSG 105 (127)
T ss_dssp EEEE-S-CC---------------HHHHHHHHHHCC--S-TT-EEEES-S
T ss_pred EEEEEechH---------------HHHHHHHHHHHhccCCCCcEEEECCC
Confidence 999999842 578899999987 789999998875
No 100
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.09 E-value=2.4e-09 Score=93.04 Aligned_cols=165 Identities=20% Similarity=0.168 Sum_probs=99.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~-~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||+|+|+|.|.+|..+|.+|++. ||+|+.-.+ .+++.+...+..- ..++.. +.++|++.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a--g~eV~igs~r~~~~~~a~a~~l~----------------~~i~~~-~~~dA~~~a 61 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA--GHEVIIGSSRGPKALAAAAAALG----------------PLITGG-SNEDAAALA 61 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC--CCeEEEecCCChhHHHHHHHhhc----------------cccccC-ChHHHHhcC
Confidence 89999999999999999999999 999998854 4555555544211 123333 446679999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcc---c------------c-HHHHHHHHHh
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV---K------------T-AEAIEKILTH 143 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~---g------------t-~~~l~~~l~~ 143 (362)
|+||++||-+ ++.++++++...+. +++||+ .|+|. + + ++.+++.++.
T Consensus 62 DVVvLAVP~~---------------a~~~v~~~l~~~~~-~KIvID-~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~ 124 (211)
T COG2085 62 DVVVLAVPFE---------------AIPDVLAELRDALG-GKIVID-ATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG 124 (211)
T ss_pred CEEEEeccHH---------------HHHhHHHHHHHHhC-CeEEEe-cCCCccccCCccccccCCCCCcHHHHHHHHCCC
Confidence 9999999843 45677788887765 777765 55651 1 1 1233333332
Q ss_pred ccCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChh
Q 017997 144 NSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLW 210 (362)
Q Consensus 144 ~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 210 (362)
...-..|.- .....+...... + .+. -+.+.++ +.++.+.+.+|-+.++ ..++..+...
T Consensus 125 akVVkAFn~-i~a~~l~~~~~~-~-~~~-~v~vagD----D~~Ak~~v~~L~~~iG-~~~ld~G~L~ 182 (211)
T COG2085 125 AKVVKAFNT-IPAAVLADLAKP-G-GRR-DVLVAGD----DAEAKAVVAELAEDIG-FRPLDAGPLE 182 (211)
T ss_pred cchhhhhcc-cCHHHhccCCCc-C-Cce-eEEEecC----cHHHHHHHHHHHHhcC-cceeeccccc
Confidence 210011211 111222222111 1 122 2445556 3788999999999885 3456555543
No 101
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.08 E-value=4.9e-08 Score=86.41 Aligned_cols=248 Identities=15% Similarity=0.088 Sum_probs=143.6
Q ss_pred CceEEEEcCCh--------------------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh
Q 017997 1 MVKICCIGAGY--------------------VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ 60 (362)
Q Consensus 1 ~mkI~VIGlG~--------------------~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~ 60 (362)
||||+|.|+|+ -|..||..||++ ||+|++.|.|.+-.+. +..+.
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA--GHDVVLaePn~d~~dd--------------~~w~~ 64 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA--GHDVVLAEPNRDIMDD--------------EHWKR 64 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc--CCcEEeecCCccccCH--------------HHHHH
Confidence 69999999995 477899999999 9999999987543221 11111
Q ss_pred hcCCCEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH-HHHHH
Q 017997 61 CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA-EAIEK 139 (362)
Q Consensus 61 ~~~~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~-~~l~~ 139 (362)
+.....+.++|-.++++++++.++- ||+.. ....+.+.|.++++.+.+|.++.|++|-.. ..+..
T Consensus 65 vedAGV~vv~dD~eaa~~~Ei~VLF--TPFGk------------~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~ 130 (340)
T COG4007 65 VEDAGVEVVSDDAEAAEHGEIHVLF--TPFGK------------ATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG 130 (340)
T ss_pred HHhcCcEEecCchhhhhcceEEEEe--cccch------------hhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh
Confidence 1123477777777789999999999 45542 346788999999999999999888877543 34444
Q ss_pred HHHhccCCCceEEe-eCCcccccCccccccCCCCeEEEecCCC----cchHHHHHHHHHHHhccCCCCcEEeCChhHHHH
Q 017997 140 ILTHNSKGIKFQIL-SNPEFLAEGTAIQDLFNPDRVLIGGRET----PEGQKAVKALKDVYAHWVPEDRILTTNLWSAEL 214 (362)
Q Consensus 140 ~l~~~~~g~~~~v~-~~Pe~~~~g~a~~~~~~~~~viiG~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~ 214 (362)
.|+-.. .++.+. ++|- ..||...++ .+++|+..+ -.+++..++..++.++.+. ..+ +.++.....
T Consensus 131 ~Lr~kR--~dVGvssmHPA-gvPGtp~h~-----~yviagr~t~g~elATeEQi~r~velaes~Gk-~~y-v~padv~s~ 200 (340)
T COG4007 131 ELRTKR--EDVGVSSMHPA-GVPGTPQHG-----HYVIAGRSTEGKELATEEQIERCVELAESTGK-EVY-VLPADVVSA 200 (340)
T ss_pred hhcCch--hhcCccccCCC-CCCCCCCCc-----eEEEeccCCCceeeccHHHHHHHHHHHHhcCC-ceE-ecCHHHHHH
Confidence 443221 233333 4664 457775443 456676543 2347788999999999873 444 333322112
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHhcCC-CCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCc
Q 017997 215 SKLAANAFLAQRISSVNAMSALCEA-TGANVSQVAFAVGTD-SRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLP 290 (362)
Q Consensus 215 ~Kl~~N~~~~~~ia~~nE~~~l~~~-~g~d~~~v~~~~~~~-~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~ 290 (362)
+.=+.-...+..++.+-+......+ .|+..+-+-+-+-.. ..+ ..+--..|++|-.-.-|+.+|++.++...+.
T Consensus 201 VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIekQilmtLqTm--AsLvetsGi~g~~~~~n~elL~rSa~nM~l~ 276 (340)
T COG4007 201 VADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIEKQILMTLQTM--ASLVETSGIDGMLKALNPELLLRSARNMHLL 276 (340)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH--HHHHHhcchhHHHHhcCHHHHHHHhhhcccc
Confidence 1112222233334444444444443 344433222211100 000 0111112455443334788888877765443
No 102
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.05 E-value=2.3e-08 Score=94.07 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=95.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||.++|..|... |++|++++++.++.....+. ..+.. .+.+++++.||+
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s--G~~Vvv~~r~~~~s~~~A~~------------------~G~~~-~s~~eaa~~ADV 76 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS--GVDVVVGLREGSKSWKKAEA------------------DGFEV-LTVAEAAKWADV 76 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC--CCEEEEEECCchhhHHHHHH------------------CCCee-CCHHHHHhcCCE
Confidence 5899999999999999999998 99999988875443322210 11333 367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
|+++||.. ...+++ +++.++++++++|+..+-+.....+ ....+ +.++ +...|. .
T Consensus 77 VvLaVPd~---------------~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~---~~~V-i~vaPn--~ 132 (330)
T PRK05479 77 IMILLPDE---------------VQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPA---DVDV-IMVAPK--G 132 (330)
T ss_pred EEEcCCHH---------------HHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCC---CCcE-EEeCCC--C
Confidence 99999832 235666 7788999999988765554433221 11111 2333 334564 3
Q ss_pred cCccccccC----CCCeEE-EecCCCcchHHHHHHHHHHHhccCC
Q 017997 161 EGTAIQDLF----NPDRVL-IGGRETPEGQKAVKALKDVYAHWVP 200 (362)
Q Consensus 161 ~g~a~~~~~----~~~~vi-iG~~~~~~~~~~~~~~~~l~~~~~~ 200 (362)
|+..+...+ ..+.++ +..+ .+.++.+.+..++..++.
T Consensus 133 Pg~~vr~~~~~G~Gv~~l~av~~d---~t~~a~~~a~~l~~aiG~ 174 (330)
T PRK05479 133 PGHLVRREYEEGGGVPCLIAVHQD---ASGNAKDLALAYAKGIGG 174 (330)
T ss_pred CchhhhhhhhcCCCceEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence 444222221 112233 2221 246788999999999873
No 103
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.01 E-value=8.5e-09 Score=97.82 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=77.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|||+|.||.++|..|... |++|++||++++.... .+.+++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~--G~~V~~~d~~~~~~~~-----------------------~~~~~~~l~ell~~aDi 201 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGF--GATITAYDAYPNKDLD-----------------------FLTYKDSVKEAIKDADI 201 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCChhHhhh-----------------------hhhccCCHHHHHhcCCE
Confidence 6899999999999999999988 9999999998754211 12234578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|... +...+ ..+.+.+.++++.++|+.|--..=..+.+.+.|++.
T Consensus 202 Vil~lP~t~-----------~t~~l--i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 202 ISLHVPANK-----------ESYHL--FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred EEEeCCCcH-----------HHHHH--HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 999998532 22222 346777889999999987653333345666666653
No 104
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.96 E-value=3.6e-09 Score=99.72 Aligned_cols=120 Identities=24% Similarity=0.289 Sum_probs=78.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|+||..+|..++.. |+ +|+++|+++++.+..... +.+... ......+++.++|+++ +++|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~--~~~ev~L~D~~~~~~~~~~~d---l~~~~~----~~~~~~~i~~~~d~~~-~~~a 71 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK--ELGDVVLFDIVEGVPQGKALD---IAEAAP----VEGFDTKITGTNDYED-IAGS 71 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEEECCCchhHHHHHH---HHhhhh----hcCCCcEEEeCCCHHH-HCCC
Confidence 78999999999999999999988 55 999999998876543210 101000 0001245777788864 8999
Q ss_pred cEEEEeccCCCCCCCCC--CCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 80 DIVFVSVNTPTKTQGLG--AGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 80 DvVii~vptp~~~~g~~--~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+||+++..|..... . +.-.-++..+++.++.+.++.+++.+|+. |.|...
T Consensus 72 DiVii~~~~p~~~~~-~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~d~ 124 (307)
T PRK06223 72 DVVVITAGVPRKPGM-SRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV--TNPVDA 124 (307)
T ss_pred CEEEECCCCCCCcCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence 999999988764311 0 00013446678888888888755444443 444443
No 105
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.93 E-value=3.8e-09 Score=99.45 Aligned_cols=121 Identities=26% Similarity=0.398 Sum_probs=84.1
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|||+|+|+ |++|..+|..|+.. |+ +|+++|+++ +.++++....++.+. +...-...++++++|+++ +++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~--g~~~~v~lvd~~~-~~~~l~~~~~dl~d~----~~~~~~~~~i~~~~d~~~-l~~ 72 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE--DVVKEINLISRPK-SLEKLKGLRLDIYDA----LAAAGIDAEIKISSDLSD-VAG 72 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEECcc-cccccccccchhhhc----hhccCCCcEEEECCCHHH-hCC
Confidence 79999998 99999999999998 65 599999954 444454444443311 000000124666778765 999
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCCh-----HHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~-----~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||+||+|+.+|...+. ...|+ +.++++.+.|.++.+...+|+.++++++.|.
T Consensus 73 aDiViitag~p~~~~~----~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~ 129 (309)
T cd05294 73 SDIVIITAGVPRKEGM----SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTY 129 (309)
T ss_pred CCEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHH
Confidence 9999999998865421 12444 7788888899888766666677777777663
No 106
>PRK07574 formate dehydrogenase; Provisional
Probab=98.85 E-value=5.9e-08 Score=93.52 Aligned_cols=109 Identities=13% Similarity=0.145 Sum_probs=79.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|||+|.||..+|..|... |.+|++||++....+.... ..++...+++++++.||+
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~f--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPF--DVKLHYTDRHRLPEEVEQE-------------------LGLTYHVSFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCchhhHhh-------------------cCceecCCHHHHhhcCCE
Confidence 6899999999999999999887 9999999987532221111 123444578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.. +++..+.. ++....++++.++|+.+.-..-..+.|.+.|++.
T Consensus 252 V~l~lPlt-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 301 (385)
T PRK07574 252 VTIHCPLH-----------PETEHLFD--ADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG 301 (385)
T ss_pred EEEcCCCC-----------HHHHHHhC--HHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence 99998842 22333322 4667778999999998876665667777777764
No 107
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.84 E-value=5.1e-08 Score=92.71 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=78.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..|... |++|++||+++..... .. ..... .++++++++||+
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~-~~-------------------~~~~~-~~l~ell~~aDi 207 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGF--GMRILYYSRTRKPEAE-KE-------------------LGAEY-RPLEELLRESDF 207 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCChhhH-HH-------------------cCCEe-cCHHHHHhhCCE
Confidence 4899999999999999999887 9999999997543211 11 01222 467888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|... ++..+. -++....++++.++|+.|+-..-..+.+.+.|++.
T Consensus 208 V~l~lP~t~-----------~T~~~i--~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g 257 (333)
T PRK13243 208 VSLHVPLTK-----------ETYHMI--NEERLKLMKPTAILVNTARGKVVDTKALVKALKEG 257 (333)
T ss_pred EEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence 999988532 122222 23566778999999999987766777787777664
No 108
>PLN03139 formate dehydrogenase; Provisional
Probab=98.80 E-value=9.6e-08 Score=92.01 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=79.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..|..- |.+|++||++....+...+ .++...+++++++++||+
T Consensus 200 ktVGIVG~G~IG~~vA~~L~af--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~sDv 258 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPF--NCNLLYHDRLKMDPELEKE-------------------TGAKFEEDLDAMLPKCDV 258 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHC--CCEEEEECCCCcchhhHhh-------------------cCceecCCHHHHHhhCCE
Confidence 5899999999999999999887 9999999987432221111 123445678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|... ++..+. -+++...++++.++|+.+.-..-..+.+.+.|++.
T Consensus 259 V~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG 308 (386)
T PLN03139 259 VVINTPLTE-----------KTRGMF--NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 (386)
T ss_pred EEEeCCCCH-----------HHHHHh--CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence 999988532 223332 24677888999999998775555556777777654
No 109
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.79 E-value=3.1e-08 Score=94.20 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=78.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|||+|.||..+|..|++.. |.+|++||+++... ... .+..++++++++++||+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~-g~~V~~~d~~~~~~--~~~--------------------~~~~~~~l~ell~~aDv 203 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGY-GSDVVAYDPFPNAK--AAT--------------------YVDYKDTIEEAVEGADI 203 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCccHh--HHh--------------------hccccCCHHHHHHhCCE
Confidence 68999999999999999995432 88999999876432 111 12345678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++|+|..... ..+.. +...+.++++.++|+.|+-..-.++.+...+.+.
T Consensus 204 Ivl~lP~t~~t-----------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g 253 (332)
T PRK08605 204 VTLHMPATKYN-----------HYLFN--ADLFKHFKKGAVFVNCARGSLVDTKALLDALDNG 253 (332)
T ss_pred EEEeCCCCcch-----------hhhcC--HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence 99999864321 22211 3456778999999999997776777777767653
No 110
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.76 E-value=6.5e-07 Score=84.24 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=91.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~-~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+|.||.++|..|.+. |++|+++++ +++..+.+.+. .+..+ +..+++++||
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s--G~~Viv~~~~~~~~~~~a~~~-------------------Gv~~~-s~~ea~~~AD 61 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS--GLNVIVGLRKGGASWKKATED-------------------GFKVG-TVEEAIPQAD 61 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--CCeEEEEECcChhhHHHHHHC-------------------CCEEC-CHHHHHhcCC
Confidence 6899999999999999999998 888876554 44455544331 23333 4677789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+|++++|... ....+.+++.+.++++.+|.+...+.. ..+...+.+ +.+ .+-..|. .
T Consensus 62 iVvLaVpp~~--------------~~~~v~~ei~~~l~~g~iVs~aaG~~i---~~~~~~~~~---~~~-VvrvmPn--~ 118 (314)
T TIGR00465 62 LIMNLLPDEV--------------QHEVYEAEIQPLLKEGKTLGFSHGFNI---HFVQIVPPK---DVD-VVMVAPK--G 118 (314)
T ss_pred EEEEeCCcHh--------------HHHHHHHHHHhhCCCCcEEEEeCCccH---hhccccCCC---CCc-EEEECCC--C
Confidence 9999998321 234556778888888887765443432 222222222 122 2334664 2
Q ss_pred cCccccc----cCCCCeEE-EecCCCcchHHHHHHHHHHHhccCC
Q 017997 161 EGTAIQD----LFNPDRVL-IGGRETPEGQKAVKALKDVYAHWVP 200 (362)
Q Consensus 161 ~g~a~~~----~~~~~~vi-iG~~~~~~~~~~~~~~~~l~~~~~~ 200 (362)
|+..+.. -...+.++ ++ . ..+.+..+.+..++..++.
T Consensus 119 p~~~vr~~~~~G~G~~~l~a~~-~--~~~~~~~~~~~~~~~~iG~ 160 (314)
T TIGR00465 119 PGTLVREEYKEGFGVPTLIAVE-Q--DPTGEAMAIALAYAKAIGG 160 (314)
T ss_pred CcHHHHHHhhcCCCeeEEEEec-C--CCCHHHHHHHHHHHHHcCC
Confidence 3331100 01111232 22 2 2246778899999999873
No 111
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.75 E-value=1.1e-07 Score=87.62 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=53.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|.||..++..+.+..++++ +.++|+++++.+.+.+.. .....+++++.+.++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------------------~~~~~~~~~ell~~~ 62 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------------------GAKACLSIDELVEDV 62 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------------------CCeeECCHHHHhcCC
Confidence 7999999999999999999987522355 557899999888765420 124557788877899
Q ss_pred cEEEEecc
Q 017997 80 DIVFVSVN 87 (362)
Q Consensus 80 DvVii~vp 87 (362)
|+|++|+|
T Consensus 63 DvVvi~a~ 70 (265)
T PRK13304 63 DLVVECAS 70 (265)
T ss_pred CEEEEcCC
Confidence 99999976
No 112
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.74 E-value=1.5e-08 Score=85.14 Aligned_cols=114 Identities=23% Similarity=0.265 Sum_probs=77.3
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVF 83 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVi 83 (362)
|+|+|+|.||+.+|..|++. |++|+++++++ +.+.+++....+.....++.+ .......+.......+|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~--g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA--GHDVTLVSRSP-RLEAIKEQGLTITGPDGDETV-----QPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT--TCEEEEEESHH-HHHHHHHHCEEEEETTEEEEE-----EEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC--CCceEEEEccc-cHHhhhheeEEEEecccceec-----ccccccCcchhccCCCcEEE
Confidence 78999999999999999998 99999999998 888888655444322211100 01122233323478999999
Q ss_pred EeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHH
Q 017997 84 VSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKIL 141 (362)
Q Consensus 84 i~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l 141 (362)
+||++. ++.++++.+.+++.+++.|+. .....+..+.+.+.+
T Consensus 73 v~vKa~---------------~~~~~l~~l~~~~~~~t~iv~-~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 73 VAVKAY---------------QLEQALQSLKPYLDPNTTIVS-LQNGMGNEEVLAEYF 114 (151)
T ss_dssp E-SSGG---------------GHHHHHHHHCTGEETTEEEEE-ESSSSSHHHHHHCHS
T ss_pred EEeccc---------------chHHHHHHHhhccCCCcEEEE-EeCCCCcHHHHHHHc
Confidence 998853 247788899999988866543 344445555555544
No 113
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.73 E-value=1.3e-07 Score=89.06 Aligned_cols=110 Identities=22% Similarity=0.412 Sum_probs=73.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
|||+|||+|++|+++|..|+.+ | ++|.++|+++++.+. +... .++.++ ....++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~--g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~------------~~i~~~d~~~- 64 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR--GLASEIVLVDINKAKAEGEAMDLAHG-TPFVKP------------VRIYAGDYAD- 64 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCCEEEEEECCchhhhhHHHHHHcc-ccccCC------------eEEeeCCHHH-
Confidence 7999999999999999999998 6 699999999877664 3332 122111 1223567754
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
+++||+||+|++.|..... ++ ..+...+++..+.|.++.+.+ ++++. |.|..
T Consensus 65 l~~aDiViita~~~~~~~~---~r~dl~~~n~~i~~~~~~~l~~~~~~g-iiiv~-tNP~d 120 (308)
T cd05292 65 CKGADVVVITAGANQKPGE---TRLDLLKRNVAIFKEIIPQILKYAPDA-ILLVV-TNPVD 120 (308)
T ss_pred hCCCCEEEEccCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEe-cCcHH
Confidence 9999999999998765410 11 113345666777777766454 44443 34443
No 114
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.71 E-value=1.2e-07 Score=88.91 Aligned_cols=104 Identities=10% Similarity=0.122 Sum_probs=76.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||++... .+ . .....++++++++||+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~af--G~~V~~~~r~~~~-----~~--------~-----------~~~~~~l~ell~~aDi 176 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAF--GMNIYAYTRSYVN-----DG--------I-----------SSIYMEPEDIMKKSDF 176 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcc-----cC--------c-----------ccccCCHHHHHhhCCE
Confidence 4899999999999999877766 9999999986311 11 0 0112467888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... +..+. -++....++++.++|+.|.-++-..+.+.+.+++.
T Consensus 177 v~~~lp~t~~-----------T~~li--~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 177 VLISLPLTDE-----------TRGMI--NSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred EEECCCCCch-----------hhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999885321 22222 24556678999999999987777778887777764
No 115
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.70 E-value=1.8e-07 Score=86.47 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=73.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.||..++..|.+..+++++. ++|+++++.+.+.+.. +.....+++++.+.++|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~-----------------g~~~~~~~~eell~~~D 69 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL-----------------RRPPPVVPLDQLATHAD 69 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCCC
Confidence 69999999999999999998632378876 7899998887765421 11234567788788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQI 152 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v 152 (362)
+|++|+|+.. ..+..... ++.+.-|+..|+-.....+++.+..++. |..+++
T Consensus 70 ~Vvi~tp~~~---------------h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~--g~~l~v 121 (271)
T PRK13302 70 IVVEAAPASV---------------LRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQN--GGQIIV 121 (271)
T ss_pred EEEECCCcHH---------------HHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHc--CCEEEE
Confidence 9999987531 23333333 3455555555543233345565555554 344444
No 116
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.68 E-value=1e-07 Score=88.63 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=67.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|||+|.||.++|.+|... |++|+++++.....+.... ..+.. .+++++++.||+
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~--G~~ViV~~r~~~s~~~A~~-------------------~G~~v-~sl~Eaak~ADV 74 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS--GVEVVVGVRPGKSFEVAKA-------------------DGFEV-MSVSEAVRTAQV 74 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC--cCEEEEEECcchhhHHHHH-------------------cCCEE-CCHHHHHhcCCE
Confidence 4899999999999999999998 9999999875433333222 11333 378888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv 129 (362)
|++++|.+.+ ..++ +.+.+.++++++++..-.+
T Consensus 75 V~llLPd~~t---------------~~V~~~eil~~MK~GaiL~f~hgf 108 (335)
T PRK13403 75 VQMLLPDEQQ---------------AHVYKAEVEENLREGQMLLFSHGF 108 (335)
T ss_pred EEEeCCChHH---------------HHHHHHHHHhcCCCCCEEEECCCc
Confidence 9999985321 2333 5688999999988765443
No 117
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.68 E-value=6.9e-08 Score=81.41 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=74.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|+|+|.||.+++..|++.+ +++|+++|+++++.+.+.+.... .......++..++++++|+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~Dv 84 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE--------------LGIAIAYLDLEELLAEADL 84 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh--------------cccceeecchhhccccCCE
Confidence 58999999999999999999872 38999999999988776542000 0000123455666789999
Q ss_pred EEEeccCCCC-CCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTK-TQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~-~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
||.|+|.+.. .+ +.. + . ...++++.+|++.|++|+.+ .+.+.+.+.
T Consensus 85 vi~~~~~~~~~~~--------~~~-~--~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 85 IINTTPVGMKPGD--------ELP-L--P----PSLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred EEeCcCCCCCCCC--------CCC-C--C----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 9999987542 10 000 0 0 11257889999999987765 554445443
No 118
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.68 E-value=8.1e-06 Score=71.57 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=113.1
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||. |.||..++..|.++ ||.|+ +++||
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~--g~~v~---------------------------------------------~~~~D 33 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN--GLGVY---------------------------------------------IKKAD 33 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC--CCEEE---------------------------------------------ECCCC
Confidence 79999998 99999999999998 88875 13689
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLA 160 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~ 160 (362)
+||+|+|.. .+.+.++++. .+|++.+++.. .+.+ .. .+ ++..+|=+ +
T Consensus 34 lVilavPv~---------------~~~~~i~~~~------~~v~Dv~SvK~----~i~~---~~---~~-~vg~HPMf-G 80 (197)
T PRK06444 34 HAFLSVPID---------------AALNYIESYD------NNFVEISSVKW----PFKK---YS---GK-IVSIHPLF-G 80 (197)
T ss_pred EEEEeCCHH---------------HHHHHHHHhC------CeEEeccccCH----HHHH---hc---CC-EEecCCCC-C
Confidence 999998731 2344444432 35665443322 2221 11 12 57788865 3
Q ss_pred cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 017997 161 EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240 (362)
Q Consensus 161 ~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~ 240 (362)
|..+..+++. .+++-.. ..+++..+.++++++ + ..+..++++. +|-.+|++.-+..+....
T Consensus 81 p~~a~~~lf~--~~iv~~~--~~~~~~~~~~~~l~~--G--~~~~~~t~ee-----------HD~~~A~ishLpH~ia~a 141 (197)
T PRK06444 81 PMSYNDGVHR--TVIFIND--ISRDNYLNEINEMFR--G--YHFVEMTADE-----------HDLLMSEIMVKPYIISMI 141 (197)
T ss_pred CCcCcccccc--eEEEECC--CCCHHHHHHHHHHHc--C--CEEEEeCHHH-----------HHHHHHHHHHHHHHHHHH
Confidence 5566556553 2333222 225677888899987 3 4666778776 333344444443332211
Q ss_pred CCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhHHHHHHHHHHHhc
Q 017997 241 GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECN-GLPEVAEYWKQVIKINDYQKSRFVNRVVASMF 319 (362)
Q Consensus 241 g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~-g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~ 319 (362)
-.+. . . .+ .++|| + .++++|+.. +-. +++|......|.+- ..++++++.++
T Consensus 142 l~~~-------~----~--~~--~t~~f------r---~l~ria~~~~~~~--p~lw~dI~~~N~~a--~~~~~~~~~~~ 193 (197)
T PRK06444 142 LKDI-------K----S--DI--KTGSF------D---KLLEVSEIKEKEN--WEVFNDTIIYNPYT--NVINDLIERLN 193 (197)
T ss_pred HccC-------C----C--CC--CCccH------H---HHHHHHHHhccCC--HHHHHHHHHHCchH--HHHHHHHHHHh
Confidence 1110 0 0 11 22344 3 455666543 333 78999999999875 67777777764
No 119
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.68 E-value=7e-08 Score=90.63 Aligned_cols=108 Identities=20% Similarity=0.301 Sum_probs=73.3
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCcE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|||+|+||..+|..++.. |+ +|+++|+++++.+...- .+.+..... ...+++.++|+++ +++||+
T Consensus 1 I~IIGaG~vG~~ia~~la~~--~l~eV~L~Di~e~~~~g~~~--------dl~~~~~~~~~~~~I~~t~d~~~-l~dADi 69 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK--ELGDVVLLDIVEGLPQGKAL--------DISQAAPILGSDTKVTGTNDYED-IAGSDV 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC--CCcEEEEEeCCCcHHHHHHH--------HHHHhhhhcCCCeEEEEcCCHHH-hCCCCE
Confidence 68999999999999999988 65 99999999875543221 011111110 1245777778765 999999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
||+++.+|...+. ++ .-++..++++++.|.++.+++.+|+.
T Consensus 70 VIit~g~p~~~~~---~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~ 114 (300)
T cd01339 70 VVITAGIPRKPGM---SRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114 (300)
T ss_pred EEEecCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 9999988865421 11 12556677888888888755544443
No 120
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.67 E-value=2.4e-07 Score=76.99 Aligned_cols=118 Identities=25% Similarity=0.360 Sum_probs=74.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+ |.+|..+|..|...+.+.++.++|+++++.+..... ++..... .....+...+..+++++||
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D--------l~~~~~~-~~~~~~i~~~~~~~~~~aD 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD--------LSHASAP-LPSPVRITSGDYEALKDAD 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH--------HHHHHHG-STEEEEEEESSGGGGTTES
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh--------hhhhhhh-ccccccccccccccccccc
Confidence 89999999 999999999999885567899999998877654321 1111111 1112333334445599999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+|+++...|..+ | .++ ..+...+++..+.+.++. ++.++++- |.|...
T Consensus 72 ivvitag~~~~~-g--~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivv-tNPvd~ 123 (141)
T PF00056_consen 72 IVVITAGVPRKP-G--MSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVV-TNPVDV 123 (141)
T ss_dssp EEEETTSTSSST-T--SSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE--SSSHHH
T ss_pred EEEEeccccccc-c--ccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEe-CCcHHH
Confidence 999998876543 1 111 122344556666777776 44554432 556553
No 121
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.61 E-value=6.7e-07 Score=84.44 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=86.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI-SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~-~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+++||||+|.+|..+|..+..- |.+|++||+ .+...+.. .......++++.++.||
T Consensus 143 kTvGIiG~G~IG~~va~~l~af--gm~v~~~d~~~~~~~~~~---------------------~~~~~~~~Ld~lL~~sD 199 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF--GMKVIGYDPYSPRERAGV---------------------DGVVGVDSLDELLAEAD 199 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCCchhhhcc---------------------ccceecccHHHHHhhCC
Confidence 4899999999999999999887 999999999 33222111 11233467888899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccC-CCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~Pe~~ 159 (362)
+|.+.+|-.. ++..+.. .+....++++.++|+++=-+.=..+.|.+.|++... |.-+. ++.+|-.
T Consensus 200 iv~lh~PlT~-----------eT~g~i~--~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lD-Vf~~EPl 265 (324)
T COG0111 200 ILTLHLPLTP-----------ETRGLIN--AEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALD-VFEEEPL 265 (324)
T ss_pred EEEEcCCCCc-----------chhcccC--HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEec-CCCCCCC
Confidence 9999987532 2333322 234456889999998765433344567777765321 21111 3567766
Q ss_pred ccCccccccCCCCeEE
Q 017997 160 AEGTAIQDLFNPDRVL 175 (362)
Q Consensus 160 ~~g~a~~~~~~~~~vi 175 (362)
.+++. ++..+.|+
T Consensus 266 ~~~~p---L~~~pnV~ 278 (324)
T COG0111 266 PADSP---LWDLPNVI 278 (324)
T ss_pred CCCCh---hhcCCCeE
Confidence 66544 34444454
No 122
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.59 E-value=7.2e-07 Score=90.01 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=76.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+.... +.... ...... +++++++.||+
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~-~l~ell~~aDi 197 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAF--GMKVIAYDPYISP-ERAAQ-------------------LGVELV-SLDELLARADF 197 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCCEEE-cHHHHHhhCCE
Confidence 4899999999999999999887 9999999985321 11111 013333 68888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... +..+.. .+....++++.++|+.|.-+.=..+.+.+.|++.
T Consensus 198 V~l~lP~t~~-----------t~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 247 (526)
T PRK13581 198 ITLHTPLTPE-----------TRGLIG--AEELAKMKPGVRIINCARGGIIDEAALAEALKSG 247 (526)
T ss_pred EEEccCCChH-----------hhcCcC--HHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence 9999985322 122221 4567778999999998876665667777777664
No 123
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.56 E-value=6.7e-07 Score=83.96 Aligned_cols=115 Identities=23% Similarity=0.298 Sum_probs=74.9
Q ss_pred EEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G--~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|||+|++|.++|..++.. | ++++++|+++++++..... +++........++..++|++ ++++||+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~--~~~~el~l~D~~~~~~~g~~~D--------L~~~~~~~~~~~i~~~~~~~-~l~~aDi 69 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK--GLASELVLVDVNEEKAKGDALD--------LSHASAFLATGTIVRGGDYA-DAADADI 69 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCccHHHHHHHh--------HHHhccccCCCeEEECCCHH-HhCCCCE
Confidence 68999999999999999988 6 6899999999888776652 22211110112345556765 5999999
Q ss_pred EEEeccCCCCCCCCCCCCC----CChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGKA----ADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~----~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||+|.++|.... .++. .+...+++..+.|.++. ++.+|++-| .|....
T Consensus 70 VIitag~p~~~~---~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~s-NP~d~~ 121 (300)
T cd00300 70 VVITAGAPRKPG---ETRLDLINRNAPILRSVITNLKKYG-PDAIILVVS-NPVDIL 121 (300)
T ss_pred EEEcCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc-ChHHHH
Confidence 999999886541 1111 12234556666777766 455554433 454443
No 124
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.56 E-value=1.3e-06 Score=88.18 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=76.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |++|++||+.... +...+ -.....+++++++++||+
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~~~l~ell~~aDv 196 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF--GMKVLAYDPYISP-ERAEQ-------------------LGVELVDDLDELLARADF 196 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCCEEcCCHHHHHhhCCE
Confidence 4899999999999999999877 9999999984211 11111 013444678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... +..+.. +.....++++.++|+.|.-+.=..+.|.+.|++.
T Consensus 197 V~l~lPlt~~-----------T~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 246 (525)
T TIGR01327 197 ITVHTPLTPE-----------TRGLIG--AEELAKMKKGVIIVNCARGGIIDEAALYEALEEG 246 (525)
T ss_pred EEEccCCChh-----------hccCcC--HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence 9999985322 122221 3455678999999998886665667777777764
No 125
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.53 E-value=3.7e-07 Score=85.95 Aligned_cols=107 Identities=8% Similarity=0.088 Sum_probs=73.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..|... |++|++||++++..+ +.. ......++++++++||+
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~af--G~~V~~~~~~~~~~~------------~~~---------~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTW--GFPLRCWSRSRKSWP------------GVQ---------SFAGREELSAFLSQTRV 193 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCCC------------Cce---------eecccccHHHHHhcCCE
Confidence 5899999999999999999987 999999998653211 000 01112467788999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.. +++..+. -+.....++++.++|+.+--+.=..+.|.+.|++.
T Consensus 194 vv~~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g 243 (312)
T PRK15469 194 LINLLPNT-----------PETVGII--NQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG 243 (312)
T ss_pred EEECCCCC-----------HHHHHHh--HHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence 99998843 2223332 24567778999999986543222345566667654
No 126
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.53 E-value=1.3e-06 Score=70.13 Aligned_cols=70 Identities=24% Similarity=0.429 Sum_probs=55.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
|||+|||+|.+|......+.+..++.+++ ++|+++++.+.+.+. -++...+|.++.++ +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK------------------YGIPVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------TTSEEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH------------------hcccchhHHHHHHHhhc
Confidence 69999999999999998888775577765 679999998876541 12446788888776 7
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
.|+|++|+|+.
T Consensus 63 ~D~V~I~tp~~ 73 (120)
T PF01408_consen 63 VDAVIIATPPS 73 (120)
T ss_dssp ESEEEEESSGG
T ss_pred CCEEEEecCCc
Confidence 99999998753
No 127
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.50 E-value=1.8e-06 Score=74.75 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=71.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||++....+.... .... ..++++.++.||+
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~-------------------~~~~-~~~l~ell~~aDi 94 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE-------------------FGVE-YVSLDELLAQADI 94 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH-------------------TTEE-ESSHHHHHHH-SE
T ss_pred CEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc-------------------ccce-eeehhhhcchhhh
Confidence 4899999999999999999987 9999999998776542222 1233 3578888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|...+..+ -.| +.....++++.++|+.+--..=..+.+.+.+++.
T Consensus 95 v~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g 144 (178)
T PF02826_consen 95 VSLHLPLTPETRG-----LIN--------AEFLAKMKPGAVLVNVARGELVDEDALLDALESG 144 (178)
T ss_dssp EEE-SSSSTTTTT-----SBS--------HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred hhhhhccccccce-----eee--------eeeeeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence 9999984222111 222 3445668999999985543222334566767653
No 128
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.48 E-value=2e-06 Score=81.04 Aligned_cols=117 Identities=23% Similarity=0.296 Sum_probs=73.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE-EEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL-FFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l-~~t~d~~~a~~~aD 80 (362)
+||+|||+|.+|.++|..|+..+..++++++|+++++.+.+... +.+.... ..... ..+.++++ +++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~d--------L~~~~~~-~~~~~~i~~~~~~~-l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALD--------LEDALAF-LPSPVKIKAGDYSD-CKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhh--------HHHHhhc-cCCCeEEEcCCHHH-hCCCC
Confidence 58999999999999999999982226899999999887765432 2111110 01112 23455554 89999
Q ss_pred EEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+||++++.|... | .++ .-+...+++..+.|.++.+ +.+|++-| .|..+
T Consensus 71 IVIitag~~~~~-g--~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvs-NP~d~ 122 (306)
T cd05291 71 IVVITAGAPQKP-G--ETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVAS-NPVDV 122 (306)
T ss_pred EEEEccCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEec-ChHHH
Confidence 999999877543 2 111 1122345666667777654 44554433 45544
No 129
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=98.47 E-value=1.4e-06 Score=70.52 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=71.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC-------CC-C--ccCCCCCcccChhHhHHHH
Q 017997 211 SAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTDSRIG-------PK-F--LNASVGFGGSCFQKDILNL 280 (362)
Q Consensus 211 ~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~~~i~-------~~-~--~~~g~g~gg~cl~kD~~~l 280 (362)
.+...|+++|.+.+.++..+.|...++++.|+|++++.+++...+--+ ++ + -.+.++|....+.||+.+.
T Consensus 2 ~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~ 81 (122)
T PF14833_consen 2 AGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRLA 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHHH
Confidence 578999999999999999999999999999999999999998764211 11 1 1345678889999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHHH
Q 017997 281 VYICECNGLPEVAEYWKQVIKI 302 (362)
Q Consensus 281 ~~~a~~~g~~~~~~~~~~~~~~ 302 (362)
.+.+++.|+| .|+.+.+++.
T Consensus 82 ~~~a~~~g~~--~p~~~~~~~~ 101 (122)
T PF14833_consen 82 LDLAKEAGVP--LPLGSAARQL 101 (122)
T ss_dssp HHHHHHTT-----HHHHHHHHH
T ss_pred HHHHHHcCCC--CHHHHHHHHH
Confidence 9999999999 7888876543
No 130
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.47 E-value=1e-06 Score=82.08 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=70.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|+|.+|..+|..|... |.+|++++|++++.+.+.+... ..+. .+++.+.++++|+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~~~g~----------------~~~~-~~~l~~~l~~aDi 212 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARITEMGL----------------IPFP-LNKLEEKVAEIDI 212 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHCCC----------------eeec-HHHHHHHhccCCE
Confidence 4799999999999999999988 8999999999987766543110 0011 1345566889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||.|+|.+. . -+...+.++++.+|++.++.|.+|-
T Consensus 213 Vint~P~~i----------------i--~~~~l~~~k~~aliIDlas~Pg~td 247 (287)
T TIGR02853 213 VINTIPALV----------------L--TADVLSKLPKHAVIIDLASKPGGTD 247 (287)
T ss_pred EEECCChHH----------------h--CHHHHhcCCCCeEEEEeCcCCCCCC
Confidence 999987431 1 1234456788999999998887763
No 131
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.46 E-value=1.3e-06 Score=85.75 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=59.1
Q ss_pred ceEEEEcCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~la~--~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (362)
+||+|||+|.||.+.+. .++. ..+|++|++||+++++++.+.... ...+... ...+++.|+|+.+++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~--------~~~~~~~~~~~~I~~ttD~~eal 72 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILA--------KKIVEELGAPLKIEATTDRREAL 72 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH--------HHHHHhcCCCeEEEEeCCHHHHh
Confidence 69999999999998766 3431 123889999999999988765421 1122211 124578899998899
Q ss_pred cCCcEEEEeccCCC
Q 017997 77 SEADIVFVSVNTPT 90 (362)
Q Consensus 77 ~~aDvVii~vptp~ 90 (362)
++||+||++++.+.
T Consensus 73 ~~AD~Vi~ai~~~~ 86 (423)
T cd05297 73 DGADFVINTIQVGG 86 (423)
T ss_pred cCCCEEEEeeEecC
Confidence 99999999998643
No 132
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.45 E-value=1.2e-06 Score=82.41 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=74.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+||+|||+|.+|.++|..|+..+...++.++|+++++.+..... +...........++.++|+++ +++||+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D--------l~~~~~~~~~~~v~~~~dy~~-~~~adi 74 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD--------LQHGSAFLKNPKIEADKDYSV-TANSKV 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH--------HHHhhccCCCCEEEECCCHHH-hCCCCE
Confidence 69999999999999999999874345899999988766543221 111000000124666788886 999999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||++...|... | .++ .-+...+++..+.|.++. ++.++++-| .|...
T Consensus 75 vvitaG~~~k~-g--~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs-NP~d~ 125 (312)
T cd05293 75 VIVTAGARQNE-G--ESRLDLVQRNVDIFKGIIPKLVKYS-PNAILLVVS-NPVDI 125 (312)
T ss_pred EEECCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEcc-ChHHH
Confidence 99998876543 2 111 122234566667777774 455554433 44443
No 133
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.44 E-value=1.1e-05 Score=71.10 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=37.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+|+|+|+|.||..+|..|.+. |++|+++|+++++++.+.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~--G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE--GAKLIVADINEEAVARAAE 69 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 6899999999999999999999 9999999999998887764
No 134
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.44 E-value=1.1e-06 Score=83.23 Aligned_cols=111 Identities=20% Similarity=0.291 Sum_probs=70.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (362)
+||+|||+|.||..+|..++.. |+ +|+++|+++++.+.-.-.. ....... ...+++.++|++ ++++|
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~--gl~~i~LvDi~~~~~~~~~ld~--------~~~~~~~~~~~~I~~~~d~~-~l~~a 75 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK--NLGDVVLFDIVKNIPQGKALDI--------SHSNVIAGSNSKVIGTNNYE-DIAGS 75 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCCchhhHHHHHH--------HhhhhccCCCeEEEECCCHH-HhCCC
Confidence 5899999999999999999988 75 8999999988643211000 0000000 112467778886 59999
Q ss_pred cEEEEeccCCCCCCCCCC---CC----CCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 80 DIVFVSVNTPTKTQGLGA---GK----AADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~---~~----~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
|+||++...|... +..+ ++ ..+...+++..+.|.++.++. ++++
T Consensus 76 DiVI~tag~~~~~-~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a-~~iv 126 (321)
T PTZ00082 76 DVVIVTAGLTKRP-GKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNA-FVIV 126 (321)
T ss_pred CEEEECCCCCCCC-CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEE
Confidence 9999998765432 1000 00 113445677777888877544 4443
No 135
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.44 E-value=1.3e-05 Score=73.08 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=102.4
Q ss_pred CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHH
Q 017997 26 SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTY 105 (362)
Q Consensus 26 G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~ 105 (362)
.++|++++|++++.+.+.+. -+...+++..++++++|+||+||+ |. .
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~------------------~g~~~~~~~~e~~~~aDiIiLaVk-P~--------------~ 55 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKE------------------LGIVASSDAQEAVKEADVVFLAVK-PQ--------------D 55 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHH------------------cCcEEeCChHHHHhhCCEEEEEeC-HH--------------H
Confidence 47899999999998877542 024556677777889999999998 52 4
Q ss_pred HHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCcccccCccccccCCCCeEEEecCCCcchH
Q 017997 106 WESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQ 185 (362)
Q Consensus 106 l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~ 185 (362)
+.++++++.+.+.++++|| |....=+.+.+...+... .. .+ |..|-....- .+....+..+. ..++
T Consensus 56 i~~vl~~l~~~~~~~~~iv--S~~agi~~~~l~~~~~~~---~~-iv-----R~mPn~~~~~-~~g~t~~~~~~--~~~~ 121 (245)
T TIGR00112 56 LEEVLSELKSEKGKDKLLI--SIAAGVTLEKLSQLLGGT---RR-VV-----RVMPNTPAKV-GAGVTAIAANA--NVSE 121 (245)
T ss_pred HHHHHHHHhhhccCCCEEE--EecCCCCHHHHHHHcCCC---Ce-EE-----EECCChHHHH-hCCeEEEecCC--CCCH
Confidence 6788888887776677665 333333445665555321 11 11 2333222111 11112222222 2246
Q ss_pred HHHHHHHHHHhccCCCCcEEeCC--hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 017997 186 KAVKALKDVYAHWVPEDRILTTN--LWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQVAFAVG 252 (362)
Q Consensus 186 ~~~~~~~~l~~~~~~~~~~~~~~--~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~ 252 (362)
+..+.++++|+.++ ..+.+.. ...+-..-=...+ ....++..+...+.+.|++.++..+++.
T Consensus 122 ~~~~~v~~lf~~~G--~~~~v~E~~~~~~talsgsgPA---~~~~~~~al~~~~v~~Gl~~~~A~~lv~ 185 (245)
T TIGR00112 122 EDRALVLALFKAVG--EVVELPEALMDAVTALSGSGPA---YVFLFIEALADAGVKQGLPRELALELAA 185 (245)
T ss_pred HHHHHHHHHHHhCC--CEEEECHHHcchHHhhccCcHH---HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 67789999999986 3444431 1111111112223 3345666677778888999888877765
No 136
>PRK15076 alpha-galactosidase; Provisional
Probab=98.40 E-value=3.1e-06 Score=83.16 Aligned_cols=81 Identities=22% Similarity=0.202 Sum_probs=57.8
Q ss_pred CceEEEEcCChhHHHHHH--HHH--HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhh
Q 017997 1 MVKICCIGAGYVGGPTMA--VIA--LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKH 75 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~--~la--~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a 75 (362)
||||+|||+|.||.+.+. .++ ...++.+|+++|+++++++....- +....... ...+++.|+|..++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l--------~~~~~~~~~~~~~i~~ttD~~ea 72 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV--------ARKLAESLGASAKITATTDRREA 72 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEECCHHHH
Confidence 689999999999977665 554 333467999999999988743320 11111111 12357888998888
Q ss_pred hcCCcEEEEeccCC
Q 017997 76 VSEADIVFVSVNTP 89 (362)
Q Consensus 76 ~~~aDvVii~vptp 89 (362)
+++||+||+++..+
T Consensus 73 l~dADfVv~ti~vg 86 (431)
T PRK15076 73 LQGADYVINAIQVG 86 (431)
T ss_pred hCCCCEEeEeeeeC
Confidence 99999999998765
No 137
>PLN02928 oxidoreductase family protein
Probab=98.39 E-value=4.4e-06 Score=79.91 Aligned_cols=120 Identities=15% Similarity=0.117 Sum_probs=72.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..+|..+... |.+|++||++...-....-+ .+ ......+... . . ...++++++++||+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~af--G~~V~~~dr~~~~~~~~~~~-~~--~~~~~~~~~~---~-~-~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPF--GVKLLATRRSWTSEPEDGLL-IP--NGDVDDLVDE---K-G-GHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCChhhhhhhc-cc--cccccccccc---c-C-cccCHHHHHhhCCE
Confidence 4899999999999999999877 99999999873221110000 00 0000000000 0 1 12468888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|.... +..+.. ++....++++.++|+.+--+.=..+.|.+.|.+.
T Consensus 230 Vvl~lPlt~~-----------T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g 279 (347)
T PLN02928 230 VVLCCTLTKE-----------TAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALESG 279 (347)
T ss_pred EEECCCCChH-----------hhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999884321 122221 4556678999999986642222334566666653
No 138
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.36 E-value=6e-06 Score=80.72 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=75.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|||||+|.+|..+|..+..- |.+|++||+.+.. .. +......++++.++.||+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~f--Gm~V~~~d~~~~~----~~-------------------~~~~~~~~l~ell~~sDi 206 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESL--GMRVYFYDIEDKL----PL-------------------GNARQVGSLEELLAQSDV 206 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCccc----cc-------------------CCceecCCHHHHHhhCCE
Confidence 4799999999999999998876 9999999985321 00 123345578898999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|.+++|... ++..+.. ++....++++.++|+.|--+.=..+.|.+.|++.
T Consensus 207 Vslh~Plt~-----------~T~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g 256 (409)
T PRK11790 207 VSLHVPETP-----------STKNMIG--AEELALMKPGAILINASRGTVVDIDALADALKSG 256 (409)
T ss_pred EEEcCCCCh-----------HHhhccC--HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcC
Confidence 999987421 2222221 3455678999999998765555566777777653
No 139
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.36 E-value=9.4e-06 Score=76.55 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=69.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||+..... . ..+.. .++++.++.||+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~f--gm~V~~~d~~~~~~----~-------------------~~~~~-~~l~ell~~sDv 199 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAF--GAKVVYYSTSGKNK----N-------------------EEYER-VSLEELLKTSDI 199 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhc--CCEEEEECCCcccc----c-------------------cCcee-ecHHHHhhcCCE
Confidence 4799999999999999888765 89999999853110 0 01222 367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~ 143 (362)
|++++|-... +..+. -+.....++++.++|+.|=-+.=..+.|.+.|++
T Consensus 200 v~lh~Plt~~-----------T~~li--~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 200 ISIHAPLNEK-----------TKNLI--AYKELKLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred EEEeCCCCch-----------hhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 9999884322 12221 1344566899999998664332234566666665
No 140
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.36 E-value=5e-06 Score=76.58 Aligned_cols=121 Identities=22% Similarity=0.299 Sum_probs=77.7
Q ss_pred EEEEcC-ChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 4 ICCIGA-GYVGGPTMAVIALKC--PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 4 I~VIGl-G~~G~~lA~~la~~~--~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|||+ |.||..+|..|+..+ ...+|+++|+++++++..... +.+........++++++|+.+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~i~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMD--------LQDAVEPLADIKVSITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHH--------HHHhhhhccCcEEEECCchHHHhCCCC
Confidence 689999 999999999999882 227999999998777654431 111111111235778888777799999
Q ss_pred EEEEeccCCCCCCCCCC--CCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 81 IVFVSVNTPTKTQGLGA--GKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 81 vVii~vptp~~~~g~~~--~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+||++...|... |.+. .-.-+...+++..+.+.++. ++.++++- |.|.+..-
T Consensus 73 iVv~t~~~~~~~-g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~-tNP~d~~t 126 (263)
T cd00650 73 VVIITAGVGRKP-GMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV-SNPVDIIT 126 (263)
T ss_pred EEEECCCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-cCcHHHHH
Confidence 999987655332 1100 00122344567777777776 55566554 46665543
No 141
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.33 E-value=4.8e-06 Score=77.98 Aligned_cols=95 Identities=14% Similarity=0.241 Sum_probs=70.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.|++|||.|.+|..++..|... |.+|+++|+++++.+...+-.. .....++..+.+.++|+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~G~-----------------~~~~~~~l~~~l~~aDi 213 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEMGL-----------------SPFHLSELAEEVGKIDI 213 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC-----------------eeecHHHHHHHhCCCCE
Confidence 5899999999999999999988 8999999999887766543110 01111345566889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||.|+|.+. ..+...+.++++.+|++.++-|.++
T Consensus 214 VI~t~p~~~------------------i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 214 IFNTIPALV------------------LTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred EEECCChhh------------------hhHHHHHcCCCCcEEEEEccCCCCc
Confidence 999987321 1234556678899999888777664
No 142
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.33 E-value=1.2e-05 Score=75.95 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=73.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++||||+|.+|..+|..+. .+ |.+|..||+++. -+.-.. .+.++.+ +++.++++|+
T Consensus 147 ktvGIiG~GrIG~avA~r~~-~F-gm~v~y~~~~~~-~~~~~~-------------------~~~~y~~-l~ell~~sDi 203 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLK-GF-GMKVLYYDRSPN-PEAEKE-------------------LGARYVD-LDELLAESDI 203 (324)
T ss_pred CEEEEECCCHHHHHHHHHHh-cC-CCEEEEECCCCC-hHHHhh-------------------cCceecc-HHHHHHhCCE
Confidence 58999999999999999998 43 899999999864 111111 1244555 7888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|.+.+|-. ++..++.. +...+.++++.++|+++=-+.=..+.+.+.|++.
T Consensus 204 i~l~~Plt-----------~~T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g 253 (324)
T COG1052 204 ISLHCPLT-----------PETRHLIN--AEELAKMKPGAILVNTARGGLVDEQALIDALKSG 253 (324)
T ss_pred EEEeCCCC-----------hHHhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence 99998742 23333322 3556678999999986643332345666667654
No 143
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.31 E-value=1.2e-05 Score=76.13 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=71.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++||||+|.+|..+|..+...+ |.+|..||+....-. ... ...+. .+++++++.||+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~~~~~~~~~~-~~~-------------------~~~~~-~~l~ell~~sDv 203 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGF-NMPILYNARRHHKEA-EER-------------------FNARY-CDLDTLLQESDF 203 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcC-CCEEEEECCCCchhh-HHh-------------------cCcEe-cCHHHHHHhCCE
Confidence 48999999999999999886232 889999998632110 000 01233 378888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-.. ++..+. -+.....++++.++|+.+=-+.=..+.|.+.|++.
T Consensus 204 v~lh~plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 253 (323)
T PRK15409 204 VCIILPLTD-----------ETHHLF--GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG 253 (323)
T ss_pred EEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999988432 222222 13456678999999986643333345677777653
No 144
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.31 E-value=3e-06 Score=80.21 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=71.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~a 79 (362)
+||+|||+|.||..+|..++.. | .++.++|+++++.+...-.. ....... ...+++.++|++ ++++|
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~--~~~~l~L~Di~~~~~~g~~lDl--------~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQK--NLGDVVLYDVIKGVPQGKALDL--------KHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHC--CCCeEEEEECCCccchhHHHHH--------hhhccccCCCeEEEeCCCHH-HhCCC
Confidence 6999999999999999999988 6 68999999987654321100 0000000 012456667887 58999
Q ss_pred cEEEEeccCCCCCCCCCC--CCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 80 DIVFVSVNTPTKTQGLGA--GKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~--~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
|+||++...|... ++.. .-..+...+++..+.+.++.+ +.++++- |.|..
T Consensus 75 DiVVitag~~~~~-g~~r~dll~~n~~i~~~i~~~i~~~~p-~a~vivv-sNP~d 126 (319)
T PTZ00117 75 DVVVITAGVQRKE-EMTREDLLTINGKIMKSVAESVKKYCP-NAFVICV-TNPLD 126 (319)
T ss_pred CEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cChHH
Confidence 9999998654322 1000 000112345677778888764 4444332 34443
No 145
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.30 E-value=3.4e-06 Score=81.31 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=74.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|||||+|.||..+|..+... |++|++||+..... . +... ..++++.+++||+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~--G~~V~~~Dp~~~~~----~-------------------~~~~-~~~l~ell~~aDi 170 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGL--GWKVLVCDPPRQEA----E-------------------GDGD-FVSLERILEECDV 170 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCccccc----c-------------------cCcc-ccCHHHHHhhCCE
Confidence 4799999999999999999987 99999999753211 0 0111 2367888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-..+ | ...+..+.. +.....+++++++|+.|.-++-..+.+.+.+++.
T Consensus 171 V~lh~Plt~~--g-----~~~T~~li~--~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 171 ISLHTPLTKE--G-----EHPTRHLLD--EAFLASLRPGAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred EEEeCcCCCC--c-----cccccccCC--HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 9999884221 0 111222221 3455668999999998876665666777767653
No 146
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.30 E-value=2.3e-06 Score=79.28 Aligned_cols=72 Identities=26% Similarity=0.358 Sum_probs=56.8
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||.| .||.|||..|.++ |++|++|++.. .++++++++||
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~--gatVtv~~~~t---------------------------------~~l~e~~~~AD 204 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQA--HCSVTVVHSRS---------------------------------TDAKALCRQAD 204 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEECCCC---------------------------------CCHHHHHhcCC
Confidence 479999996 9999999999999 99999997641 24667789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||.|++.|.. +... .++++++||+.|+
T Consensus 205 IVIsavg~~~~--------------v~~~------~ik~GaiVIDvgi 232 (301)
T PRK14194 205 IVVAAVGRPRL--------------IDAD------WLKPGAVVIDVGI 232 (301)
T ss_pred EEEEecCChhc--------------ccHh------hccCCcEEEEecc
Confidence 99999986532 2221 2789999988654
No 147
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.30 E-value=4.7e-06 Score=69.74 Aligned_cols=89 Identities=20% Similarity=0.132 Sum_probs=60.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||.|..|...|.+|.+. |.+|++-.+... ..++.++. .++. .+.+++++.+|
T Consensus 5 k~IAViGyGsQG~a~AlNLrDS--G~~V~Vglr~~s~s~~~A~~~-------------------Gf~v-~~~~eAv~~aD 62 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDS--GVNVIVGLREGSASWEKAKAD-------------------GFEV-MSVAEAVKKAD 62 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHC--C-EEEEEE-TTCHHHHHHHHT-------------------T-EC-CEHHHHHHC-S
T ss_pred CEEEEECCChHHHHHHHHHHhC--CCCEEEEecCCCcCHHHHHHC-------------------CCee-ccHHHHHhhCC
Confidence 5899999999999999999999 999998887655 44444431 2443 45778899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEee
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKS 127 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~S 127 (362)
+|++.+|.. .-.++. ++|.++++++++++...
T Consensus 63 vV~~L~PD~---------------~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 63 VVMLLLPDE---------------VQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp EEEE-S-HH---------------HHHHHHHHHHHHHS-TT-EEEESS
T ss_pred EEEEeCChH---------------HHHHHHHHHHHhhCCCCCEEEeCC
Confidence 999998732 124454 89999999999988644
No 148
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.25 E-value=4.7e-05 Score=70.43 Aligned_cols=151 Identities=15% Similarity=0.058 Sum_probs=88.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh-hhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~aDv 81 (362)
+|+|||.|.||.-+|..|.++ ||.|++.||.. .+.+++.. |. ..-+++.+ +-+..|+
T Consensus 54 ~IaIIGfGnmGqflAetli~a--Gh~li~hsRsd--yssaa~~y-----------------g~-~~ft~lhdlcerhpDv 111 (480)
T KOG2380|consen 54 VIAIIGFGNMGQFLAETLIDA--GHGLICHSRSD--YSSAAEKY-----------------GS-AKFTLLHDLCERHPDV 111 (480)
T ss_pred EEEEEecCcHHHHHHHHHHhc--CceeEecCcch--hHHHHHHh-----------------cc-cccccHHHHHhcCCCE
Confidence 799999999999999999999 99999999975 33333310 11 11233333 2368999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-cCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEe-----eC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQIL-----SN 155 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~-----~~ 155 (362)
|+.||.. ..+..+++..... ++.+++++...++..-..+.+.+.|++ +|.++ ++
T Consensus 112 vLlctsi---------------lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk-----dfDIlctHpmfG 171 (480)
T KOG2380|consen 112 VLLCTSI---------------LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-----DFDILCTHPMFG 171 (480)
T ss_pred EEEEehh---------------hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc-----ccceEeecCCcC
Confidence 9999742 1345666666555 778888876544422222223334433 33332 34
Q ss_pred CcccccCccccccCCCCeEEEecC--CCcchHHHHHHHHHHHhccCC
Q 017997 156 PEFLAEGTAIQDLFNPDRVLIGGR--ETPEGQKAVKALKDVYAHWVP 200 (362)
Q Consensus 156 Pe~~~~g~a~~~~~~~~~viiG~~--~~~~~~~~~~~~~~l~~~~~~ 200 (362)
|+...++. ...+-|++-.. ....-++..|.+.++|.+.+.
T Consensus 172 Pksvnh~w-----qglpfVydkvRig~~~~r~ercE~fleIf~cegc 213 (480)
T KOG2380|consen 172 PKSVNHEW-----QGLPFVYDKVRIGYAASRPERCEFFLEIFACEGC 213 (480)
T ss_pred CCcCCCcc-----ccCceEEEEeeccccccchHHHHHHHHHHHhcCC
Confidence 44222221 22223322211 111226788999999998864
No 149
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.23 E-value=1.3e-05 Score=75.44 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=70.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~aDv 81 (362)
||+|||+|.+|.++|..|+.++..-++.++|+++++.+..... +..........+.+. +.|+++ +++||+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D--------L~~~~~~~~~~~~~i~~~~y~~-~~~aDi 71 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD--------FHHATALTYSTNTKIRAGDYDD-CADADI 71 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH--------HHhhhccCCCCCEEEEECCHHH-hCCCCE
Confidence 7999999999999999999873223899999987765533211 000000000112222 456665 999999
Q ss_pred EEEeccCCCCCCCCCCCC------CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGK------AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~------~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||++...|... | .++ ..+.+.+++..+.+.++. ++.++++ -|.|..+.
T Consensus 72 vvitaG~~~kp-g--~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~iv-vsNPvDv~ 125 (307)
T cd05290 72 IVITAGPSIDP-G--NTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIIL-ITNPLDIA 125 (307)
T ss_pred EEECCCCCCCC-C--CCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-ecCcHHHH
Confidence 99998876543 1 121 122345566666777665 4445443 34565543
No 150
>PLN02602 lactate dehydrogenase
Probab=98.22 E-value=9e-06 Score=77.62 Aligned_cols=118 Identities=21% Similarity=0.294 Sum_probs=72.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+||+|||+|.+|.++|..++..+...++.++|+++++++..... +.+.........++.++|+++ +++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D--------L~~~~~~~~~~~i~~~~dy~~-~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD--------LQHAAAFLPRTKILASTDYAV-TAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH--------HHhhhhcCCCCEEEeCCCHHH-hCCCCE
Confidence 59999999999999999998873334899999998776543321 111110000123444467776 999999
Q ss_pred EEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||++...|... | .++ ..+...+++..+.|.++.+ +.++++-| .|..+
T Consensus 109 VVitAG~~~k~-g--~tR~dll~~N~~I~~~i~~~I~~~~p-~~ivivvt-NPvdv 159 (350)
T PLN02602 109 CIVTAGARQIP-G--ESRLNLLQRNVALFRKIIPELAKYSP-DTILLIVS-NPVDV 159 (350)
T ss_pred EEECCCCCCCc-C--CCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEec-CchHH
Confidence 99998766433 2 111 1122345566667777654 44544433 45544
No 151
>PLN02306 hydroxypyruvate reductase
Probab=98.21 E-value=2.7e-05 Score=75.41 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=72.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|+|||+|.+|..+|..+.+.+ |.+|++||+.... .+..... .....+.+.. ........+++++++.|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~L~ell~~s 237 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQ-------PVTWKRASSMEEVLREA 237 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhhcccccccccc-------cccccccCCHHHHHhhC
Confidence 47999999999999999986443 8999999987532 1110000 0000000000 00123345789999999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~ 143 (362)
|+|++++|-.. ++..+.. ++....++++.++|+.+--+.=..+.+.+.|++
T Consensus 238 DiV~lh~Plt~-----------~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 238 DVISLHPVLDK-----------TTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred CEEEEeCCCCh-----------hhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 99999987421 2222222 345567899999998663222223456666655
No 152
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=98.19 E-value=1.1e-05 Score=75.12 Aligned_cols=123 Identities=24% Similarity=0.317 Sum_probs=73.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+|.+|.++|..|+....+.++.++|+++++.+.... ++.+...-. ...++..+.++++ ++++|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~--------DL~~~~~~~~~~~~i~~~~~y~~-~~~aD 71 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVAL--------DLSHAAAPLGSDVKITGDGDYED-LKGAD 71 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhc--------chhhcchhccCceEEecCCChhh-hcCCC
Confidence 6999999999999999999877566799999999554432211 111110000 0122333234655 99999
Q ss_pred EEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHH
Q 017997 81 IVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEA 136 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~--~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~ 136 (362)
+|+++..-|..+ |+... -.-+.+.+++..+++.++.+ +.++++ -|.|..+.-.
T Consensus 72 iVvitAG~prKp-GmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlV-vtNPvD~~ty 126 (313)
T COG0039 72 IVVITAGVPRKP-GMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLV-VTNPVDILTY 126 (313)
T ss_pred EEEEeCCCCCCC-CCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEE-ecCcHHHHHH
Confidence 999998766543 32100 02233556666677777765 444433 3567665543
No 153
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.18 E-value=1.6e-05 Score=75.11 Aligned_cols=114 Identities=23% Similarity=0.352 Sum_probs=69.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~~~ 78 (362)
+||+|||+|.+|.++|..|+.. |. ++.++|+++++++..... +.+... .. .+... ++++++ +++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~D--------l~~~~~-~~-~~~~i~~~~~~~-~~~ 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMD--------LSHAVP-FT-SPTKIYAGDYSD-CKD 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHH--------HHhhcc-cc-CCeEEEeCCHHH-hCC
Confidence 5899999999999999999988 66 899999998876654321 111000 00 12222 455654 999
Q ss_pred CcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||+||++...|..+ | .++ ..+...+++..+.+.++.. +.++++-| .|..+
T Consensus 74 adivIitag~~~k~-g--~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vivvs-NP~d~ 127 (315)
T PRK00066 74 ADLVVITAGAPQKP-G--ETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLVAS-NPVDI 127 (315)
T ss_pred CCEEEEecCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEcc-CcHHH
Confidence 99999998876543 1 111 1122345555666666654 44544433 45443
No 154
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.18 E-value=2.1e-05 Score=74.26 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=68.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|..+|..+..- |.+|++||+.... .. ... ..+++++++.||+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~f--g~~V~~~~~~~~~--~~----------------------~~~-~~~l~ell~~sDi 200 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQAL--GMKVLYAEHKGAS--VC----------------------REG-YTPFEEVLKQADI 200 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCccc--cc----------------------ccc-cCCHHHHHHhCCE
Confidence 4899999999999999888665 8999999875210 00 001 1367888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-..+ +..+. -+.....++++.++|+.+=-..=..+.|.+.|++.
T Consensus 201 v~l~~Plt~~-----------T~~li--~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g 250 (314)
T PRK06932 201 VTLHCPLTET-----------TQNLI--NAETLALMKPTAFLINTGRGPLVDEQALLDALENG 250 (314)
T ss_pred EEEcCCCChH-----------Hhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 9999884221 12221 13445668999999986643322345666667653
No 155
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.14 E-value=1.3e-05 Score=76.11 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=69.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|.+|...+..+....+..+|.+||+++++.+.+.+.. ++ ..-.+..++++++++++||+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------------~~-~g~~v~~~~~~~eav~~aDi 195 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------------SD-YEVPVRAATDPREAVEGCDI 195 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hh-hCCcEEEeCCHHHHhccCCE
Confidence 479999999999998887776544689999999999988775421 00 01125667899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
|++|+|+.. | +.. .+.+++++.|..-++..|+
T Consensus 196 VitaT~s~~----------P----~~~-----~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 196 LVTTTPSRK----------P----VVK-----ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred EEEecCCCC----------c----Eec-----HHHcCCCCEEEecCCCCcc
Confidence 999987531 1 111 2346889888654544444
No 156
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.13 E-value=1.3e-05 Score=75.77 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=56.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|||+|.+|..++..+....+..+|++|+|++++.+.+.+.. ++ ....+...+++++++.+||+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~------------~~-~g~~~~~~~~~~~av~~aDI 192 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAEL------------RA-QGFDAEVVTDLEAAVRQADI 192 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH------------Hh-cCCceEEeCCHHHHHhcCCE
Confidence 479999999999999987765333689999999999988876521 00 01135667788888999999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
|+.|++.+
T Consensus 193 Vi~aT~s~ 200 (314)
T PRK06141 193 ISCATLST 200 (314)
T ss_pred EEEeeCCC
Confidence 98886643
No 157
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.13 E-value=1.3e-05 Score=77.06 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=71.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|||||+|.||..+|..+..- |.+|.+||+.... .+ .... ..++++.+++||+
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~--G~~V~~~dp~~~~-----~~------------------~~~~-~~~L~ell~~sDi 170 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEAL--GIKTLLCDPPRAD-----RG------------------DEGD-FRSLDELVQEADI 170 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCcccc-----cc------------------cccc-cCCHHHHHhhCCE
Confidence 5899999999999999999887 9999999964211 00 0011 2467888899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-..+ | ...+..+. -++....+++++++|+.|=-+.=..+.|.+.|++.
T Consensus 171 I~lh~PLt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 171 LTFHTPLFKD--G-----PYKTLHLA--DEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred EEEeCCCCCC--c-----cccccccc--CHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 9999874221 1 11112221 13455678999999987653333345666666653
No 158
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.12 E-value=1.6e-05 Score=72.97 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=49.1
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
||||+|+|+ |.||..++..+.+. +++++++ +|+++++.... . ...+..++|+++++++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~~~~~~~-~------------------~~~i~~~~dl~~ll~~ 60 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPGSPLVGQ-G------------------ALGVAITDDLEAVLAD 60 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCcccccc-C------------------CCCccccCCHHHhccC
Confidence 689999998 99999999888764 3677665 78876654322 0 0124456788887778
Q ss_pred CcEEEEecc
Q 017997 79 ADIVFVSVN 87 (362)
Q Consensus 79 aDvVii~vp 87 (362)
+|+|+.++|
T Consensus 61 ~DvVid~t~ 69 (257)
T PRK00048 61 ADVLIDFTT 69 (257)
T ss_pred CCEEEECCC
Confidence 999998864
No 159
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.08 E-value=6.5e-05 Score=71.04 Aligned_cols=102 Identities=9% Similarity=0.116 Sum_probs=69.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|||+|.+|..+|..+..- |.+|++||+... .. ... ..+++++++.||+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f--gm~V~~~~~~~~------~~-------------------~~~-~~~l~ell~~sDi 200 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF--GMRVLIGQLPGR------PA-------------------RPD-RLPLDELLPQVDA 200 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCC------cc-------------------ccc-ccCHHHHHHhCCE
Confidence 4799999999999999988765 999999998521 00 001 1257888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
|++++|-.. ++..+. -+.....++++.++|+.+=-+.=..+.|.+.|++.
T Consensus 201 v~l~lPlt~-----------~T~~li--~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g 250 (317)
T PRK06487 201 LTLHCPLTE-----------HTRHLI--GARELALMKPGALLINTARGGLVDEQALADALRSG 250 (317)
T ss_pred EEECCCCCh-----------HHhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999988422 122221 13445668999999986643222345666667653
No 160
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.05 E-value=3.3e-05 Score=71.26 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=47.1
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCC-HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDIS-VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~-~d~~-~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
||||+|+| +|.||..++..+.+. +++++++ +|+. ++...+ ...++.. .....+.+++|+++...
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~~~~~~~-----------~~~~~~~-~~~~gv~~~~d~~~l~~ 67 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHGSSLQGT-----------DAGELAG-IGKVGVPVTDDLEAVET 67 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccccCC-----------CHHHhcC-cCcCCceeeCCHHHhcC
Confidence 68999999 699999999999875 4787666 5743 322100 0000000 00112566788877545
Q ss_pred CCcEEEEecc
Q 017997 78 EADIVFVSVN 87 (362)
Q Consensus 78 ~aDvVii~vp 87 (362)
.+|+|+.|++
T Consensus 68 ~~DvVIdfT~ 77 (266)
T TIGR00036 68 DPDVLIDFTT 77 (266)
T ss_pred CCCEEEECCC
Confidence 7899999975
No 161
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.05 E-value=2e-05 Score=63.95 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=46.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
|||+|+|+ |.||..++..+.+. +++++. ++|++++... | ....++... ....+.+++|+++++..+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~~~~~----g------~d~g~~~~~-~~~~~~v~~~l~~~~~~~ 68 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKPSAKV----G------KDVGELAGI-GPLGVPVTDDLEELLEEA 68 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTTSTTT----T------SBCHHHCTS-ST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCCcccc----c------chhhhhhCc-CCcccccchhHHHhcccC
Confidence 79999999 99999999999984 388855 5577651110 0 111111100 112356778999988899
Q ss_pred cEEEEec
Q 017997 80 DIVFVSV 86 (362)
Q Consensus 80 DvVii~v 86 (362)
|++|-..
T Consensus 69 DVvIDfT 75 (124)
T PF01113_consen 69 DVVIDFT 75 (124)
T ss_dssp SEEEEES
T ss_pred CEEEEcC
Confidence 9999885
No 162
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.04 E-value=2.6e-05 Score=74.81 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=82.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE--ecCHHhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF--STDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~ 77 (362)
||||-|||+|.+|.++|..|+++ | ++|++.||+.++++++...... .++. -.+.+ .....++++
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs~~~~~~i~~~~~~----~v~~-------~~vD~~d~~al~~li~ 67 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRSKEKCARIAELIGG----KVEA-------LQVDAADVDALVALIK 67 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhhccc----ccee-------EEecccChHHHHHHHh
Confidence 79999999999999999999999 6 8999999999999998653211 0000 00111 122445688
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHH----------------HHhh-cCCCCEEEEeeCCccccHHHHHHH
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARV----------------IADV-SKSDKIVVEKSTVPVKTAEAIEKI 140 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~----------------i~~~-l~~~~iVv~~STv~~gt~~~l~~~ 140 (362)
+.|+||-|.|.+.+ .+.++.+++. +.+. -+.+.+++....+.||.+..+...
T Consensus 68 ~~d~VIn~~p~~~~-----------~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~ 136 (389)
T COG1748 68 DFDLVINAAPPFVD-----------LTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAY 136 (389)
T ss_pred cCCEEEEeCCchhh-----------HHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHH
Confidence 99999999985432 2333333221 1111 123555666667888877655433
Q ss_pred HHhc-c-C--CCceEEeeCCccc
Q 017997 141 LTHN-S-K--GIKFQILSNPEFL 159 (362)
Q Consensus 141 l~~~-~-~--g~~~~v~~~Pe~~ 159 (362)
..++ . . ..+..++..|++-
T Consensus 137 a~~~~~~~i~si~iy~g~~g~~~ 159 (389)
T COG1748 137 AAKELFDEIESIDIYVGGLGEHG 159 (389)
T ss_pred HHHHhhccccEEEEEEecCCCCC
Confidence 2221 1 1 2344555666654
No 163
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.02 E-value=4.6e-05 Score=70.27 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=45.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|||+|.||..++..+.+. ++.++.++ +++ ...+...+. .......++|+++...+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-~~~~l~~v~~~~-~~~~~~~~~----------------~~~~~~~~~d~~~l~~~~ 62 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-PDLRVDWVIVPE-HSIDAVRRA----------------LGEAVRVVSSVDALPQRP 62 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-CCceEEEEEEcC-CCHHHHhhh----------------hccCCeeeCCHHHhccCC
Confidence 79999999999999999998875 35665554 332 111111110 001245677887643568
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|+|++|.|+
T Consensus 63 DvVve~t~~ 71 (265)
T PRK13303 63 DLVVECAGH 71 (265)
T ss_pred CEEEECCCH
Confidence 999999764
No 164
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=2.1e-05 Score=73.10 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=55.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVD-ISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d-~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
.+|+||| .|.||.|||..|.++ |++|++|+ +++ +++++++.|
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~--g~tVtv~~~rT~----------------------------------~l~e~~~~A 202 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAA--NATVTIAHSRTR----------------------------------DLPAVCRRA 202 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhC--CCEEEEECCCCC----------------------------------CHHHHHhcC
Confidence 4899999 999999999999998 99999995 331 345668899
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
|+||.|++.|.. +.+. .+++|++|++.++
T Consensus 203 DIVIsavg~~~~--------------v~~~------~lk~GavVIDvGi 231 (296)
T PRK14188 203 DILVAAVGRPEM--------------VKGD------WIKPGATVIDVGI 231 (296)
T ss_pred CEEEEecCChhh--------------cchh------eecCCCEEEEcCC
Confidence 999999986531 2221 2789999987543
No 165
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.97 E-value=4.8e-05 Score=72.01 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=68.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~-------~V~~~d~~~~~--~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
+||+|||+ |.+|.++|..|+.. |. ++.++|++++. ++...- ++...... ...+.+.+++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~--------Dl~~~~~~-~~~~~~i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG--EMFGPDQPVILQLLELPQALKALEGVAM--------ELEDCAFP-LLAEIVITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc--cccCCCCceEEEEEecCCcccccceeeh--------hhhhcccc-ccCceEEecC
Confidence 69999999 99999999999977 44 79999995432 322111 01100000 0112334444
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
..+++++||+||++-..|... | .++ ..+.+.+++..+.|.++.+++.++++-| .|..
T Consensus 72 ~~~~~~daDivvitaG~~~k~-g--~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD 132 (322)
T cd01338 72 PNVAFKDADWALLVGAKPRGP-G--MERADLLKANGKIFTAQGKALNDVASRDVKVLVVG-NPCN 132 (322)
T ss_pred cHHHhCCCCEEEEeCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec-CcHH
Confidence 344599999999998876543 2 111 1123446667777777765455555544 4443
No 166
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.96 E-value=3.5e-05 Score=69.25 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=38.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
|+|.|||+|.+|.++|..|.+. ||+|+++|+|+++++...+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~ 41 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA 41 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh
Confidence 7999999999999999999999 9999999999999988443
No 167
>PRK05442 malate dehydrogenase; Provisional
Probab=97.95 E-value=7.3e-05 Score=70.83 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=70.4
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCC-----eEEEEeCCHH--HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSI-----EVAVVDISVS--RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV 72 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~-----~V~~~d~~~~--~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (362)
++||+|||+ |.+|.++|..|+..+--- ++.++|+++. +++.... ++.+..... ..+.+.+++.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~--------Dl~~~~~~~-~~~~~i~~~~ 74 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVM--------ELDDCAFPL-LAGVVITDDP 74 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeeh--------hhhhhhhhh-cCCcEEecCh
Confidence 369999998 999999999988752112 7999999642 2322111 111111000 1123444444
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
.+++++||+||++-..|... | .++ ..+.+.+++..+.|.++.+++.++++-| .|....
T Consensus 75 y~~~~daDiVVitaG~~~k~-g--~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs-NPvDv~ 136 (326)
T PRK05442 75 NVAFKDADVALLVGARPRGP-G--MERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG-NPANTN 136 (326)
T ss_pred HHHhCCCCEEEEeCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC-CchHHH
Confidence 45599999999998765433 2 111 1122445666777777766666665544 555443
No 168
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.95 E-value=0.00014 Score=61.20 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=57.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH-HHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIN-AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~-~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+++.|+|-|.+|..+|..|... |-+|+++|+||-+.- +..+| ++.. +.++++..+|
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~alqA~~dG--------------------f~v~-~~~~a~~~ad 80 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIRALQAAMDG--------------------FEVM-TLEEALRDAD 80 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHHHHHHHHTT---------------------EEE--HHHHTTT-S
T ss_pred CEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHHHHHhhhcC--------------------cEec-CHHHHHhhCC
Confidence 4789999999999999999998 999999999996543 33332 4443 5778899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
++|.++.... ..+ .+..+.++++.+|.+....+..
T Consensus 81 i~vtaTG~~~---------vi~--------~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 81 IFVTATGNKD---------VIT--------GEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp EEEE-SSSSS---------SB---------HHHHHHS-TTEEEEESSSSTTS
T ss_pred EEEECCCCcc---------ccC--------HHHHHHhcCCeEEeccCcCcee
Confidence 9999976421 011 2333457889988765544433
No 169
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.94 E-value=4.9e-05 Score=70.32 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=68.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++.|+|+|.+|.+++..|++. |++|++++|++++.+.+.+.... .+.....+..+....++|+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~--g~~v~v~~R~~~~~~~la~~~~~--------------~~~~~~~~~~~~~~~~~Di 181 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA--DCNVIIANRTVSKAEELAERFQR--------------YGEIQAFSMDELPLHRVDL 181 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHhh--------------cCceEEechhhhcccCccE
Confidence 4799999999999999999998 89999999999988877542100 0112222211122458999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||-|+|.....+. ....+. ...++++.+|++.++.|+.|
T Consensus 182 vInatp~gm~~~~----~~~~~~---------~~~l~~~~~v~D~~y~p~~T 220 (270)
T TIGR00507 182 IINATSAGMSGNI----DEPPVP---------AEKLKEGMVVYDMVYNPGET 220 (270)
T ss_pred EEECCCCCCCCCC----CCCCCC---------HHHcCCCCEEEEeccCCCCC
Confidence 9999875422100 000110 13467888999999988877
No 170
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.94 E-value=8.6e-05 Score=70.11 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=53.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.||..++..|...+ +++|+++|+++++.+.+.+.. .......++..+++.++|+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~----------------g~~~~~~~~~~~~l~~aDv 241 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKEL----------------GGNAVPLDELLELLNEADV 241 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHc----------------CCeEEeHHHHHHHHhcCCE
Confidence 68999999999999999998852 478999999999887765421 0111111345566889999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
||.|++.|
T Consensus 242 Vi~at~~~ 249 (311)
T cd05213 242 VISATGAP 249 (311)
T ss_pred EEECCCCC
Confidence 99998865
No 171
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.94 E-value=0.0001 Score=64.60 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=50.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|++||+|.+|..+...+-..-..+ .|.+||++.+++..+.+.. ..+.++++++.+++.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------------------~~~~~s~ide~~~~~D 62 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------------------GRRCVSDIDELIAEVD 62 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------------------CCCccccHHHHhhccc
Confidence 79999999999998887665420013 5889999999998776531 1123478888789999
Q ss_pred EEEEec
Q 017997 81 IVFVSV 86 (362)
Q Consensus 81 vVii~v 86 (362)
+++.|-
T Consensus 63 lvVEaA 68 (255)
T COG1712 63 LVVEAA 68 (255)
T ss_pred eeeeeC
Confidence 999995
No 172
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.92 E-value=6.9e-05 Score=70.43 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=68.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-c--CHHhhhc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-T--DVEKHVS 77 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~--d~~~a~~ 77 (362)
|||+|||+ |.+|.++|..|+..+.-.++.++|++ +.+ |.. .++.+. .....++.+ . |+.++++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~----g~a----lDL~~~---~~~~~i~~~~~~~~~y~~~~ 67 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTP----GVA----ADLSHI---NTPAKVTGYLGPEELKKALK 67 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccc----eee----hHhHhC---CCcceEEEecCCCchHHhcC
Confidence 79999999 99999999999887212489999998 221 110 001110 001235542 2 3334599
Q ss_pred CCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+||+||++...|..+ |. +| ..+.+.+++..+.|.++. ++.++++- |.|..+
T Consensus 68 daDivvitaG~~~k~-g~--tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivv-tNPvDv 122 (310)
T cd01337 68 GADVVVIPAGVPRKP-GM--TRDDLFNINAGIVRDLATAVAKAC-PKALILII-SNPVNS 122 (310)
T ss_pred CCCEEEEeCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc-cCchhh
Confidence 999999999877543 21 11 122345566667777774 55555443 455544
No 173
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.92 E-value=8.9e-05 Score=70.16 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=70.4
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSI-------EVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD 71 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~-------~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d 71 (362)
.||+|||+ |.+|.++|..|... |. ++.++|+++ ++++..... +.+.... ...+...+++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~D--------l~~~~~~-~~~~~~i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVLHLLDIPPAMKALEGVAME--------LEDCAFP-LLAGVVATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEEEEEecCCcccccchHHHH--------Hhhcccc-ccCCcEEecC
Confidence 59999998 99999999999887 53 899999964 323322110 0000000 0012233333
Q ss_pred HHhhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 72 VEKHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
..+++++||+||++-..|... | .++ ..+.+.+++..++|.++.+++.++++-| .|....
T Consensus 73 ~~~~~~daDvVVitAG~~~k~-g--~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs-NPvDv~ 135 (323)
T TIGR01759 73 PEEAFKDVDAALLVGAFPRKP-G--MERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG-NPANTN 135 (323)
T ss_pred hHHHhCCCCEEEEeCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC-CcHHHH
Confidence 334599999999998876433 2 111 1123456777778888776466665443 555443
No 174
>PRK04148 hypothetical protein; Provisional
Probab=97.91 E-value=0.0001 Score=60.22 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=65.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|.+||+| -|..+|..|++. |++|+++|++++.++.+++....... +.+ +..+++ ..+++|+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~------------dDl-f~p~~~-~y~~a~l 80 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFV------------DDL-FNPNLE-IYKNAKL 80 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEE------------CcC-CCCCHH-HHhcCCE
Confidence 579999999 998899999998 99999999999999987764322110 111 223333 3789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEE
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVV 124 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv 124 (362)
|.-+=|+| .+...+-.+++.+..+-+|.
T Consensus 81 iysirpp~---------------el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 81 IYSIRPPR---------------DLQPFILELAKKINVPLIIK 108 (134)
T ss_pred EEEeCCCH---------------HHHHHHHHHHHHcCCCEEEE
Confidence 99997743 24566667777776655554
No 175
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=3.8e-05 Score=70.76 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=55.8
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||. |.||.|||..|.++ |++|++|... |.++++.+++||
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~--gatVtv~~s~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDK--NATVTLTHSR---------------------------------TRNLAEVARKAD 203 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 47999999 99999999999999 9999998311 125666789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||.|++.|.. +.. ..++++++||+.|+
T Consensus 204 IVI~avg~~~~--------------v~~------~~ik~GavVIDvgi 231 (284)
T PRK14179 204 ILVVAIGRGHF--------------VTK------EFVKEGAVVIDVGM 231 (284)
T ss_pred EEEEecCcccc--------------CCH------HHccCCcEEEEecc
Confidence 99999987632 122 22789999987553
No 176
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.88 E-value=0.00035 Score=67.88 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=64.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... + +.. .+.+++++.+|+
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~------------------G-~~v-~~leeal~~aDV 253 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD------------------G-FRV-MTMEEAAKIGDI 253 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc------------------C-CEe-CCHHHHHhcCCE
Confidence 4799999999999999999887 89999999998765433321 1 222 234567889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhcCCCCEEEEeeCCc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~-~i~~~l~~~~iVv~~STv~ 130 (362)
||.+++++ .+++ .....++++.++++.+-.+
T Consensus 254 VItaTG~~------------------~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 254 FITATGNK------------------DVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEECCCC
Confidence 99986642 2232 3556788999998866544
No 177
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.85 E-value=7.8e-05 Score=73.30 Aligned_cols=88 Identities=17% Similarity=0.099 Sum_probs=63.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... .... .+++++++.+|+
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~-------------------G~~~-~~leell~~ADI 312 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME-------------------GYQV-VTLEDVVETADI 312 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc-------------------Ccee-ccHHHHHhcCCE
Confidence 4799999999999999999887 89999999998765332211 1222 356777899999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeCC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~STv 129 (362)
|++|+.++. .+ ....+.++++.++++.+-.
T Consensus 313 VI~atGt~~------------------iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 313 FVTATGNKD------------------IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred EEECCCccc------------------ccCHHHHhccCCCcEEEEcCCC
Confidence 999975431 12 2445567899999885443
No 178
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.84 E-value=0.00014 Score=69.10 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=55.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|.+|...+..++...+-.+|.+|++++++.+++.+.. +......+...+++++++.++|+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~aDi 195 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEI------------QSKFNTEIYVVNSADEAIEEADI 195 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH------------HHhcCCcEEEeCCHHHHHhcCCE
Confidence 479999999999988877764322358999999999988776421 00001124556788888999999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
|+.|+|++
T Consensus 196 Vi~aT~s~ 203 (325)
T PRK08618 196 IVTVTNAK 203 (325)
T ss_pred EEEccCCC
Confidence 99997754
No 179
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.84 E-value=5.6e-05 Score=62.30 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=54.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCE--EEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNL--FFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l--~~t~d~~~a~~~ 78 (362)
.++.|||+|.+|..++..|+.. |.+ |++++|+.++.+.+.+.. ....+ ...++..+.+.+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~---------------~~~~~~~~~~~~~~~~~~~ 75 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF---------------GGVNIEAIPLEDLEEALQE 75 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH---------------TGCSEEEEEGGGHCHHHHT
T ss_pred CEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc---------------CccccceeeHHHHHHHHhh
Confidence 4799999999999999999999 765 999999999999887521 00112 233455566889
Q ss_pred CcEEEEeccCC
Q 017997 79 ADIVFVSVNTP 89 (362)
Q Consensus 79 aDvVii~vptp 89 (362)
+|+||-|+|.+
T Consensus 76 ~DivI~aT~~~ 86 (135)
T PF01488_consen 76 ADIVINATPSG 86 (135)
T ss_dssp ESEEEE-SSTT
T ss_pred CCeEEEecCCC
Confidence 99999998765
No 180
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.84 E-value=0.00015 Score=70.79 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=65.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+....... .... .+.+++++.+|+
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~-------------------G~~v-~~l~eal~~aDV 270 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD-------------------GFRV-MTMEEAAELGDI 270 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc-------------------CCEe-cCHHHHHhCCCE
Confidence 4799999999999999999988 89999999998775433221 1222 245677889999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhcCCCCEEEEeeCCc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~-~i~~~l~~~~iVv~~STv~ 130 (362)
||.|++++ .+++ .....++++.++++.+-.+
T Consensus 271 VI~aTG~~------------------~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 271 FVTATGNK------------------DVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCCEEEEcCCCC
Confidence 99997542 2232 4566788999988755443
No 181
>PRK05086 malate dehydrogenase; Provisional
Probab=97.83 E-value=0.00017 Score=68.01 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=67.2
Q ss_pred ceEEEEcC-ChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEE--ecCHHhhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIAL-KCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFF--STDVEKHV 76 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~-~~~G~~V~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~ 76 (362)
|||+|||+ |.+|..++..+.. ...+++++++|+++.. .+. ..+.+.. ....++. .+++.+++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-----~g~alDl~~~~--------~~~~i~~~~~~d~~~~l 67 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-----PGVAVDLSHIP--------TAVKIKGFSGEDPTPAL 67 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-----cceehhhhcCC--------CCceEEEeCCCCHHHHc
Confidence 89999999 9999999988855 2225799999997532 110 0111000 0012332 35655668
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCC-----hHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d-----~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+++|+||+|...+.... .+ +.| .+.+++.++.+.++ .++.+|++ .|.|..+.-
T Consensus 68 ~~~DiVIitaG~~~~~~---~~-R~dll~~N~~i~~~ii~~i~~~-~~~~iviv-vsNP~D~~t 125 (312)
T PRK05086 68 EGADVVLISAGVARKPG---MD-RSDLFNVNAGIVKNLVEKVAKT-CPKACIGI-ITNPVNTTV 125 (312)
T ss_pred CCCCEEEEcCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE-ccCchHHHH
Confidence 99999999998865431 01 111 12344455555555 35555544 567775543
No 182
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.82 E-value=0.00012 Score=70.68 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=68.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+|.|+|+|.+|...+..+... |.+|+++|+++++.+.+.+.. ..+.. ...-..++.+.++++|+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g~~v~~-------------~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFGGRIHT-------------RYSNAYEIEDAVKRADL 233 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcCceeEe-------------ccCCHHHHHHHHccCCE
Confidence 699999999999999999988 889999999999888765421 00000 00001234556789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
||.|++.|... .+-+ +.++....++++.+|++-+.-+.|..
T Consensus 234 VI~a~~~~g~~-------~p~l-----it~~~l~~mk~g~vIvDva~d~GG~~ 274 (370)
T TIGR00518 234 LIGAVLIPGAK-------APKL-----VSNSLVAQMKPGAVIVDVAIDQGGCV 274 (370)
T ss_pred EEEccccCCCC-------CCcC-----cCHHHHhcCCCCCEEEEEecCCCCCc
Confidence 99998543221 1111 11333455688888888775555554
No 183
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.80 E-value=0.00019 Score=67.74 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=65.8
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCH---Hhhh
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV---EKHV 76 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~---~~a~ 76 (362)
|+||+|||+ |.+|..+|..|+..+...++.++|++...-+.+ . +.+.. ..-.+..++|. .+++
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~-----D-----l~~~~---~~~~v~~~td~~~~~~~l 74 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAA-----D-----LSHID---TPAKVTGYADGELWEKAL 74 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCccccc-----c-----hhhcC---cCceEEEecCCCchHHHh
Confidence 579999999 999999999998653246899999932111100 0 00000 00124433331 4569
Q ss_pred cCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+++|+||++...|... + .++ ..+.+.+++.++.+.++ .++.+|+ .+|.|....-
T Consensus 75 ~gaDvVVitaG~~~~~-~--~tR~dll~~N~~i~~~i~~~i~~~-~~~~ivi-v~SNPvdv~~ 132 (321)
T PTZ00325 75 RGADLVLICAGVPRKP-G--MTRDDLFNTNAPIVRDLVAAVASS-APKAIVG-IVSNPVNSTV 132 (321)
T ss_pred CCCCEEEECCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEE-EecCcHHHHH
Confidence 9999999999876542 1 000 01112333444445444 3455554 4666666543
No 184
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.80 E-value=0.00019 Score=69.83 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=64.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|+|+|+|.+|..+|..+... |.+|+++|+++.+.+....- + ... .+.++++..+|+
T Consensus 203 ktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~------------------G-~~~-~~~~e~v~~aDV 260 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME------------------G-YEV-MTMEEAVKEGDI 260 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc------------------C-CEE-ccHHHHHcCCCE
Confidence 3799999999999999998888 88999999999887765431 1 222 234566789999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHH-HHHHhhcCCCCEEEEeeC
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RVIADVSKSDKIVVEKST 128 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~-~~i~~~l~~~~iVv~~ST 128 (362)
||.|++++ .++ ......++++.++++.+.
T Consensus 261 VI~atG~~------------------~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 261 FVTTTGNK------------------DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred EEECCCCH------------------HHHHHHHHhcCCCCcEEEEeCC
Confidence 99997642 123 234567889988877653
No 185
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.78 E-value=0.00033 Score=67.59 Aligned_cols=120 Identities=13% Similarity=0.202 Sum_probs=71.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCC-CC----eEEEE--eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCP-SI----EVAVV--DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~-G~----~V~~~--d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
-||+|||+ |.+|..+|..|+..+- +. .+.++ |+++++++...-. +.+...... .++..+++..
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~D--------L~d~a~~~~-~~v~i~~~~y 115 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAME--------LEDSLYPLL-REVSIGIDPY 115 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence 48999999 9999999999987621 11 34444 8888877654321 111110011 2355444444
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+++++||+||++-..|..+ | .+| ..+.+.+++..+.|.++.+++.+|++-| .|..+.
T Consensus 116 ~~~kdaDIVVitAG~prkp-g--~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs-NPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKPRGP-G--MERADLLDINGQIFADQGKALNAVASKNCKVLVVG-NPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC-CcHHHH
Confidence 4599999999998876433 2 111 1123445666677777766677665544 555443
No 186
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.76 E-value=0.00014 Score=68.34 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=68.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|.+|...+..++...+-.+|.+|++++++.+++.+... + ..-.+. .++.++++.++|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~------------~-~~~~~~-~~~~~~av~~aDi 191 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR------------A-LGPTAE-PLDGEAIPEAVDL 191 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH------------h-cCCeeE-ECCHHHHhhcCCE
Confidence 4799999999999999999763223589999999999888765210 0 001122 4678888999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
|+.|+|++. ++. . ..+++++.|..-++..|+..
T Consensus 192 VitaT~s~~--------------Pl~---~---~~~~~g~hi~~iGs~~p~~~ 224 (304)
T PRK07340 192 VVTATTSRT--------------PVY---P---EAARAGRLVVAVGAFTPDMA 224 (304)
T ss_pred EEEccCCCC--------------cee---C---ccCCCCCEEEecCCCCCCcc
Confidence 999987542 111 1 12578888876555555543
No 187
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.75 E-value=0.00027 Score=66.36 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=58.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|..|...+..++.-.+=.+|.+|+|++++.+++.+.. ++.....+...+++++++.+||+
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~------------~~~~~~~v~~~~~~~eav~~aDI 185 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERF------------SKEFGVDIRPVDNAEAALRDADT 185 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------HHhcCCcEEEeCCHHHHHhcCCE
Confidence 479999999999999998887644568999999999998876421 00001236777899999999999
Q ss_pred EEEeccC
Q 017997 82 VFVSVNT 88 (362)
Q Consensus 82 Vii~vpt 88 (362)
|+.|+++
T Consensus 186 V~taT~s 192 (301)
T PRK06407 186 ITSITNS 192 (301)
T ss_pred EEEecCC
Confidence 9999764
No 188
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.75 E-value=0.0002 Score=70.37 Aligned_cols=70 Identities=26% Similarity=0.318 Sum_probs=53.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||+|.||..++..|... | .+|+++++++++.+.+.+.. ........+..+++.++|
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~--G~~~V~v~~rs~~ra~~la~~~----------------g~~~i~~~~l~~~l~~aD 242 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRK--GVGKILIANRTYERAEDLAKEL----------------GGEAVKFEDLEEYLAEAD 242 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc----------------CCeEeeHHHHHHHHhhCC
Confidence 4799999999999999999988 7 79999999998877665420 011111234556688999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|++.|
T Consensus 243 vVi~aT~s~ 251 (417)
T TIGR01035 243 IVISSTGAP 251 (417)
T ss_pred EEEECCCCC
Confidence 999998765
No 189
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.75 E-value=0.00036 Score=63.44 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=48.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC-CCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh-hcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC-PSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~-~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~ 78 (362)
+||+|||+|+||..++..+.+.. ++++ +.++|+++++.+.+... ....+|+++. ...
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------------------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------------------VALLDGLPGLLAWR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------------------CcccCCHHHHhhcC
Confidence 69999999999999999987631 1354 44578888777766542 2345677774 578
Q ss_pred CcEEEEecc
Q 017997 79 ADIVFVSVN 87 (362)
Q Consensus 79 aDvVii~vp 87 (362)
+|+|+.|-+
T Consensus 63 ~DlVVE~A~ 71 (267)
T PRK13301 63 PDLVVEAAG 71 (267)
T ss_pred CCEEEECCC
Confidence 999999954
No 190
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.74 E-value=0.00024 Score=67.83 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=55.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|+||+|+|+|.||..++..+.+. ++++++++ |++++....+.+. +.+.+.+ ..+.........+....++++.+.+
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-~d~eLvav~d~~~~~~~~la~~~G~~~~~~-~~~~~~~~~~~~i~V~~~~~el~~~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-PDMELVGVAKTKPDYEARVAVEKGYPLYVA-DPEREKAFEEAGIPVAGTIEDLLEK 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-CCcEEEEEECCChHHHHHHHHhcCCCcccc-CccccccccCCceEEcCChhHhhcc
Confidence 68999999999999999888865 57887765 6677666554431 1222211 1110100011246677777777789
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+||.|+|.
T Consensus 79 vDVVIdaT~~ 88 (341)
T PRK04207 79 ADIVVDATPG 88 (341)
T ss_pred CCEEEECCCc
Confidence 9999999763
No 191
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.73 E-value=4.9e-05 Score=61.39 Aligned_cols=95 Identities=24% Similarity=0.321 Sum_probs=54.8
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhhhcCC
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVSEA 79 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~~a 79 (362)
||+|+| .|++|..+...|+++ |.++++. +.++++.-..+....... .+ ...+.+.+ +.++ +.++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~~~~~~~~--~~---------~~~~~~~~~~~~~-~~~~ 67 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPLSEVFPHP--KG---------FEDLSVEDADPEE-LSDV 67 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBHHHTTGGG--TT---------TEEEBEEETSGHH-HTTE
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCeeehhcccc--cc---------ccceeEeecchhH-hhcC
Confidence 799999 999999999999986 5677555 455431222222211000 00 01233433 4444 7999
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
|+||.|+|.. ...+.... .++.+..||+.|.
T Consensus 68 Dvvf~a~~~~---------------~~~~~~~~---~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 68 DVVFLALPHG---------------ASKELAPK---LLKAGIKVIDLSG 98 (121)
T ss_dssp SEEEE-SCHH---------------HHHHHHHH---HHHTTSEEEESSS
T ss_pred CEEEecCchh---------------HHHHHHHH---HhhCCcEEEeCCH
Confidence 9999997731 11233332 3467778887664
No 192
>PLN02494 adenosylhomocysteinase
Probab=97.72 E-value=0.0002 Score=70.37 Aligned_cols=87 Identities=22% Similarity=0.134 Sum_probs=63.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH-HHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIN-AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~-~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|+|.|.+|..+|..+... |.+|+++|+++.+.. ....| +.. .+.+++++.+|
T Consensus 255 KtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~G--------------------~~v-v~leEal~~AD 311 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALMEG--------------------YQV-LTLEDVVSEAD 311 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhcC--------------------Cee-ccHHHHHhhCC
Confidence 4799999999999999999877 899999999987643 33322 222 24567788999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||.|.++.. + +.+.....++++.++++.+-
T Consensus 312 VVI~tTGt~~---------------v--I~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 312 IFVTTTGNKD---------------I--IMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEEECCCCcc---------------c--hHHHHHhcCCCCCEEEEcCC
Confidence 9998765421 0 12445567899999988665
No 193
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.71 E-value=0.00048 Score=67.60 Aligned_cols=120 Identities=12% Similarity=0.195 Sum_probs=73.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHc-------CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALK-------CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~-------~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
-||+|||+ |.+|..+|..|+.. +--.+++++|+++++++...-. +.+...-. ..++..+++..
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD--------L~daa~~~-~~~v~i~~~~y 171 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME--------LEDSLYPL-LREVSIGIDPY 171 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH--------HHHhhhhh-cCceEEecCCH
Confidence 48999999 99999999999875 2124799999999887654321 11111001 12355444434
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
+++++||+||++-..|... |+ ++ ..+.+.+++..+.|.++..++.+|++-| .|..+.
T Consensus 172 e~~kdaDiVVitAG~prkp-G~--tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs-NPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPRGP-GM--ERADLLDINGQIFAEQGKALNEVASRNVKVIVVG-NPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC-CcHHHH
Confidence 4599999999998876533 21 11 1123445666666666445566665544 555443
No 194
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.70 E-value=0.00018 Score=68.20 Aligned_cols=122 Identities=17% Similarity=0.238 Sum_probs=70.8
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcC-----CCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKC-----PSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~-----~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
.||+|+|+ |++|..++..|+..+ .+.+|.++|+++.. +.+ .+. ..++.+.... ..++++.+.++.++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~-~g~----~~Dl~d~~~~-~~~~~~~~~~~~~~ 75 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KAL-EGV----VMELQDCAFP-LLKSVVATTDPEEA 75 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccc-cce----eeehhhcccc-ccCCceecCCHHHH
Confidence 58999999 999999999998751 13589999996531 111 110 0011110000 01244556676567
Q ss_pred hcCCcEEEEeccCCCCCCCCC--CCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 76 VSEADIVFVSVNTPTKTQGLG--AGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~--~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
+++||+||++...|... +.. +-...+.+.+++..+.|.++.+++.++++-| .|..
T Consensus 76 l~~aDiVI~tAG~~~~~-~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD 132 (325)
T cd01336 76 FKDVDVAILVGAMPRKE-GMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPAN 132 (325)
T ss_pred hCCCCEEEEeCCcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHH
Confidence 99999999998765432 110 0001233445666677777766666665544 3443
No 195
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.70 E-value=0.00025 Score=67.21 Aligned_cols=119 Identities=18% Similarity=0.253 Sum_probs=69.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVE 73 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~-----G~~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~ 73 (362)
.||+|+|+ |.+|..+|..|+..+- .+++.++|+++ ++.+.... ++.+..... ......+++..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~--------Dl~d~~~~~-~~~~~i~~~~~ 71 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM--------ELQDCAFPL-LKGVVITTDPE 71 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee--------ehhhhcccc-cCCcEEecChH
Confidence 38999999 9999999999987521 12599999987 43322111 111110000 11223434445
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+++++||+||++-..|... | .++ ..+.+.+++..+.|.++.+++.++++- |.|...
T Consensus 72 ~~~~~aDiVVitAG~~~~~-g--~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFPRKP-G--MERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCCCCc-C--CcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 6699999999998876443 2 111 112344566667777775455555443 355443
No 196
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.69 E-value=0.00017 Score=58.25 Aligned_cols=98 Identities=22% Similarity=0.316 Sum_probs=57.6
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhhhcCC
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSEA 79 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~a 79 (362)
||+|+| .|.+|..++..|... +++++..+ ++++++-+.+......+.. .. ...++ .+.+ ..++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~~l~av~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~--~~~~ 66 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDFEVVALAASARSAGKRVSEAGPHLKG-----EV------VLELEPEDFE--ELAV 66 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCceEEEEEechhhcCcCHHHHCccccc-----cc------ccccccCChh--hcCC
Confidence 689999 599999998888875 37888777 6554333222221100000 00 00111 2222 2589
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
|+||+|+|... ..+.+..+.+.+.++++|++.|+.
T Consensus 67 DvV~~~~~~~~---------------~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 67 DIVFLALPHGV---------------SKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred CEEEEcCCcHH---------------HHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999988431 234444455566889999987763
No 197
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.69 E-value=0.0086 Score=57.24 Aligned_cols=230 Identities=13% Similarity=0.114 Sum_probs=134.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH----HHHcCCCCCCCCChHHHHhhhcCCCEE---EecCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRIN----AWNSDQLPIYEPGLDGVVKQCRGKNLF---FSTDVE 73 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~----~l~~~~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (362)
|.+|-|+|.|.++.-+|..|-+.+ .++|=.+.|...+-+ .++++...+...--.+..+ ...|..+ +..+++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~-~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQ-ALSGECTIDHVFQDYE 78 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhh-hhcCeEEhhHhhcCHH
Confidence 668999999999999999998873 346777887655444 4444221111110011111 1233332 345677
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-cC-CCCEEEEeeCCccccHHHHHHHHHhccCCCceE
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SK-SDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ 151 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-l~-~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (362)
+...+-|.+|+|||+. +-.+++++|... ++ -.++|.+++|+ |+...++..+.+... +..
T Consensus 79 ~i~g~WdtlILavtaD---------------AY~~VL~ql~~~~L~~vk~iVLvSPtf--GS~~lv~~~l~~~~~--~~E 139 (429)
T PF10100_consen 79 EIEGEWDTLILAVTAD---------------AYLDVLQQLPWEVLKRVKSIVLVSPTF--GSHLLVKGFLNDLGP--DAE 139 (429)
T ss_pred HhcccccEEEEEechH---------------HHHHHHHhcCHHHHhhCCEEEEECccc--chHHHHHHHHHhcCC--Cce
Confidence 7778999999998853 235667666542 22 25677776666 333445555655432 222
Q ss_pred Eee-----CCcccccCc---cccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHH--------
Q 017997 152 ILS-----NPEFLAEGT---AIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELS-------- 215 (362)
Q Consensus 152 v~~-----~Pe~~~~g~---a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~-------- 215 (362)
|++ +--+...+. ..-...--.+|.+|+... +...+.+++.+++.++. ......++-.||.-
T Consensus 140 VISFStY~gdTr~~d~~~~~~vlt~~vK~kiYigSt~~--~s~~~~~l~~~~~~~gI-~~~~~~~pl~AE~rNislYVHp 216 (429)
T PF10100_consen 140 VISFSTYYGDTRWSDGEQPNRVLTTAVKKKIYIGSTHS--NSPELDKLCRLLAQLGI-QLEVMDNPLEAESRNISLYVHP 216 (429)
T ss_pred EEEeecccccceeccCCCcceehhhhhhceEEEEeCCC--CChHHHHHHHHHHHcCC-eEEEeCChHhhhhcccceecCC
Confidence 222 111111111 110001112577886643 35678899999999863 23334567777742
Q ss_pred -----HHHHh-----------------------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 017997 216 -----KLAAN-----------------------AFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 216 -----Kl~~N-----------------------~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
++.-| ....-+.....|++.+..++|++.-.+++.++-|
T Consensus 217 plfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~dd 283 (429)
T PF10100_consen 217 PLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDD 283 (429)
T ss_pred hHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccC
Confidence 11111 1234466889999999999999999999999875
No 198
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=97.68 E-value=0.0005 Score=67.38 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=54.4
Q ss_pred ceEEEEcCChhHHH-HHHHHHHc---CCCCeEEEEeCC-HHHHHHHHcCCCCCCCCChHHHHhhhc-CCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGP-TMAVIALK---CPSIEVAVVDIS-VSRINAWNSDQLPIYEPGLDGVVKQCR-GKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~---~~G~~V~~~d~~-~~~~~~l~~~~~~~~e~~l~~~~~~~~-~~~l~~t~d~~~a 75 (362)
|||+|||.|..-++ +...|++. .++-+++++|+| +++++.+..- ...+.++.. .-.+..|+|.++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~--------~~~~~~~~~~~~~v~~t~d~~~a 72 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGAL--------AKRMVKKAGLPIKVHLTTDRREA 72 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHH
Confidence 79999999997553 33444442 235789999999 8887654320 111122111 2347889999999
Q ss_pred hcCCcEEEEeccCC
Q 017997 76 VSEADIVFVSVNTP 89 (362)
Q Consensus 76 ~~~aDvVii~vptp 89 (362)
+++||+||++.-.+
T Consensus 73 l~gadfVi~~~~vg 86 (419)
T cd05296 73 LEGADFVFTQIRVG 86 (419)
T ss_pred hCCCCEEEEEEeeC
Confidence 99999999997644
No 199
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.67 E-value=0.00054 Score=64.70 Aligned_cols=100 Identities=9% Similarity=0.070 Sum_probs=71.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|..+...+..+....+-.+|.+|++++++.+++.+.. ++ ..-.+..+++.++++++||+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~------------~~-~~~~v~~~~~~~~av~~ADI 195 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYA------------QA-LGFAVNTTLDAAEVAHAANL 195 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hh-cCCcEEEECCHHHHhcCCCE
Confidence 479999999999999998887655679999999999998776421 00 01235667889999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+.|+++.. | +.. .+.+++++.|..-++..|+.
T Consensus 196 V~taT~s~~----------P----~~~-----~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 196 IVTTTPSRE----------P----LLQ-----AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred EEEecCCCC----------c----eeC-----HHHcCCCcEEEecCCCCccc
Confidence 999976431 1 111 13567898886555544443
No 200
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00037 Score=65.77 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=84.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
..++|||+|..+......+..-.+.-+|.+|+++++..+++.+.- ++.....+..+++.++++++||+
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l------------~~~~~~~v~a~~s~~~av~~aDi 198 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARL------------RKRGGEAVGAADSAEEAVEGADI 198 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHH------------HhhcCccceeccCHHHHhhcCCE
Confidence 358999999999999999988766679999999999998876420 00011135778899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
|+.|+|+.. |-++ .+.+++++.|...++-.|+..+.-.+.+... +-.++..++..
T Consensus 199 Ivt~T~s~~----------Pil~---------~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra----~~vvvD~~~q~ 253 (330)
T COG2423 199 VVTATPSTE----------PVLK---------AEWLKPGTHINAIGADAPGKRELDPEVLARA----DRVVVDSLEQT 253 (330)
T ss_pred EEEecCCCC----------Ceec---------HhhcCCCcEEEecCCCCcccccCCHHHHHhc----CeEEEcCHHHh
Confidence 999977532 2211 2457899988766665666544323334332 12455666544
No 201
>PRK06046 alanine dehydrogenase; Validated
Probab=97.66 E-value=0.00035 Score=66.40 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=67.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|.+|...+..|+...+-..|.+||+++++.+++.+... +...-.+...++.+++++ +|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~------------~~~~~~v~~~~~~~~~l~-aDi 196 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMS------------SVVGCDVTVAEDIEEACD-CDI 196 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHH------------hhcCceEEEeCCHHHHhh-CCE
Confidence 4799999999999999999854223578999999999887764210 000112556778888776 999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|++|+|+.. | +.. .+.+++++.|..-++..|+.
T Consensus 197 Vv~aTps~~----------P----~~~-----~~~l~~g~hV~~iGs~~p~~ 229 (326)
T PRK06046 197 LVTTTPSRK----------P----VVK-----AEWIKEGTHINAIGADAPGK 229 (326)
T ss_pred EEEecCCCC----------c----Eec-----HHHcCCCCEEEecCCCCCcc
Confidence 999987531 1 111 13467888886545544543
No 202
>PRK11579 putative oxidoreductase; Provisional
Probab=97.66 E-value=0.00095 Score=63.98 Aligned_cols=67 Identities=19% Similarity=0.389 Sum_probs=47.1
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
+||+|||+|.+|.. .+..+... ++.+++ ++|+++++... . .+...+.+|+++.++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-~~~~l~av~d~~~~~~~~---~-----------------~~~~~~~~~~~ell~~~ 63 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-PGLELAAVSSSDATKVKA---D-----------------WPTVTVVSEPQHLFNDP 63 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-CCCEEEEEECCCHHHHHh---h-----------------CCCCceeCCHHHHhcCC
Confidence 59999999999974 55556553 477776 57998876531 1 012345678888775
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
+.|+|++|+|+.
T Consensus 64 ~vD~V~I~tp~~ 75 (346)
T PRK11579 64 NIDLIVIPTPND 75 (346)
T ss_pred CCCEEEEcCCcH
Confidence 689999998764
No 203
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.66 E-value=0.00041 Score=67.40 Aligned_cols=45 Identities=29% Similarity=0.354 Sum_probs=39.9
Q ss_pred ceEEEEcCChhHH-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCC
Q 017997 2 VKICCIGAGYVGG-PTMAVIALKCPSIEVAVVDISVSRINAWNSDQLP 48 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~ 48 (362)
|||.++|+|.+|. .++..|.+. |++|+++|++++++++|++.+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~~qglY 46 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALNKRKSY 46 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHhcCCCe
Confidence 8999999999997 558888888 99999999999999999987543
No 204
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.64 E-value=8.2e-05 Score=72.20 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=64.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE------EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA------VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~------~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
++|+|||+|.+|...|..|... |++|+ ++|.+.+.-+.+.+. .+.. .+.+++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS--GvnVvvglr~~~id~~~~s~~kA~~d-------------------GF~v-~~~~Ea 94 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATEN-------------------GFKV-GTYEEL 94 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc--cceeEEeccccccccccchHHHHHhc-------------------CCcc-CCHHHH
Confidence 5899999999999999888888 89888 444444333333221 1222 457888
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
++.||+|++.+|... -..+.+++.++++++.++...-.
T Consensus 95 ~~~ADvVviLlPDt~---------------q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 95 IPQADLVINLTPDKQ---------------HSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred HHhCCEEEEcCChHH---------------HHHHHHHHHhhCCCCCEEEecCC
Confidence 999999999987421 13445899999999998866443
No 205
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.64 E-value=0.00033 Score=66.72 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=56.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|+|||+|.+|...+..++...+..+|.+|+|++++.+++.+.... . ..-.+...+|+++++.++|+
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-----------~-~g~~v~~~~d~~~al~~aDi 200 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-----------E-LGIPVTVARDVHEAVAGADI 200 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-----------c-cCceEEEeCCHHHHHccCCE
Confidence 57999999999999888887532246899999999999987652100 0 01124556788888999999
Q ss_pred EEEeccCC
Q 017997 82 VFVSVNTP 89 (362)
Q Consensus 82 Vii~vptp 89 (362)
|+.|+|++
T Consensus 201 Vi~aT~s~ 208 (330)
T PRK08291 201 IVTTTPSE 208 (330)
T ss_pred EEEeeCCC
Confidence 99997753
No 206
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.64 E-value=0.00047 Score=64.90 Aligned_cols=115 Identities=20% Similarity=0.294 Sum_probs=68.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ec--CHHhhhcC
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-ST--DVEKHVSE 78 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~--d~~~a~~~ 78 (362)
||+|||+ |.+|.++|..|+..+...++.++|+++ .+ |.. .++.+.. ..-+++. +. ++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~----g~a----~DL~~~~---~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AA----GVA----ADLSHIP---TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--Cc----EEE----chhhcCC---cCceEEEecCCCchHHHcCC
Confidence 7999999 999999999998873234899999986 11 110 0011100 0123443 22 23456999
Q ss_pred CcEEEEeccCCCCCCCCCC--CCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 79 ADIVFVSVNTPTKTQGLGA--GKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~--~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
||+||++...|..+ ++.. --..+.+.+++..+.|.++. ++.++++ -|.|..+
T Consensus 68 aDivvitaG~~~~~-g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiiv-vsNPvDv 121 (312)
T TIGR01772 68 ADVVVIPAGVPRKP-GMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILV-ITNPVNS 121 (312)
T ss_pred CCEEEEeCCCCCCC-CccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEE-ecCchhh
Confidence 99999999876543 2110 00223345666677777774 5555544 3456654
No 207
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.64 E-value=0.00036 Score=65.60 Aligned_cols=66 Identities=17% Similarity=0.410 Sum_probs=47.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
+||+|||+|.||..++..+.+. ++.++++ +|+++ +++. +. . ....+.|..+.+.++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-pd~ELVgV~dr~~~~~~~---~~-~-----------------~v~~~~d~~e~l~~i 61 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-PDMELVGVFSRRGAETLD---TE-T-----------------PVYAVADDEKHLDDV 61 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-CCcEEEEEEcCCcHHHHh---hc-C-----------------CccccCCHHHhccCC
Confidence 6999999999999999888765 5888886 59885 4332 11 0 122234555667889
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+|++|+|+.
T Consensus 62 DVViIctPs~ 71 (324)
T TIGR01921 62 DVLILCMGSA 71 (324)
T ss_pred CEEEEcCCCc
Confidence 9999998754
No 208
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.64 E-value=0.00052 Score=73.80 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=54.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCe-------------EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEE
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIE-------------VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF 67 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~-------------V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~ 67 (362)
|.||+|||+|.||.+.|..|++. ++.+ |++.|++++..+++.++...+ ..+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--------------~~v~ 633 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--------------EAVQ 633 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--------------ceEE
Confidence 35899999999999999999976 3444 999999999988877642110 0122
Q ss_pred E-ecCHHhh---hcCCcEEEEeccCCC
Q 017997 68 F-STDVEKH---VSEADIVFVSVNTPT 90 (362)
Q Consensus 68 ~-t~d~~~a---~~~aDvVii~vptp~ 90 (362)
. .+|.++. ++++|+|++|+|+..
T Consensus 634 lDv~D~e~L~~~v~~~DaVIsalP~~~ 660 (1042)
T PLN02819 634 LDVSDSESLLKYVSQVDVVISLLPASC 660 (1042)
T ss_pred eecCCHHHHHHhhcCCCEEEECCCchh
Confidence 2 3454443 368999999998754
No 209
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=97.63 E-value=0.0014 Score=61.70 Aligned_cols=107 Identities=12% Similarity=0.125 Sum_probs=69.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVD-ISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d-~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|+|+|.+|..+|.+|-.- | .++.|. |++..-+...+- . .. ..|.++.+.++|
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F--g-~~i~y~~r~~~~~~~~~~~------------------~-~~-~~d~~~~~~~sD 219 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF--G-CVILYHSRTQLPPEEAYEY------------------Y-AE-FVDIEELLANSD 219 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc--c-ceeeeecccCCchhhHHHh------------------c-cc-ccCHHHHHhhCC
Confidence 4799999999999999999985 7 655554 433322222110 0 01 235667789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|++|.|.. +++..+ +=+.+...++++.++|+.+--.....+.+.+.+++.
T Consensus 220 ~ivv~~pLt-----------~~T~~l--iNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 220 VIVVNCPLT-----------KETRHL--INKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred EEEEecCCC-----------HHHHHH--hhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 999997742 222222 225777889999999985543444445666777664
No 210
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.62 E-value=0.00014 Score=62.69 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=63.8
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEE
Q 017997 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (362)
Q Consensus 4 I~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (362)
|.|+|+ |++|..++..|.+. ||+|+++-|++++.+. ..+ ..+.. +.+.-.++..++++++|.|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~--~~~V~~~~R~~~~~~~-~~~-~~~~~------------~d~~d~~~~~~al~~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR--GHEVTALVRSPSKAED-SPG-VEIIQ------------GDLFDPDSVKAALKGADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TSEEEEEESSGGGHHH-CTT-EEEEE------------SCTTCHHHHHHHHTTSSEE
T ss_pred eEEECCCChHHHHHHHHHHHC--CCEEEEEecCchhccc-ccc-cccce------------eeehhhhhhhhhhhhcchh
Confidence 789996 99999999999999 8999999999998887 211 11100 0010012345678899999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 83 FVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 83 ii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
|.+++.+.. |....+.+++.+.+. +...+|+.+|.
T Consensus 65 i~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~ 99 (183)
T PF13460_consen 65 IHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSA 99 (183)
T ss_dssp EECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEET
T ss_pred hhhhhhhcc----------ccccccccccccccc-ccccceeeecc
Confidence 999975432 344455555555443 34455555444
No 211
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.61 E-value=0.00043 Score=59.00 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=52.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||+|||+ |.+|..++.-..+. ||+|+++-||++++... ++...+ + ..+.--+...+.+.+-|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAivRn~~K~~~~-~~~~i~-q------------~Difd~~~~a~~l~g~D 64 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIVRNASKLAAR-QGVTIL-Q------------KDIFDLTSLASDLAGHD 64 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEEeChHhcccc-ccceee-c------------ccccChhhhHhhhcCCc
Confidence 89999995 99999999999999 99999999999998664 221111 1 11111122345688999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||-+...+
T Consensus 65 aVIsA~~~~ 73 (211)
T COG2910 65 AVISAFGAG 73 (211)
T ss_pred eEEEeccCC
Confidence 999998754
No 212
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.60 E-value=0.00025 Score=62.47 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=30.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~ 35 (362)
.+|+|+|+|.+|+.+|..|++. |. +++++|.|
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA--GIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 4799999999999999999999 88 79999998
No 213
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.60 E-value=0.00054 Score=67.54 Aligned_cols=71 Identities=25% Similarity=0.391 Sum_probs=53.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|+|||+|.||..++..|... |. +|+++++++++.+.+.+.. ........+..+++.++|
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~--G~~~V~v~~r~~~ra~~la~~~----------------g~~~~~~~~~~~~l~~aD 244 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEK--GVRKITVANRTLERAEELAEEF----------------GGEAIPLDELPEALAEAD 244 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHc----------------CCcEeeHHHHHHHhccCC
Confidence 4899999999999999999987 76 8999999999887665421 011111234556678999
Q ss_pred EEEEeccCCC
Q 017997 81 IVFVSVNTPT 90 (362)
Q Consensus 81 vVii~vptp~ 90 (362)
+||.|++.|.
T Consensus 245 vVI~aT~s~~ 254 (423)
T PRK00045 245 IVISSTGAPH 254 (423)
T ss_pred EEEECCCCCC
Confidence 9999987653
No 214
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.57 E-value=0.0004 Score=66.25 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=70.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|..+...+..+..-.+-.+|.+|++++++.+++.+... +. .-.+..+++.++++++||+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~---~~----------~~~v~~~~~~~~av~~ADI 196 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLA---GP----------GLRIVACRSVAEAVEGADI 196 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHH---hc----------CCcEEEeCCHHHHHhcCCE
Confidence 3699999999999888877765445689999999999987764210 00 1236677899999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+.|++++.. .| +.. .+.+++|+.|..-.+..|+.
T Consensus 197 IvtaT~S~~~--------~P----vl~-----~~~lkpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 197 ITTVTADKTN--------AT----ILT-----DDMVEPGMHINAVGGDCPGK 231 (346)
T ss_pred EEEecCCCCC--------Cc----eec-----HHHcCCCcEEEecCCCCCCc
Confidence 9999864310 01 111 14568888876544444544
No 215
>PLN00106 malate dehydrogenase
Probab=97.57 E-value=0.00043 Score=65.50 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=67.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH--HHHcCCCCCCCCChHHHHhhhcCCCEEE---ecCHHhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRIN--AWNSDQLPIYEPGLDGVVKQCRGKNLFF---STDVEKH 75 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~--~l~~~~~~~~e~~l~~~~~~~~~~~l~~---t~d~~~a 75 (362)
.||+|||+ |.+|..+|..|+..+...++.++|+++..-+ .|..... .-.+.. ++|+.++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~---------------~~~i~~~~~~~d~~~~ 83 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT---------------PAQVRGFLGDDQLGDA 83 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCc---------------CceEEEEeCCCCHHHH
Confidence 48999999 9999999999997632358999999861100 1111000 012322 3345667
Q ss_pred hcCCcEEEEeccCCCCCCCCC--CCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 76 VSEADIVFVSVNTPTKTQGLG--AGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~--~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
++++|+||++...|..+ ++. +--..+...+++..+.+.++. ++.+|+. +|.|..
T Consensus 84 l~~aDiVVitAG~~~~~-g~~R~dll~~N~~i~~~i~~~i~~~~-p~aiviv-vSNPvD 139 (323)
T PLN00106 84 LKGADLVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEAVAKHC-PNALVNI-ISNPVN 139 (323)
T ss_pred cCCCCEEEEeCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE-eCCCcc
Confidence 99999999998876542 110 000122334455556666664 5555544 566665
No 216
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.56 E-value=0.00024 Score=70.53 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=53.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCCCCCChHHHHhhhcCCCEEEecCHHhh-hcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~-~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~a 79 (362)
|+|.|+|+|.+|..+|..|.+. |++|+++|+++++++.+.+ ...+... +...-...+.++ +.++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~--g~~v~vid~~~~~~~~~~~~~~~~~~~------------gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE--NNDVTVIDTDEERLRRLQDRLDVRTVV------------GNGSSPDVLREAGAEDA 66 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcCEEEEE------------eCCCCHHHHHHcCCCcC
Confidence 7999999999999999999998 9999999999999998865 2111110 111111122333 6789
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|.++++++.
T Consensus 67 ~~vi~~~~~ 75 (453)
T PRK09496 67 DLLIAVTDS 75 (453)
T ss_pred CEEEEecCC
Confidence 999999764
No 217
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.55 E-value=0.00042 Score=65.46 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=62.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+++|||+|..+...+..++...|-.+|.+|+|++++.+++.+.. ++ ..-.+..++|.++++++||+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~------------~~-~~~~v~~~~~~~~av~~aDi 195 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARL------------RD-LGVPVVAVDSAEEAVRGADI 195 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHH------------HC-CCTCEEEESSHHHHHTTSSE
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhh------------cc-ccccceeccchhhhcccCCE
Confidence 379999999999999999987665668999999999998876521 11 12347788999999999999
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
|+.|+|+.... |=+ . ...+++++.|..-+...|+.
T Consensus 196 i~taT~s~~~~--------P~~---~------~~~l~~g~hi~~iGs~~~~~ 230 (313)
T PF02423_consen 196 IVTATPSTTPA--------PVF---D------AEWLKPGTHINAIGSYTPGM 230 (313)
T ss_dssp EEE----SSEE--------ESB----------GGGS-TT-EEEE-S-SSTTB
T ss_pred EEEccCCCCCC--------ccc---c------HHHcCCCcEEEEecCCCCch
Confidence 99997753200 111 0 24577888886555444443
No 218
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.55 E-value=0.00085 Score=63.87 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=50.8
Q ss_pred CceEEEEcCChhH-HHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 1 MVKICCIGAGYVG-GPTMAVIALKCPS--IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G-~~lA~~la~~~~G--~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
++||+|||+|.++ ...+..+.+.. + .-|.++|+++++.+.+.+.. +.-.+.+|+++.++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~-~~~~~vav~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~ 64 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALG-GGLELVAVVDRDPERAEAFAEEF-----------------GIAKAYTDLEELLA 64 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCC-CceEEEEEecCCHHHHHHHHHHc-----------------CCCcccCCHHHHhc
Confidence 4799999999555 55777777761 2 24666799999988776521 11146678888776
Q ss_pred C--CcEEEEeccCCC
Q 017997 78 E--ADIVFVSVNTPT 90 (362)
Q Consensus 78 ~--aDvVii~vptp~ 90 (362)
+ .|+|+||+|+..
T Consensus 65 ~~~iD~V~Iatp~~~ 79 (342)
T COG0673 65 DPDIDAVYIATPNAL 79 (342)
T ss_pred CCCCCEEEEcCCChh
Confidence 4 699999988643
No 219
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.52 E-value=0.00042 Score=66.35 Aligned_cols=98 Identities=22% Similarity=0.347 Sum_probs=55.0
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
||||+|+|+ |++|..++..|++. |+++++.+-.+.+.-+.+.+....+. +. ....+.+-.+....++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-p~~elv~v~~~~~~g~~l~~~~~~~~--~~---------~~~~~~~~~~~~~~~v 69 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-PEVEIVAVTSRSSAGKPLSDVHPHLR--GL---------VDLVLEPLDPEILAGA 69 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-CCceEEEEECccccCcchHHhCcccc--cc---------cCceeecCCHHHhcCC
Confidence 579999997 99999999999875 57887665433332222221100000 00 0111211111135789
Q ss_pred cEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
|+||+|+|+.. -.+....+ +..+..||+.|.
T Consensus 70 D~Vf~alP~~~---------------~~~~v~~a---~~aG~~VID~S~ 100 (343)
T PRK00436 70 DVVFLALPHGV---------------SMDLAPQL---LEAGVKVIDLSA 100 (343)
T ss_pred CEEEECCCcHH---------------HHHHHHHH---HhCCCEEEECCc
Confidence 99999987532 12333333 345788888776
No 220
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.48 E-value=0.00053 Score=59.18 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=50.0
Q ss_pred eEEEEcCChhHHHHHHH-HHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh-hcCCCEEEecCHHhhhc
Q 017997 3 KICCIGAGYVGGPTMAV-IALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ-CRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~-la~~---~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~-~~~~~l~~t~d~~~a~~ 77 (362)
||+|||.|..-.+.-.. +... .++-++.++|+|+++++....- .+.+.++ ...-++..|+|.++|++
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~--------~~~~~~~~~~~~~v~~ttd~~eAl~ 72 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERL--------ARRMVEEAGADLKVEATTDRREALE 72 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHH--------HHHHHHHCTTSSEEEEESSHHHHHT
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHhC
Confidence 89999999988774322 2222 1345899999999999865430 1112222 11234788999999999
Q ss_pred CCcEEEEecc
Q 017997 78 EADIVFVSVN 87 (362)
Q Consensus 78 ~aDvVii~vp 87 (362)
+||+||.++-
T Consensus 73 gADfVi~~ir 82 (183)
T PF02056_consen 73 GADFVINQIR 82 (183)
T ss_dssp TESEEEE---
T ss_pred CCCEEEEEee
Confidence 9999999975
No 221
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.44 E-value=0.00067 Score=64.34 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=67.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCP-----SIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~-----G~~V~~~d~~~~~--~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
||+|||+ |.+|..+|..|+..+- .+++.++|+++.. .+.... ++.+..... ...+..+++..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~--------Dl~d~~~~~-~~~~~~~~~~~~ 71 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM--------ELMDCAFPL-LDGVVPTHDPAV 71 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe--------ehhcccchh-cCceeccCChHH
Confidence 6999999 9999999999987511 2269999996542 221111 111100000 112344445345
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccH
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKTA 134 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~ 134 (362)
++++||+||++-..|... + .++ ..+.+.+++..+.|.++.+++.++++-| .|....
T Consensus 72 ~~~~aDiVVitAG~~~~~-~--~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs-NPvDv~ 131 (324)
T TIGR01758 72 AFTDVDVAILVGAFPRKE-G--MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG-NPANTN 131 (324)
T ss_pred HhCCCCEEEEcCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC-CcHHHH
Confidence 699999999998876542 1 011 1122445666677777754556665533 555443
No 222
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=97.43 E-value=0.001 Score=59.99 Aligned_cols=109 Identities=18% Similarity=0.290 Sum_probs=69.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINA----WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~----l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
.||.|+|.|.+|.+.|..+..++.-.++.++|.++++++. |+- ..++ ....++..+.|+.. -+
T Consensus 21 ~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH-~s~f-----------~~~~~V~~~~Dy~~-sa 87 (332)
T KOG1495|consen 21 NKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQH-GSAF-----------LSTPNVVASKDYSV-SA 87 (332)
T ss_pred ceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhcc-cccc-----------ccCCceEecCcccc-cC
Confidence 4899999999999999988877334589999999987652 221 1222 12346777778875 78
Q ss_pred CCcEEEEeccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
+++++|++...-..+ | +++ .-+.+.++.++..+.++ .|++++++-|
T Consensus 88 ~S~lvIiTAGarq~~-g--esRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvS 137 (332)
T KOG1495|consen 88 NSKLVIITAGARQSE-G--ESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVS 137 (332)
T ss_pred CCcEEEEecCCCCCC-C--cHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEec
Confidence 999999998754332 1 111 11223344555555555 4566655444
No 223
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.43 E-value=0.00068 Score=64.97 Aligned_cols=97 Identities=25% Similarity=0.392 Sum_probs=56.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhhhcC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (362)
|||+|+|+ |++|..+...|.++ |+++++ +++.+...-+.+.+-. +.+.. ...+.+. .+.++...+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~~l~~s~~sagk~~~~~~-----~~l~~------~~~~~~~~~~~~~~~~~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEVEITYLVSSRESAGKPVSEVH-----PHLRG------LVDLNLEPIDEEEIAED 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCceEEEEeccchhcCCChHHhC-----ccccc------cCCceeecCCHHHhhcC
Confidence 69999998 99999999999876 678888 4465542222122100 00000 0012222 244554468
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+|++|+|+|+.. -.+....+ ...+..||+.|+
T Consensus 69 ~DvVf~alP~~~---------------s~~~~~~~---~~~G~~VIDlS~ 100 (346)
T TIGR01850 69 ADVVFLALPHGV---------------SAELAPEL---LAAGVKVIDLSA 100 (346)
T ss_pred CCEEEECCCchH---------------HHHHHHHH---HhCCCEEEeCCh
Confidence 999999988532 12333333 245778888765
No 224
>PLN00203 glutamyl-tRNA reductase
Probab=97.43 E-value=0.00092 Score=67.20 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=54.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||+|.||..++..|... |. +|+++++++++.+.+.+... +.. -.....++..+++.++|
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~--G~~~V~V~nRs~era~~La~~~~-----g~~--------i~~~~~~dl~~al~~aD 331 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSK--GCTKMVVVNRSEERVAALREEFP-----DVE--------IIYKPLDEMLACAAEAD 331 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhC-----CCc--------eEeecHhhHHHHHhcCC
Confidence 4799999999999999999988 75 79999999999988875210 000 00112245566789999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|++.+
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999998754
No 225
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.41 E-value=0.001 Score=63.27 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=55.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+++|||+|.+|...+..|+... + .+|++|+|++++.+++.+... ++ ..-.+...++.++++.++|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~-~i~~v~V~~R~~~~a~~~a~~~~-----------~~-~g~~v~~~~~~~~av~~aD 196 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR-DIRSARIWARDSAKAEALALQLS-----------SL-LGIDVTAATDPRAAMSGAD 196 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-CccEEEEECCCHHHHHHHHHHHH-----------hh-cCceEEEeCCHHHHhccCC
Confidence 47999999999999999997532 4 579999999999988764210 00 0112455678888899999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+|+.|+|++
T Consensus 197 iVvtaT~s~ 205 (326)
T TIGR02992 197 IIVTTTPSE 205 (326)
T ss_pred EEEEecCCC
Confidence 999997653
No 226
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.39 E-value=0.0043 Score=64.86 Aligned_cols=131 Identities=12% Similarity=0.105 Sum_probs=83.7
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCC----c
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNP----E 157 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P----e 157 (362)
||+|+|. +.+.+.++++.++++++++|++-+++.....+.+.+.+... ..-+|..|| |
T Consensus 1 vila~Pv---------------~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~---~~~fvg~HPMaG~e 62 (673)
T PRK11861 1 VLLAAPV---------------AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGAR---IGQFVPGHPIAGRE 62 (673)
T ss_pred CEEEcCH---------------HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhcccc---CCeEEecCCcCcCc
Confidence 6899773 35688899999999999999875555433333333333221 112567777 6
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhH-HHHHHHHHhHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWS-AELSKLAANAFLAQRISSVNAM 233 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-ae~~Kl~~N~~~~~~ia~~nE~ 233 (362)
..++.++..++++...+++- +.+..++++++.++++++.++ ..+..++++. -+++-+++-.-..+-.++++.+
T Consensus 63 ~~G~~~a~~~Lf~~~~~il~-p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 63 SSGVDAALADLYVGRNVVLC-ALPENAPDALARVEAMWRAAR--ADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQI 136 (673)
T ss_pred chhhhhhChhHhCCCeEEEe-cCCCCCHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666778888887777665 334445788999999999986 4677777754 3444444444444444444433
No 227
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.37 E-value=0.0014 Score=65.34 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=68.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-C--------H
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-D--------V 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d--------~ 72 (362)
.|+.|+|+|.+|...+..+... |..|+++|+++++.+.+++-....-+....+--. ...+..+..+ + .
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~-~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGG-SGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEecccccccc-ccccceeecCHHHHHHHHHHH
Confidence 3899999999999888888777 8889999999999888775322211111110000 0011111111 1 2
Q ss_pred HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccc
Q 017997 73 EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVK 132 (362)
Q Consensus 73 ~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~g 132 (362)
.+.++++|+||.|+--|-.. .| +-+.++..+.++++.+|++-|.-+.|
T Consensus 242 ~e~~~~~DIVI~TalipG~~-------aP-----~Lit~emv~~MKpGsvIVDlA~d~GG 289 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKP-------AP-----KLITEEMVDSMKAGSVIVDLAAEQGG 289 (511)
T ss_pred HHHhCCCCEEEECcccCCCC-------CC-----eeehHHHHhhCCCCCEEEEeeeCCCC
Confidence 23367899999998222110 11 11344556778899998886654444
No 228
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.36 E-value=0.0013 Score=61.60 Aligned_cols=113 Identities=21% Similarity=0.288 Sum_probs=66.4
Q ss_pred EEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhhhcCCcEEEE
Q 017997 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHVSEADIVFV 84 (362)
Q Consensus 6 VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~~~aDvVii 84 (362)
|||+|.+|.++|..|+..+-.-++.++|+++++++..... +..... ....+.+.+ .+++ ++++||+||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~-~~~~~~~i~~~~~~-~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD--------LQHAAS-FLPTPKKIRSGDYS-DCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH--------HHHhhc-ccCCCeEEecCCHH-HHCCCCEEEE
Confidence 6999999999999998873233799999988765543321 110000 011122333 4555 5999999999
Q ss_pred eccCCCCCCCCCCCC----CCChHHHHHHHHHHHhhcCCCCEEEEeeCCcccc
Q 017997 85 SVNTPTKTQGLGAGK----AADLTYWESAARVIADVSKSDKIVVEKSTVPVKT 133 (362)
Q Consensus 85 ~vptp~~~~g~~~~~----~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt 133 (362)
+...|..+ |+ ++ ..+...+++..+.|.++. ++.+|++-| .|..+
T Consensus 71 tag~~rk~-g~--~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs-NP~d~ 118 (299)
T TIGR01771 71 TAGAPQKP-GE--TRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT-NPVDI 118 (299)
T ss_pred CCCCCCCC-CC--CHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC-CHHHH
Confidence 98876543 21 11 112244566666777764 555554433 45443
No 229
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.35 E-value=0.00072 Score=65.46 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=59.0
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEE-Ee-cCHHhhhc
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLF-FS-TDVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~-~t-~d~~~a~~ 77 (362)
+|||+|+|+ |++|..+...|..+ |+++|+.+..+...-+.+......+. .+.+. +. .+..+ ++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~h-P~~el~~l~s~~saG~~i~~~~~~l~------------~~~~~~~~~~~~~~-~~ 103 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANH-PDFEITVMTADRKAGQSFGSVFPHLI------------TQDLPNLVAVKDAD-FS 103 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhC-CCCeEEEEEChhhcCCCchhhCcccc------------CccccceecCCHHH-hc
Confidence 369999996 99999999999887 68899999876543322222111110 01111 11 12222 68
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
++|+||+|+|.. +...+.+.+..+..||+.|+
T Consensus 104 ~~DvVf~Alp~~-------------------~s~~i~~~~~~g~~VIDlSs 135 (381)
T PLN02968 104 DVDAVFCCLPHG-------------------TTQEIIKALPKDLKIVDLSA 135 (381)
T ss_pred CCCEEEEcCCHH-------------------HHHHHHHHHhCCCEEEEcCc
Confidence 999999998741 23334444446777888776
No 230
>PRK10206 putative oxidoreductase; Provisional
Probab=97.32 E-value=0.0024 Score=61.19 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=45.5
Q ss_pred CceEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 1 MVKICCIGAGYVGGP-TMAVIALKCPSIEVA-VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~-lA~~la~~~~G~~V~-~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
|+||+|||+|.++.. .+..+....++.+|+ ++|+++++. ...+. -+...+.+|+++.++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~-----------------~~~~~~~~~~~ell~~ 62 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPI-----------------YSHIHFTSDLDEVLND 62 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHh-----------------cCCCcccCCHHHHhcC
Confidence 579999999997752 334343322357775 579987654 22221 012345678888775
Q ss_pred -CCcEEEEeccCC
Q 017997 78 -EADIVFVSVNTP 89 (362)
Q Consensus 78 -~aDvVii~vptp 89 (362)
+.|+|+||+|+.
T Consensus 63 ~~iD~V~I~tp~~ 75 (344)
T PRK10206 63 PDVKLVVVCTHAD 75 (344)
T ss_pred CCCCEEEEeCCch
Confidence 679999998754
No 231
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.29 E-value=0.0015 Score=60.62 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=53.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|+|+|.+|.+++..|+.. | .+|++++|+.++.+.+.+..... ..+.+..+..+.+.++|
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~--g~~~V~v~~R~~~~a~~l~~~~~~~--------------~~~~~~~~~~~~~~~~D 187 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDL--GVAEITIVNRTVERAEELAKLFGAL--------------GKAELDLELQEELADFD 187 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhhhc--------------cceeecccchhccccCC
Confidence 3789999999999999999988 7 79999999999988876521100 00122112334578899
Q ss_pred EEEEeccCCC
Q 017997 81 IVFVSVNTPT 90 (362)
Q Consensus 81 vVii~vptp~ 90 (362)
+||-|+|.+.
T Consensus 188 ivInaTp~g~ 197 (278)
T PRK00258 188 LIINATSAGM 197 (278)
T ss_pred EEEECCcCCC
Confidence 9999987654
No 232
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.29 E-value=0.0017 Score=65.00 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=50.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
+++.|+|+|.+|.+++..|++. |++|+++++++++.+.+.+... .......+..+ +.++|+
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~--G~~V~i~~R~~~~~~~la~~~~----------------~~~~~~~~~~~-l~~~Di 393 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARA--GAELLIFNRTKAHAEALASRCQ----------------GKAFPLESLPE-LHRIDI 393 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc----------------cceechhHhcc-cCCCCE
Confidence 5799999999999999999998 8999999999998887754210 00000112222 578999
Q ss_pred EEEeccC
Q 017997 82 VFVSVNT 88 (362)
Q Consensus 82 Vii~vpt 88 (362)
||.|+|.
T Consensus 394 VInatP~ 400 (477)
T PRK09310 394 IINCLPP 400 (477)
T ss_pred EEEcCCC
Confidence 9999874
No 233
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.27 E-value=0.00072 Score=66.19 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=55.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||+|-||..++..|+.. | .++++++|+.++.+.+.+... .......++..+.+.++|
T Consensus 182 kkvlviGaG~~a~~va~~L~~~--g~~~I~V~nRt~~ra~~La~~~~---------------~~~~~~~~~l~~~l~~aD 244 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTAL--APKQIMLANRTIEKAQKITSAFR---------------NASAHYLSELPQLIKKAD 244 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHhc---------------CCeEecHHHHHHHhccCC
Confidence 4799999999999999999998 6 589999999999888875310 011222245556689999
Q ss_pred EEEEeccCCC
Q 017997 81 IVFVSVNTPT 90 (362)
Q Consensus 81 vVii~vptp~ 90 (362)
+||.|++.|.
T Consensus 245 iVI~aT~a~~ 254 (414)
T PRK13940 245 IIIAAVNVLE 254 (414)
T ss_pred EEEECcCCCC
Confidence 9999988763
No 234
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=97.25 E-value=0.00027 Score=66.28 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHcCCCC-CCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEec
Q 017997 12 VGGPTMAVIALKCPSIEVAVVDISVSRINA----WNSDQLP-IYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSV 86 (362)
Q Consensus 12 ~G~~lA~~la~~~~G~~V~~~d~~~~~~~~----l~~~~~~-~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~v 86 (362)
||..+|.++..+ |++|++.|.|..-++. +..+..+ ..-..++..-..-...++.-+.|+.. ++++|+++.+|
T Consensus 1 MG~gia~~~~~~--~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~-~~~~dmvieav 77 (380)
T KOG1683|consen 1 MGAGIAIVFILA--GIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTG-FANADMVIEAV 77 (380)
T ss_pred CcchHHHHHHHc--CCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccccc-ccccceeccch
Confidence 788999999999 9999999999766552 1111000 00000000000001234566777776 99999996664
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEE-EEeeCCccccH
Q 017997 87 NTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIV-VEKSTVPVKTA 134 (362)
Q Consensus 87 ptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iV-v~~STv~~gt~ 134 (362)
..|++-..+++.+|.+.++++++. .++|+.+++..
T Consensus 78 -------------~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~i 113 (380)
T KOG1683|consen 78 -------------FEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVI 113 (380)
T ss_pred -------------hhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHH
Confidence 345667789999999999999977 88888887653
No 235
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.25 E-value=0.0014 Score=61.10 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=53.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|+|+|.+|.+++..|+.. |. +|+++||+.++.+.+.+.... ......+....+..+.+.++|
T Consensus 128 k~vlIlGaGGaaraia~aL~~~--G~~~I~I~nR~~~ka~~la~~l~~-----------~~~~~~~~~~~~~~~~~~~aD 194 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL--GVERLTIFDVDPARAAALADELNA-----------RFPAARATAGSDLAAALAAAD 194 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHHh-----------hCCCeEEEeccchHhhhCCCC
Confidence 3799999999999999999998 76 799999999999887642100 000001222234444578899
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||-|+|..
T Consensus 195 iVInaTp~G 203 (284)
T PRK12549 195 GLVHATPTG 203 (284)
T ss_pred EEEECCcCC
Confidence 999997653
No 236
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.22 E-value=0.003 Score=60.23 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=52.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.||+|||+ .||...+..+.+..+++++++ +|+++++.+++.+.. ++...+|+++.+.+.|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------------------gi~~y~~~eell~d~D 64 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------------------GVPLYCEVEELPDDID 64 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------------------CCCccCCHHHHhcCCC
Confidence 58999999 679988888887521566655 699999988876521 1234578888888899
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
++++++||.
T Consensus 65 i~~V~ipt~ 73 (343)
T TIGR01761 65 IACVVVRSA 73 (343)
T ss_pred EEEEEeCCC
Confidence 999999763
No 237
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.22 E-value=0.0028 Score=50.38 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=49.4
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|.|+|.|.+|..++..|.+. +.+|+++|.|+++++.+.+...++. ++.-.+.+++ .-+++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~-------------a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLER-------------AGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHH-------------TTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhcccccccccchhhhHHhh-------------cCccccCE
Confidence 57999999999999999997 7899999999999999886543221 1111111111 12678999
Q ss_pred EEEecc
Q 017997 82 VFVSVN 87 (362)
Q Consensus 82 Vii~vp 87 (362)
++++++
T Consensus 66 vv~~~~ 71 (116)
T PF02254_consen 66 VVILTD 71 (116)
T ss_dssp EEEESS
T ss_pred EEEccC
Confidence 999965
No 238
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.21 E-value=0.0015 Score=67.25 Aligned_cols=72 Identities=13% Similarity=0.287 Sum_probs=53.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|.|+|.|.+|..++..|.+. |++|+++|.|+++++.+++...+.. +..-.+.+++ .-+++|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~-------------agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRA-------------AGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHh-------------cCCccC
Confidence 4789999999999999999998 9999999999999999876433321 1221111111 126789
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|.+++++++
T Consensus 466 ~~vv~~~~d 474 (601)
T PRK03659 466 EAIVITCNE 474 (601)
T ss_pred CEEEEEeCC
Confidence 999999774
No 239
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.20 E-value=0.0028 Score=58.75 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=45.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHH--HHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc-
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRIN--AWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~--~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~- 77 (362)
+||+|||+|.||.-++..+.+. ++.++.. +|++++... ..++- +.-...++.++.++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~~~elvaV~d~d~es~~la~A~~~------------------Gi~~~~~~~e~ll~~ 62 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-EHLEMVAMVGIDPESDGLARAREL------------------GVKTSAEGVDGLLAN 62 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-CCcEEEEEEeCCcccHHHHHHHHC------------------CCCEEECCHHHHhcC
Confidence 6899999999999887777753 3677665 688876532 22211 11123445666553
Q ss_pred -CCcEEEEeccCC
Q 017997 78 -EADIVFVSVNTP 89 (362)
Q Consensus 78 -~aDvVii~vptp 89 (362)
+.|+|++|+|++
T Consensus 63 ~dIDaV~iaTp~~ 75 (285)
T TIGR03215 63 PDIDIVFDATSAK 75 (285)
T ss_pred CCCCEEEECCCcH
Confidence 689999998754
No 240
>PLN03075 nicotianamine synthase; Provisional
Probab=97.19 E-value=0.0035 Score=58.27 Aligned_cols=133 Identities=16% Similarity=0.232 Sum_probs=81.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHh---hhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEK---HVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~---a~~ 77 (362)
.+|..||+|..|.+....++...|+-+++++|+|++.++..++.-.. .+++. .+++|. .|..+ ...
T Consensus 125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~--------~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLS--------KRMFFHTADVMDVTESLK 194 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCcc--------CCcEEEECchhhcccccC
Confidence 47999999999986655555555667899999999998876642100 12221 234432 22222 146
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc-cCCCceEEeeCC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN-SKGIKFQILSNP 156 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~-~~g~~~~v~~~P 156 (362)
+.|+||+.+=-..+. ..-..+++.+.+.+++|.+++..| .-|...-+.+.+... ..|.+.....+|
T Consensus 195 ~FDlVF~~ALi~~dk-----------~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~~LYp~v~~~~~~gf~~~~~~~P 261 (296)
T PLN03075 195 EYDVVFLAALVGMDK-----------EEKVKVIEHLGKHMAPGALLMLRS--AHGARAFLYPVVDPCDLRGFEVLSVFHP 261 (296)
T ss_pred CcCEEEEeccccccc-----------ccHHHHHHHHHHhcCCCcEEEEec--ccchHhhcCCCCChhhCCCeEEEEEECC
Confidence 899999985222111 122678999999999999998877 244444445443222 124444555677
Q ss_pred c
Q 017997 157 E 157 (362)
Q Consensus 157 e 157 (362)
+
T Consensus 262 ~ 262 (296)
T PLN03075 262 T 262 (296)
T ss_pred C
Confidence 4
No 241
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.19 E-value=0.0019 Score=59.31 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=64.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.||+|||.|.-|.+-|.+|.++ |.+|++=-+.... .++..+ ..+.+ -+++++++.+|
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS--GlnViiGlr~g~~s~~kA~~-------------------dGf~V-~~v~ea~k~AD 76 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS--GLNVIIGLRKGSSSWKKAKE-------------------DGFKV-YTVEEAAKRAD 76 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc--CCcEEEEecCCchhHHHHHh-------------------cCCEe-ecHHHHhhcCC
Confidence 4899999999999999999999 8987754442222 232222 22443 45778899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhcCCCCEEEEeeCC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~-~i~~~l~~~~iVv~~STv 129 (362)
+|++-+|.-. -.++.+ .|.+.|+++..+.....+
T Consensus 77 vim~L~PDe~---------------q~~vy~~~I~p~Lk~G~aL~FaHGf 111 (338)
T COG0059 77 VVMILLPDEQ---------------QKEVYEKEIAPNLKEGAALGFAHGF 111 (338)
T ss_pred EEEEeCchhh---------------HHHHHHHHhhhhhcCCceEEecccc
Confidence 9999987422 144555 899999999988665543
No 242
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.17 E-value=0.0033 Score=60.91 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=55.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||+|-||.-.|.+|+.+ | .+|++.+|+.++.+.|.+.. .+....-++..+.+.++|
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~--g~~~i~IaNRT~erA~~La~~~----------------~~~~~~l~el~~~l~~~D 240 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEK--GVKKITIANRTLERAEELAKKL----------------GAEAVALEELLEALAEAD 240 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHh----------------CCeeecHHHHHHhhhhCC
Confidence 3799999999999999999999 6 78999999999999887631 112223345566789999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|+..|
T Consensus 241 vVissTsa~ 249 (414)
T COG0373 241 VVISSTSAP 249 (414)
T ss_pred EEEEecCCC
Confidence 999997765
No 243
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=97.14 E-value=0.0026 Score=59.64 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=53.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH------HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSR------INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~------~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
|+|+|-|+ |++|+.+...|.++ ||.|.+.-|+++. +.++...... +. .....+....++.+
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l~~a~~~-----l~-----l~~aDL~d~~sf~~ 74 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKLEGAKER-----LK-----LFKADLLDEGSFDK 74 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhcccCccc-----ce-----EEeccccccchHHH
Confidence 68999985 99999999999999 9999999998876 3333311100 00 01123444556788
Q ss_pred hhcCCcEEEEeccCCCCC
Q 017997 75 HVSEADIVFVSVNTPTKT 92 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~ 92 (362)
++++||.||=+- +|...
T Consensus 75 ai~gcdgVfH~A-sp~~~ 91 (327)
T KOG1502|consen 75 AIDGCDGVFHTA-SPVDF 91 (327)
T ss_pred HHhCCCEEEEeC-ccCCC
Confidence 999999987654 45443
No 244
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.0018 Score=60.83 Aligned_cols=98 Identities=26% Similarity=0.442 Sum_probs=57.2
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhh-hc
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKH-VS 77 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a-~~ 77 (362)
|+||+|+| .||-|.-+.+.|+.+ |..++..+..++.+=+.+.+-. |.+.... .+.++. |.++. ..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~~~~g~~~~~~~-----p~l~g~~------~l~~~~~~~~~~~~~ 69 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVELILISSRERAGKPVSDVH-----PNLRGLV------DLPFQTIDPEKIELD 69 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeechhhcCCchHHhC-----ccccccc------ccccccCChhhhhcc
Confidence 68999999 599999999999987 5778777776543222222211 1111100 122322 23332 45
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||+||+|+|.... .+... ..+..+..||+.|+
T Consensus 70 ~~DvvFlalPhg~s---------------~~~v~---~l~~~g~~VIDLSa 102 (349)
T COG0002 70 ECDVVFLALPHGVS---------------AELVP---ELLEAGCKVIDLSA 102 (349)
T ss_pred cCCEEEEecCchhH---------------HHHHH---HHHhCCCeEEECCc
Confidence 69999999874211 22222 23345666888887
No 245
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.11 E-value=0.0061 Score=61.07 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCE-EEecCH------
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNL-FFSTDV------ 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l-~~t~d~------ 72 (362)
.||.|+|+|.+|+..+..+... |.+|+++|+++++.+..++-+..+. +..-++.. ..+.. ..+.+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~---~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGS---GDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEecccccccc---ccchhhhcchhHHHHHHH
Confidence 3899999999999777776666 8899999999999998876332211 11000000 00000 011121
Q ss_pred --HhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 73 --EKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 73 --~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
.+.++++|+||.|+..|... .| ....++..+.++++.+|++-+.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~-------aP-----~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKP-------AP-----KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCccc-------Cc-----chHHHHHHHhcCCCCEEEEEcc
Confidence 12235799999998765421 11 1123556667788888876553
No 246
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=97.10 E-value=0.0025 Score=62.77 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=53.3
Q ss_pred ceEEEEcCChhHH-HHHHHHHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGG-PTMAVIALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~-~lA~~la~~---~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (362)
|||+|||.|..=+ .+...|++. .++-+|+++|+|+++++.+.+- ...+.++. ..-++..|+|.++|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l--------~~~~~~~~g~~~~v~~Ttdr~eAl 72 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA--------VKILFKENYPEIKFVYTTDPEEAF 72 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEECCHHHHh
Confidence 8999999998511 233344433 2467999999999998764430 11112211 123578899999999
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
++||+||.++-.
T Consensus 73 ~gADfVi~~irv 84 (437)
T cd05298 73 TDADFVFAQIRV 84 (437)
T ss_pred CCCCEEEEEeee
Confidence 999999998753
No 247
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.09 E-value=0.026 Score=50.32 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=28.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~ 36 (362)
++|+|.|+|.+|..+|..|.+. |. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~--G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEE--GGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEcCCC
Confidence 5899999999999999999998 77 455678887
No 248
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.09 E-value=0.0028 Score=61.40 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=57.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCC--CEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCP-SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGK--NLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~-G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~--~l~~t~d~~~a~~~ 78 (362)
.+++|||+|..+......++...| -.+|.+|+|++++.+++.+.. +....+ .+..+++.++++++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~------------~~~~~~~~~v~~~~s~~eav~~ 223 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWV------------AETYPQITNVEVVDSIEEVVRG 223 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH------------HHhcCCCceEEEeCCHHHHHcC
Confidence 479999999999999999887533 358999999999998776421 000011 26778899999999
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
||+|+.|+++
T Consensus 224 ADIVvtaT~s 233 (379)
T PRK06199 224 SDIVTYCNSG 233 (379)
T ss_pred CCEEEEccCC
Confidence 9999999764
No 249
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0037 Score=57.69 Aligned_cols=103 Identities=20% Similarity=0.345 Sum_probs=72.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-e---cCHHhhhcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-S---TDVEKHVSE 78 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t---~d~~~a~~~ 78 (362)
||.|||.|.+|+--|....-- |-+|+..|+|.+++..+.. + ..+++.. . .++++++..
T Consensus 170 kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd------------~----f~~rv~~~~st~~~iee~v~~ 231 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDD------------L----FGGRVHTLYSTPSNIEEAVKK 231 (371)
T ss_pred cEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhH------------h----hCceeEEEEcCHHHHHHHhhh
Confidence 799999999999777666555 8999999999998877643 1 1233321 1 246677899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+|++|=+|-.|-.. .| +-+.+++.+.++++.+||+-.-=..|+.+
T Consensus 232 aDlvIgaVLIpgak-------aP-----kLvt~e~vk~MkpGsVivDVAiDqGGc~E 276 (371)
T COG0686 232 ADLVIGAVLIPGAK-------AP-----KLVTREMVKQMKPGSVIVDVAIDQGGCFE 276 (371)
T ss_pred ccEEEEEEEecCCC-------Cc-----eehhHHHHHhcCCCcEEEEEEEcCCCcee
Confidence 99999988766433 33 23567888889999999875433344433
No 250
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.07 E-value=0.0048 Score=57.55 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=44.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHH--HHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDISVSRI--NAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~~~~~--~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-- 76 (362)
+||+|||+|.+|..++..+.+. ++.++. ++|+|++.- +..++-+.+.+ .++.++.+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-~~velvAVvdid~es~gla~A~~~Gi~~~------------------~~~ie~LL~~ 65 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-EHLEPGAMVGIDPESDGLARARRLGVATS------------------AEGIDGLLAM 65 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-CCcEEEEEEeCChhhHHHHHHHHcCCCcc------------------cCCHHHHHhC
Confidence 4899999999999988888764 467765 568887642 22232222222 23344433
Q ss_pred ---cCCcEEEEeccC
Q 017997 77 ---SEADIVFVSVNT 88 (362)
Q Consensus 77 ---~~aDvVii~vpt 88 (362)
.+.|+||+++|.
T Consensus 66 ~~~~dIDiVf~AT~a 80 (302)
T PRK08300 66 PEFDDIDIVFDATSA 80 (302)
T ss_pred cCCCCCCEEEECCCH
Confidence 468999999764
No 251
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.07 E-value=0.0017 Score=55.55 Aligned_cols=53 Identities=28% Similarity=0.531 Sum_probs=43.5
Q ss_pred ceEEEEcCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||.|.| |.++|..|.+. |.+|++.+++.+ +..+.+.++|
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~~~---------------------------------~l~~~l~~aD 89 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSKTK---------------------------------NLKEHTKQAD 89 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECCch---------------------------------hHHHHHhhCC
Confidence 47999999986 99899999998 889999997621 2234588999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|++.|
T Consensus 90 iVIsat~~~ 98 (168)
T cd01080 90 IVIVAVGKP 98 (168)
T ss_pred EEEEcCCCC
Confidence 999998865
No 252
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.06 E-value=0.0011 Score=62.57 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=51.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|||.|.| .|++|..++..|.++ ||+|++++|++++...+......+. .+.+.-.++..++++++|
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~R~~~~~~~l~~~~v~~v------------~~Dl~d~~~l~~al~g~d 66 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE--GYQVRCLVRNLRKASFLKEWGAELV------------YGDLSLPETLPPSFKGVT 66 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEEcChHHhhhHhhcCCEEE------------ECCCCCHHHHHHHHCCCC
Confidence 7999999 599999999999999 9999999999876554432111110 111221233456788999
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
+||-+++.
T Consensus 67 ~Vi~~~~~ 74 (317)
T CHL00194 67 AIIDASTS 74 (317)
T ss_pred EEEECCCC
Confidence 99988653
No 253
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.04 E-value=0.0037 Score=54.70 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=51.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe--cC---HHhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TD---VEKH 75 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d---~~~a 75 (362)
+++.|+|. |.+|..++..|++. |++|++++|+.++.+.+.+.... .. ...+... .+ ..++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~~R~~~~~~~l~~~l~~--~~----------~~~~~~~~~~~~~~~~~~ 94 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLVGRDLERAQKAADSLRA--RF----------GEGVGAVETSDDAARAAA 94 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHh--hc----------CCcEEEeeCCCHHHHHHH
Confidence 58999995 99999999999998 89999999999988776542100 00 0112211 22 2356
Q ss_pred hcCCcEEEEeccCC
Q 017997 76 VSEADIVFVSVNTP 89 (362)
Q Consensus 76 ~~~aDvVii~vptp 89 (362)
++++|+||.++|.+
T Consensus 95 ~~~~diVi~at~~g 108 (194)
T cd01078 95 IKGADVVFAAGAAG 108 (194)
T ss_pred HhcCCEEEECCCCC
Confidence 78999999997643
No 254
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.03 E-value=0.0033 Score=61.83 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=53.2
Q ss_pred ceEEEEcCChh-HHHHHHHHHHc---CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYV-GGPTMAVIALK---CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~la~~---~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (362)
|||+|||.|.. .-.+...|++. .++-+|+++|+|+++++.+.+- ...+.++. ..-++..|+|.++|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l--------~~~~~~~~g~~~~v~~ttD~~~Al 72 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTI--------AKRYVEEVGADIKFEKTMDLEDAI 72 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHHh
Confidence 79999999985 21233444432 2467999999999988764320 01111211 123478899999999
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
++||+||.++-.
T Consensus 73 ~gADfVi~~irv 84 (425)
T cd05197 73 IDADFVINQFRV 84 (425)
T ss_pred CCCCEEEEeeec
Confidence 999999998753
No 255
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.03 E-value=0.0005 Score=66.91 Aligned_cols=119 Identities=15% Similarity=0.184 Sum_probs=67.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE----ecC---HHhh
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF----STD---VEKH 75 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~----t~d---~~~a 75 (362)
|.|+|+|.+|..++..|++.. .+ +|++.|++.++++++.+... ..++.+ .+| +.+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~---------------~~~~~~~~~d~~~~~~l~~~ 64 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLL---------------GDRVEAVQVDVNDPESLAEL 64 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--T---------------TTTEEEEE--TTTHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhcc---------------ccceeEEEEecCCHHHHHHH
Confidence 789999999999999999883 35 89999999999998875310 011111 122 4456
Q ss_pred hcCCcEEEEeccCCCCCCCCC-----CCCCCChHHHHHHHHHHHhhc-CCCCEEEEeeCCccccHHHHH
Q 017997 76 VSEADIVFVSVNTPTKTQGLG-----AGKAADLTYWESAARVIADVS-KSDKIVVEKSTVPVKTAEAIE 138 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~-----~~~~~d~~~l~~~~~~i~~~l-~~~~iVv~~STv~~gt~~~l~ 138 (362)
++++|+||-|+|......-+. ...-.|.+++......+.+.. +.+..++....+.||.+.-+.
T Consensus 65 ~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a 133 (386)
T PF03435_consen 65 LRGCDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLA 133 (386)
T ss_dssp HTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHH
T ss_pred HhcCCEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHH
Confidence 789999999997432110000 001223332222233332222 356777777778899877553
No 256
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.02 E-value=0.018 Score=50.86 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=45.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecC-H-HhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV-SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTD-V-EKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~-~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d-~-~~a~~~ 78 (362)
++|.|||.|.||...+..|.+. |++|++++++. +.+..+... +.+.+... + ...+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~~------------------~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVEE------------------GKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHhC------------------CCEEEEecCCChhhcCC
Confidence 4899999999999999999998 89999997653 222333221 12222111 1 123789
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+||.|++.
T Consensus 71 adlViaaT~d 80 (202)
T PRK06718 71 AFLVIAATND 80 (202)
T ss_pred ceEEEEcCCC
Confidence 9999999654
No 257
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.02 E-value=0.0034 Score=64.23 Aligned_cols=70 Identities=14% Similarity=0.272 Sum_probs=51.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCC-C-CCChHHHHhhhcCCCEEEecCHHh-hhcCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPI-Y-EPGLDGVVKQCRGKNLFFSTDVEK-HVSEA 79 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~-~-e~~l~~~~~~~~~~~l~~t~d~~~-a~~~a 79 (362)
+|-|+|+|.+|..+|..|.++ |++|+++|.|+++++.+++...+. + ++.-++. +++ -++++
T Consensus 419 hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~--------------L~~a~i~~a 482 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRERGIRAVLGNAANEEI--------------MQLAHLDCA 482 (558)
T ss_pred CEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHH--------------HHhcCcccc
Confidence 588999999999999999999 999999999999999987633222 1 1111111 111 25789
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|.++++++.
T Consensus 483 ~~viv~~~~ 491 (558)
T PRK10669 483 RWLLLTIPN 491 (558)
T ss_pred CEEEEEcCC
Confidence 999999764
No 258
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.99 E-value=0.003 Score=58.39 Aligned_cols=70 Identities=21% Similarity=0.373 Sum_probs=54.0
Q ss_pred ceEEEEcCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYV-GGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~-G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||.|.+ |.|+|..|.+. |.+|+++... |.|+.+.+++||
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~--~atVt~~hs~---------------------------------t~~l~~~~~~AD 203 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQA--GATVTICHSK---------------------------------TRDLAAHTRQAD 203 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEecCC---------------------------------CCCHHHHhhhCC
Confidence 47999999887 99999999998 8999986531 234556689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.++|+|-- +.. ..++++++||+-
T Consensus 204 IVV~avG~~~~--------------i~~------~~ik~gavVIDV 229 (285)
T PRK14189 204 IVVAAVGKRNV--------------LTA------DMVKPGATVIDV 229 (285)
T ss_pred EEEEcCCCcCc--------------cCH------HHcCCCCEEEEc
Confidence 99999997631 111 567899998863
No 259
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=96.99 E-value=0.019 Score=53.52 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=66.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC-HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS-VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~-~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+++|+|+|.+|+-+|.++-.- |..|++||.- +.... .+ -++.+. +.++++..||
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~--gm~vI~~dpi~~~~~~--~a-------------------~gvq~v-sl~Eil~~AD 202 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAM--GMHVIGYDPITPMALA--EA-------------------FGVQLV-SLEEILPKAD 202 (406)
T ss_pred cEEEEeecccchHHHHHHHHhc--CceEEeecCCCchHHH--Hh-------------------ccceee-eHHHHHhhcC
Confidence 3689999999999999998877 8899999863 22111 11 123443 3567899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHh
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~ 143 (362)
+|-+=+| . .|+++.+.+ +.-...+++|.-||+.|--..=.+..+.+.++.
T Consensus 203 FitlH~P--L---------tP~T~~lin--~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 203 FITLHVP--L---------TPSTEKLLN--DETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred EEEEccC--C---------CcchhhccC--HHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8877655 3 233343322 233445789999998764222223455555554
No 260
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.90 E-value=0.02 Score=56.84 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=31.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|+|.|.+|.++|..|++. |++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4899999999999999999999 99999999975
No 261
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.90 E-value=0.002 Score=55.52 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=33.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
||.|||+|.+|+.++..|++. |. +++++|.|.-....++++
T Consensus 1 ~VlViG~GglGs~ia~~La~~--Gvg~i~lvD~D~v~~sNl~Rq 42 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS--GVGNLKLVDFDVVEPSNLNRQ 42 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEEcCcchhcc
Confidence 689999999999999999999 76 599999986333444433
No 262
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.89 E-value=0.012 Score=54.16 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=61.7
Q ss_pred ceEEEEcCChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHh---hh
Q 017997 2 VKICCIGAGYVGGPTMAVIAL-KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEK---HV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~-~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~---a~ 76 (362)
.||++||.|.+-++. ..|++ .+++..|.++|+|++.++..++=.. ...++ ..++++ +.|..+ .+
T Consensus 122 ~rVaFIGSGPLPlT~-i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~--~~~~L--------~~~m~f~~~d~~~~~~dl 190 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTS-IVLAKQHGPGARVHNIDIDPEANELARRLVA--SDLGL--------SKRMSFITADVLDVTYDL 190 (276)
T ss_dssp -EEEEE---SS-HHH-HHHH--HTT--EEEEEESSHHHHHHHHHHHH-----HH---------SSEEEEES-GGGG-GG-
T ss_pred ceEEEEcCCCcchHH-HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHh--hcccc--------cCCeEEEecchhcccccc
Confidence 389999999999854 45553 3345679999999998875433000 00111 234444 334322 25
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhcc-CCCceEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGIKFQILSN 155 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~-~g~~~~v~~~ 155 (362)
.++|+|+++---.. |-+.-.++++.+.+++++|+.|+.+|.-.. -.-+.+.+.... .|.+.....+
T Consensus 191 ~~~DvV~lAalVg~-----------~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl--R~~LYp~vd~~~l~gf~~~~~~h 257 (276)
T PF03059_consen 191 KEYDVVFLAALVGM-----------DAEPKEEILEHLAKHMAPGARLVVRSAHGL--RSFLYPVVDPEDLRGFEVLAVVH 257 (276)
T ss_dssp ---SEEEE-TT-S---------------SHHHHHHHHHHHS-TTSEEEEEE--GG--GGGSS----TGGGTTEEEEEEE-
T ss_pred ccCCEEEEhhhccc-----------ccchHHHHHHHHHhhCCCCcEEEEecchhh--HHHcCCCCChHHCCCeEEEEEEC
Confidence 78999999954321 112347899999999999999999875322 222344433221 2433344556
Q ss_pred Cc
Q 017997 156 PE 157 (362)
Q Consensus 156 Pe 157 (362)
|+
T Consensus 258 P~ 259 (276)
T PF03059_consen 258 PT 259 (276)
T ss_dssp --
T ss_pred CC
Confidence 64
No 263
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.88 E-value=0.0046 Score=63.90 Aligned_cols=72 Identities=10% Similarity=0.245 Sum_probs=53.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCC--CCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIY--EPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~--e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
.+|-|+|.|.+|..+|..|.++ |++++++|.|+++++.+++...+.+ +..-.+.++ +.-++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~-------------~agi~~A 465 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLE-------------SAGAAKA 465 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHH-------------hcCCCcC
Confidence 3689999999999999999998 9999999999999999886433321 111111111 0125689
Q ss_pred cEEEEeccC
Q 017997 80 DIVFVSVNT 88 (362)
Q Consensus 80 DvVii~vpt 88 (362)
|.+++++++
T Consensus 466 ~~vvv~~~d 474 (621)
T PRK03562 466 EVLINAIDD 474 (621)
T ss_pred CEEEEEeCC
Confidence 999999764
No 264
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.86 E-value=0.003 Score=54.00 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=65.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHh------h-hcCCCEEEecCHHh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK------Q-CRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~------~-~~~~~l~~t~d~~~ 74 (362)
.||.|+|.|.+|..-+..+... |++|+.+|.++++.+.+........+....+... + ...........+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 98 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE 98 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence 5899999999999988888888 9999999999998887765322111100000000 0 00000011123455
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
.++.+|+||.+.--+-.. .| .-+.++..+.++++.+|++-|.
T Consensus 99 ~i~~~d~vI~~~~~~~~~-------~P-----~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 99 FIAPADIVIGNGLYWGKR-------AP-----RLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHH-SEEEEHHHBTTSS---------------SBEHHHHHTSSTTEEEEETTG
T ss_pred HHhhCcEEeeecccCCCC-------CC-----EEEEhHHhhccCCCceEEEEEe
Confidence 678999999876543221 22 2233555666889999988553
No 265
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.85 E-value=0.0051 Score=56.95 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=44.2
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||.|. +|.++|..|... |.+|+.+++.. .++.+.+++||
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~--gatVtv~~s~t---------------------------------~~l~~~~~~AD 203 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQK--NASVTILHSRS---------------------------------KDMASYLKDAD 203 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCCc---------------------------------hhHHHHHhhCC
Confidence 4799999988 999999999988 89999998631 13445588999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.+++.|
T Consensus 204 IVIsAvg~p 212 (286)
T PRK14175 204 VIVSAVGKP 212 (286)
T ss_pred EEEECCCCC
Confidence 999999876
No 266
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.0049 Score=59.92 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=54.3
Q ss_pred ceEEEEcCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhh-cCCCEEEecCHHhhh
Q 017997 2 VKICCIGAGYVGGPTMA--VIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~--~la~--~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~-~~~~l~~t~d~~~a~ 76 (362)
+||+|||.|..+.+--. .+.+ ..|+.++.++|+++++.+.+..- .+.++++. ..-++..|+|.++|+
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~--------~~~~v~~~g~~~kv~~ttd~~eAl 75 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAIL--------AKKLVEEAGAPVKVEATTDRREAL 75 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEecCHHHHh
Confidence 58999999999986432 1221 23577999999999998843320 12223321 123478899999999
Q ss_pred cCCcEEEEecc
Q 017997 77 SEADIVFVSVN 87 (362)
Q Consensus 77 ~~aDvVii~vp 87 (362)
++||+|+.++-
T Consensus 76 ~gAdfVi~~~r 86 (442)
T COG1486 76 EGADFVITQIR 86 (442)
T ss_pred cCCCEEEEEEe
Confidence 99999999975
No 267
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.83 E-value=0.037 Score=50.21 Aligned_cols=200 Identities=16% Similarity=0.160 Sum_probs=108.1
Q ss_pred CEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 65 NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 65 ~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+++.++|-.+|++++|++++-+| ... . -...++.+.++++.+.+|.++.|+|+-.. ...++..
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftP--fG~--------~----t~~Iikki~~~ipEgAII~~tCTIpt~~l---y~~le~l 190 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLP--KGG--------M----QPDIIEKFADDIKEGAIVTHACTIPTTKF---AKIFKDL 190 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecC--CCC--------C----chHHHHHHHhhCCCCCEEeccccCCHHHH---HHHHHHh
Confidence 35677777788999999999965 322 1 14578899999999999999999987543 3344443
Q ss_pred cCCCceEE-eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-Ch--hHHHHHHHH--
Q 017997 145 SKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NL--WSAELSKLA-- 218 (362)
Q Consensus 145 ~~g~~~~v-~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~--~~ae~~Kl~-- 218 (362)
.+ .++.+ .|+|- ..||.. -++.++. .-.+++..+++.+|-++.. +..+... +. ..+.|.-++
T Consensus 191 ~R-~DvgIsS~HPa-aVPgt~-------Gq~~i~e--gyAtEEqI~klveL~~sa~-k~ay~~PA~lvspV~DMgS~VTA 258 (342)
T PRK00961 191 GR-DDLNVTSYHPG-AVPEMK-------GQVYIAE--GYADEEAVEKLYEIGKKAR-GNAFKMPANLIGPVCDMCSAVTA 258 (342)
T ss_pred Cc-ccCCeeccCCC-CCCCCC-------Cceeccc--ccCCHHHHHHHHHHHHHhC-CCeeecchhhcchhhhHHHHHHH
Confidence 22 23333 36774 334443 1233441 2335888999999988876 3444332 21 112222211
Q ss_pred --HhH---HHHHHHHHHHHHHHHHHHhC-CCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchh
Q 017997 219 --ANA---FLAQRISSVNAMSALCEATG-ANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292 (362)
Q Consensus 219 --~N~---~~~~~ia~~nE~~~l~~~~g-~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~ 292 (362)
--+ |++.-...++-=..+.+.+- ...+++..++... |+.|--=--||.+|+..|++..+-+.
T Consensus 259 v~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~tmasLme~~------------GI~gm~~aLnPeaL~~tAdSM~~~~~ 326 (342)
T PRK00961 259 IVYAGILAYRDAVTQILGAPADFAQMMADEALTQITALMREE------------GIDNMEEALDPGALLGTADSMCFGPL 326 (342)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh------------hHhHHHHhcCHHHHhhhhhhcccchH
Confidence 111 12111122221122222211 1223333333322 33332223377788888888766555
Q ss_pred HHHHHHHHHHHHH
Q 017997 293 AEYWKQVIKINDY 305 (362)
Q Consensus 293 ~~~~~~~~~~N~~ 305 (362)
.+.+.+++++=+.
T Consensus 327 q~~L~~aL~vLek 339 (342)
T PRK00961 327 ADILPTALKVLEK 339 (342)
T ss_pred HHHHHHHHHHHHh
Confidence 6677777766544
No 268
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.83 E-value=0.028 Score=50.59 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=101.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHH-HHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC--PSIEVAVVDISVSRINA-WNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~--~G~~V~~~d~~~~~~~~-l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
|+|++||.|+|-..++..+...+ +..+++.+-.+...... ++. .+--.+.++ .+.++.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~------------------~g~~~~~~n-~~~~~~ 61 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEA------------------LGVKTVFTN-LEVLQA 61 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhc------------------CCceeeech-HHHHhh
Confidence 79999999999999998887762 11234444332111111 221 121233344 667899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceE-EeeCCc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ-ILSNPE 157 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~-v~~~Pe 157 (362)
+|++++||. |. .+.+++.++...+..+++|+. -.-.-+...+...+.... .-+. ..-.|+
T Consensus 62 s~v~~~svK-p~--------------~i~~vls~~~~~~~~~~iivS--~aaG~tl~~l~~~l~~~~--rviRvmpNtp~ 122 (267)
T KOG3124|consen 62 SDVVFLSVK-PQ--------------VIESVLSEIKPKVSKGKIIVS--VAAGKTLSSLESKLSPPT--RVIRVMPNTPS 122 (267)
T ss_pred ccceeEeec-ch--------------hHHHHhhcCccccccceEEEE--EeecccHHHHHHhcCCCC--ceEEecCCChh
Confidence 999999997 32 246677777766667777762 222223344544443111 0111 123556
Q ss_pred ccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017997 158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALC 237 (362)
Q Consensus 158 ~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~ 237 (362)
.+++|.. ++..+. ....+..+.++++++..+ ....+...----.+.+.... -+....++.-++.-.
T Consensus 123 ~v~eg~s---------v~~~g~--~~~~~D~~l~~~ll~~vG--~~~evpE~~iDavTgLsGSg-PAy~f~~ieaLadGg 188 (267)
T KOG3124|consen 123 VVGEGAS---------VYAIGC--HATNEDLELVEELLSAVG--LCEEVPEKCIDAVTGLSGSG-PAYVFVAIEALADGG 188 (267)
T ss_pred hhhcCcE---------EEeeCC--CcchhhHHHHHHHHHhcC--cceeCcHHhhhHHhhccCCc-HHHHHHHHHHHhccc
Confidence 6666654 222222 112455688888988875 22222211111111121111 112223344455566
Q ss_pred HHhCCCHHHHHHHh
Q 017997 238 EATGANVSQVAFAV 251 (362)
Q Consensus 238 ~~~g~d~~~v~~~~ 251 (362)
-++|+..+.-.+..
T Consensus 189 VkmGlPr~lA~~la 202 (267)
T KOG3124|consen 189 VKMGLPRQLAYRLA 202 (267)
T ss_pred cccCCCHHHHHHHH
Confidence 66777766555543
No 269
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.83 E-value=0.0038 Score=59.55 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=43.4
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIE---VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~---V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
||||+|+| .|++|.-+...|+++ +|+ +..+.++++.-+.+. + . ...+.+.+.....+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~--~hp~~~l~~l~s~~~~g~~l~-----~--~----------g~~i~v~d~~~~~~ 61 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER--NFPVDKLRLLASARSAGKELS-----F--K----------GKELKVEDLTTFDF 61 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCCcceEEEEEccccCCCeee-----e--C----------CceeEEeeCCHHHH
Confidence 68999999 599999999999987 665 466655433221111 0 0 01233332112236
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
+++|+||.|+|.
T Consensus 62 ~~vDvVf~A~g~ 73 (334)
T PRK14874 62 SGVDIALFSAGG 73 (334)
T ss_pred cCCCEEEECCCh
Confidence 799999999773
No 270
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.82 E-value=0.014 Score=57.88 Aligned_cols=41 Identities=12% Similarity=0.265 Sum_probs=38.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|.|+|+|.+|..++..|.+. |++|+++|.++++++.+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAE 272 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence 6899999999999999999998 9999999999999998875
No 271
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.70 E-value=0.0071 Score=57.77 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=34.6
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
||+|.|.|+ |++|..++..|.+.+ |++|+++|++.+....+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~-~~~V~~~~r~~~~~~~~ 42 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETT-DWEVYGMDMQTDRLGDL 42 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCC-CCeEEEEeCcHHHHHHh
Confidence 789999996 999999999998752 69999999987665544
No 272
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.68 E-value=0.0058 Score=58.31 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=33.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|||+|.+|+.+|..|++. |+ +++++|.|.-....|++
T Consensus 25 ~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D~ve~sNL~R 66 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA--GIGKLTIADRDYVEWSNLQR 66 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCcccccccCc
Confidence 4799999999999999999999 77 89999998644444443
No 273
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.65 E-value=0.024 Score=50.92 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=33.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeC----------CHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDI----------SVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~----------~~~~~~~l~~ 44 (362)
++|+|.|.|.+|..+|..|.+. |.+|+ +.|. |.+.+..+.+
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~ 83 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKK 83 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHH
Confidence 5899999999999999999998 99999 5576 6666555443
No 274
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.65 E-value=0.013 Score=49.62 Aligned_cols=72 Identities=24% Similarity=0.391 Sum_probs=48.7
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|.|||-+ .+|.|++..|.++ |..|+..+.. |.++++.+++||
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~--~atVt~~h~~---------------------------------T~~l~~~~~~AD 81 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNK--GATVTICHSK---------------------------------TKNLQEITRRAD 81 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHT--T-EEEEE-TT---------------------------------SSSHHHHHTTSS
T ss_pred CEEEEECCcCCCChHHHHHHHhC--CCeEEeccCC---------------------------------CCcccceeeecc
Confidence 589999977 6999999999999 8999998753 134555688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeC
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKST 128 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ST 128 (362)
+||.+++.|--. . ...++++.+||+.++
T Consensus 82 IVVsa~G~~~~i--------------~------~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 82 IVVSAVGKPNLI--------------K------ADWIKPGAVVIDVGI 109 (160)
T ss_dssp EEEE-SSSTT-B---------------------GGGS-TTEEEEE--C
T ss_pred EEeeeecccccc--------------c------cccccCCcEEEecCC
Confidence 999999865311 1 245789999887443
No 275
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.63 E-value=0.0045 Score=60.94 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=31.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
.+|.|||+|.+|.++|..|.+. |++|+++|++++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~--G~~V~g~D~~~~~ 38 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK--GVYVIGVDKSLEA 38 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC--CCEEEEEeCCccc
Confidence 5899999999999999999998 9999999987654
No 276
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.63 E-value=0.022 Score=54.46 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALK 23 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~ 23 (362)
+||+|+|+|.||..++..|.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 6899999999999999988754
No 277
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.62 E-value=0.04 Score=55.43 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=48.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|.|+|+|..|.+.+..|... |++|+++|.+++..+.+.+.... +....+..+.++++|+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~l~~~g~~-----------------~~~~~~~~~~l~~~D~ 73 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRPHAERGVA-----------------TVSTSDAVQQIADYAL 73 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHhCCCE-----------------EEcCcchHhHhhcCCE
Confidence 4799999999999999888888 99999999887766555431111 1111122233678899
Q ss_pred EEEeccCCC
Q 017997 82 VFVSVNTPT 90 (362)
Q Consensus 82 Vii~vptp~ 90 (362)
||.+-.-|.
T Consensus 74 VV~SpGi~~ 82 (488)
T PRK03369 74 VVTSPGFRP 82 (488)
T ss_pred EEECCCCCC
Confidence 998865543
No 278
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.60 E-value=0.083 Score=48.10 Aligned_cols=200 Identities=14% Similarity=0.150 Sum_probs=107.9
Q ss_pred CEEEecCHHhhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 65 NLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 65 ~l~~t~d~~~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+++.++|-.+|++++|++++-+| .... . ...++.+.++++.+.+|..+.|+|+-.. ..+++..
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftP--fG~~------q------~~Iikkii~~lpEgAII~~tCTIpt~~l---y~ilE~l 188 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLP--KGNK------Q------PDIIKKFIDDIPEGAIVTHACTIPTTKF---AKIFEDL 188 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcC--CCCC------c------hHHHHHHHhhCCCCCEEeccccCChHHH---HHHHHhh
Confidence 35677777788999999999965 3220 1 4578899999999999999999987543 3334443
Q ss_pred cCCCceEE-eeCCcccccCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-Ch--hHHHHHHHH--
Q 017997 145 SKGIKFQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NL--WSAELSKLA-- 218 (362)
Q Consensus 145 ~~g~~~~v-~~~Pe~~~~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~--~~ae~~Kl~-- 218 (362)
++ .++.+ .|+|- ..||.. .. ..++-+. .+++..+++.+|-++.. +..+... +. ..+.|.-++
T Consensus 189 ~R-~DvgVsS~HPa-aVPgt~-----~q-~Yi~egy---AtEEqI~klveL~~sa~-k~ay~~PA~LvspV~DMgS~VTA 256 (340)
T TIGR01723 189 GR-EDLNVTSYHPG-CVPEMK-----GQ-VYIAEGY---ASEEAVNKLYELGKKAR-GKAFKMPANLLGPVCDMCSAVTA 256 (340)
T ss_pred Cc-ccCCeeccCCC-CCCCCC-----Cc-eEeeccc---CCHHHHHHHHHHHHHhC-CCeeecchhhccchhhHHHHHHH
Confidence 22 23333 36774 335543 11 1223223 35889999999988876 3444332 21 112222211
Q ss_pred --HhH---HHHHHHHHHHHHHHHHHHh-CCCHHHHHHHhcCCCCCCCCCccCCCCCcccChhHhHHHHHHHHHhCCCchh
Q 017997 219 --ANA---FLAQRISSVNAMSALCEAT-GANVSQVAFAVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV 292 (362)
Q Consensus 219 --~N~---~~~~~ia~~nE~~~l~~~~-g~d~~~v~~~~~~~~~i~~~~~~~g~g~gg~cl~kD~~~l~~~a~~~g~~~~ 292 (362)
--+ |++.-...++-=..+++.+ .....++..++... |+.|--=--||.+|+..|++..+-+.
T Consensus 257 v~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~tmasLme~~------------GI~gm~~aLnPeaL~~tAdSM~~~~~ 324 (340)
T TIGR01723 257 IVYAGLLAYRDAVTKILGAPADFAQMMADEALTQIHNLMEEK------------GIDKMEEALDPAALLGTADSMNFGPL 324 (340)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHhcCHHHHhhhhhhcccchH
Confidence 111 1211111222112222221 11223333333321 33332223377788888888766555
Q ss_pred HHHHHHHHHHHHH
Q 017997 293 AEYWKQVIKINDY 305 (362)
Q Consensus 293 ~~~~~~~~~~N~~ 305 (362)
.+++.+++++=+.
T Consensus 325 q~~L~~aL~vLe~ 337 (340)
T TIGR01723 325 ADILPTALEVLEK 337 (340)
T ss_pred HHHHHHHHHHHHh
Confidence 6677777766543
No 279
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.53 E-value=0.018 Score=48.60 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=31.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
.+|.|||.|.+|...+..|.+. |++|++++. +..+.+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp--~~~~~l~ 51 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDT--GAFVTVVSP--EICKEMK 51 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcC--ccCHHHH
Confidence 4799999999999999999998 999999963 4444443
No 280
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.52 E-value=0.015 Score=43.66 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=27.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI 34 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~ 34 (362)
.+++|+|.|.+|.+++..+.+.+ +.+|.+||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 48999999999999999999873 467877775
No 281
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.47 E-value=0.038 Score=55.08 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.||.|+|+|.-|.++|..|.+. |++|+++|.++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL--GAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 5899999999999999999999 99999999864
No 282
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.45 E-value=0.013 Score=54.10 Aligned_cols=70 Identities=26% Similarity=0.396 Sum_probs=54.4
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||-|. +|.|+|..|... |..|+.+... |.++.+.+++||
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 204 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLA--GCTVTVCHRF---------------------------------TKNLRHHVRNAD 204 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCeEEEEECC---------------------------------CCCHHHHHhhCC
Confidence 4799999988 999999999988 8999998753 234556688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|.- +. ..+++++++|++-
T Consensus 205 Ivi~avG~p~~--------------v~------~~~vk~gavVIDv 230 (285)
T PRK10792 205 LLVVAVGKPGF--------------IP------GEWIKPGAIVIDV 230 (285)
T ss_pred EEEEcCCCccc--------------cc------HHHcCCCcEEEEc
Confidence 99999976521 11 1567899999863
No 283
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.45 E-value=0.04 Score=52.93 Aligned_cols=97 Identities=23% Similarity=0.273 Sum_probs=58.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc-CCCCC-CCCChHHHHhhhcCCCEEEecCHHhhh--cC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS-DQLPI-YEPGLDGVVKQCRGKNLFFSTDVEKHV--SE 78 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~-~~~~~-~e~~l~~~~~~~~~~~l~~t~d~~~a~--~~ 78 (362)
++.|+|+|.||+-.++.+...+ -.+|++.|+++++++..++ +.... ..+.-+.... ...+.. ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~-----------~~~~~t~g~g 238 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGA-----------EILELTGGRG 238 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHH-----------HHHHHhCCCC
Confidence 6899999999996655555552 3689999999999998876 32211 1100000000 000111 36
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
+|++|.|++++ .++++..+.++++-.|+.-+..
T Consensus 239 ~D~vie~~G~~------------------~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVGSP------------------PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCCCH------------------HHHHHHHHHhcCCCEEEEEecc
Confidence 99999998742 3555666666776666554543
No 284
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.45 E-value=0.012 Score=57.96 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=45.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--------CCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC--------PSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDV 72 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~--------~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~ 72 (362)
+||+|+|+|.||..++..|.++. .+.+| .++|+++++.+.+. .....+++|+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-------------------~~~~~~~~d~ 64 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-------------------LPGILLTTDP 64 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-------------------CcccceeCCH
Confidence 58999999999999988876541 12344 45688866532110 0123467888
Q ss_pred Hhhhc--CCcEEEEeccC
Q 017997 73 EKHVS--EADIVFVSVNT 88 (362)
Q Consensus 73 ~~a~~--~aDvVii~vpt 88 (362)
++.+. +.|+|++|+++
T Consensus 65 ~~ll~d~~iDvVve~tg~ 82 (426)
T PRK06349 65 EELVNDPDIDIVVELMGG 82 (426)
T ss_pred HHHhhCCCCCEEEECCCC
Confidence 88764 57999999764
No 285
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.41 E-value=0.017 Score=55.41 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=47.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-ChHHHHhhhcCCCEEEe-cCHHhhhcC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-GLDGVVKQCRGKNLFFS-TDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~-~l~~~~~~~~~~~l~~t-~d~~~a~~~ 78 (362)
+||+|+| .|++|..+...|.+. |..+++++..+++...+......++.+. .+... ...+.+. .+++. +.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~ 76 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEE-----VADMEVVSTDPEA-VDD 76 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEcChhhcCCccccccccccccccccc-----ccceEEEeCCHHH-hcC
Confidence 6999998 899999999999875 4669999876664433211111111100 00000 0123332 34444 689
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
+|+||.|+|.
T Consensus 77 ~DvVf~a~p~ 86 (349)
T PRK08664 77 VDIVFSALPS 86 (349)
T ss_pred CCEEEEeCCh
Confidence 9999999874
No 286
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.38 E-value=0.017 Score=53.50 Aligned_cols=70 Identities=30% Similarity=0.408 Sum_probs=53.0
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||-| .+|.|+|..|.++ |..|+++... |.++.+.+++||
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~--gAtVtv~hs~---------------------------------t~~l~~~~~~AD 202 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNA--GASVSVCHIL---------------------------------TKDLSFYTQNAD 202 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHC--CCEEEEEeCC---------------------------------cHHHHHHHHhCC
Confidence 479999999 9999999999998 8999988532 123445588999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|--. . ...++++.+|++.
T Consensus 203 IvV~AvG~p~~i--------------~------~~~vk~GavVIDv 228 (285)
T PRK14191 203 IVCVGVGKPDLI--------------K------ASMVKKGAVVVDI 228 (285)
T ss_pred EEEEecCCCCcC--------------C------HHHcCCCcEEEEe
Confidence 999999866321 1 1345889998863
No 287
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.36 E-value=0.021 Score=56.18 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=68.6
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec--CHHhhhcC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST--DVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~--d~~~a~~~ 78 (362)
+|||.|+|+|.-|.+.|..|.+. |++|+++|.++.. +..... +..++ ++.+.. ...+....
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~--G~~v~v~D~~~~~-~~~~~~--~~~~~------------~i~~~~g~~~~~~~~~ 69 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL--GAEVTVSDDRPAP-EGLAAQ--PLLLE------------GIEVELGSHDDEDLAE 69 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC--CCeEEEEcCCCCc-cchhhh--hhhcc------------CceeecCccchhcccc
Confidence 37999999999999999999999 9999999977654 111000 00011 111111 11134778
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH-------H--HHhhc-CCCCEEEEeeCCccccH-HHHHHHHHhcc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR-------V--IADVS-KSDKIVVEKSTVPVKTA-EAIEKILTHNS 145 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~-------~--i~~~l-~~~~iVv~~STv~~gt~-~~l~~~l~~~~ 145 (362)
+|+|+..=.-|.+ ...+..+.. . +.-.. .+..+|.++.|..-.|| ..+..++.+.+
T Consensus 70 ~d~vV~SPGi~~~-----------~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G 136 (448)
T COG0771 70 FDLVVKSPGIPPT-----------HPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAG 136 (448)
T ss_pred CCEEEECCCCCCC-----------CHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 9999988444432 223333321 1 11112 24458877888765555 44566776643
No 288
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.32 E-value=0.019 Score=54.38 Aligned_cols=85 Identities=13% Similarity=0.206 Sum_probs=53.6
Q ss_pred EEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcC-CCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 4 ICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSD-QLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 4 I~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~-~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
|+|+|+|.+|..++..+.+. ++.+|+++ |.+++....+... +.+.+. ...+.........+....++++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~-~d~elVaVnD~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~~~l~v~g~~eeLl~~vDi 78 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-DDMKLVGVTKTSPDFEAYRAKELGIPVYA-ASEEFIPRFEEAGIEVAGTLEDLLEKVDI 78 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-CCcEEEEEecCChHHHHHHHHHhCCCEEe-ecCCcceEeccCceEecCCHHHHhhcCCE
Confidence 68999999999999998765 47787765 7777755444431 112211 00000000012346666778888899999
Q ss_pred EEEeccCCC
Q 017997 82 VFVSVNTPT 90 (362)
Q Consensus 82 Vii~vptp~ 90 (362)
|+.|+|...
T Consensus 79 Vve~Tp~~~ 87 (333)
T TIGR01546 79 VVDATPGGI 87 (333)
T ss_pred EEECCCCCC
Confidence 999977543
No 289
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.29 E-value=0.005 Score=54.84 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=43.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--C
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--E 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~ 78 (362)
.+|+|||+|.+|..++..+....+|+++++ +|.++++......+ .+ +...+++.+.++ +
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g-~~-----------------v~~~~~l~~li~~~~ 146 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG-IP-----------------VYHIDELEEVVKEND 146 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC-eE-----------------EcCHHHHHHHHHHCC
Confidence 479999999999999886432223888776 58887655321111 11 111234445443 5
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
.|.+++|+|.
T Consensus 147 iD~ViIa~P~ 156 (213)
T PRK05472 147 IEIGILTVPA 156 (213)
T ss_pred CCEEEEeCCc
Confidence 9999999874
No 290
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.28 E-value=0.074 Score=53.29 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|..|..+|..|++. |++|+++|.++
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4799999999999999999998 99999999654
No 291
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.28 E-value=0.038 Score=48.90 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=45.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec---CHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST---DVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~---d~~~a~~ 77 (362)
.+|.|||.|.+|..-+..|.+. |.+|++++.+.. .++.+.+. +++++.. +.. .+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~------------------~~i~~~~~~~~~~-dl~ 68 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQ------------------GGITWLARCFDAD-ILE 68 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHc------------------CCEEEEeCCCCHH-HhC
Confidence 4799999999999999999998 899999987542 23333221 2333211 222 378
Q ss_pred CCcEEEEecc
Q 017997 78 EADIVFVSVN 87 (362)
Q Consensus 78 ~aDvVii~vp 87 (362)
++++||+|++
T Consensus 69 ~~~lVi~at~ 78 (205)
T TIGR01470 69 GAFLVIAATD 78 (205)
T ss_pred CcEEEEECCC
Confidence 9999999965
No 292
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.27 E-value=0.039 Score=52.24 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=34.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.+|+|+|+|-+|. +|..+|++- |.+|+++|+++++.+..++
T Consensus 168 ~~V~I~G~GGlGh-~avQ~Aka~-ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGH-MAVQYAKAM-GAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHH-HHHHHHHHc-CCeEEEEeCChHHHHHHHH
Confidence 3799999998886 677777642 8999999999999987765
No 293
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.24 E-value=0.006 Score=59.74 Aligned_cols=34 Identities=35% Similarity=0.449 Sum_probs=31.7
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|.+|.|||.|.+|+++|..|++. |++|+++|+++
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 56999999999999999999998 99999999874
No 294
>PRK01581 speE spermidine synthase; Validated
Probab=96.23 E-value=0.27 Score=47.13 Aligned_cols=141 Identities=18% Similarity=0.226 Sum_probs=77.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcC-CCC-CCCCChHHHHhhhcCCCEEE-ecCHHhhh--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSD-QLP-IYEPGLDGVVKQCRGKNLFF-STDVEKHV-- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~-~~~-~~e~~l~~~~~~~~~~~l~~-t~d~~~a~-- 76 (362)
.+|.|||+| .|.. +..+.+..+.-+|+++|+|++.++..++- ..+ +....+ ...++++ ..|..+-+
T Consensus 152 krVLIIGgG-dG~t-lrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~-------~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 152 KRVLILGGG-DGLA-LREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF-------FDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred CEEEEECCC-HHHH-HHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC-------CCCceEEEECcHHHHHHh
Confidence 479999988 4443 34455542246899999999999877741 000 000000 0123433 23433322
Q ss_pred --cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH---HHHHHHHhccCCCceE
Q 017997 77 --SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE---AIEKILTHNSKGIKFQ 151 (362)
Q Consensus 77 --~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~---~l~~~l~~~~~g~~~~ 151 (362)
...|+||+-+|.|... ...--+-.+.++.+.+.|+++.+++..+..+....+ .+...+++.......+
T Consensus 223 ~~~~YDVIIvDl~DP~~~-------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 223 PSSLYDVIIIDFPDPATE-------LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred cCCCccEEEEcCCCcccc-------chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 3579999998766432 111123356788899999999988776654432222 2334454443212223
Q ss_pred EeeCCcc
Q 017997 152 ILSNPEF 158 (362)
Q Consensus 152 v~~~Pe~ 158 (362)
..+-|.+
T Consensus 296 ~t~vPsy 302 (374)
T PRK01581 296 HTIVPSF 302 (374)
T ss_pred EEecCCC
Confidence 4456665
No 295
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.23 E-value=0.031 Score=55.76 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=66.1
Q ss_pred ceEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEE--ecCHHhhhc
Q 017997 2 VKICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFF--STDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~--t~d~~~a~~ 77 (362)
++|.|+|+|..|.+ +|..|.+. |++|+++|.++. ..+.+.+. .+.+ ..+. +.+.
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~~~~~~~l~~~-------------------gi~~~~~~~~-~~~~ 65 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKESAVTQRLLEL-------------------GAIIFIGHDA-ENIK 65 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCH-HHCC
Confidence 58999999999999 79999998 999999997643 22233321 1222 1222 3367
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HH-HhhcCCCCEEEEeeCCccccHH-HHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VI-ADVSKSDKIVVEKSTVPVKTAE-AIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~---------~i-~~~l~~~~iVv~~STv~~gt~~-~l~~~l~~~ 144 (362)
++|+||++-.-|.+ . ..++.+.+ ++ ...+++..+|.++.|..=.||. .+..+|+..
T Consensus 66 ~~d~vv~spgi~~~--------~---~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~ 132 (461)
T PRK00421 66 DADVVVYSSAIPDD--------N---PELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA 132 (461)
T ss_pred CCCEEEECCCCCCC--------C---HHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence 89998887443322 1 22222211 12 2233344678777777655554 456777654
No 296
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.23 E-value=0.031 Score=50.77 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=35.4
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
+|+|.|+|+ |.+|..++..|+++ ||+|+++.|++++...+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEecCHHHHHHh
Confidence 478999995 99999999999998 99999999998876554
No 297
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.22 E-value=0.0076 Score=53.61 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=33.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|+|||+|.+|+.+|..|++. |. +++++|.|.-....+++
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~R 70 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFDVVEPSNLNR 70 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCEeccccccc
Confidence 3799999999999999999999 65 69999998443444443
No 298
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.21 E-value=0.026 Score=52.43 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=42.2
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|+|.|. +|.|+|..|.+. |.+|+++++.. .++.+.++++|
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~--gatVtv~~~~t---------------------------------~~L~~~~~~aD 204 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNA--NATVTICHSRT---------------------------------QNLPELVKQAD 204 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC--CCEEEEEeCCc---------------------------------hhHHHHhccCC
Confidence 4799999997 999999999988 78999998621 12233468899
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.|++.|
T Consensus 205 IvI~AtG~~ 213 (283)
T PRK14192 205 IIVGAVGKP 213 (283)
T ss_pred EEEEccCCC
Confidence 999998643
No 299
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.19 E-value=0.036 Score=45.83 Aligned_cols=69 Identities=25% Similarity=0.427 Sum_probs=47.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
++|.|+| ...+|.++|..|.+. |.+|+.++.+ |.++++.+++||
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~--gatV~~~~~~---------------------------------t~~l~~~v~~AD 73 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRD--GATVYSCDWK---------------------------------TIQLQSKVHDAD 73 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCC
Confidence 3677777 456777777777776 6777777642 124566789999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+|+.+++.+.. .+ .+.+++|++|++
T Consensus 74 IVvsAtg~~~~---------i~-----------~~~ikpGa~Vid 98 (140)
T cd05212 74 VVVVGSPKPEK---------VP-----------TEWIKPGATVIN 98 (140)
T ss_pred EEEEecCCCCc---------cC-----------HHHcCCCCEEEE
Confidence 99999886521 11 245789999885
No 300
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.19 E-value=0.021 Score=54.42 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=40.4
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhhhc
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~-~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (362)
||||+|+|+ |++|.-+...|.++ .|..++..+... +.. |. ++...+ ..+.+.. +..+ ++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a-----G~-~l~~~~----------~~l~~~~~~~~~-~~ 65 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA-----GH-SVPFAG----------KNLRVREVDSFD-FS 65 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC-----CC-eeccCC----------cceEEeeCChHH-hc
Confidence 468999996 99999999999976 122344444332 211 21 111111 1133322 2233 68
Q ss_pred CCcEEEEecc
Q 017997 78 EADIVFVSVN 87 (362)
Q Consensus 78 ~aDvVii~vp 87 (362)
++|++|+|+|
T Consensus 66 ~vD~vFla~p 75 (336)
T PRK05671 66 QVQLAFFAAG 75 (336)
T ss_pred CCCEEEEcCC
Confidence 9999999987
No 301
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.19 E-value=0.0064 Score=59.52 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=31.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|+|||.|.+|+++|..|++. |++|+++|++..
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence 7999999999999999999999 999999999753
No 302
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.19 E-value=0.015 Score=54.02 Aligned_cols=72 Identities=11% Similarity=0.103 Sum_probs=51.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe---cCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS---TDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t---~d~~~a~~ 77 (362)
.++.|||+|-+|.+++..|++. |. +|++++|++++.+.+.+.... ...+... ++..+.+.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~--G~~~i~I~nRt~~ka~~La~~~~~--------------~~~~~~~~~~~~~~~~~~ 189 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASL--GVTDITVINRNPDKLSRLVDLGVQ--------------VGVITRLEGDSGGLAIEK 189 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhhh--------------cCcceeccchhhhhhccc
Confidence 3689999999999999999998 65 799999999999888652100 0011111 22234467
Q ss_pred CCcEEEEeccCC
Q 017997 78 EADIVFVSVNTP 89 (362)
Q Consensus 78 ~aDvVii~vptp 89 (362)
++|+||-|+|..
T Consensus 190 ~~DiVInaTp~g 201 (282)
T TIGR01809 190 AAEVLVSTVPAD 201 (282)
T ss_pred CCCEEEECCCCC
Confidence 899999997653
No 303
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.16 E-value=0.034 Score=48.35 Aligned_cols=87 Identities=24% Similarity=0.299 Sum_probs=56.8
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe--cC----HHh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TD----VEK 74 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d----~~~ 74 (362)
.+|+|||- ..+|.|+|..|.++ |..|+.+|++.-.. ...+.. . +-..| .| ..+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~--~AtVti~~~~~~~~--~~~~~~-~---------------~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLAND--GARVYSVDINGIQV--FTRGES-I---------------RHEKHHVTDEEAMTLD 122 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEEecCcccc--cccccc-c---------------ccccccccchhhHHHH
Confidence 47999995 67899999999998 89999999763221 111000 0 00111 12 556
Q ss_pred hhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 75 HVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 75 a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
.+++||+||.+++.|--. +. .+.+++|++||+-+
T Consensus 123 ~~~~ADIVIsAvG~~~~~-------------i~------~d~ik~GavVIDVG 156 (197)
T cd01079 123 CLSQSDVVITGVPSPNYK-------------VP------TELLKDGAICINFA 156 (197)
T ss_pred HhhhCCEEEEccCCCCCc-------------cC------HHHcCCCcEEEEcC
Confidence 689999999999865310 11 23467999998744
No 304
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.12 E-value=0.01 Score=43.89 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=30.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
||.|||.|++|.-+|..|++. |.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccch
Confidence 689999999999999999998 999999998753
No 305
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=96.12 E-value=0.026 Score=54.01 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=27.0
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEE-eCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVV-DIS 35 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~-d~~ 35 (362)
|||+|+|+ |++|..++..|.++ +.++++.+ +.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~~l~~v~~~~ 35 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYFELAKVVASP 35 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCceEEEEEECh
Confidence 69999995 99999999988886 34688877 544
No 306
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.10 E-value=0.12 Score=51.23 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|+|+|..|.++|..|.+. |++|+++|..+
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 39 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQ--GIPFAVMDSRE 39 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhC--CCeEEEEeCCC
Confidence 589999999999999999998 99999999754
No 307
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.09 E-value=0.069 Score=53.49 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=33.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINA 41 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~ 41 (362)
++|.|+|+|..|.++|..|.+. |++|+++|++.....+
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~~~~~~ 53 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL--GCDVVVADDNETARHK 53 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC--CCEEEEECCChHHHHH
Confidence 5799999999999999999999 9999999987655433
No 308
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.91 Score=42.49 Aligned_cols=228 Identities=13% Similarity=0.196 Sum_probs=130.3
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH---HHH-HHHHcCCCCCCCCChHHHHhhhcCCCEE---EecCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV---SRI-NAWNSDQLPIYEPGLDGVVKQCRGKNLF---FSTDVE 73 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~---~~~-~~l~~~~~~~~e~~l~~~~~~~~~~~l~---~t~d~~ 73 (362)
|.++-++|+|.+..-+|.-+..++ ..++=.+++-. +++ ++++.+ ..++-.+-.+..+. ..|+.. +-.|++
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~-~ql~l~~q~eahr~-leg~~~id~~~kd~a 80 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALT-PQLYLQGQGEAHRQ-LEGSVTIDCYIKDLA 80 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcC-CeEEEEeccHHHHh-hcCceehhHHHhhHH
Confidence 457899999999999999998873 45666676533 222 333332 22333333333222 234432 345677
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHH-hhcCC-CCEEEEeeCCccccHHHHHHHHHhccCCCceE
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIA-DVSKS-DKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQ 151 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~-~~l~~-~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~ 151 (362)
++..+-+-+|+|||+. .-.+++++|- +.++. .++|.+++|+..+. .+...+.+. |.+..
T Consensus 81 ~~~~dwqtlilav~aD---------------aY~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~mnk~--~~dae 141 (431)
T COG4408 81 QAVGDWQTLILAVPAD---------------AYYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLMNKA--GRDAE 141 (431)
T ss_pred HhhchhheEEEEeecH---------------HHHHHHhcCCHhHhccccEEEEecccccccH--HHHHHHhhh--CCCce
Confidence 7778899999999853 2356776663 22332 45566666664442 222223332 23334
Q ss_pred EeeCCcccc---------cCccccccCCCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeCChhHHHHHH------
Q 017997 152 ILSNPEFLA---------EGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSK------ 216 (362)
Q Consensus 152 v~~~Pe~~~---------~g~a~~~~~~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ae~~K------ 216 (362)
|++-....+ |-++.-.-.+ .+|.+|+... +....+.+.+++...+. ......++..||.-.
T Consensus 142 ViS~SsY~~dTk~id~~~p~~alTkavK-kriYlgs~~~--ns~~~e~l~~v~aq~~I-~v~~~esp~~AEtrnit~YVH 217 (431)
T COG4408 142 VISLSSYYADTKYIDAEQPNRALTKAVK-KRIYLGSQHG--NSGSAEMLTAVLAQHGI-DVEPCESPLAAETRNITLYVH 217 (431)
T ss_pred EEEeehhcccceeecccCcchHHHHHHh-HheeeccCCC--CChHHHHHHHHHHhcCC-ceEEcCChhhhhhcccceeec
Confidence 433221111 1111111111 2477886533 34567889999988753 233445777776431
Q ss_pred -------HH-----------------------HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 017997 217 -------LA-----------------------ANAFLAQRISSVNAMSALCEATGANVSQVAFAVGTD 254 (362)
Q Consensus 217 -------l~-----------------------~N~~~~~~ia~~nE~~~l~~~~g~d~~~v~~~~~~~ 254 (362)
+. .-+...-+...+.|++++..++|+..-.+++.++.|
T Consensus 218 pPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~dd 285 (431)
T COG4408 218 PPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDD 285 (431)
T ss_pred CcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccC
Confidence 11 112233455788899999999999999999999875
No 309
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.05 E-value=0.034 Score=51.47 Aligned_cols=70 Identities=23% Similarity=0.370 Sum_probs=53.7
Q ss_pred ceEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGY-VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~-~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||-+. +|.|+|..|.+. |..|++++.. |.|+.+.+++||
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 209 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNR--NATVSVCHVF---------------------------------TDDLKKYTLDAD 209 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHC--CCEEEEEecc---------------------------------CCCHHHHHhhCC
Confidence 4799999988 999999999988 8999998742 234555688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++-|.- +. ...++++++||+-
T Consensus 210 Ivv~AvG~p~~--------------i~------~~~vk~gavVIDv 235 (287)
T PRK14176 210 ILVVATGVKHL--------------IK------ADMVKEGAVIFDV 235 (287)
T ss_pred EEEEccCCccc--------------cC------HHHcCCCcEEEEe
Confidence 99999886631 11 1257889998863
No 310
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.04 E-value=0.014 Score=51.49 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=32.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~ 43 (362)
.||.|+|+|.+|+.+|..|+.. |. +++++|.|.-....++
T Consensus 22 ~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d~ve~sNL~ 62 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDDHVDLSNLQ 62 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCCEEcccchh
Confidence 3799999999999999999999 75 8999998844333343
No 311
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.04 E-value=0.027 Score=43.98 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=42.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
.+|.|||.|.+|..=+..|.+. |.+|+++..+.+. .. +... +. ...+++.+.++++
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~~~~---~~-~~i~-----------------~~-~~~~~~~l~~~~l 63 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA--GAKVTVISPEIEF---SE-GLIQ-----------------LI-RREFEEDLDGADL 63 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC--TBEEEEEESSEHH---HH-TSCE-----------------EE-ESS-GGGCTTESE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCchhh---hh-hHHH-----------------HH-hhhHHHHHhhheE
Confidence 4799999999999999999998 8999999987511 11 1111 11 1223344888999
Q ss_pred EEEecc
Q 017997 82 VFVSVN 87 (362)
Q Consensus 82 Vii~vp 87 (362)
||+|++
T Consensus 64 V~~at~ 69 (103)
T PF13241_consen 64 VFAATD 69 (103)
T ss_dssp EEE-SS
T ss_pred EEecCC
Confidence 999965
No 312
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.02 E-value=0.091 Score=52.38 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=32.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
++|.|+|+|..|.+.|..|.+. |++|+++|..+.....+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~~~l 48 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG--GAEVIAWDDNPASRAKA 48 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEECCChhhHHHH
Confidence 4799999999999999999888 99999999875544434
No 313
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.00 E-value=0.04 Score=52.40 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=51.3
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|.|+|+ |.||..++..|+.++ | .+++++++++++++.+.+... .+.+ .+..+++.++
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~~rl~~La~el~---------------~~~i---~~l~~~l~~a 216 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQERLQELQAELG---------------GGKI---LSLEEALPEA 216 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCHHHHHHHHHHhc---------------cccH---HhHHHHHccC
Confidence 57999998 899999999998541 3 689999999988887754210 0111 2456678999
Q ss_pred cEEEEeccCC
Q 017997 80 DIVFVSVNTP 89 (362)
Q Consensus 80 DvVii~vptp 89 (362)
|+|+.+...|
T Consensus 217 DiVv~~ts~~ 226 (340)
T PRK14982 217 DIVVWVASMP 226 (340)
T ss_pred CEEEECCcCC
Confidence 9999997654
No 314
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.99 E-value=0.089 Score=52.39 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
||.|||+|..|.+.|..|++. |++|+++|+++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~--G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ--GWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence 799999999999999999998 99999999764
No 315
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.99 E-value=0.025 Score=52.38 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=31.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~ 39 (362)
+|.|+|+ |++|..++..|.+. |++|.+..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCCCccc
Confidence 5889987 99999999999998 99999999998754
No 316
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.99 E-value=0.039 Score=51.92 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=24.2
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEE
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVV 32 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~ 32 (362)
++||+|+| .||+|.-+...|.++ |..++...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~~l~~~ 33 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR-SDIELLSI 33 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC-CCeEEEEE
Confidence 46999999 699999999999887 34444444
No 317
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.97 E-value=0.032 Score=52.23 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=39.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
-||+|+| .||.|.-+.+.|+.+ |..++....-+.. +. ..+.++.++++|
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~~~----------------------------~~-~~~~~~~~~~~D 51 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPDRR----------------------------KD-AAERAKLLNAAD 51 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-CCeEEEEEecccc----------------------------cC-cCCHhHhhcCCC
Confidence 4899999 599999999999987 5556655532211 00 012344457899
Q ss_pred EEEEeccC
Q 017997 81 IVFVSVNT 88 (362)
Q Consensus 81 vVii~vpt 88 (362)
++|+|+|.
T Consensus 52 ~vFlalp~ 59 (310)
T TIGR01851 52 VAILCLPD 59 (310)
T ss_pred EEEECCCH
Confidence 99999874
No 318
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.96 E-value=0.022 Score=54.19 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=53.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh-hhcC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALK-CPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK-HVSE 78 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~-~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~-a~~~ 78 (362)
|||+|||+ |++|.-+...|+++ .|..++..+..+.. .|. ++...+ ..+.+. +.++ ...+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s------aG~-~~~~~~----------~~~~v~-~~~~~~~~~ 66 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEES------AGE-TLRFGG----------KSVTVQ-DAAEFDWSQ 66 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc------CCc-eEEECC----------cceEEE-eCchhhccC
Confidence 69999996 99999999999974 35567777744321 121 111111 124443 2222 2378
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhh-cCCCCEEEEeeC
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADV-SKSDKIVVEKST 128 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~-l~~~~iVv~~ST 128 (362)
+|++|+|+|.. +...+.+. ...+..||+.|.
T Consensus 67 ~Dvvf~a~p~~-------------------~s~~~~~~~~~~g~~VIDlS~ 98 (336)
T PRK08040 67 AQLAFFVAGRE-------------------ASAAYAEEATNAGCLVIDSSG 98 (336)
T ss_pred CCEEEECCCHH-------------------HHHHHHHHHHHCCCEEEECCh
Confidence 99999998732 23333333 246788887664
No 319
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.92 E-value=0.038 Score=49.52 Aligned_cols=72 Identities=15% Similarity=0.138 Sum_probs=49.8
Q ss_pred EEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 4 ICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV--SRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 4 I~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~--~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|+|+ |.+|.+++..|.+. +++|.++-|++ +..+.+++....+-+-+ +.-.+++.++++++|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~--~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d------------~~~~~~l~~al~g~d 66 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA--GFSVRALVRDPSSDRAQQLQALGAEVVEAD------------YDDPESLVAALKGVD 66 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TGCEEEEESSSHHHHHHHHHHTTTEEEES-------------TT-HHHHHHHHTTCS
T ss_pred CEEECCccHHHHHHHHHHHhC--CCCcEEEEeccchhhhhhhhcccceEeecc------------cCCHHHHHHHHcCCc
Confidence 789996 99999999999997 99999999985 34556654321111100 101123456789999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
.||++++..
T Consensus 67 ~v~~~~~~~ 75 (233)
T PF05368_consen 67 AVFSVTPPS 75 (233)
T ss_dssp EEEEESSCS
T ss_pred eEEeecCcc
Confidence 999998743
No 320
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.89 E-value=0.034 Score=51.32 Aligned_cols=70 Identities=31% Similarity=0.547 Sum_probs=52.7
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|||-+ .+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~--~AtVti~hs~---------------------------------T~~l~~~~~~AD 202 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNA--NATVDICHIF---------------------------------TKDLKAHTKKAD 202 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCC
Confidence 479999987 9999999999988 8899876431 234555688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|.-. . ...+++|++|++.
T Consensus 203 IvV~AvGkp~~i--------------~------~~~vk~gavvIDv 228 (281)
T PRK14183 203 IVIVGVGKPNLI--------------T------EDMVKEGAIVIDI 228 (281)
T ss_pred EEEEecCccccc--------------C------HHHcCCCcEEEEe
Confidence 999999865311 1 2456889998863
No 321
>PLN02427 UDP-apiose/xylose synthase
Probab=95.84 E-value=0.012 Score=57.08 Aligned_cols=41 Identities=22% Similarity=0.461 Sum_probs=34.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|||.|.| .|++|..++..|.+++ |++|+++|++.++...+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~ 56 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLL 56 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhh
Confidence 7999999 5999999999999872 499999999877666543
No 322
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.82 E-value=0.21 Score=49.47 Aligned_cols=114 Identities=13% Similarity=0.168 Sum_probs=65.5
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhhhc
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR--INAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~--~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (362)
+++|.|||+|..|.+.++.|.+.+.|++|+++|.++.. .+.+.++ . .+.... +.+ .+.
T Consensus 7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g-~-----------------~~~~g~~~~~-~~~ 67 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPED-V-----------------ELHSGGWNLE-WLL 67 (438)
T ss_pred CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcC-C-----------------EEEeCCCChH-Hhc
Confidence 36799999999999999999887523899999975421 1223221 0 011111 333 367
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HHHhhcCCCCEEEEeeCCccccHHH-HHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VIADVSKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~---------~i~~~l~~~~iVv~~STv~~gt~~~-l~~~l~~~ 144 (362)
++|+||.+..-|.+ . ..+..+.+ ++...+.+..+|-++.|..=.||.. +..+|...
T Consensus 68 ~~d~vV~SpgI~~~--------~---p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~ 133 (438)
T PRK04663 68 EADLVVTNPGIALA--------T---PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAA 133 (438)
T ss_pred cCCEEEECCCCCCC--------C---HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHC
Confidence 89988776443321 1 22332221 2222222456787777776666654 56677654
No 323
>PRK06392 homoserine dehydrogenase; Provisional
Probab=95.81 E-value=0.058 Score=51.16 Aligned_cols=34 Identities=32% Similarity=0.475 Sum_probs=25.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHc------CCCCeEEEE-eCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALK------CPSIEVAVV-DIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~------~~G~~V~~~-d~~ 35 (362)
|||+|+|+|.||..++..|.++ +.+.+|+++ |++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~ 41 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK 41 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC
Confidence 6999999999999999998873 124565543 654
No 324
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.80 E-value=0.052 Score=50.23 Aligned_cols=70 Identities=21% Similarity=0.400 Sum_probs=53.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.++.. |.++.+.+++||
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~--~atVt~chs~---------------------------------t~~l~~~~~~AD 203 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNE--NATVTYCHSK---------------------------------TKNLAELTKQAD 203 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEeCC---------------------------------chhHHHHHHhCC
Confidence 4799999 578999999999988 8999988632 234556689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|.-. . ..+++++++||+-
T Consensus 204 IvI~AvG~p~~i--------------~------~~~ik~gavVIDv 229 (284)
T PRK14190 204 ILIVAVGKPKLI--------------T------ADMVKEGAVVIDV 229 (284)
T ss_pred EEEEecCCCCcC--------------C------HHHcCCCCEEEEe
Confidence 999999866311 1 2346899999863
No 325
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.79 E-value=0.03 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSI 27 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~ 27 (362)
+||+|+| .|++|.-+...|++. +|
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~--~h 32 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR--DF 32 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC--CC
Confidence 6999999 599999999999986 55
No 326
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.78 E-value=0.12 Score=52.23 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|+|+|..|.++|..|.+. |++|+++|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH--GARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4799999999999999999998 99999999754
No 327
>PRK05868 hypothetical protein; Validated
Probab=95.76 E-value=0.0099 Score=57.55 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=32.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|++|.|||.|..|+.+|..|++. |++|+++|+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~--G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH--GYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Confidence 78999999999999999999999 999999998754
No 328
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.75 E-value=0.14 Score=50.77 Aligned_cols=34 Identities=29% Similarity=0.313 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|+|.|..|.+.|..|++. |++|+++|.++.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~--g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN--GAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCC
Confidence 5899999999999999999999 999999997653
No 329
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.74 E-value=0.02 Score=54.74 Aligned_cols=42 Identities=19% Similarity=0.334 Sum_probs=35.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
.||.|||+|.+|+++|..|+.. |. +++++|.|.-....|+..
T Consensus 25 ~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~RQ 67 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA--GVGKVTIVDRDYVEWSNLQRQ 67 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCccCHHHcCcc
Confidence 4799999999999999999999 77 899999986666556543
No 330
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.73 E-value=0.2 Score=49.67 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|+|+|.+|.++|..|++. |++|+++|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~--G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL--GANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence 3789999999999999999999 99999999864
No 331
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.72 E-value=0.066 Score=42.75 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=60.0
Q ss_pred ceEEEEc----CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIG----AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIG----lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
++|+||| -+.+|.-+...|.++ |++|+.++...+.+ .......++++.-.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i------------------------~G~~~y~sl~e~p~ 54 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA--GYEVYPVNPKGGEI------------------------LGIKCYPSLAEIPE 54 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT--T-EEEEESTTCSEE------------------------TTEE-BSSGGGCSS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC--CCEEEEECCCceEE------------------------CcEEeeccccCCCC
Confidence 4799999 789999999999998 99999997653211 23566677776337
Q ss_pred CCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 78 ~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
..|++++++|. ..+.++++++... ..+.+++..+ ...+++.+..++.
T Consensus 55 ~iDlavv~~~~---------------~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~ 101 (116)
T PF13380_consen 55 PIDLAVVCVPP---------------DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREA 101 (116)
T ss_dssp T-SEEEE-S-H---------------HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHT
T ss_pred CCCEEEEEcCH---------------HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHc
Confidence 99999999873 2356667776654 4455665422 2335565655554
No 332
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.72 E-value=0.022 Score=43.85 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=43.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE-- 78 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~-- 78 (362)
.+|+|+|+|..|..++..+.+.. |+. +.++|.+++++-.-- ..+....+.+++.+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~-g~~i~~~~dv~~~~~G~~i--------------------~gipV~~~~~~l~~~~~ 62 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMR-GFGIVAVFDVDPEKIGKEI--------------------GGIPVYGSMDELEEFIE 62 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHH-CECEEEEEEECTTTTTSEE--------------------TTEEEESSHHHHHHHCT
T ss_pred CeEEEECCCCcHHHHHHhHHHHc-CCCCEEEEEcCCCccCcEE--------------------CCEEeeccHHHhhhhhC
Confidence 37999999999998886554432 665 667799987543111 234555555554444
Q ss_pred CcEEEEeccC
Q 017997 79 ADIVFVSVNT 88 (362)
Q Consensus 79 aDvVii~vpt 88 (362)
.|+.++|||.
T Consensus 63 i~iaii~VP~ 72 (96)
T PF02629_consen 63 IDIAIITVPA 72 (96)
T ss_dssp TSEEEEES-H
T ss_pred CCEEEEEcCH
Confidence 9999999984
No 333
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.72 E-value=0.055 Score=50.84 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=31.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
++|.|.| +|++|..++..|+++ ||+|++++++++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r~~~~ 40 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVRDPND 40 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEcCCCc
Confidence 5899999 699999999999999 9999999987654
No 334
>PLN02214 cinnamoyl-CoA reductase
Probab=95.71 E-value=0.044 Score=52.36 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=32.1
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
+|+|.|.|. |++|..++..|+++ |++|++++++.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r~~~~ 46 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER--GYTVKGTVRNPDD 46 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCchh
Confidence 368999997 99999999999999 9999999998654
No 335
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.70 E-value=0.036 Score=52.85 Aligned_cols=68 Identities=18% Similarity=0.384 Sum_probs=41.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCHHhhh
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDVEKHV 76 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~---V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~~~a~ 76 (362)
+||+|||+ |++|.-+...|.++ |.++ +..+..... .|.. +...+ ..+.+. .+..+ +
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h-~~f~v~~l~~~aS~~s------aGk~-~~~~~----------~~l~v~~~~~~~-~ 66 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKE-TKFNIAEVTLLSSKRS------AGKT-VQFKG----------REIIIQEAKINS-F 66 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHC-CCCCcccEEEEECccc------CCCC-eeeCC----------cceEEEeCCHHH-h
Confidence 69999996 99999999999964 3677 555544311 1211 11001 123322 24443 6
Q ss_pred cCCcEEEEeccC
Q 017997 77 SEADIVFVSVNT 88 (362)
Q Consensus 77 ~~aDvVii~vpt 88 (362)
+++|++|.|+|.
T Consensus 67 ~~~Divf~a~~~ 78 (347)
T PRK06728 67 EGVDIAFFSAGG 78 (347)
T ss_pred cCCCEEEECCCh
Confidence 899999999874
No 336
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.70 E-value=0.17 Score=49.90 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
||.|||+|..|.++|..|.+. |++|+++|..+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~--G~~V~~sD~~~ 32 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK--GAEVTVTDLKP 32 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC--CCEEEEEeCCC
Confidence 589999999999999999999 99999999754
No 337
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.69 E-value=0.065 Score=51.53 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=24.8
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCe---EEEEeC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIE---VAVVDI 34 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~---V~~~d~ 34 (362)
||+|+|+|+ |++|.-+...++++ +.++ +..+..
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~-~~f~~~~l~~~ss 37 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEE-NDFDLIEPVFFST 37 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhC-CCCCcCcEEEecc
Confidence 789999996 99999999855544 2666 666544
No 338
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.68 E-value=0.18 Score=49.70 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=35.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-e----------CCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-D----------ISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d----------~~~~~~~~l~~ 44 (362)
++|+|.|.|.+|..+|..|.+. |.+|+++ | +|.+.+.+..+
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~--GakVVavsDs~G~iyn~~GLD~~~L~~~k~ 284 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQL--GAKVVTCSDSSGYVYDEEGIDLEKLKEIKE 284 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEcCCceEECCCCCCHHHHHHHHH
Confidence 5899999999999999999998 9999988 8 77777666554
No 339
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.68 E-value=0.01 Score=55.83 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=47.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|+|.|.| .|++|..++..|++. |++|++++++++....+.+...... .+.+.-.++..++++.+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~------------~~D~~~~~~l~~~~~~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVRPTSDRRNLEGLDVEIV------------EGDLRDPASLRKAVAGCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEecCccccccccCCceEE------------EeeCCCHHHHHHHHhCCC
Confidence 6899998 599999999999999 9999999998665432221100000 011111123445677899
Q ss_pred EEEEecc
Q 017997 81 IVFVSVN 87 (362)
Q Consensus 81 vVii~vp 87 (362)
+||-+..
T Consensus 67 ~vi~~a~ 73 (328)
T TIGR03466 67 ALFHVAA 73 (328)
T ss_pred EEEEece
Confidence 9988764
No 340
>PRK06753 hypothetical protein; Provisional
Probab=95.65 E-value=0.013 Score=56.56 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=32.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|||.|..|+.+|..|+++ |++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 7999999999999999999999 999999998764
No 341
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.63 E-value=0.13 Score=51.18 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=64.7
Q ss_pred eEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe--cCHHhhhcC
Q 017997 3 KICCIGAGYVGGP-TMAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS--TDVEKHVSE 78 (362)
Q Consensus 3 kI~VIGlG~~G~~-lA~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t--~d~~~a~~~ 78 (362)
+|-|||.|..|.+ +|..|.+. |++|+++|.+.. ..+.|.+. .+.+. .+. +.+.+
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~--G~~v~~~D~~~~~~~~~l~~~-------------------gi~~~~g~~~-~~~~~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR--GYQVSGSDIAENATTKRLEAL-------------------GIPIYIGHSA-ENLDD 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC--CCeEEEECCCcchHHHHHHHC-------------------cCEEeCCCCH-HHCCC
Confidence 4789999999998 99999998 999999997653 22233321 12221 122 23677
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHH----------HHHHhhcCCCCEEEEeeCCccccHH-HHHHHHHhc
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAA----------RVIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHN 144 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~----------~~i~~~l~~~~iVv~~STv~~gt~~-~l~~~l~~~ 144 (362)
+|+||++-.-|.+ .| .+..+. +-+...+++..+|.++.|..=.||. .+..+|+..
T Consensus 59 ~d~vV~spgi~~~--------~p---~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 124 (448)
T TIGR01082 59 ADVVVVSAAIKDD--------NP---EIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEA 124 (448)
T ss_pred CCEEEECCCCCCC--------CH---HHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHc
Confidence 9998887433321 12 222221 1122333345678777776555554 456677654
No 342
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.63 E-value=0.03 Score=58.25 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=31.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.||+|||.|..|+..|..|++. ||+|++|++.+.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~ 344 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPE 344 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCC
Confidence 4899999999999999999998 999999998764
No 343
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.62 E-value=0.098 Score=47.50 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=43.4
Q ss_pred CceEEEEcC-ChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 1 MVKICCIGA-GYVGGPTMAVIALKCPSIEV-AVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 1 ~mkI~VIGl-G~~G~~lA~~la~~~~G~~V-~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
||||+|.|+ |.||..+...+... +++++ -++|+.+.... .+ +..++.. ...-....++|+.....+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~~~~L~aa~~~~~~~~~--g~--------d~ge~~g-~~~~gv~v~~~~~~~~~~ 69 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-PDLELVAAFDRPGSLSL--GS--------DAGELAG-LGLLGVPVTDDLLLVKAD 69 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-CCceEEEEEecCCcccc--cc--------chhhhcc-ccccCceeecchhhcccC
Confidence 689999998 99999999888876 35664 45676543210 00 0000000 000123455666666789
Q ss_pred CcEEEEec
Q 017997 79 ADIVFVSV 86 (362)
Q Consensus 79 aDvVii~v 86 (362)
+|++|=-+
T Consensus 70 ~DV~IDFT 77 (266)
T COG0289 70 ADVLIDFT 77 (266)
T ss_pred CCEEEECC
Confidence 99987653
No 344
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=95.61 E-value=0.13 Score=46.57 Aligned_cols=115 Identities=15% Similarity=0.044 Sum_probs=71.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHH---Hhh--hcCCCEEEecC--HH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGV---VKQ--CRGKNLFFSTD--VE 73 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~---~~~--~~~~~l~~t~d--~~ 73 (362)
.+|.|+|+|.+|.+++.+|+.. |. +++++|-+.-....++++...-.+.|.... ... ..+..++...- .-
T Consensus 27 SrVLVVG~GGLGsEVAKnLaLA--GVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eLNP~V~V~~i~~rl 104 (287)
T PTZ00245 27 TSVALHGVAGAAAEAAKNLVLA--GVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRLNPHVSVYDAVTKL 104 (287)
T ss_pred CeEEEECCCchHHHHHHHHHHc--CCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHHCCCcEEEEccccc
Confidence 3799999999999999999999 54 799999887666666654322222221111 111 11222332221 11
Q ss_pred hhhcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH
Q 017997 74 KHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE 135 (362)
Q Consensus 74 ~a~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~ 135 (362)
+.....++++++..+ ++++++.+...++.-++|+..+|..+-|..
T Consensus 105 d~~n~fqvvV~~~~~-----------------le~av~~~~~~~~~~d~~~l~~~~g~~~~~ 149 (287)
T PTZ00245 105 DGSSGTRVTMAAVIT-----------------EEDAVPHVQAALPCADIVALHVTCGPTVLA 149 (287)
T ss_pred CCcCCceEEEEEccc-----------------HHHHHHHhccCCCcccEEEEEEecchhhhh
Confidence 124567788887542 356677777777777788888888765543
No 345
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.60 E-value=0.063 Score=49.72 Aligned_cols=69 Identities=20% Similarity=0.409 Sum_probs=52.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+++.+++||
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~--~aTVtichs~---------------------------------T~~l~~~~~~AD 200 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLRE--DATVTLAHSK---------------------------------TQDLPAVTRRAD 200 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899977531 235566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++.|-- +. ..++++|++||+
T Consensus 201 IvIsAvGkp~~--------------i~------~~~vk~GavVID 225 (287)
T PRK14173 201 VLVVAVGRPHL--------------IT------PEMVRPGAVVVD 225 (287)
T ss_pred EEEEecCCcCc--------------cC------HHHcCCCCEEEE
Confidence 99999986631 11 245689999986
No 346
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.53 E-value=0.11 Score=46.69 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=47.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC---eEEEEeCC----HHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI---EVAVVDIS----VSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEK 74 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~---~V~~~d~~----~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~ 74 (362)
++|.|+|+|.+|..+|..|++. |. +++++|++ .++.+.+... ..++.+...... ...++.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~--G~~~~~i~ivdr~gl~~~~r~~~L~~~--------~~~la~~~~~~~--~~~~l~~ 93 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAA--GAKPENIVVVDSKGVIYEGREDDLNPD--------KNEIAKETNPEK--TGGTLKE 93 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHc--CcCcceEEEEeCCCccccccchhhhHH--------HHHHHHHhccCc--ccCCHHH
Confidence 4899999999999999999988 75 59999998 3433211110 001111100001 1125656
Q ss_pred hhcCCcEEEEecc
Q 017997 75 HVSEADIVFVSVN 87 (362)
Q Consensus 75 a~~~aDvVii~vp 87 (362)
+++++|++|=++|
T Consensus 94 ~l~~~dvlIgaT~ 106 (226)
T cd05311 94 ALKGADVFIGVSR 106 (226)
T ss_pred HHhcCCEEEeCCC
Confidence 7889999999976
No 347
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.52 E-value=0.086 Score=47.51 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=34.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
.+|.|+|+|.+|+.++..|++. |. +++++|.|.-....+++.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~--GVg~i~LvD~D~V~~sNlnRq 54 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS--GVGKLTLIDFDVVCVSNLNRQ 54 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCEECchhhcch
Confidence 4799999999999999999999 54 899999876555555543
No 348
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.50 E-value=0.036 Score=51.67 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=32.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRIN 40 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~ 40 (362)
|+|-|.| .|++|..++..|.+. ||+|.++|+......
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~~~~ 38 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRDGLD 38 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCcccc
Confidence 5699999 599999999999999 999999999765544
No 349
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.48 E-value=0.073 Score=49.20 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=52.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||- ..+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 202 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNE--NATVTIAHSR---------------------------------TKDLPQVAKEAD 202 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999995 67999999999988 8999987531 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++.|-- +. ..++++|++||+
T Consensus 203 IvI~AvG~~~~--------------i~------~~~vk~GavVID 227 (284)
T PRK14170 203 ILVVATGLAKF--------------VK------KDYIKPGAIVID 227 (284)
T ss_pred EEEEecCCcCc--------------cC------HHHcCCCCEEEE
Confidence 99999986531 11 245689999886
No 350
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.47 E-value=0.03 Score=53.51 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=40.4
Q ss_pred eEEEEc-CChhHHHHHHHHHHcCCCCeEE---EEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec-CHHhhhc
Q 017997 3 KICCIG-AGYVGGPTMAVIALKCPSIEVA---VVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST-DVEKHVS 77 (362)
Q Consensus 3 kI~VIG-lG~~G~~lA~~la~~~~G~~V~---~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~-d~~~a~~ 77 (362)
||+|+| .|++|.-+...|+++ +|++. .+.+++..-+.+. ..+ ..+.+.+ +.. .++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~--~hp~~~l~~~as~~~~g~~~~-------~~~----------~~~~~~~~~~~-~~~ 60 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER--NFPIDKLVLLASDRSAGRKVT-------FKG----------KELEVNEAKIE-SFE 60 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC--CCChhhEEEEeccccCCCeee-------eCC----------eeEEEEeCChH-Hhc
Confidence 689999 799999999999987 67643 4434322111111 001 1122222 233 368
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
++|++|+|+|.
T Consensus 61 ~~D~v~~a~g~ 71 (339)
T TIGR01296 61 GIDIALFSAGG 71 (339)
T ss_pred CCCEEEECCCH
Confidence 99999999773
No 351
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.46 E-value=0.02 Score=51.45 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=33.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|+|+|.+|+.+|..|+.. |. +++++|.|.-....+++
T Consensus 22 ~~VlivG~GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~R 63 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA--GVGKLGLVDDDVVELSNLQR 63 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCEEcCccccc
Confidence 4899999999999999999999 55 89999877544444544
No 352
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.45 E-value=0.079 Score=48.98 Aligned_cols=69 Identities=23% Similarity=0.438 Sum_probs=52.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD 201 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNH--DATVTIAHSK---------------------------------TRNLKQLTKEAD 201 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899977531 234566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|-- +. ..++++|++||+
T Consensus 202 IvI~AvG~p~~--------------i~------~~~vk~GavVID 226 (282)
T PRK14169 202 ILVVAVGVPHF--------------IG------ADAVKPGAVVID 226 (282)
T ss_pred EEEEccCCcCc--------------cC------HHHcCCCcEEEE
Confidence 99999986631 11 235689999886
No 353
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.078 Score=49.39 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=52.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.++.+.+++||
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD 203 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAA--NATVTIAHSR---------------------------------TQDLASITREAD 203 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899887431 235566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|.- +. ..++++|++||+
T Consensus 204 IvIsAvGkp~~--------------i~------~~~ik~gavVID 228 (297)
T PRK14186 204 ILVAAAGRPNL--------------IG------AEMVKPGAVVVD 228 (297)
T ss_pred EEEEccCCcCc--------------cC------HHHcCCCCEEEE
Confidence 99999986531 11 245689999886
No 354
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.39 E-value=0.04 Score=47.29 Aligned_cols=68 Identities=24% Similarity=0.507 Sum_probs=44.2
Q ss_pred ceEEEEcCChhHHHHHHH-HHHcCCCCe-EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--
Q 017997 2 VKICCIGAGYVGGPTMAV-IALKCPSIE-VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS-- 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~-la~~~~G~~-V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~-- 77 (362)
.++.|||+|.+|.+++.. +.++. |++ |-++|++++++-.-..+ .++++ -++++.-++
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~-~~~iv~~FDv~~~~VG~~~~~-v~V~~-----------------~d~le~~v~~~ 145 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN-GMKIVAAFDVDPDKVGTKIGD-VPVYD-----------------LDDLEKFVKKN 145 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc-CceEEEEecCCHHHhCcccCC-eeeec-----------------hHHHHHHHHhc
Confidence 489999999999998854 44332 665 55689999976432222 33322 123333333
Q ss_pred CCcEEEEeccC
Q 017997 78 EADIVFVSVNT 88 (362)
Q Consensus 78 ~aDvVii~vpt 88 (362)
+.|+.++|||.
T Consensus 146 dv~iaiLtVPa 156 (211)
T COG2344 146 DVEIAILTVPA 156 (211)
T ss_pred CccEEEEEccH
Confidence 78999999983
No 355
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.39 E-value=0.086 Score=53.51 Aligned_cols=39 Identities=23% Similarity=0.165 Sum_probs=34.5
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
.|.|.|. |.+|..++..|++. |++|++++|+.++.+.+.
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~--G~~Vval~Rn~ekl~~l~ 121 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKL--GFRVRAGVRSAQRAESLV 121 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH
Confidence 5788885 99999999999999 999999999998887654
No 356
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.37 E-value=0.22 Score=44.88 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=35.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|+|.|.|. |.+|..+|..|++. |++|+++++++++++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 78999984 99999999999999 999999999988776654
No 357
>PRK00536 speE spermidine synthase; Provisional
Probab=95.37 E-value=0.44 Score=43.74 Aligned_cols=101 Identities=12% Similarity=0.142 Sum_probs=67.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh-hcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH-VSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a-~~~aD 80 (362)
.||-|||.|--| .++-+.+. ..+|+.+|+|++.++..++-. |.+... ....+++......+. -+.-|
T Consensus 74 k~VLIiGGGDGg--~~REvLkh--~~~v~mVeID~~Vv~~~k~~l-----P~~~~~---~~DpRv~l~~~~~~~~~~~fD 141 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY--DTHVDFVQADEKILDSFISFF-----PHFHEV---KNNKNFTHAKQLLDLDIKKYD 141 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc--CCeeEEEECCHHHHHHHHHHC-----HHHHHh---hcCCCEEEeehhhhccCCcCC
Confidence 589999999988 57888877 359999999999998777521 111111 123455544433332 25789
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCcc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPV 131 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~ 131 (362)
+||+-.. +. .+..+.+.+.|+++-+++..|+.|-
T Consensus 142 VIIvDs~-~~----------------~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 142 LIICLQE-PD----------------IHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred EEEEcCC-CC----------------hHHHHHHHHhcCCCcEEEECCCCcc
Confidence 9998731 11 2345677888999999988777543
No 358
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.33 E-value=0.092 Score=48.56 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=54.0
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.++.. |.|+.+..++||
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~~l~~~~~~AD 204 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEM--NATVTLCHSK---------------------------------TQNLPSIVRQAD 204 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8999988632 234556688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEee
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKS 127 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~S 127 (362)
+||.+++.|-- +. ...+++|++||+-.
T Consensus 205 IvIsAvGk~~~--------------i~------~~~ik~gavVIDvG 231 (284)
T PRK14177 205 IIVGAVGKPEF--------------IK------ADWISEGAVLLDAG 231 (284)
T ss_pred EEEEeCCCcCc--------------cC------HHHcCCCCEEEEec
Confidence 99999986531 11 24578999998744
No 359
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.32 E-value=0.33 Score=48.03 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|+|+|..|.+.+..|++. |++|+++|.++
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~--G~~v~~~D~~~ 39 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLAR--GVTPRVIDTRI 39 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence 699999999999999988888 99999999753
No 360
>PRK12320 hypothetical protein; Provisional
Probab=95.31 E-value=0.094 Score=54.68 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=31.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|||.|.| +|++|..++..|.+. ||+|+++|+++.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~--G~~Vi~ldr~~~ 35 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAA--GHTVSGIAQHPH 35 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEeCChh
Confidence 7999999 699999999999998 999999998754
No 361
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.31 E-value=0.091 Score=48.95 Aligned_cols=70 Identities=27% Similarity=0.327 Sum_probs=53.1
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+|||- ..+|.|+|..|.++ |..|+.+... |.++++.+++||
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~--~ATVtvchs~---------------------------------T~nl~~~~~~AD 212 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKA--DATVTVVHSR---------------------------------TPDPESIVREAD 212 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 47999994 67999999999988 8999988542 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+||.+++.|.- +. .+.+++|++||+.
T Consensus 213 Ivv~AvGk~~~--------------i~------~~~vk~gavVIDv 238 (299)
T PLN02516 213 IVIAAAGQAMM--------------IK------GDWIKPGAAVIDV 238 (299)
T ss_pred EEEEcCCCcCc--------------cC------HHHcCCCCEEEEe
Confidence 99999986531 11 2456899998863
No 362
>PRK08328 hypothetical protein; Provisional
Probab=95.29 E-value=0.057 Score=48.66 Aligned_cols=42 Identities=19% Similarity=0.447 Sum_probs=35.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
.+|.|+|+|.+|+.+|..|+.. |. +++++|.|.-....+++.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~Rq 70 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAA--GVGRILLIDEQTPELSNLNRQ 70 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCccChhhhccc
Confidence 3799999999999999999999 54 799999887666667654
No 363
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.26 E-value=0.41 Score=45.20 Aligned_cols=88 Identities=19% Similarity=0.292 Sum_probs=57.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHc--CCCCCC--CCC-hHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNS--DQLPIY--EPG-LDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~--~~~~~~--e~~-l~~~~~~~~~~~l~~t~d~~~a 75 (362)
-||++||+|.||.-+....++- ||.+|.++ |++.+.....-+ +..... |.. ....-..+..+++..|+|.+..
T Consensus 18 iRVGlIGAG~mG~~ivtQi~~m-~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i 96 (438)
T COG4091 18 IRVGLIGAGEMGTGIVTQIASM-PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI 96 (438)
T ss_pred eEEEEecccccchHHHHHHhhc-CCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence 3899999999999999988865 69998877 777665543322 222211 111 1122222456888899988764
Q ss_pred h--cCCcEEEEeccCCC
Q 017997 76 V--SEADIVFVSVNTPT 90 (362)
Q Consensus 76 ~--~~aDvVii~vptp~ 90 (362)
+ ...|+||-++.-|.
T Consensus 97 ~~~~~IdvIIdATG~p~ 113 (438)
T COG4091 97 IANDLIDVIIDATGVPE 113 (438)
T ss_pred hcCCcceEEEEcCCCcc
Confidence 3 35678888877653
No 364
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.21 E-value=1.4 Score=38.49 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=62.1
Q ss_pred eEEEEcCChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhh---h-
Q 017997 3 KICCIGAGYVGGPTMAVIAL-KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKH---V- 76 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~-~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a---~- 76 (362)
+|.-+|+|. |. ++..+++ .+++.+|+++|++++.++.+++..... ++ ..++.+ ..|..+. .
T Consensus 43 ~vlDlG~Gt-G~-~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~---g~--------~~~v~~~~~d~~~~l~~~~ 109 (198)
T PRK00377 43 MILDIGCGT-GS-VTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF---GV--------LNNIVLIKGEAPEILFTIN 109 (198)
T ss_pred EEEEeCCcC-CH-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh---CC--------CCCeEEEEechhhhHhhcC
Confidence 577889877 42 2222322 122568999999999888665421000 00 012222 2233221 2
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
...|.||+..... .+..+++.+...++++..++. ++....+.+++.+.+++.
T Consensus 110 ~~~D~V~~~~~~~---------------~~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~~~ 161 (198)
T PRK00377 110 EKFDRIFIGGGSE---------------KLKEIISASWEIIKKGGRIVI-DAILLETVNNALSALENI 161 (198)
T ss_pred CCCCEEEECCCcc---------------cHHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHHHc
Confidence 4689999864311 135677778888888776654 333445555666666553
No 365
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.20 E-value=0.11 Score=48.16 Aligned_cols=69 Identities=26% Similarity=0.433 Sum_probs=52.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~ATVt~chs~---------------------------------T~dl~~~~k~AD 203 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD 203 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHhhhcC
Confidence 4799999 578999999999988 8999988632 234555588999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++.|-- +. ...++++++||+
T Consensus 204 IvIsAvGkp~~--------------i~------~~~vk~gavVID 228 (282)
T PRK14180 204 ILIVAVGKPNF--------------IT------ADMVKEGAVVID 228 (282)
T ss_pred EEEEccCCcCc--------------CC------HHHcCCCcEEEE
Confidence 99999986631 11 145688999986
No 366
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.19 E-value=0.1 Score=48.26 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=52.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+++..++||
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 467999999999988 8999987642 234566688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|--. . ...+++|++||+
T Consensus 203 IvIsAvGkp~~i--------------~------~~~vk~GavVID 227 (282)
T PRK14166 203 LIIVAAGCVNLL--------------R------SDMVKEGVIVVD 227 (282)
T ss_pred EEEEcCCCcCcc--------------C------HHHcCCCCEEEE
Confidence 999999866311 1 234689999986
No 367
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.19 E-value=0.26 Score=46.43 Aligned_cols=72 Identities=22% Similarity=0.397 Sum_probs=52.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCC--CCeEEEE-eCCHHHHHHHHcCC-CCCCCCChHHHHhhhcCCCEEEecCHHhhhc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCP--SIEVAVV-DISVSRINAWNSDQ-LPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS 77 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~--G~~V~~~-d~~~~~~~~l~~~~-~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~ 77 (362)
.++||+|+|.|+.-.+..|.-. | +|.|+++ |++.++..++.+.. .| +.++..++++.++
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~s~~~Ivava~~s~~~A~~fAq~~~~~----------------~~k~y~syEeLak 69 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PESNHQIVAVADPSLERAKEFAQRHNIP----------------NPKAYGSYEELAK 69 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cccCcEEEEEecccHHHHHHHHHhcCCC----------------CCccccCHHHHhc
Confidence 3799999999999888887643 3 6876655 88888887766532 11 2455667777665
Q ss_pred --CCcEEEEeccCCC
Q 017997 78 --EADIVFVSVNTPT 90 (362)
Q Consensus 78 --~aDvVii~vptp~ 90 (362)
.+|+|.|..|+|.
T Consensus 70 d~~vDvVyi~~~~~q 84 (351)
T KOG2741|consen 70 DPEVDVVYISTPNPQ 84 (351)
T ss_pred CCCcCEEEeCCCCcc
Confidence 4599999988775
No 368
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.17 E-value=0.021 Score=54.04 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=29.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.+|.|||+|..|+.+|..|+++ |++|+++|+++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA--GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc--ccccccchhccc
Confidence 3799999999999999999999 999999998653
No 369
>PRK07588 hypothetical protein; Provisional
Probab=95.14 E-value=0.022 Score=55.34 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=31.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|||.|..|+++|..|++. |++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCC
Confidence 6899999999999999999999 999999998753
No 370
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.13 E-value=0.077 Score=48.98 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=43.4
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.|+|-+ .+|.|+|..|... |..|+.+..+. .++.+.+++||
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~--~atVtv~hs~t---------------------------------~~L~~~~~~AD 197 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNA--DATVTICHSKT---------------------------------ENLKAELRQAD 197 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhC--CCeeEEEecCh---------------------------------hHHHHHHhhCC
Confidence 479999998 9999999999988 89999987642 23455688999
Q ss_pred EEEEeccCC
Q 017997 81 IVFVSVNTP 89 (362)
Q Consensus 81 vVii~vptp 89 (362)
+||.+++-|
T Consensus 198 IvI~Avgk~ 206 (279)
T PRK14178 198 ILVSAAGKA 206 (279)
T ss_pred EEEECCCcc
Confidence 999999754
No 371
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.12 E-value=0.25 Score=52.92 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=64.5
Q ss_pred eEEEEcCChhHHHH-HHHHHHcCCCCeEEEEeCCHH-HHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 3 KICCIGAGYVGGPT-MAVIALKCPSIEVAVVDISVS-RINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 3 kI~VIGlG~~G~~l-A~~la~~~~G~~V~~~d~~~~-~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
+|.|||+|..|.+. |..|.+. |++|+++|.++. ..+.|.+.... +..-.+. +.+.++|
T Consensus 6 ~i~viG~G~sG~salA~~L~~~--G~~V~~sD~~~~~~~~~L~~~gi~-----------------~~~g~~~-~~~~~~d 65 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDR--GYSVSGSDLSEGKTVEKLKAKGAR-----------------FFLGHQE-EHVPEDA 65 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHC--CCeEEEECCCCChHHHHHHHCCCE-----------------EeCCCCH-HHcCCCC
Confidence 49999999999997 8899998 999999997542 23334331111 1111122 3366789
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHH---------HH-HhhcCCCCEEEEeeCCccccHHH-HHHHHHhc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------VI-ADVSKSDKIVVEKSTVPVKTAEA-IEKILTHN 144 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~---------~i-~~~l~~~~iVv~~STv~~gt~~~-l~~~l~~~ 144 (362)
+||++-.-|.+ .+ .+..+.+ ++ ...++...+|.++.|..=.||.. +..+|...
T Consensus 66 ~vV~SpgI~~~--------~p---~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~ 129 (809)
T PRK14573 66 VVVYSSSISKD--------NV---EYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA 129 (809)
T ss_pred EEEECCCcCCC--------CH---HHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence 98887433321 12 2222221 11 22233336787777776666544 56677653
No 372
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.11 E-value=0.064 Score=52.30 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=32.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~ 39 (362)
|+|.|+|. |++|..++..|.++ |++|++++|++...
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~--G~~V~~l~R~~~~~ 97 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRR--GYNVVAVAREKSGI 97 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEEechhhc
Confidence 68999985 99999999999998 99999999987653
No 373
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.08 E-value=0.12 Score=47.70 Aligned_cols=69 Identities=20% Similarity=0.423 Sum_probs=52.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.++.+.+++||
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~--~AtVt~chs~---------------------------------T~~l~~~~~~AD 203 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNE--NATVTICHSK---------------------------------TKNLKEVCKKAD 203 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899988642 224556678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|.- +. ..++++|.+||+
T Consensus 204 IvIsAvGkp~~--------------i~------~~~ik~gavVID 228 (278)
T PRK14172 204 ILVVAIGRPKF--------------ID------EEYVKEGAIVID 228 (278)
T ss_pred EEEEcCCCcCc--------------cC------HHHcCCCcEEEE
Confidence 99999986631 11 234689999986
No 374
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.08 E-value=0.055 Score=53.92 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=55.9
Q ss_pred ceEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhh----hcC------CCEEEec
Q 017997 2 VKICCIGAGYVGGPTMAVIA-LKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ----CRG------KNLFFST 70 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la-~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~----~~~------~~l~~t~ 70 (362)
.||+|||.|.-|+..|..|+ +. |++|++|++.+.---.++-+..|.. +........ ... +++.+-.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~--g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~v~~~f~~~~~~~~v~f~gnv~VG~ 116 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHE--RVKVDIFEKLPNPYGLIRYGVAPDH-IHVKNTYKTFDPVFLSPNYRFFGNVHVGV 116 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc--CCeEEEEecCCCCccEEEEeCCCCC-ccHHHHHHHHHHHHhhCCeEEEeeeEecC
Confidence 48999999999999999776 55 8999999998765544455544433 333322111 111 2334433
Q ss_pred C--HHhhhcCCcEEEEeccCC
Q 017997 71 D--VEKHVSEADIVFVSVNTP 89 (362)
Q Consensus 71 d--~~~a~~~aDvVii~vptp 89 (362)
| .++..+..|.||+++...
T Consensus 117 Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 117 DLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred ccCHHHHHhcCCEEEEEcCCC
Confidence 3 556557899999998754
No 375
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.08 E-value=0.031 Score=54.45 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=31.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
..|.|||.|.+|+++|..|++..||++|+++|+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 47999999999999999999876789999999874
No 376
>PRK07538 hypothetical protein; Provisional
Probab=95.08 E-value=0.024 Score=55.63 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|+|.|||.|..|+++|..|+++ |++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence 7999999999999999999999 999999998764
No 377
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.07 E-value=0.11 Score=48.02 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=51.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHH--cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIG-AGYVGGPTMAVIAL--KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~--~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
.+++||| .+.+|.|+|..|.+ + +..|+.+... |.++.+.+++
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~--~atVtvchs~---------------------------------T~~l~~~~k~ 203 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSE--NATVTLCHTG---------------------------------TRDLAAHTRR 203 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccC--CCEEEEeCCC---------------------------------CCCHHHHHHh
Confidence 4799999 57899999999988 5 7888887542 2345666899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
||+||.+++-|.- +. ..+++++++||+
T Consensus 204 ADIvV~AvGkp~~--------------i~------~~~ik~GavVID 230 (284)
T PRK14193 204 ADIIVAAAGVAHL--------------VT------ADMVKPGAAVLD 230 (284)
T ss_pred CCEEEEecCCcCc--------------cC------HHHcCCCCEEEE
Confidence 9999999986631 11 245789999886
No 378
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.06 E-value=0.055 Score=55.42 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=29.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.+|.|||.|..|+..|..|++. |++|+++|..
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~ 169 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAG 169 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecC
Confidence 4799999999999999999998 9999999964
No 379
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.04 E-value=0.12 Score=48.13 Aligned_cols=69 Identities=25% Similarity=0.368 Sum_probs=52.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~--~aTVt~chs~---------------------------------T~~l~~~~~~AD 205 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGE--NCTVTTVHSA---------------------------------TRDLADYCSKAD 205 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8999987642 234556688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++.|--. . ..+++++++||+
T Consensus 206 IvVsAvGkp~~i--------------~------~~~ik~gaiVID 230 (294)
T PRK14187 206 ILVAAVGIPNFV--------------K------YSWIKKGAIVID 230 (294)
T ss_pred EEEEccCCcCcc--------------C------HHHcCCCCEEEE
Confidence 999999866311 1 234678999986
No 380
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.02 E-value=0.13 Score=49.16 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=34.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
|+|.|.| .|++|..++..|++. |++|++++++.+..+.+
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~--G~~V~~~~r~~~~~~~~ 50 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQR--GYTVHATLRDPAKSLHL 50 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCChHHHHHH
Confidence 7899998 699999999999999 99999999987765544
No 381
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.00 E-value=0.036 Score=52.41 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=29.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.|.|||.|..|+++|..|++. |++|+++|.+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeec
Confidence 589999999999999999998 9999999986
No 382
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.98 E-value=0.081 Score=52.90 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.+|.|||.|..|+..|..|++. |++|+++|..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~ 174 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARA--GVQVVVFDRHP 174 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCC
Confidence 4799999999999999999998 99999999865
No 383
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.95 E-value=0.032 Score=53.90 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|+|||.|.+|+++|..|++. |++|+++|..+
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCc
Confidence 5899999999999999999999 89999999765
No 384
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.95 E-value=0.13 Score=47.61 Aligned_cols=69 Identities=25% Similarity=0.444 Sum_probs=52.1
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+++||| ...+|.|+|..|.++ |..|+.+... |.++.+.+++||
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~--~ATVtichs~---------------------------------T~~L~~~~~~AD 204 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKE--NCSVTICHSK---------------------------------THNLSSITSKAD 204 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 467999999999988 8899987631 234556688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|.- +. ...+++|.+||+
T Consensus 205 IvV~AvGkp~~--------------i~------~~~vk~GavVID 229 (288)
T PRK14171 205 IVVAAIGSPLK--------------LT------AEYFNPESIVID 229 (288)
T ss_pred EEEEccCCCCc--------------cC------HHHcCCCCEEEE
Confidence 99999986531 11 245689999886
No 385
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.95 E-value=0.042 Score=51.12 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=33.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSD 45 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~ 45 (362)
||.|+|+|.+|..+|..|+.. |. +++++|.+.-....++++
T Consensus 1 kVLIvGaGGLGs~vA~~La~a--GVg~ItlvD~D~Ve~sNL~RQ 42 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW--GVRHITFVDSGKVSYSNPVRQ 42 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCEeccccCCcc
Confidence 689999999999999999999 54 799999765444445443
No 386
>PRK08223 hypothetical protein; Validated
Probab=94.94 E-value=0.064 Score=49.75 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=35.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQ 46 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~ 46 (362)
.+|.|||+|.+|+++|..|+..+- -+++++|-|.-....++++.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D~Ve~SNLnRQ~ 71 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFDVFELRNFNRQA 71 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCCCcchhcccccc
Confidence 379999999999999999999943 27999998866666666543
No 387
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=94.94 E-value=0.13 Score=46.94 Aligned_cols=130 Identities=23% Similarity=0.349 Sum_probs=72.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
.||+|+|+ |.+|.|+...|..+ |.. +..+||+... .-+.....++.... .+ ..+.-...++++++++
T Consensus 29 ~KVAvlGAaGGIGQPLSLLlK~n-p~Vs~LaLYDi~~~--~GVaaDlSHI~T~s---~V-----~g~~g~~~L~~al~~a 97 (345)
T KOG1494|consen 29 LKVAVLGAAGGIGQPLSLLLKLN-PLVSELALYDIANT--PGVAADLSHINTNS---SV-----VGFTGADGLENALKGA 97 (345)
T ss_pred ceEEEEecCCccCccHHHHHhcC-cccceeeeeecccC--CcccccccccCCCC---ce-----eccCChhHHHHHhcCC
Confidence 48999995 89999999877654 322 6788998521 11111111111000 00 0011123567789999
Q ss_pred cEEEEeccCCCCCCCCCCC--CCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHH-HHHHHHHhcc
Q 017997 80 DIVFVSVNTPTKTQGLGAG--KAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNS 145 (362)
Q Consensus 80 DvVii~vptp~~~~g~~~~--~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~-~l~~~l~~~~ 145 (362)
|+|+|+-..|-.. |+-.+ -..+-..+++....+++.++.-.+.++ |.|+.++- ...+.+.+.+
T Consensus 98 dvVvIPAGVPRKP-GMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vI--sNPVNstVPIaaevlKk~G 163 (345)
T KOG1494|consen 98 DVVVIPAGVPRKP-GMTRDDLFNINAGIVKTLAAAIAKCCPNALILVI--SNPVNSTVPIAAEVLKKAG 163 (345)
T ss_pred CEEEecCCCCCCC-CCcHHHhhhcchHHHHHHHHHHHhhCccceeEee--cCcccccchHHHHHHHHcC
Confidence 9999998877543 32211 123335566667777777755444344 34555543 3355666653
No 388
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.93 E-value=0.029 Score=55.65 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=56.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-Ch-HHHHhhhcCCCEEE--------ecC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-GL-DGVVKQCRGKNLFF--------STD 71 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~-~l-~~~~~~~~~~~l~~--------t~d 71 (362)
.+|+|||.|.-|+..|..|++. ||.|++|++.+.-.-.+.-|...+..+ .+ +..++.+...++++ .-+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it 201 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT 201 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC
Confidence 4899999999999999999999 999999998765544444444333222 11 11111111111322 234
Q ss_pred HHhhhcCCcEEEEeccCCC
Q 017997 72 VEKHVSEADIVFVSVNTPT 90 (362)
Q Consensus 72 ~~~a~~~aDvVii~vptp~ 90 (362)
.++..++.|.|++|+++..
T Consensus 202 ~~~L~~e~Dav~l~~G~~~ 220 (457)
T COG0493 202 LEELLKEYDAVFLATGAGK 220 (457)
T ss_pred HHHHHHhhCEEEEeccccC
Confidence 5666678899999988754
No 389
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.92 E-value=0.066 Score=55.89 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=30.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|+|||.|..|++.|..|++. |++|+++|.++
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~ 360 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARN--GVAVTVYDRHP 360 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 4899999999999999999999 99999999864
No 390
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.90 E-value=0.028 Score=55.15 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~ 37 (362)
|||.|||.|.-|+++|..|+++ |+ +|++++++++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence 7999999999999999999998 75 9999998754
No 391
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.90 E-value=0.029 Score=54.52 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=31.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||.|..|+.+|..|++. |++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCcc
Confidence 4899999999999999999999 999999998753
No 392
>PRK07236 hypothetical protein; Provisional
Probab=94.89 E-value=0.031 Score=54.25 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=31.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||.|..|+.+|..|++. |++|+++++.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 40 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPT 40 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 5899999999999999999999 999999998753
No 393
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.88 E-value=0.031 Score=54.36 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=31.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
+++|.|||.|..|+.+|..|++. |++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~--G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA--GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEccC
Confidence 36899999999999999999999 9999999997
No 394
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.88 E-value=0.049 Score=38.99 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=26.2
Q ss_pred EEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 6 CIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 6 VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|||.|.-|+..|..|++. |++|++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCc
Confidence 899999999999999999 99999999863
No 395
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.88 E-value=0.15 Score=47.07 Aligned_cols=69 Identities=17% Similarity=0.339 Sum_probs=51.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ +..|+.+... |.++.+.+++||
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~--~AtVtichs~---------------------------------T~nl~~~~~~AD 202 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLER--HATVTIAHSR---------------------------------TADLAGEVGRAD 202 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999988 8899987531 234556678999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|.- +. ...++++++||+
T Consensus 203 IvI~AvGk~~~--------------i~------~~~ik~gaiVID 227 (282)
T PRK14182 203 ILVAAIGKAEL--------------VK------GAWVKEGAVVID 227 (282)
T ss_pred EEEEecCCcCc--------------cC------HHHcCCCCEEEE
Confidence 99999986531 11 235688999986
No 396
>PRK06153 hypothetical protein; Provisional
Probab=94.87 E-value=0.024 Score=54.53 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=32.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|+|||+|.+|+.++..|++. |. +++++|-|.=....|++
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~--GVgeI~LVD~D~Ve~SNLnR 218 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT--PVREIHLFDGDDFLQHNAFR 218 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc--CCCEEEEECCCEeccccccc
Confidence 4899999999999999999999 54 89999987444334443
No 397
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.86 E-value=0.031 Score=54.04 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=31.1
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|++|.|||.|..|+++|..|++. |++|+++|..
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~--G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK--GIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC--CCeEEEecCC
Confidence 67899999999999999999999 9999999975
No 398
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.85 E-value=0.037 Score=50.36 Aligned_cols=41 Identities=15% Similarity=0.350 Sum_probs=33.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.||+|||+|.+|+.++..|+.. |. +++++|.|.-....+++
T Consensus 33 ~~VliiG~GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~R 74 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAA--GVGTLTLVDFDTVSLSNLQR 74 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCEECcchhhh
Confidence 3899999999999999999999 54 89999987554445544
No 399
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.85 E-value=0.13 Score=40.85 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=47.2
Q ss_pred cCChhHHHHHHHHHHcC--CCCeEEE-EeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhc--CCcEE
Q 017997 8 GAGYVGGPTMAVIALKC--PSIEVAV-VDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVS--EADIV 82 (362)
Q Consensus 8 GlG~~G~~lA~~la~~~--~G~~V~~-~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~--~aDvV 82 (362)
|+|.||..++..|.+.. .+.+|.+ +|++ ..+..- .... .....+++++++.+. +.|+|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~-----------~~~~-----~~~~~~~~~~~~~~~~~~~dvv 63 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD-----------WAAS-----FPDEAFTTDLEELIDDPDIDVV 63 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT-----------HHHH-----HTHSCEESSHHHHHTHTT-SEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh-----------hhhh-----cccccccCCHHHHhcCcCCCEE
Confidence 89999999999998762 1355554 4666 111100 0000 012346788888777 89999
Q ss_pred EEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 83 FVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 83 ii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
|-|.+ . ..+.+-+.+.++.|.-||..|.-
T Consensus 64 VE~t~--~----------------~~~~~~~~~~L~~G~~VVt~nk~ 92 (117)
T PF03447_consen 64 VECTS--S----------------EAVAEYYEKALERGKHVVTANKG 92 (117)
T ss_dssp EE-SS--C----------------HHHHHHHHHHHHTTCEEEES-HH
T ss_pred EECCC--c----------------hHHHHHHHHHHHCCCeEEEECHH
Confidence 99943 2 12233344556677777765553
No 400
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.85 E-value=0.042 Score=59.51 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=30.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.||+|||.|.-|++.|..|++. ||+|++||..+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~ 339 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFH 339 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCC
Confidence 4899999999999999999999 99999999864
No 401
>PLN02583 cinnamoyl-CoA reductase
Probab=94.84 E-value=0.13 Score=48.01 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=29.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|.| .|++|..++..|+++ ||+|++++++.
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~--G~~V~~~~R~~ 40 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSR--GYTVHAAVQKN 40 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEEcCc
Confidence 4688998 599999999999999 99999998853
No 402
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.83 E-value=0.16 Score=47.38 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=34.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCH---HHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISV---SRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~---~~~~~l~~ 44 (362)
.++.|+|+|..+.+++..|+.. | .+|++++|++ ++.+.+.+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~--g~~~i~i~nRt~~~~~ka~~la~ 169 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIE--GLKEIKLFNRRDEFFDKALAFAQ 169 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCccHHHHHHHHHH
Confidence 3689999999999999999987 5 4899999994 57766654
No 403
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.81 E-value=0.051 Score=44.48 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=29.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~ 37 (362)
.||.|+|+|.+|+.+|..|++. |. +++++|.+.=
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~--Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS--GVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH--TTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHh--CCCceeecCCcce
Confidence 4899999999999999999999 76 7999998643
No 404
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.79 E-value=0.15 Score=47.51 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=33.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCH---HHHHHHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISV---SRINAWN 43 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~---~~~~~l~ 43 (362)
++.|+|+|.+|.+++..|++. |.+ |++++|++ ++.+.+.
T Consensus 128 ~vlI~GAGGagrAia~~La~~--G~~~V~I~~R~~~~~~~a~~l~ 170 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALD--GAKEITIFNIKDDFYERAEQTA 170 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCchHHHHHHHHH
Confidence 688999999999999999998 875 99999996 5665544
No 405
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.74 E-value=0.095 Score=46.03 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=33.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.||.|+|+|.+|..++..|+.. |. +++++|.+.-....+++
T Consensus 22 s~VlIiG~gglG~evak~La~~--GVg~i~lvD~d~ve~snL~r 63 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLS--GIGSLTILDDRTVTEEDLGA 63 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc--CCCEEEEEECCcccHhhCCC
Confidence 4799999999999999999999 65 69999987544444443
No 406
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.73 E-value=0.14 Score=48.41 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=52.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|+||| ...+|.|+|..|.++ |..|+.+... |.|+.+.+++||
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~~~AD 259 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRH--DATVSTVHAF---------------------------------TKDPEQITRKAD 259 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 567999999999988 8899887531 234566689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++-|--. . ...+++|++||+
T Consensus 260 IvIsAvGkp~~v--------------~------~d~vk~GavVID 284 (345)
T PLN02897 260 IVIAAAGIPNLV--------------R------GSWLKPGAVVID 284 (345)
T ss_pred EEEEccCCcCcc--------------C------HHHcCCCCEEEE
Confidence 999999866311 1 245689999986
No 407
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.69 E-value=0.59 Score=46.78 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=30.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.||.|+|+|.-|.+.|..|.+. |.+|+++|.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~--g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH--LPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc--CCEEEEEcCCC
Confidence 4799999999999999999999 99999999653
No 408
>PRK06847 hypothetical protein; Provisional
Probab=94.69 E-value=0.035 Score=53.49 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||.|..|+.+|..|++. |++|++++++++
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~--g~~v~v~E~~~~ 38 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRA--GIAVDLVEIDPE 38 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence 5899999999999999999998 999999998753
No 409
>PRK03612 spermidine synthase; Provisional
Probab=94.67 E-value=0.74 Score=46.71 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=65.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHcC--CCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh-
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNSD--QLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~~--~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~- 76 (362)
.+|.+||+|.-+ ++..+++. ++ .+|+++|+|++.++..++. ...+....++ ..++++ ..|..+-+
T Consensus 299 ~rVL~IG~G~G~--~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~-------dprv~vi~~Da~~~l~ 368 (521)
T PRK03612 299 RRVLVLGGGDGL--ALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALD-------DPRVTVVNDDAFNWLR 368 (521)
T ss_pred CeEEEEcCCccH--HHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccC-------CCceEEEEChHHHHHH
Confidence 479999999544 44555555 23 6999999999999987762 1111100000 123332 23433322
Q ss_pred ---cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 77 ---SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 77 ---~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
+..|+|++..|.|... ...--+-.+.++.+.+.++++-+++..+..+
T Consensus 369 ~~~~~fDvIi~D~~~~~~~-------~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 369 KLAEKFDVIIVDLPDPSNP-------ALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred hCCCCCCEEEEeCCCCCCc-------chhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 4689999987655321 0000112457788888999988887655433
No 410
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.66 E-value=0.039 Score=54.05 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=30.9
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|++|.|||.|.+|+..|..|++. |++|++++..+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~--Gl~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR--GVPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccC
Confidence 36799999999999999999999 99999999644
No 411
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.65 E-value=0.13 Score=47.87 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=35.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
.++|+|+|.+|++.+.-....+ --+++++|+|+++.+..++
T Consensus 195 tvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHh
Confidence 6899999999999988776663 3589999999999998775
No 412
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.63 E-value=0.12 Score=48.86 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=49.8
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++.|.|-|.+|..+|.++... |.+|+++++||-+ ++++.+| +++.+ .++|+..+|+
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~--GA~ViVtEvDPI~AleA~MdG--------------------f~V~~-m~~Aa~~gDi 267 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGM--GARVIVTEVDPIRALEAAMDG--------------------FRVMT-MEEAAKTGDI 267 (420)
T ss_pred eEEEecccccchHHHHHhhcC--CCeEEEEecCchHHHHHhhcC--------------------cEEEE-hHHhhhcCCE
Confidence 677889999999999999988 9999999999854 3344332 55443 5667899999
Q ss_pred EEEeccC
Q 017997 82 VFVSVNT 88 (362)
Q Consensus 82 Vii~vpt 88 (362)
+|.|+..
T Consensus 268 fiT~TGn 274 (420)
T COG0499 268 FVTATGN 274 (420)
T ss_pred EEEccCC
Confidence 9999763
No 413
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.62 E-value=0.041 Score=45.53 Aligned_cols=40 Identities=15% Similarity=0.383 Sum_probs=33.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
||.|+|+|.+|..++..|++. |. +++++|.+.-....+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~--Gv~~i~ivD~d~v~~~nl~r 41 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS--GVGKITLIDFDTVELSNLNR 41 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCCCcCcchhhc
Confidence 689999999999999999999 76 79999987655555544
No 414
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.59 E-value=0.091 Score=47.66 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=51.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcC--------C-CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHH---Hhhhc---CCCE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKC--------P-SIEVAVVDISVSRINAWNSDQLPIYEPGLDGV---VKQCR---GKNL 66 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~--------~-G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~---~~~~~---~~~l 66 (362)
.||.|||+|.+|+.++..|++.+ + |.+++++|.|.=....|+++.....+-|..+. .+.+. .-++
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~~i 91 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGTDW 91 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCceE
Confidence 48999999999999999999862 0 33899999876555566655222122232221 11111 1112
Q ss_pred EEec---CHHhhhcCCcEEEEeccC
Q 017997 67 FFST---DVEKHVSEADIVFVSVNT 88 (362)
Q Consensus 67 ~~t~---d~~~a~~~aDvVii~vpt 88 (362)
+... +..+.+.++|+||-|+.+
T Consensus 92 ~a~~~~~~~~~~~~~~DiVi~avDn 116 (244)
T TIGR03736 92 TAHPERVERSSTLHRPDIVIGCVDN 116 (244)
T ss_pred EEEEeeeCchhhhcCCCEEEECCCC
Confidence 2111 112235689999999864
No 415
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.55 E-value=0.33 Score=43.36 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=43.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEec---CHHhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDI--SVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFST---DVEKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~--~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~---d~~~a~ 76 (362)
++|-|||.|.++..=+..|.+. |.+|+++.. +++-.+....+ ++++.. +..+ +
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~--gA~VtVVap~i~~el~~l~~~~-------------------~i~~~~r~~~~~d-l 83 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKK--GCYVYILSKKFSKEFLDLKKYG-------------------NLKLIKGNYDKEF-I 83 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCCCHHHHHHHhCC-------------------CEEEEeCCCChHH-h
Confidence 4799999999999989999998 889999854 44432222222 232211 2233 7
Q ss_pred cCCcEEEEecc
Q 017997 77 SEADIVFVSVN 87 (362)
Q Consensus 77 ~~aDvVii~vp 87 (362)
.++++||.|+.
T Consensus 84 ~g~~LViaATd 94 (223)
T PRK05562 84 KDKHLIVIATD 94 (223)
T ss_pred CCCcEEEECCC
Confidence 89999999964
No 416
>PLN02477 glutamate dehydrogenase
Probab=94.52 E-value=0.45 Score=46.52 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=28.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVA-VVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~-~~d~~ 35 (362)
++|+|.|.|.+|..+|..|.+. |.+|+ +.|.+
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~--GakVVaVsD~~ 239 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEK--GGKIVAVSDIT 239 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCEEEEEECCC
Confidence 5899999999999999999998 89998 55765
No 417
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.46 E-value=0.17 Score=48.24 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=52.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.||| ...+|.|+|..|.++ +..|+.+... |.|+.+.+++||
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~r~AD 276 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQRE--DATVSIVHSR---------------------------------TKNPEEITREAD 276 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHC--CCeEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence 4799999 578999999999998 8899987531 234556689999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+||.+++.|--. . ...+++|++||+
T Consensus 277 IVIsAvGkp~~i--------------~------~d~vK~GAvVID 301 (364)
T PLN02616 277 IIISAVGQPNMV--------------R------GSWIKPGAVVID 301 (364)
T ss_pred EEEEcCCCcCcC--------------C------HHHcCCCCEEEe
Confidence 999999866311 1 245689999886
No 418
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=94.42 E-value=1 Score=35.45 Aligned_cols=95 Identities=19% Similarity=0.193 Sum_probs=57.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEe-cCH----Hhhh
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFS-TDV----EKHV 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t-~d~----~~a~ 76 (362)
++|.-+|+|. |. ++..+++..++.+|+++|.++..++..++..... + ..++++. .|. ....
T Consensus 21 ~~vldlG~G~-G~-~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 21 DVLWDIGAGS-GS-ITIEAARLVPNGRVYAIERNPEALRLIERNARRF---G---------VSNIVIVEGDAPEALEDSL 86 (124)
T ss_pred CEEEEeCCCC-CH-HHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh---C---------CCceEEEeccccccChhhc
Confidence 3678899998 54 4556666544578999999999888765421000 0 0112211 221 1113
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
...|+|+..-+ + ....+.++.+.+.++++..++.
T Consensus 87 ~~~D~v~~~~~-~--------------~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 87 PEPDRVFIGGS-G--------------GLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred CCCCEEEECCc-c--------------hhHHHHHHHHHHHcCCCCEEEE
Confidence 57899988632 1 1235778888899998877654
No 419
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.42 E-value=0.54 Score=42.09 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=34.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|.|+|+ |.+|..++..|+++ |++|+++++++++.+.+.
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~ 46 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE--GARVVVTDRNEEAAERVA 46 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 57899985 99999999999999 999999999987766543
No 420
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.41 E-value=0.64 Score=36.08 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=62.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCH---HhhhcC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDV---EKHVSE 78 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~---~~a~~~ 78 (362)
+|--+|+|.=. ++..+++..++.+|+++|.+++.++..++.. .+.....++++ ..|. .+....
T Consensus 4 ~vLDlGcG~G~--~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~i~~~~~d~~~~~~~~~~ 70 (112)
T PF12847_consen 4 RVLDLGCGTGR--LSIALARLFPGARVVGVDISPEMLEIARERA-----------AEEGLSDRITFVQGDAEFDPDFLEP 70 (112)
T ss_dssp EEEEETTTTSH--HHHHHHHHHTTSEEEEEESSHHHHHHHHHHH-----------HHTTTTTTEEEEESCCHGGTTTSSC
T ss_pred EEEEEcCcCCH--HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-----------HhcCCCCCeEEEECccccCcccCCC
Confidence 67788988744 3344555223899999999999998776531 00001234443 2344 222457
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
.|+|+..- ..... ..+......+++.+.+.++++..+++.
T Consensus 71 ~D~v~~~~-~~~~~-------~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 71 FDLVICSG-FTLHF-------LLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EEEEEECS-GSGGG-------CCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECC-Ccccc-------ccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 89998874 11110 122244577888999999998877664
No 421
>PRK08374 homoserine dehydrogenase; Provisional
Probab=94.30 E-value=0.56 Score=44.79 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.3
Q ss_pred ceEEEEcCChhHHHHHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIAL 22 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~ 22 (362)
++|+|+|+|.||..++..|.+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 689999999999999998876
No 422
>PRK07102 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.1 Score=46.94 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=35.7
Q ss_pred CceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 1 MVKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 1 ~mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
||+|.|.| .|.+|..++..|+++ |++|++.+++++..+.+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~ 41 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA--GARLYLAARDVERLERL 41 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHH
Confidence 67899998 699999999999999 99999999998876654
No 423
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.29 E-value=0.043 Score=53.65 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=31.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||+|..|+.+|..|++. |++|+++++.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 52 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDS--GLRIALIEAQPA 52 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcC--CCEEEEEecCCc
Confidence 4799999999999999999999 999999998754
No 424
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.28 E-value=0.24 Score=46.20 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=32.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV-SRINAWN 43 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~-~~~~~l~ 43 (362)
++|+|+|+|-+|. ||..+|++. |++|+++|++. .+-+.++
T Consensus 183 ~~vgI~GlGGLGh-~aVq~AKAM-G~rV~vis~~~~kkeea~~ 223 (360)
T KOG0023|consen 183 KWVGIVGLGGLGH-MAVQYAKAM-GMRVTVISTSSKKKEEAIK 223 (360)
T ss_pred cEEEEecCcccch-HHHHHHHHh-CcEEEEEeCCchhHHHHHH
Confidence 4799999999885 899999875 99999999987 3444444
No 425
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.27 E-value=0.54 Score=42.27 Aligned_cols=87 Identities=16% Similarity=0.173 Sum_probs=50.7
Q ss_pred EEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh-cCCcEEEEeccCCCCCCCCCCCCCCChHHHH
Q 017997 29 VAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV-SEADIVFVSVNTPTKTQGLGAGKAADLTYWE 107 (362)
Q Consensus 29 V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~-~~aDvVii~vptp~~~~g~~~~~~~d~~~l~ 107 (362)
|.++|+++++.+.+.+.. +....+|+++.+ .+.|+|++|+|+.. ..
T Consensus 5 vaV~D~~~e~a~~~a~~~------------------g~~~~~d~~eLl~~~vDaVviatp~~~---------------H~ 51 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------------------GAKIVSDFDEFLPEDVDIVVEAASQEA---------------VK 51 (229)
T ss_pred EEEECCCHHHHHHHHHHh------------------CCceECCHHHHhcCCCCEEEECCChHH---------------HH
Confidence 567899999988776521 134567788754 58999999987532 12
Q ss_pred HHHHHHHhhcCCCCEEEEeeCCcccc---HHHHHHHHHhccCCCceEEe
Q 017997 108 SAARVIADVSKSDKIVVEKSTVPVKT---AEAIEKILTHNSKGIKFQIL 153 (362)
Q Consensus 108 ~~~~~i~~~l~~~~iVv~~STv~~gt---~~~l~~~l~~~~~g~~~~v~ 153 (362)
+ ...+.++.|.-|+..|.....+ .+++.+..++. |..+++.
T Consensus 52 e---~a~~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~~~--g~~l~i~ 95 (229)
T TIGR03855 52 E---YAEKILKNGKDLLIMSVGALADRELRERLREVARSS--GRKVYIP 95 (229)
T ss_pred H---HHHHHHHCCCCEEEECCcccCCHHHHHHHHHHHHhc--CCEEEEC
Confidence 2 2333445555555556543333 34455555443 3445544
No 426
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.26 E-value=0.25 Score=45.75 Aligned_cols=71 Identities=20% Similarity=0.426 Sum_probs=50.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCP--SIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSE 78 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~--G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~ 78 (362)
.+|.||| ...+|.|+|..|.++++ +..|+.+... |.++.+.+++
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------------------T~~l~~~~~~ 200 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------------------SENLTEILKT 200 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------------------CCCHHHHHhh
Confidence 4799999 46799999999987622 3577765421 2356666899
Q ss_pred CcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 79 aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
||+||.+++.|.- +. ...++++++||+
T Consensus 201 ADIvV~AvG~p~~--------------i~------~~~ik~GavVID 227 (287)
T PRK14181 201 ADIIIAAIGVPLF--------------IK------EEMIAEKAVIVD 227 (287)
T ss_pred CCEEEEccCCcCc--------------cC------HHHcCCCCEEEE
Confidence 9999999987631 11 245789999986
No 427
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.25 E-value=0.1 Score=52.22 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||.|..|+..|..|++. |++|+++|..+.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~--G~~V~vie~~~~ 177 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARA--GHKVTVFERADR 177 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence 5899999999999999999998 999999998643
No 428
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=94.23 E-value=0.054 Score=52.93 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
+|.|||.|..|+++|..|++. |++|+++|+.
T Consensus 6 dV~IvGaG~~Gl~~A~~L~~~--G~~v~viE~~ 36 (405)
T PRK08850 6 DVAIIGGGMVGLALAAALKES--DLRIAVIEGQ 36 (405)
T ss_pred CEEEECccHHHHHHHHHHHhC--CCEEEEEcCC
Confidence 799999999999999999998 9999999985
No 429
>PRK08017 oxidoreductase; Provisional
Probab=94.23 E-value=0.11 Score=46.90 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=35.6
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|.|+ |.+|..++..|++. |++|+++++++++.+.+.+
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRR--GYRVLAACRKPDDVARMNS 44 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHhHHHHh
Confidence 6999998 99999999999999 9999999999988776543
No 430
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=94.23 E-value=0.053 Score=52.17 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=29.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|||.|.+|+++|..|++. |++|+++|++.
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~--g~~V~lie~~~ 36 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARR--GLRVLGLDRFM 36 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEeccc
Confidence 499999999999999999999 99999999864
No 431
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.22 E-value=0.29 Score=49.67 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=36.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++.|+|+|.+|.+++..|++. |.+|++++|+.++.+.+.+
T Consensus 381 ~vlIlGaGGagrAia~~L~~~--G~~V~i~nR~~e~a~~la~ 420 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEK--GARVVIANRTYERAKELAD 420 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 588999999999999999999 8899999999998888764
No 432
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=94.20 E-value=0.65 Score=42.11 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=35.1
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
|+|-|.|. |.+|..+|..|++. |++|++.++++++++.+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK--GARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 78999985 88999999999999 999999999988776543
No 433
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=94.18 E-value=0.21 Score=45.97 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=44.6
Q ss_pred EEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEE
Q 017997 4 ICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIV 82 (362)
Q Consensus 4 I~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvV 82 (362)
|.|.| +|++|..++..|++. |++|++++|+++..+.+... .... +.. ....+++.++|+|
T Consensus 1 vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~-------~~~~---------~~~-~~~~~~~~~~D~V 61 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD--GHEVTILTRSPPAGANTKWE-------GYKP---------WAP-LAESEALEGADAV 61 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc--CCEEEEEeCCCCCCCcccce-------eeec---------ccc-cchhhhcCCCCEE
Confidence 35676 699999999999998 99999999987654322110 0000 000 2223457889999
Q ss_pred EEeccCC
Q 017997 83 FVSVNTP 89 (362)
Q Consensus 83 ii~vptp 89 (362)
|-|...+
T Consensus 62 vh~a~~~ 68 (292)
T TIGR01777 62 INLAGEP 68 (292)
T ss_pred EECCCCC
Confidence 9988653
No 434
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.16 E-value=0.32 Score=45.19 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=37.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPS-IEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G-~~V~~~d~~~~~~~~l~~ 44 (362)
.++.|+|+|-.+.+++..|++. | .++++++|+.++.+++.+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~--g~~~i~V~NRt~~ra~~La~ 168 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEA--GAKRITVVNRTRERAEELAD 168 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHH
Confidence 4699999999999999999999 7 589999999999988875
No 435
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.15 E-value=0.9 Score=45.26 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=28.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.||.|+|+|.-|.+.+..|. . |.+|+++|.+++
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~--g~~v~v~D~~~~ 39 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-N--KYDVIVYDDLKA 39 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-C--CCEEEEECCCCC
Confidence 37999999999999998887 6 899999996543
No 436
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.15 E-value=0.28 Score=48.04 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=28.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
|+|.|+|+|.-|.++|..|. . |++|+++|.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~--G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-K--FGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-C--CCeEEEEcCC
Confidence 78999999999999999998 8 9999999955
No 437
>PLN02650 dihydroflavonol-4-reductase
Probab=94.14 E-value=0.28 Score=46.80 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=33.4
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
++|.|.| .|++|..++..|++. |++|++++++++..+.+
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~--G~~V~~~~r~~~~~~~~ 45 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLER--GYTVRATVRDPANVKKV 45 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHC--CCEEEEEEcCcchhHHH
Confidence 5799998 599999999999999 99999999987655443
No 438
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.14 E-value=0.061 Score=51.85 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDIS 35 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~ 35 (362)
.|.|||.|.+|+++|..|++. |++|+++|..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~--g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH--GKKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence 689999999999999999999 9999999985
No 439
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.13 E-value=0.89 Score=40.59 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=34.2
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+++.|.|. |.+|..++..|+++ |++|++++++++..+.+.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKA--GWDLALVARSQDALEALA 47 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 46788885 99999999999999 999999999987766543
No 440
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.12 E-value=0.23 Score=48.07 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=33.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|||+|.+|..++..|+.. |. +++++|.|.-....|++
T Consensus 42 ~~VliiG~GglG~~v~~~La~~--Gvg~i~ivD~D~ve~sNL~R 83 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASA--GVGTITLIDDDTVDVSNIHR 83 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEeCCEEccccccc
Confidence 3799999999999999999999 64 89999987544444544
No 441
>PLN00198 anthocyanidin reductase; Provisional
Probab=94.11 E-value=0.27 Score=46.67 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=30.9
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSR 38 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~ 38 (362)
|+|.|.| .|++|..++..|++. |++|+++.++.+.
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~--g~~V~~~~r~~~~ 45 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQK--GYAVNTTVRDPEN 45 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHC--CCEEEEEECCCCC
Confidence 6899998 899999999999999 9999988887543
No 442
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.11 E-value=0.12 Score=48.61 Aligned_cols=36 Identities=11% Similarity=0.313 Sum_probs=31.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRI 39 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~ 39 (362)
++|.|.| .|++|..++..|++. |++|++.+++++..
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~--G~~V~~~~r~~~~~ 42 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFR--GYTINATVRDPKDR 42 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHC--CCEEEEEEcCCcch
Confidence 5788998 599999999999999 99999998886543
No 443
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.08 E-value=0.62 Score=44.35 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=32.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|+..+..+.+...+.+|+++|+++++++.+++
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 689999999998766655542114689999999999887654
No 444
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.06 E-value=0.26 Score=45.73 Aligned_cols=54 Identities=26% Similarity=0.478 Sum_probs=42.5
Q ss_pred ceEEEEc-CChhHHHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~----~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
.+|+||| ...+|.|+|..|.+ + +.+|+.+..+. .++.+.+
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~--~AtVt~~hs~t---------------------------------~~l~~~~ 202 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFA--NATVTVCHSRT---------------------------------PDLAEEC 202 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccC--CCEEEEEeCCc---------------------------------hhHHHHH
Confidence 4799999 57899999999998 5 67888877431 2455568
Q ss_pred cCCcEEEEeccCCC
Q 017997 77 SEADIVFVSVNTPT 90 (362)
Q Consensus 77 ~~aDvVii~vptp~ 90 (362)
++||+||.+++.|.
T Consensus 203 ~~ADIVI~AvG~p~ 216 (286)
T PRK14184 203 READFLFVAIGRPR 216 (286)
T ss_pred HhCCEEEEecCCCC
Confidence 89999999998763
No 445
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.03 E-value=0.14 Score=47.44 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=36.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
++.|+|+|..+.+++..|++. |. +|++++|++++.+.+.+
T Consensus 124 ~vlilGaGGaarAi~~aL~~~--g~~~i~i~nR~~~~a~~la~ 164 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA--GFTDGTIVARNEKTGKALAE 164 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHH
Confidence 689999999999999999988 65 69999999999988765
No 446
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=94.01 E-value=0.071 Score=53.14 Aligned_cols=34 Identities=26% Similarity=0.616 Sum_probs=30.6
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|+|||.|++|+++|..|++..||.+|+++|.+.
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 5999999999999999999976689999999763
No 447
>PRK05884 short chain dehydrogenase; Provisional
Probab=93.99 E-value=0.12 Score=45.94 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=36.3
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
||+.|.|. |.+|..++..|++. |++|+++++++++++.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~--g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND--GHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 68999986 89999999999998 9999999999988776643
No 448
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.99 E-value=0.26 Score=44.18 Aligned_cols=103 Identities=22% Similarity=0.250 Sum_probs=58.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcE
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADI 81 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDv 81 (362)
++|.=|||| |+.++..+|+. |.+|++.|.+++-++..+..- .|.++. + .-....+.|+...=...|+
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha---~e~gv~--i----~y~~~~~edl~~~~~~FDv 127 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARL--GASVTGIDASEKPIEVAKLHA---LESGVN--I----DYRQATVEDLASAGGQFDV 127 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHC--CCeeEEecCChHHHHHHHHhh---hhcccc--c----cchhhhHHHHHhcCCCccE
Confidence 356668887 45789999999 999999999998887654210 001110 0 0000011122211136677
Q ss_pred EEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 82 VFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 82 Vii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
|+.. . .-++ -+|. .+.++...+.++|+.+++. ||+-
T Consensus 128 V~cm--E-VlEH------v~dp---~~~~~~c~~lvkP~G~lf~-STin 163 (243)
T COG2227 128 VTCM--E-VLEH------VPDP---ESFLRACAKLVKPGGILFL-STIN 163 (243)
T ss_pred EEEh--h-HHHc------cCCH---HHHHHHHHHHcCCCcEEEE-eccc
Confidence 7654 1 1111 3333 4567788888999987754 6754
No 449
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=93.97 E-value=0.4 Score=44.40 Aligned_cols=84 Identities=23% Similarity=0.217 Sum_probs=59.5
Q ss_pred eEE-EEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 3 KIC-CIGAGYVGGPTMAVIALKCPSIEVAVVDISVSR-INAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 3 kI~-VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~-~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|++ |.|-|-+|-.-|+.|... |.+|++..+||-. +++..+ .++++ ..+++++..|
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~--g~~VivTEiDPI~ALQAaMe--------------------G~~V~-tm~ea~~e~d 271 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGF--GARVIVTEIDPICALQAAME--------------------GYEVT-TLEEAIREVD 271 (434)
T ss_pred cEEEEeccCccchhHHHHHhhc--CcEEEEeccCchHHHHHHhh--------------------ccEee-eHHHhhhcCC
Confidence 444 559999999999999877 8999999998733 333333 24544 4678899999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+++.++... | -+...-...++.++||.+.
T Consensus 272 ifVTtTGc~------------d-----ii~~~H~~~mk~d~IvCN~ 300 (434)
T KOG1370|consen 272 IFVTTTGCK------------D-----IITGEHFDQMKNDAIVCNI 300 (434)
T ss_pred EEEEccCCc------------c-----hhhHHHHHhCcCCcEEecc
Confidence 999996631 1 1334455567888888764
No 450
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.97 E-value=0.059 Score=52.46 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=32.2
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
|.+|.|||+|..|+.+|..|++.++|++|+++|+.++
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 4579999999999999999999844599999998753
No 451
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.96 E-value=0.36 Score=44.90 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=36.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.++.|+|+|-.|.+++..|++. |. ++++++|+.++.+++.+
T Consensus 128 k~vlilGaGGaarAi~~aL~~~--g~~~i~i~nR~~~ka~~La~ 169 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTH--GVQKLQVADLDTSRAQALAD 169 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHC--CCCEEEEEcCCHHHHHHHHH
Confidence 3689999999999999999988 64 79999999999988865
No 452
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.92 E-value=0.22 Score=48.36 Aligned_cols=41 Identities=24% Similarity=0.419 Sum_probs=32.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~ 44 (362)
.+|.|+|+|.+|..++..|+.. |. +++++|.+.-....+++
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~--Gvg~i~lvD~d~v~~sNl~R 177 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAA--GVGTLGIVDHDVVDRSNLQR 177 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCEecchhhcc
Confidence 3799999999999999999999 65 79999988443334443
No 453
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.91 E-value=0.21 Score=45.86 Aligned_cols=69 Identities=26% Similarity=0.420 Sum_probs=52.6
Q ss_pred ceEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAG-YVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG-~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.++.|||-+ .+|-|||..|... ++.|++.... |.|+.+.+++||
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~--naTVtvcHs~---------------------------------T~~l~~~~k~AD 201 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNA--NATVTVCHSR---------------------------------TKDLASITKNAD 201 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhC--CCEEEEEcCC---------------------------------CCCHHHHhhhCC
Confidence 478999965 6899999999998 8999998752 234555688999
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
+++.++.-|.- +. ++.++++.+|++
T Consensus 202 Ivv~AvG~p~~--------------i~------~d~vk~gavVID 226 (283)
T COG0190 202 IVVVAVGKPHF--------------IK------ADMVKPGAVVID 226 (283)
T ss_pred EEEEecCCccc--------------cc------cccccCCCEEEe
Confidence 99999986531 12 356788888875
No 454
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.90 E-value=0.062 Score=52.12 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=30.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|||.|..|+++|..|++. |++|+++|..+
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~--G~~v~l~E~~~ 36 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQ--GRSVAVIEGGE 36 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhC--CCcEEEEcCCC
Confidence 799999999999999999999 99999999753
No 455
>PRK08013 oxidoreductase; Provisional
Probab=93.90 E-value=0.06 Score=52.59 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=31.0
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
+|.|||+|.+|+++|..|++. |++|+++|+.+.
T Consensus 5 dV~IvGaGpaGl~~A~~La~~--G~~v~viE~~~~ 37 (400)
T PRK08013 5 DVVIAGGGMVGLAVACGLQGS--GLRVAVLEQRVP 37 (400)
T ss_pred CEEEECcCHHHHHHHHHHhhC--CCEEEEEeCCCC
Confidence 799999999999999999998 999999998764
No 456
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=93.89 E-value=0.64 Score=46.20 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=58.6
Q ss_pred ceEEEEcC----ChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhh
Q 017997 2 VKICCIGA----GYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKH 75 (362)
Q Consensus 2 mkI~VIGl----G~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a 75 (362)
.+|+|||+ |.+|..+..+|.+. || +|+.++...+.+ ..+.+..+.++.
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~--gf~g~v~~Vnp~~~~i------------------------~G~~~~~sl~~l 61 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG--GYKGKIYPVNPKAGEI------------------------LGVKAYPSVLEI 61 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC--CCCCcEEEECCCCCcc------------------------CCccccCCHHHC
Confidence 47999999 88999999999988 77 566665542211 123444566665
Q ss_pred hcCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCc
Q 017997 76 VSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVP 130 (362)
Q Consensus 76 ~~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~ 130 (362)
-...|++++++|.. .+.+++++..+. .-..+|+++|-++
T Consensus 62 p~~~Dlavi~vp~~---------------~~~~~l~e~~~~-gv~~~vi~s~gf~ 100 (447)
T TIGR02717 62 PDPVDLAVIVVPAK---------------YVPQVVEECGEK-GVKGAVVITAGFK 100 (447)
T ss_pred CCCCCEEEEecCHH---------------HHHHHHHHHHhc-CCCEEEEECCCcc
Confidence 56789999999842 346666666553 4456677666654
No 457
>PRK06182 short chain dehydrogenase; Validated
Probab=93.89 E-value=0.14 Score=47.03 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=35.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|.|.|. |.+|..++..|++. |++|++.++++++++.+.+
T Consensus 4 k~vlItGasggiG~~la~~l~~~--G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQ--GYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence 46888885 99999999999998 9999999999998877654
No 458
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.88 E-value=0.069 Score=53.71 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=30.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|||.|.=|+..|+.||++ |++|.+++++.
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~--G~~V~VlE~~~ 36 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARA--GLKVTVLEKND 36 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhC--CCEEEEEEecC
Confidence 6899999999999999999999 99999999753
No 459
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=93.88 E-value=0.076 Score=51.00 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|||.|.+|+++|..|++. |++|+++|.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~--G~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR--GLSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 589999999999999999998 99999999863
No 460
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.87 E-value=0.33 Score=45.25 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=41.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhh
Q 017997 2 VKICCIG-AGYVGGPTMAVIAL----KCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHV 76 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~----~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~ 76 (362)
.+|+||| ...+|.|+|..|.+ . +..|+....+. .++++.+
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~t---------------------------------~~l~~~~ 204 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSAT---------------------------------KDIPSYT 204 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCCc---------------------------------hhHHHHH
Confidence 4799999 56799999999987 5 67888776431 2345668
Q ss_pred cCCcEEEEeccCC
Q 017997 77 SEADIVFVSVNTP 89 (362)
Q Consensus 77 ~~aDvVii~vptp 89 (362)
++||+||.+++.|
T Consensus 205 ~~ADIvI~Avg~~ 217 (295)
T PRK14174 205 RQADILIAAIGKA 217 (295)
T ss_pred HhCCEEEEecCcc
Confidence 9999999999765
No 461
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.85 E-value=0.42 Score=44.79 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAW 42 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l 42 (362)
++.|+|+|.+|+..+..+... |.+ |+++|+++++++..
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~--G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA--GGSPPAVWETNPRRRDGA 185 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEeCCCHHHHHhh
Confidence 688999999999666544445 665 66789988877654
No 462
>PRK05865 hypothetical protein; Provisional
Probab=93.85 E-value=0.16 Score=54.22 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=30.7
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|||.|.|. |.+|..++..|.++ |++|++++++.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~--G~~Vv~l~R~~ 34 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQ--GHEVVGIARHR 34 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEECCc
Confidence 79999995 99999999999999 99999999874
No 463
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=93.84 E-value=0.065 Score=52.07 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=30.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|||.|..|+++|..|++. |++|+++|+.+
T Consensus 8 dV~IvGaG~aGl~~A~~La~~--G~~v~liE~~~ 39 (392)
T PRK08773 8 DAVIVGGGVVGAACALALADA--GLSVALVEGRE 39 (392)
T ss_pred CEEEECcCHHHHHHHHHHhcC--CCEEEEEeCCC
Confidence 799999999999999999999 99999999864
No 464
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.82 E-value=0.069 Score=55.81 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|.|||.|.+|+++|..|++. |++|+++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~--G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR--GWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 3799999999999999999999 99999999863
No 465
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.81 E-value=0.062 Score=52.47 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=31.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.||.|||.|..|+.+|..|++. |++|+++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~--G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR--GWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 3799999999999999999998 999999998753
No 466
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.80 E-value=0.072 Score=51.89 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=31.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.+|.|||.|..|++.|..|++. |++|+++|+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence 4899999999999999999999 999999998764
No 467
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.76 E-value=1.1 Score=39.91 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=34.2
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAW 42 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l 42 (362)
++|.|.|. |.+|..++..|+++ |++|+++++++++.+.+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~--g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD--GAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCChhHHHHH
Confidence 47999985 99999999999999 99999999998776554
No 468
>PRK07024 short chain dehydrogenase; Provisional
Probab=93.74 E-value=0.95 Score=40.97 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=34.7
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|-|.| .|.+|..++..|+++ |++|+++++++++++.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~--G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQ--GATLGLVARRTDALQAFA 43 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 5777777 799999999999999 999999999988776654
No 469
>PRK07045 putative monooxygenase; Reviewed
Probab=93.74 E-value=0.073 Score=51.65 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=31.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
++|.|||.|..|+..|..|+++ |++|+++++.++
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~--G~~v~v~E~~~~ 39 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR--GHSVTVVERAAR 39 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc--CCcEEEEeCCCc
Confidence 3799999999999999999999 999999998764
No 470
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.72 E-value=0.15 Score=51.12 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=52.7
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCC-C-----hHHHHhhh---cCCCEEEec--
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEP-G-----LDGVVKQC---RGKNLFFST-- 70 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~-~-----l~~~~~~~---~~~~l~~t~-- 70 (362)
.||+|||.|.-|+..|..|++...||+|++||+.+.---.++.+..|-+.. . +..++... ..+++.+..
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~dv 106 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGRDV 106 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECccc
Confidence 479999999999999999987323999999998864333333333222211 0 11111110 011233322
Q ss_pred CHHhhhcCCcEEEEeccCC
Q 017997 71 DVEKHVSEADIVFVSVNTP 89 (362)
Q Consensus 71 d~~~a~~~aDvVii~vptp 89 (362)
+.++.....|.||+++...
T Consensus 107 tl~~L~~~yDaVIlAtGa~ 125 (491)
T PLN02852 107 SLSELRDLYHVVVLAYGAE 125 (491)
T ss_pred cHHHHhhhCCEEEEecCCC
Confidence 3445446799999998864
No 471
>PRK14031 glutamate dehydrogenase; Provisional
Probab=93.67 E-value=1.2 Score=43.89 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=27.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEE-Ee
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAV-VD 33 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~-~d 33 (362)
++|+|.|.|.||...|..|.+. |.+|++ -|
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~--GAkVVaVSD 259 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLEL--GGKVVTMSD 259 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEC
Confidence 5899999999999999999998 999988 57
No 472
>PRK09126 hypothetical protein; Provisional
Probab=93.65 E-value=0.077 Score=51.45 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=30.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
+|.|||.|..|+.+|..|+++ |++|+++|+.+.
T Consensus 5 dviIvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 37 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGS--GLKVTLIERQPL 37 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCc
Confidence 699999999999999999999 999999998653
No 473
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=0.077 Score=52.54 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=31.2
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
|+|+|+|+|.-|++.|..|+++ ||+|++|....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~--g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA--GYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCceEEEeccC
Confidence 7999999999999999999999 99999998764
No 474
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=93.64 E-value=0.59 Score=42.53 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=62.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI-EVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~-~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
.+|.-+|+|. |. ++..+++. |. +|+++|+++..++..++... ..++ ...+.+... + ...|
T Consensus 121 ~~VLDiGcGs-G~-l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~---~~~~--------~~~~~~~~~--~--~~fD 181 (250)
T PRK00517 121 KTVLDVGCGS-GI-LAIAAAKL--GAKKVLAVDIDPQAVEAARENAE---LNGV--------ELNVYLPQG--D--LKAD 181 (250)
T ss_pred CEEEEeCCcH-HH-HHHHHHHc--CCCeEEEEECCHHHHHHHHHHHH---HcCC--------CceEEEccC--C--CCcC
Confidence 3688899998 64 55566666 44 59999999999886654210 0000 011222111 0 1578
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCCccccHHHHHHHHHhc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv~~gt~~~l~~~l~~~ 144 (362)
+|+..... ..+...++++.+.++++..++.. .+.....+.+...+.+.
T Consensus 182 ~Vvani~~---------------~~~~~l~~~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~ 229 (250)
T PRK00517 182 VIVANILA---------------NPLLELAPDLARLLKPGGRLILS-GILEEQADEVLEAYEEA 229 (250)
T ss_pred EEEEcCcH---------------HHHHHHHHHHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHC
Confidence 88754321 23466778888999998887663 33333344555555543
No 475
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.64 E-value=1.2 Score=39.72 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=34.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|.|.|. |.+|..+|..|++. |++|+++++++++.+.+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEA--GATVAFNDGLAAEARELA 48 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 46888885 99999999999999 999999999988776543
No 476
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.61 E-value=0.063 Score=53.09 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=30.6
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++++|||+|.-|++.|++|.+. |++|+++.++.
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~--g~~v~vfEr~~ 39 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLRE--GHEVVVFERTD 39 (448)
T ss_pred CceEEECcchHHHHHHHHHHHC--CCCceEEEecC
Confidence 4799999999999999999999 99999998864
No 477
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.60 E-value=0.1 Score=51.72 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=32.8
Q ss_pred CceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 1 ~mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
||||.|||.|.-|...|..|.+.+++++|+++|.++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 899999999999999999998776679999999874
No 478
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.60 E-value=0.071 Score=51.68 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
+|.|||.|.+|+.+|..|+++ |++|+++|+++
T Consensus 9 dViIVGaG~~Gl~~A~~L~~~--G~~v~liE~~~ 40 (388)
T PRK07494 9 DIAVIGGGPAGLAAAIALARA--GASVALVAPEP 40 (388)
T ss_pred CEEEECcCHHHHHHHHHHhcC--CCeEEEEeCCC
Confidence 599999999999999999998 99999999874
No 479
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.59 E-value=1 Score=41.30 Aligned_cols=41 Identities=10% Similarity=-0.048 Sum_probs=35.5
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHc
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNS 44 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~ 44 (362)
++|.|.|+ |.+|..++..|+++ |++|+++++++++.+.+.+
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~--G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAA--GHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhC--cCEEEEEeCCHHHHHHHHh
Confidence 36888885 99999999999999 9999999999988776654
No 480
>PRK07877 hypothetical protein; Provisional
Probab=93.57 E-value=0.083 Score=55.29 Aligned_cols=83 Identities=14% Similarity=0.314 Sum_probs=51.8
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHcCCCCCCCCChHHH------HhhhcC-CCEEE----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSI--EVAVVDISVSRINAWNSDQLPIYEPGLDGV------VKQCRG-KNLFF---- 68 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~--~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~------~~~~~~-~~l~~---- 68 (362)
.+|+|+|+| +|++.|..|+.. |. +++++|.|.=....||.........|..+. +.++.. -++..
T Consensus 108 ~~V~IvG~G-lGs~~a~~Lara--GvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAE--GLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHc--cCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 379999999 999999999999 63 899999876555566652111122332222 111111 11221
Q ss_pred -e-cCHHhhhcCCcEEEEecc
Q 017997 69 -S-TDVEKHVSEADIVFVSVN 87 (362)
Q Consensus 69 -t-~d~~~a~~~aDvVii~vp 87 (362)
+ .+.++.++++|+||-|+.
T Consensus 185 i~~~n~~~~l~~~DlVvD~~D 205 (722)
T PRK07877 185 LTEDNVDAFLDGLDVVVEECD 205 (722)
T ss_pred CCHHHHHHHhcCCCEEEECCC
Confidence 1 235555789999999965
No 481
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=93.54 E-value=0.075 Score=51.20 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=30.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.|.|||+|..|+.+|..|+++ |++|+++|+++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~--G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS--GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC--CCEEEEEeCCCc
Confidence 389999999999999999999 999999999864
No 482
>PLN02366 spermidine synthase
Probab=93.53 E-value=1.9 Score=40.67 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=65.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|.+||+|.-| ++..+++..+..+|+++|+|++.++..++.-..... +++ ..++++ ..|..+.+
T Consensus 93 krVLiIGgG~G~--~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~-------dpRv~vi~~Da~~~l~~~~ 162 (308)
T PLN02366 93 KKVLVVGGGDGG--VLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV-GFD-------DPRVNLHIGDGVEFLKNAP 162 (308)
T ss_pred CeEEEEcCCccH--HHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc-ccC-------CCceEEEEChHHHHHhhcc
Confidence 479999999854 456667652125899999999988876552111100 111 123433 23422222
Q ss_pred -cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEeeCC
Q 017997 77 -SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTV 129 (362)
Q Consensus 77 -~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~STv 129 (362)
...|+||+-.+.|... ...+ +-.+.++.+.+.|+++-+++..++.
T Consensus 163 ~~~yDvIi~D~~dp~~~-------~~~L-~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGP-------AQEL-FEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred CCCCCEEEEcCCCCCCc-------hhhh-hHHHHHHHHHHhcCCCcEEEECcCC
Confidence 2579999977655321 1111 2356778888999999888765543
No 483
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=93.53 E-value=1.1 Score=39.94 Aligned_cols=38 Identities=29% Similarity=0.241 Sum_probs=33.2
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINA 41 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~ 41 (362)
++|.|.| .|.+|..++..|+++ |++|++++|++++.+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~ 45 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAAD--GAEVIVVDICGDDAAA 45 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHH
Confidence 4788998 699999999999999 9999999999766544
No 484
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.83 Score=41.30 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=34.8
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+++.|.| .|.+|..++..|+++ |++|++++++++..+.+.
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~ 52 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEA--GARVHVCDVSEAALAATA 52 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 4788998 499999999999999 999999999987766554
No 485
>PLN02823 spermine synthase
Probab=93.47 E-value=3.2 Score=39.58 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=63.1
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|.|||+|.-+ ++..+.+..+..+|+++|+|++.++..++- .+.....++ ..+++. ..|...-+
T Consensus 105 k~VLiiGgG~G~--~~re~l~~~~~~~v~~VEiD~~vv~lar~~-~~~~~~~~~-------dprv~v~~~Da~~~L~~~~ 174 (336)
T PLN02823 105 KTVFIMGGGEGS--TAREVLRHKTVEKVVMCDIDQEVVDFCRKH-LTVNREAFC-------DKRLELIINDARAELEKRD 174 (336)
T ss_pred CEEEEECCCchH--HHHHHHhCCCCCeEEEEECCHHHHHHHHHh-ccccccccc-------CCceEEEEChhHHHHhhCC
Confidence 479999999544 455555542245899999999999877653 221111111 123332 22322222
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHH-HHHhhcCCCCEEEEeeC
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR-VIADVSKSDKIVVEKST 128 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~-~i~~~l~~~~iVv~~ST 128 (362)
+..|+||+-++.|... + .+.-=+-.+.++ .+.+.|+++.+++..+.
T Consensus 175 ~~yDvIi~D~~dp~~~-~-----~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 175 EKFDVIIGDLADPVEG-G-----PCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred CCccEEEecCCCcccc-C-----cchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 4689999987665421 0 110001245566 67788999888765443
No 486
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.43 E-value=0.87 Score=41.99 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=32.5
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIE-VAVVDISVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~-V~~~d~~~~~~~~l~~ 44 (362)
+|.|+|+|.+|...+..+... |.+ |+++|+++++.+.+++
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALS 163 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 688999999998777666555 776 8999999998887665
No 487
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.42 E-value=1.1 Score=40.39 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=33.9
Q ss_pred eEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 3 KICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 3 kI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+|.|.|. |.+|..++..|++. |++|+++++++++.+.+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~--g~~v~~~~r~~~~~~~~~ 43 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAA--GDRVLALDIDAAALAAFA 43 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 4778886 89999999999998 999999999988776554
No 488
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=93.42 E-value=1.4 Score=39.53 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=34.6
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|.|.| .|.+|..++..|++. |++|++++++++..+.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~ 42 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAA--GANVVVNDLGEAGAEAAA 42 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 5688888 699999999999999 999999999987766554
No 489
>PRK09242 tropinone reductase; Provisional
Probab=93.41 E-value=1.1 Score=40.39 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=33.9
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
+++.|.|. |.+|..++..|++. |++|++.+++++..+++.
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~ 50 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGL--GADVLIVARDADALAQAR 50 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 35777774 89999999999999 999999999988776554
No 490
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.38 E-value=1.1 Score=42.87 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=31.9
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC---CHHHHHHHHc
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDI---SVSRINAWNS 44 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~---~~~~~~~l~~ 44 (362)
+|.|+|+|.+|...+..+... |.+|+++++ ++++.+.+++
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHH
Confidence 689999999999776655555 889999998 6788776654
No 491
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.38 E-value=1.3 Score=41.30 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=34.6
Q ss_pred ceEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 017997 2 VKICCIGA-GYVGGPTMAVIALKCPSIEVAVVDISVSRINAWN 43 (362)
Q Consensus 2 mkI~VIGl-G~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~ 43 (362)
++|-|.|. |.+|..+|..|+++ |++|++.++++++.+.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~--G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR--GATVVAVARREDLLDAVA 81 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 35778885 99999999999999 999999999988776654
No 492
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=93.35 E-value=0.29 Score=46.05 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=47.3
Q ss_pred ceEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCC-CCCCCChHHHHhhhcCCCEEEecCHHhhhcCC
Q 017997 2 VKICCIG-AGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQL-PIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEA 79 (362)
Q Consensus 2 mkI~VIG-lG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~-~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~a 79 (362)
++|.|.| .|++|..++..|++. |++|++..++.+..+.+.+-.. .-..+.+. . ..+.+.-..+..++++++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~----~~~Dl~~~~~~~~~~~~~ 78 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLR--GYTVKATVRDLTDRKKTEHLLALDGAKERLK-L----FKADLLEESSFEQAIEGC 78 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCCcchHHHHHHHhccCCCCceE-E----EecCCCCcchHHHHHhCC
Confidence 5899998 699999999999999 9999988877654332221000 00000000 0 011222223355667789
Q ss_pred cEEEEecc
Q 017997 80 DIVFVSVN 87 (362)
Q Consensus 80 DvVii~vp 87 (362)
|+||-+..
T Consensus 79 d~vih~A~ 86 (322)
T PLN02986 79 DAVFHTAS 86 (322)
T ss_pred CEEEEeCC
Confidence 99988764
No 493
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.34 E-value=0.077 Score=51.78 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
.|.|||.|..|+++|..|++. |++|+++|+.+
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGS--GLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcC--CCEEEEEcCCC
Confidence 699999999999999999998 99999999875
No 494
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=93.33 E-value=0.083 Score=53.64 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=27.9
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.||+|||+|.-|++.+..|.+. |++|++++++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~--g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE--GLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT--T-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCeEEecCCC
Confidence 5899999999999999999999 999999998754
No 495
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=3.2 Score=37.11 Aligned_cols=189 Identities=17% Similarity=0.170 Sum_probs=90.0
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCc
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVV-DISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEAD 80 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~-d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aD 80 (362)
|.+++||.|..|......-.+. ++....+ -+++++.+.|.+-. . ...+. .+...+-.+
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~--~~~cs~i~srS~~~a~~LaE~~------~---------a~p~d----~~~~ael~~ 69 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV--VVACSAISSRSRDRAQNLAETY------V---------APPLD----VAKSAELLL 69 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch--heeehhhhhcCHHHHhhchhcc------C---------CCccc----hhhChhhhc
Confidence 5799999999998744333322 3333322 34555555543310 0 01121 222234457
Q ss_pred EEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHh-hcCCCCEEEEeeCCccccHHHHHHHHHhccCCCceEEeeCCccc
Q 017997 81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL 159 (362)
Q Consensus 81 vVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~-~l~~~~iVv~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~ 159 (362)
++|+.+|.. + ..+..+. ..+++++|+-+|... ..+.+.+ +.+. | -+....+|.|.
T Consensus 70 ~vfv~vpd~----------------~--~s~vaa~~~~rpg~iv~HcSga~--~~~il~~-~gr~--g-~~~asiHP~f~ 125 (289)
T COG5495 70 LVFVDVPDA----------------L--YSGVAATSLNRPGTIVAHCSGAN--GSGILAP-LGRQ--G-CIPASIHPAFS 125 (289)
T ss_pred eEEecchHH----------------H--HHHHHHhcccCCCeEEEEccCCC--chhhhhh-hhhc--C-Ccceeeccccc
Confidence 788777621 1 1112222 246888888887632 1122222 2222 2 12345677666
Q ss_pred ccCccccccC-CCCeEEEecCCCcchHHHHHHHHHHHhccCCCCcEEeC-Chh--HHHHHHHHHhHHHHHHHHHHHHHHH
Q 017997 160 AEGTAIQDLF-NPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTT-NLW--SAELSKLAANAFLAQRISSVNAMSA 235 (362)
Q Consensus 160 ~~g~a~~~~~-~~~~viiG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~--~ae~~Kl~~N~~~~~~ia~~nE~~~ 235 (362)
-.|... ++. -.+.+ +|.... ++.-...++.+-..++ +.++.+. +.+ ---..-++.|- .+..+.+...
T Consensus 126 Fsgl~e-dl~rl~d~~-~~i~ea--D~~g~ai~q~la~emg-g~~f~V~~~~r~lYHaaa~~asnf----~v~~l~~a~~ 196 (289)
T COG5495 126 FSGLDE-DLSRLKDTI-FGITEA--DDVGYAIVQSLALEMG-GEPFCVREEARILYHAAAVHASNF----IVTVLADALE 196 (289)
T ss_pred ccCCHH-HHHhCcccE-EEeecc--cccccHHHHHHHHHhC-CCceeechhHHHHHHHHHHHhhcc----HHHHHHHHHH
Confidence 555432 222 22233 343211 2344566677777776 3444433 111 11112233333 3466677777
Q ss_pred HHHHhCCCH
Q 017997 236 LCEATGANV 244 (362)
Q Consensus 236 l~~~~g~d~ 244 (362)
+....|.|-
T Consensus 197 i~~aag~Dq 205 (289)
T COG5495 197 IYRAAGDDQ 205 (289)
T ss_pred HHHHhcCCC
Confidence 777777763
No 496
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.28 E-value=0.087 Score=52.58 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=30.4
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISV 36 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~ 36 (362)
++|+|||+|.-|+..|..|.+. |++|++++++.
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~--G~~v~vfE~~~ 43 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRRE--GHTVVVFEREK 43 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhc--CCeEEEEecCC
Confidence 5899999999999999999999 99999999764
No 497
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=93.27 E-value=0.095 Score=51.55 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=30.3
Q ss_pred eEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 3 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 3 kI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
+|.|||.|.+|+..|..|++. |++|++++..+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~--G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA--GVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC--CCcEEEEecccc
Confidence 799999999999999999999 999999996544
No 498
>PRK04457 spermidine synthase; Provisional
Probab=93.27 E-value=2.9 Score=38.35 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=61.3
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEE-ecCHHhhh----
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFF-STDVEKHV---- 76 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~-t~d~~~a~---- 76 (362)
.+|.+||+|. +.++..+++..|+.+|+++|+|++.++..++.- ..++. ..++++ ..|..+.+
T Consensus 68 ~~vL~IG~G~--G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f---~~~~~--------~~rv~v~~~Da~~~l~~~~ 134 (262)
T PRK04457 68 QHILQIGLGG--GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF---ELPEN--------GERFEVIEADGAEYIAVHR 134 (262)
T ss_pred CEEEEECCCH--hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc---CCCCC--------CCceEEEECCHHHHHHhCC
Confidence 3689999994 447777776656789999999999998776521 00110 123332 24443322
Q ss_pred cCCcEEEEeccCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEE
Q 017997 77 SEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVE 125 (362)
Q Consensus 77 ~~aDvVii~vptp~~~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~ 125 (362)
...|+|++-.-.+.. .+.--...+.++.+.+.|+++-+++.
T Consensus 135 ~~yD~I~~D~~~~~~--------~~~~l~t~efl~~~~~~L~pgGvlvi 175 (262)
T PRK04457 135 HSTDVILVDGFDGEG--------IIDALCTQPFFDDCRNALSSDGIFVV 175 (262)
T ss_pred CCCCEEEEeCCCCCC--------CccccCcHHHHHHHHHhcCCCcEEEE
Confidence 357999885421110 11111125677888888888777644
No 499
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=93.26 E-value=0.32 Score=38.06 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHcCCCCCCCCChHHHHhhhcCCCEEEecCHHhhhcCCcEEEEeccCCCC
Q 017997 12 VGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTK 91 (362)
Q Consensus 12 ~G~~lA~~la~~~~G~~V~~~d~~~~~~~~l~~~~~~~~e~~l~~~~~~~~~~~l~~t~d~~~a~~~aDvVii~vptp~~ 91 (362)
-+..++..|.+. |.+|.+||..-........+. ..+++.++++.++++++|+||++++-+.=
T Consensus 18 p~~~l~~~L~~~--g~~V~~~DP~v~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~D~vvl~t~h~~f 79 (106)
T PF03720_consen 18 PALELIEELKER--GAEVSVYDPYVDEEEIKELGK----------------LEGVEVCDDLEEALKGADAVVLATDHDEF 79 (106)
T ss_dssp HHHHHHHHHHHT--T-EEEEE-TTSHHHHHHHHCH----------------HHCEEEESSHHHHHTTESEEEESS--GGG
T ss_pred HHHHHHHHHHHC--CCEEEEECCccChHHHHhhCC----------------ccceEEecCHHHHhcCCCEEEEEecCHHH
Confidence 356788899998 999999998644433322110 02478888998899999999999763311
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhcCCCCEEEEe
Q 017997 92 TQGLGAGKAADLTYWESAARVIADVSKSDKIVVEK 126 (362)
Q Consensus 92 ~~g~~~~~~~d~~~l~~~~~~i~~~l~~~~iVv~~ 126 (362)
+.. -.+.+...++++.+|++.
T Consensus 80 -------~~l-------~~~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 80 -------REL-------DWEEIAKLMRKPPVIIDG 100 (106)
T ss_dssp -------GCC-------GHHHHHHHSCSSEEEEES
T ss_pred -------hcc-------CHHHHHHhcCCCCEEEEC
Confidence 111 234566666677777763
No 500
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=93.25 E-value=0.1 Score=50.83 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.5
Q ss_pred ceEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 017997 2 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVS 37 (362)
Q Consensus 2 mkI~VIGlG~~G~~lA~~la~~~~G~~V~~~d~~~~ 37 (362)
.+|.|||.|..|+.+|..|++. |++|+++|+.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~--G~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLA--GIDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 4799999999999999999999 999999998863
Done!