Query 017999
Match_columns 362
No_of_seqs 30 out of 32
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 05:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00505 Glyco_transf_8 Members 99.3 3.8E-11 8.2E-16 108.1 12.8 190 106-329 17-242 (246)
2 cd02537 GT8_Glycogenin Glycoge 99.2 1.2E-10 2.6E-15 105.6 13.4 188 104-329 15-210 (240)
3 cd04194 GT8_A4GalT_like A4GalT 99.1 2.6E-10 5.6E-15 101.9 10.4 206 87-329 3-244 (248)
4 PF01501 Glyco_transf_8: Glyco 99.1 1.9E-11 4.2E-16 104.8 1.1 138 161-329 85-244 (250)
5 cd06431 GT8_LARGE_C LARGE cata 98.8 7.6E-08 1.6E-12 91.0 14.3 210 105-340 16-268 (280)
6 PF03407 Nucleotid_trans: Nucl 98.8 5.6E-08 1.2E-12 85.1 9.9 116 151-301 50-172 (212)
7 cd06429 GT8_like_1 GT8_like_1 98.7 3.5E-07 7.6E-12 85.8 14.3 191 103-330 12-239 (257)
8 cd06914 GT8_GNT1 GNT1 is a fun 98.6 6.2E-07 1.4E-11 85.8 14.1 187 107-327 18-232 (278)
9 cd06430 GT8_like_2 GT8_like_2 98.6 8.5E-07 1.8E-11 86.1 14.3 175 118-329 29-257 (304)
10 PRK15171 lipopolysaccharide 1, 98.5 5.1E-07 1.1E-11 87.1 9.8 197 102-330 37-269 (334)
11 PLN00176 galactinol synthase 98.5 2.8E-06 6.1E-11 83.3 13.9 209 87-343 25-295 (333)
12 PLN02769 Probable galacturonos 98.1 8.9E-06 1.9E-10 85.7 9.5 158 158-351 438-627 (629)
13 cd06432 GT8_HUGT1_C_like The C 98.0 3.9E-05 8.4E-10 71.3 10.2 168 106-304 17-220 (248)
14 PLN02718 Probable galacturonos 97.9 7.9E-05 1.7E-09 78.5 11.5 243 64-352 268-601 (603)
15 COG1442 RfaJ Lipopolysaccharid 97.8 0.00011 2.4E-09 72.1 9.6 190 107-339 19-252 (325)
16 PLN02523 galacturonosyltransfe 97.8 0.0004 8.7E-09 72.8 13.7 154 162-351 364-556 (559)
17 PLN02870 Probable galacturonos 97.7 0.00011 2.3E-09 76.6 7.8 150 177-353 342-531 (533)
18 PLN02659 Probable galacturonos 97.7 0.00013 2.8E-09 76.1 8.3 150 177-353 343-532 (534)
19 PLN02867 Probable galacturonos 97.6 0.00034 7.5E-09 73.0 9.3 157 159-353 329-534 (535)
20 PLN02910 polygalacturonate 4-a 97.5 0.00035 7.5E-09 74.2 8.4 147 178-352 475-655 (657)
21 PLN02829 Probable galacturonos 97.3 0.00055 1.2E-08 72.7 7.6 50 177-226 456-529 (639)
22 PF05637 Glyco_transf_34: gala 97.1 0.00038 8.3E-09 64.7 3.3 92 216-329 143-234 (239)
23 PLN02742 Probable galacturonos 96.8 0.0026 5.5E-08 66.7 7.0 142 178-351 353-532 (534)
24 PF03414 Glyco_transf_6: Glyco 92.4 0.99 2.1E-05 45.5 9.9 211 86-329 97-330 (337)
25 cd02515 Glyco_transf_6 Glycosy 92.1 1.5 3.2E-05 43.2 10.4 210 88-329 34-265 (271)
26 PF05704 Caps_synth: Capsular 87.0 1.9 4.1E-05 41.4 6.7 121 98-247 56-187 (276)
27 PF03314 DUF273: Protein of un 79.2 5.8 0.00013 38.3 6.5 100 150-267 25-125 (222)
28 cd01833 XynB_like SGNH_hydrola 74.1 23 0.00049 29.2 7.9 73 98-192 59-131 (157)
29 PF13641 Glyco_tranf_2_3: Glyc 70.3 15 0.00033 31.5 6.3 89 89-193 4-102 (228)
30 cd02510 pp-GalNAc-T pp-GalNAc- 58.7 48 0.001 30.6 7.6 75 103-193 12-99 (299)
31 PF04488 Gly_transf_sug: Glyco 58.6 9.9 0.00021 30.6 2.8 23 107-129 6-28 (103)
32 COG5603 TRS20 Subunit of TRAPP 56.2 18 0.0004 32.5 4.3 36 216-252 75-110 (136)
33 PLN03181 glycosyltransferase; 56.0 23 0.00051 37.4 5.6 96 163-268 188-306 (453)
34 cd02520 Glucosylceramide_synth 52.9 85 0.0018 26.9 7.7 104 106-226 17-132 (196)
35 PF00535 Glycos_transf_2: Glyc 51.2 1.1E+02 0.0025 23.7 8.1 80 105-200 13-102 (169)
36 cd04179 DPM_DPG-synthase_like 51.1 1E+02 0.0022 25.2 7.7 21 179-199 81-102 (185)
37 cd04186 GT_2_like_c Subfamily 50.3 97 0.0021 24.5 7.2 100 104-226 11-120 (166)
38 cd02526 GT2_RfbF_like RfbF is 48.6 84 0.0018 27.0 7.1 78 104-197 12-96 (237)
39 cd06439 CESA_like_1 CESA_like_ 48.2 69 0.0015 28.0 6.6 80 105-200 44-133 (251)
40 TIGR01618 phage_P_loop phage n 47.3 51 0.0011 31.1 6.0 66 115-200 31-96 (220)
41 PRK15382 non-LEE encoded effec 46.3 24 0.00052 35.4 3.8 45 179-226 212-257 (326)
42 cd04192 GT_2_like_e Subfamily 46.0 97 0.0021 26.2 6.9 16 178-193 83-98 (229)
43 PRK15383 type III secretion sy 45.8 24 0.00052 35.4 3.7 45 179-226 220-265 (335)
44 cd01841 NnaC_like NnaC (CMP-Ne 45.4 74 0.0016 26.6 6.1 75 97-193 69-143 (174)
45 PRK11204 N-glycosyltransferase 43.9 83 0.0018 30.6 7.0 73 105-193 69-150 (420)
46 PRK15384 type III secretion sy 42.9 27 0.00059 35.0 3.6 45 179-226 217-262 (336)
47 cd06182 CYPOR_like NADPH cytoc 42.6 2.1E+02 0.0045 27.0 9.2 27 185-211 160-186 (267)
48 cd00761 Glyco_tranf_GTA_type G 42.6 1E+02 0.0022 23.1 5.9 72 108-195 15-95 (156)
49 cd01836 FeeA_FeeB_like SGNH_hy 42.5 1.3E+02 0.0029 25.5 7.3 27 99-125 87-113 (191)
50 KOG3738 Predicted polypeptide 40.6 65 0.0014 34.5 6.0 127 77-211 112-269 (559)
51 cd01844 SGNH_hydrolase_like_6 40.3 1.7E+02 0.0036 25.0 7.6 29 101-129 76-104 (177)
52 cd01820 PAF_acetylesterase_lik 39.2 1.5E+02 0.0032 26.2 7.3 72 98-193 108-179 (214)
53 PF04765 DUF616: Protein of un 38.9 48 0.001 33.2 4.6 82 117-208 90-186 (305)
54 KOG1928 Alpha-1,4-N-acetylgluc 38.6 34 0.00073 35.8 3.6 126 109-250 150-298 (409)
55 PLN03182 xyloglucan 6-xylosylt 38.5 97 0.0021 32.8 6.8 98 161-268 185-305 (429)
56 cd01834 SGNH_hydrolase_like_2 38.3 1.8E+02 0.0038 24.2 7.3 75 98-191 84-158 (191)
57 PF13704 Glyco_tranf_2_4: Glyc 38.0 1.9E+02 0.004 22.3 6.9 78 103-193 5-87 (97)
58 cd04187 DPM1_like_bac Bacteria 37.4 2.2E+02 0.0048 23.6 7.7 79 104-199 15-103 (181)
59 PF13358 DDE_3: DDE superfamil 37.2 41 0.0009 26.6 3.2 59 108-170 68-136 (146)
60 PRK13889 conjugal transfer rel 37.1 92 0.002 35.8 7.0 86 139-247 88-173 (988)
61 cd04190 Chitin_synth_C C-termi 37.1 97 0.0021 28.0 5.9 16 178-193 74-89 (244)
62 TIGR03472 HpnI hopanoid biosyn 36.8 1.1E+02 0.0024 29.7 6.7 17 177-193 126-142 (373)
63 TIGR02193 heptsyl_trn_I lipopo 36.3 89 0.0019 29.1 5.7 43 103-145 14-58 (319)
64 TIGR03111 glyc2_xrt_Gpos1 puta 35.3 2.2E+02 0.0048 28.6 8.7 22 289-310 252-273 (439)
65 PRK13826 Dtr system oriT relax 35.0 1.3E+02 0.0028 35.1 7.7 54 138-211 97-150 (1102)
66 PF13774 Longin: Regulated-SNA 34.6 37 0.0008 26.3 2.5 32 219-250 31-64 (83)
67 TIGR00282 metallophosphoestera 33.9 64 0.0014 31.4 4.5 40 59-99 30-74 (266)
68 PF10465 Inhibitor_I24: PinA p 33.9 32 0.00069 31.2 2.3 18 150-168 122-139 (140)
69 cd06435 CESA_NdvC_like NdvC_li 33.4 2E+02 0.0044 24.9 7.1 28 105-132 14-42 (236)
70 cd04184 GT2_RfbC_Mx_like Myxoc 33.2 1.6E+02 0.0035 24.6 6.3 17 288-304 185-201 (202)
71 cd06438 EpsO_like EpsO protein 31.3 2.1E+02 0.0045 24.1 6.7 18 177-194 81-98 (183)
72 PF11051 Mannosyl_trans3: Mann 31.3 44 0.00096 31.7 2.9 36 177-226 90-125 (271)
73 PRK14583 hmsR N-glycosyltransf 31.0 1.4E+02 0.0031 29.8 6.5 68 110-193 96-171 (444)
74 PF08331 DUF1730: Domain of un 30.6 1.8E+02 0.0039 22.9 5.8 65 113-186 5-78 (78)
75 PLN03180 reversibly glycosylat 30.5 12 0.00026 38.2 -1.0 48 181-230 97-153 (346)
76 cd06423 CESA_like CESA_like is 29.5 2.1E+02 0.0046 21.9 6.0 17 177-193 78-94 (180)
77 cd00840 MPP_Mre11_N Mre11 nucl 29.2 2.8E+02 0.006 24.0 7.2 130 85-232 78-220 (223)
78 cd03789 GT1_LPS_heptosyltransf 29.2 1.7E+02 0.0036 26.9 6.2 42 104-145 15-58 (279)
79 PF01762 Galactosyl_T: Galacto 29.1 1.4E+02 0.003 26.4 5.5 83 99-191 1-94 (195)
80 PF03389 MobA_MobL: MobA/MobL 28.1 1.8E+02 0.0038 27.2 6.2 56 138-212 70-125 (216)
81 PF00072 Response_reg: Respons 28.0 82 0.0018 23.7 3.4 24 107-130 60-83 (112)
82 PF08138 Sex_peptide: Sex pept 27.9 34 0.00073 27.0 1.2 19 52-70 34-52 (56)
83 cd04506 SGNH_hydrolase_YpmR_li 27.5 2.7E+02 0.0058 24.0 6.8 27 99-125 102-128 (204)
84 PRK14872 rod shape-determining 26.9 42 0.0009 34.1 2.1 86 84-188 117-205 (337)
85 PRK10964 ADP-heptose:LPS hepto 26.7 1.3E+02 0.0029 28.2 5.3 30 102-131 13-43 (322)
86 TIGR01556 rhamnosyltran L-rham 26.6 2.9E+02 0.0063 25.1 7.3 75 103-193 8-89 (281)
87 cd01832 SGNH_hydrolase_like_1 25.9 4E+02 0.0086 22.3 7.5 65 98-186 87-151 (185)
88 PF12913 SH3_6: SH3 domain of 25.6 43 0.00094 25.8 1.5 29 69-97 9-38 (54)
89 PRK10422 lipopolysaccharide co 25.4 2.5E+02 0.0055 26.9 6.9 40 105-144 22-63 (352)
90 PRK10073 putative glycosyl tra 25.1 6.4E+02 0.014 24.5 11.8 17 288-304 200-216 (328)
91 KOG3487 TRAPP 20 K subunit [In 24.6 94 0.002 28.4 3.6 40 219-259 79-118 (139)
92 PTZ00138 small nuclear ribonuc 23.8 71 0.0015 26.7 2.5 68 148-229 7-81 (89)
93 TIGR02201 heptsyl_trn_III lipo 23.8 2.7E+02 0.0058 26.5 6.7 40 105-144 16-57 (344)
94 COG1658 Small primase-like pro 23.3 67 0.0015 28.5 2.4 25 106-130 43-67 (127)
95 cd06436 GlcNAc-1-P_transferase 22.9 4.9E+02 0.011 22.3 8.4 29 103-131 10-38 (191)
96 COG0369 CysJ Sulfite reductase 22.8 6.1E+02 0.013 27.7 9.8 143 87-244 390-559 (587)
97 cd06202 Nitric_oxide_synthase 22.6 6.7E+02 0.014 25.3 9.5 162 87-267 194-389 (406)
98 COG5597 Alpha-N-acetylglucosam 22.6 47 0.001 34.2 1.5 24 176-199 166-189 (368)
99 cd06442 DPM1_like DPM1_like re 22.1 4.2E+02 0.009 22.5 7.0 24 318-341 197-220 (224)
100 cd06420 GT2_Chondriotin_Pol_N 21.9 4E+02 0.0087 21.8 6.6 22 178-199 80-102 (182)
101 PF10111 Glyco_tranf_2_2: Glyc 21.4 4E+02 0.0087 24.9 7.3 18 177-194 88-105 (281)
102 PF07910 Peptidase_C78: Peptid 20.8 89 0.0019 29.6 2.9 28 315-342 102-135 (218)
103 PF08747 DUF1788: Domain of un 20.8 99 0.0021 27.0 2.9 48 105-152 46-108 (126)
104 PF14606 Lipase_GDSL_3: GDSL-l 20.3 1.8E+02 0.004 27.0 4.7 77 99-192 74-150 (178)
No 1
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=99.29 E-value=3.8e-11 Score=108.06 Aligned_cols=190 Identities=23% Similarity=0.311 Sum_probs=119.6
Q ss_pred HHHHHHHHhhCC-CccEEEEeCCCCCC---CC------CCCCeEEEecCCccCchhH---HHHHHHHHHHHHHHHHHHhc
Q 017999 106 NVFINFIQVTMP-KSDVFILTDPASDL---SM------PRKGVTIYPIHGEYSRDKL---MLQRIRSYITFLERRIREHS 172 (362)
Q Consensus 106 ~~Fi~sirvsmP-~snVVILTD~~T~~---sl------~~~r~~v~pi~g~YSR~~L---mlQRi~sYi~fLkT~i~e~~ 172 (362)
-+=|.||...++ .-++.||||.-++- .+ .+.++++++++.......- ..-...+|.++. |.++-
T Consensus 17 ~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~---i~~ll 93 (246)
T cd00505 17 IVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLH---LPNLV 93 (246)
T ss_pred HHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccccceeHHHH---HHHHh
Confidence 445678877776 46899999875541 11 1235688888532221100 011223445543 33331
Q ss_pred cCCCccccEEEeecCeeeecCchhhhccC-CCeeEEEe-----------eec-----CCCCcCcceEEEEeCCCCchhHH
Q 017999 173 QGQGHINHYVFTDSDIAVVDDLGHIFHDY-QNFHLALT-----------FRN-----NKDQPLNSGFIAVRGTPDGISRA 235 (362)
Q Consensus 173 ~~~~~i~dfIFiDsDiaVvDdLg~IFk~~-PdFHvALT-----------fRn-----nkdqPiNSGfIfVRgt~d~~~~A 235 (362)
...+-+|++|+||+|.+||.++|+.- .+..+|.. ++. ..+..+||||+.+. .+ .-+-
T Consensus 94 ---p~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsGVmlin--l~-~~r~ 167 (246)
T cd00505 94 ---PDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSGVFVVN--LS-KERR 167 (246)
T ss_pred ---hccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeeeeEEEe--ch-HHHH
Confidence 14789999999999999999999972 33455542 000 12357999999996 33 2223
Q ss_pred HHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCCCCCCCcccc-
Q 017999 236 KIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHG- 314 (362)
Q Consensus 236 ~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppegaGQfhg- 314 (362)
.++.+++++.|...- .+-..+||-+|+.+.+.++ ..+..|||. ||+.+. +.+..
T Consensus 168 ~~~~~~~~~~~~~~~--~~~~~~DQd~LN~~~~~~~-------------------~~i~~L~~~-wN~~~~---~~~~~~ 222 (246)
T cd00505 168 NQLLKVALEKWLQSL--SSLSGGDQDLLNTFFKQVP-------------------FIVKSLPCI-WNVRLT---GCYRSL 222 (246)
T ss_pred HHHHHHHHHHHHhhc--ccCccCCcHHHHHHHhcCC-------------------CeEEECCCe-eeEEec---Cccccc
Confidence 567777777665431 3457799999999886432 568999986 999843 22211
Q ss_pred -----CCcceeEEeeeccch
Q 017999 315 -----MPLDVKVVHFKGSRK 329 (362)
Q Consensus 315 -----mPldvKVlHFKGsRK 329 (362)
...+.|||||-|+.|
T Consensus 223 ~~~~~~~~~~~iiHy~g~~K 242 (246)
T cd00505 223 NCFKAFVKNAKVIHFNGPTK 242 (246)
T ss_pred cchhhhcCCCEEEEeCCCCC
Confidence 344899999999866
No 2
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.25 E-value=1.2e-10 Score=105.65 Aligned_cols=188 Identities=21% Similarity=0.202 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhhCCCccEEEEeCCC-CCC---CCCCCCeEEEecCCccCchhHH--HHHHHHHHHHHHHHHHHhccCCCc
Q 017999 104 ILNVFINFIQVTMPKSDVFILTDPA-SDL---SMPRKGVTIYPIHGEYSRDKLM--LQRIRSYITFLERRIREHSQGQGH 177 (362)
Q Consensus 104 vl~~Fi~sirvsmP~snVVILTD~~-T~~---sl~~~r~~v~pi~g~YSR~~Lm--lQRi~sYi~fLkT~i~e~~~~~~~ 177 (362)
-+.+-+.||+..+|+.+++||.++. ++. .+....+++.+++. ....... .++-.+-..|.|-.+-++ ..
T Consensus 15 ~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~~~~~v~~-i~~~~~~~~~~~~~~~~~~~kl~~~~l----~~ 89 (240)
T cd02537 15 GALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEP-IDPPDSANLLKRPRFKDTYTKLRLWNL----TE 89 (240)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEecCc-cCCcchhhhccchHHHHHhHHHHhccc----cc
Confidence 4556788999999999998887753 321 11122245555442 1111111 022223345555444443 46
Q ss_pred cccEEEeecCeeeecCchhhhccCCCeeEEEeeecCCCCcCcceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhh
Q 017999 178 INHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRML 257 (362)
Q Consensus 178 i~dfIFiDsDiaVvDdLg~IFk~~PdFHvALTfRnnkdqPiNSGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~as~ml 257 (362)
.+.+|++|+|++|..||.++|+. ++. ++-.........+||||+..+ ++ .+.+++..+...+.. +-..
T Consensus 90 ~drvlylD~D~~v~~~i~~Lf~~-~~~-~~a~~d~~~~~~fNsGv~l~~--~~-----~~~~~~~~~~~~~~~---~~~~ 157 (240)
T cd02537 90 YDKVVFLDADTLVLRNIDELFDL-PGE-FAAAPDCGWPDLFNSGVFVLK--PS-----EETFNDLLDALQDTP---SFDG 157 (240)
T ss_pred cceEEEEeCCeeEccCHHHHhCC-CCc-eeeecccCccccccceEEEEc--CC-----HHHHHHHHHHHhccC---CCCC
Confidence 79999999999999999999998 333 333322122357999999997 32 244455544433221 1345
Q ss_pred cchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCCCCCCCcc--ccCCcceeEEeeeccch
Q 017999 258 GDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQF--HGMPLDVKVVHFKGSRK 329 (362)
Q Consensus 258 GDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppegaGQf--hgmPldvKVlHFKGsRK 329 (362)
+||-.|+.+.+.++ .+..|||. ||+..+-....- .-...+.||+||.|..|
T Consensus 158 ~DQdiLN~~~~~~~--------------------~~~~l~~~-yN~~~~~~~~~~~~~~~~~~~~iiHf~g~~K 210 (240)
T cd02537 158 GDQGLLNSYFSDRG--------------------IWKRLPFT-YNALKPLRYLHPEALWFGDEIKVVHFIGGDK 210 (240)
T ss_pred CCHHHHHHHHcCCC--------------------CEeECCcc-eeeehhhhccCchhhcccCCcEEEEEeCCCC
Confidence 89999999986432 57788988 888743221000 11234789999999755
No 3
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=99.15 E-value=2.6e-10 Score=101.87 Aligned_cols=206 Identities=22% Similarity=0.246 Sum_probs=123.4
Q ss_pred ceEecccccccchhhhHHHHHHHHHHHhhCC--CccEEEEeCCCCCCCC---------CCCCeEEEecCCccCchhHHHH
Q 017999 87 MVTVGNASYSKTERSMAILNVFINFIQVTMP--KSDVFILTDPASDLSM---------PRKGVTIYPIHGEYSRDKLMLQ 155 (362)
Q Consensus 87 ~v~vg~~~y~k~~r~~avl~~Fi~sirvsmP--~snVVILTD~~T~~sl---------~~~r~~v~pi~g~YSR~~LmlQ 155 (362)
.|++.+..|. .-+-+-+.||...+| ..++.||||.-++... .+..+.+++++...-......+
T Consensus 3 I~~~~d~~y~------~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 76 (248)
T cd04194 3 IVFAIDDNYA------PYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATT 76 (248)
T ss_pred EEEEecHhhH------HHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCccc
Confidence 3455555552 234455789999898 6699999986442211 1235677777532111000011
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhcc-CCCeeEEEe--ee-------------cCCCCcCc
Q 017999 156 RIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHD-YQNFHLALT--FR-------------NNKDQPLN 219 (362)
Q Consensus 156 Ri~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~-~PdFHvALT--fR-------------nnkdqPiN 219 (362)
+.-+...|.+=-+.++ ....+.+|++|+|++|.+||.++|+. .++.-+|.. .. ......+|
T Consensus 77 ~~~~~~~y~rl~l~~l---l~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfN 153 (248)
T cd04194 77 DHISYATYYRLLIPDL---LPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFN 153 (248)
T ss_pred ccccHHHHHHHHHHHH---hcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccceee
Confidence 1122233333334433 12478999999999999999999997 233344442 10 12235699
Q ss_pred ceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecc
Q 017999 220 SGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCA 299 (362)
Q Consensus 220 SGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~ 299 (362)
|||+.+. .+ .-+...+.+++++.....- ..-.++||-+|+.+... .+..|| .
T Consensus 154 sGv~l~n--l~-~~r~~~~~~~~~~~~~~~~--~~~~~~DQd~LN~~~~~----------------------~~~~L~-~ 205 (248)
T cd04194 154 SGVLLIN--LK-KWREENITEKLLELIKEYG--GRLIYPDQDILNAVLKD----------------------KILYLP-P 205 (248)
T ss_pred ecchhee--HH-HHHHhhhHHHHHHHHHhCC--CceeeCChHHHHHHHhC----------------------CeEEcC-c
Confidence 9999995 22 2334556677766555442 23568999999988742 268899 4
Q ss_pred cccCCCCCCCCccc---------cCCcceeEEeeeccch
Q 017999 300 TYNWTPPEGAGQFH---------GMPLDVKVVHFKGSRK 329 (362)
Q Consensus 300 ~YNwtppegaGQfh---------gmPldvKVlHFKGsRK 329 (362)
.||+.+-...-... -...+.|||||-|+.|
T Consensus 206 ~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~~K 244 (248)
T cd04194 206 RYNFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDK 244 (248)
T ss_pred ccccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCCCC
Confidence 59998544332211 1345899999999866
No 4
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.10 E-value=1.9e-11 Score=104.75 Aligned_cols=138 Identities=24% Similarity=0.312 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhccCCC-eeEEEe-e-----------------ecCCCCcCcce
Q 017999 161 ITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQN-FHLALT-F-----------------RNNKDQPLNSG 221 (362)
Q Consensus 161 i~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~~Pd-FHvALT-f-----------------RnnkdqPiNSG 221 (362)
..|.+-.+.++ ....+.+||+|+||+|.+||.++|..-++ --+|.. . .......+|||
T Consensus 85 ~~~~rl~i~~l---l~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fNsG 161 (250)
T PF01501_consen 85 ATFARLFIPDL---LPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFNSG 161 (250)
T ss_dssp GGGGGGGHHHH---STTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEEEE
T ss_pred HHHHHhhhHHH---HhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCcccccccCc
Confidence 34444444444 24669999999999999999999985222 112211 1 11335669999
Q ss_pred EEEEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccc
Q 017999 222 FIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATY 301 (362)
Q Consensus 222 fIfVRgt~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~Y 301 (362)
|+... ++ ..+...+.+++.+.....- .+-.++||-.|+.+.. .++..||| .|
T Consensus 162 v~l~~--~~-~~~~~~~~~~~~~~~~~~~--~~~~~~DQ~~ln~~~~----------------------~~~~~L~~-~~ 213 (250)
T PF01501_consen 162 VMLFN--PS-KWRKENILQKLIEWLEQNG--MKLGFPDQDILNIVFY----------------------GNIKPLPC-RY 213 (250)
T ss_dssp EEEEE--HH-HHHHHHHHHHHHHHHHHTT--TT-SSCHHHHHHHHHT----------------------TGEEEEEG-GG
T ss_pred EEEEe--ec-hhhhhhhhhhhhhhhhhcc--cccCcCchHHHhhhcc----------------------ceeEEECc-hh
Confidence 99996 33 2223345555444432221 1456999999999984 46789998 69
Q ss_pred cCCCCCC---CCccccCCcceeEEeeeccch
Q 017999 302 NWTPPEG---AGQFHGMPLDVKVVHFKGSRK 329 (362)
Q Consensus 302 Nwtppeg---aGQfhgmPldvKVlHFKGsRK 329 (362)
||.+.-. .-.+..--.++||+||-|..|
T Consensus 214 N~~~~~~~~~~~~~~~~~~~~~iiHy~g~~K 244 (250)
T PF01501_consen 214 NCQPSWYNQSDDYFNPILEDAKIIHYSGPPK 244 (250)
T ss_dssp SEEHHHHHHTHHHHHHHGCC-SEEE--SSS-
T ss_pred ccccccccccchhhHhhcCCeEEEEeCCCCc
Confidence 9984322 111233445999999999877
No 5
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=98.83 E-value=7.6e-08 Score=90.99 Aligned_cols=210 Identities=19% Similarity=0.264 Sum_probs=118.7
Q ss_pred HHHHHHHHHhhCCC-ccEEEEeCCCCCCCC---------CCCCeEEEecCCccCchh-HHHHHHHHHHHHHHHHHHHhcc
Q 017999 105 LNVFINFIQVTMPK-SDVFILTDPASDLSM---------PRKGVTIYPIHGEYSRDK-LMLQRIRSYITFLERRIREHSQ 173 (362)
Q Consensus 105 l~~Fi~sirvsmP~-snVVILTD~~T~~sl---------~~~r~~v~pi~g~YSR~~-LmlQRi~sYi~fLkT~i~e~~~ 173 (362)
+.+.|.||-..+.. -++=|++|..++-.+ .+-.+.++.+...-++-+ +.-.++-+|++|..-.|.++-
T Consensus 16 ~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~ll- 94 (280)
T cd06431 16 VVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEAL- 94 (280)
T ss_pred HHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhc-
Confidence 34566777333322 488899997764321 122456666631111100 001133345555565666652
Q ss_pred CCCccccEEEeecCeeeecCchhhhccC---CCee-EEE-e-----e-----e-----cCCCCcCcceEEEEeCCCCchh
Q 017999 174 GQGHINHYVFTDSDIAVVDDLGHIFHDY---QNFH-LAL-T-----F-----R-----NNKDQPLNSGFIAVRGTPDGIS 233 (362)
Q Consensus 174 ~~~~i~dfIFiDsDiaVvDdLg~IFk~~---PdFH-vAL-T-----f-----R-----nnkdqPiNSGfIfVRgt~d~~~ 233 (362)
++.++-.|++|||++|.+||.++|+.. -+-. +|. + + + .+.+..+||||+..- -+ .-
T Consensus 95 -p~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~yFNsGVmlin--L~-~w 170 (280)
T cd06431 95 -PSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLD--LD-KL 170 (280)
T ss_pred -hhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhhhhhhhccCCCcccccceeeeeeeee--HH-HH
Confidence 124789999999999999999999862 1111 122 0 1 0 112347999999994 11 22
Q ss_pred HHHHHHHHHHHHHHHhhhh--HhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCCCCCCC-
Q 017999 234 RAKIFLEEVLRVYSSKYMN--ASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAG- 310 (362)
Q Consensus 234 ~A~~FLeeVleiY~sky~~--as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppegaG- 310 (362)
|...+-|++.+ +.+++.+ .+--+|||=+||-+.+.++ ..++.|||. |||......-
T Consensus 171 R~~~~~~~~~~-~~~~~~~~~~~~~~~DQDiLN~v~~~~~-------------------~~~~~L~~~-wN~~~~~~~~~ 229 (280)
T cd06431 171 RKMKWESMWRL-TAERELMSMLSTSLADQDIFNAVIKQNP-------------------FLVYQLPCA-WNVQLSDHTRS 229 (280)
T ss_pred HhhCHHHHHHH-HHHHHHhhcCCCCcCcHHHHHHHHcCCc-------------------ceeEECCCc-cccccCccchH
Confidence 34445555442 2223221 2245799999999997654 236789995 8987421100
Q ss_pred -ccccCCcceeEEeeeccch--------hhhHHhhhhhc
Q 017999 311 -QFHGMPLDVKVVHFKGSRK--------RLMLESWNFFS 340 (362)
Q Consensus 311 -QfhgmPldvKVlHFKGsRK--------rlMle~Wnf~~ 340 (362)
.-...+.+.+||||-|+-| ..--+.|..|.
T Consensus 230 ~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~ 268 (280)
T cd06431 230 EQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFL 268 (280)
T ss_pred hHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHH
Confidence 1112356889999999877 33445566665
No 6
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=98.75 E-value=5.6e-08 Score=85.08 Aligned_cols=116 Identities=22% Similarity=0.276 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhccCCCeeEEEeeec-------CCCCcCcceEE
Q 017999 151 KLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRN-------NKDQPLNSGFI 223 (362)
Q Consensus 151 ~LmlQRi~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~~PdFHvALTfRn-------nkdqPiNSGfI 223 (362)
.++..| ..++...|+ .--+++|+|.|++...|.-+.| +.++.|+.+.-.. ..+..+|+||+
T Consensus 50 ~~~~~K----~~~~~~~L~-------~G~~vl~~D~Dvv~~~dp~~~~-~~~~~Di~~~~d~~~~~~~~~~~~~~n~G~~ 117 (212)
T PF03407_consen 50 KLTWLK----PKVLLDLLE-------LGYDVLFSDADVVWLRDPLPYF-ENPDADILFSSDGWDGTNSDRNGNLVNTGFY 117 (212)
T ss_pred HHHHHH----HHHHHHHHH-------cCCceEEecCCEEEecCcHHhh-ccCCCceEEecCCCcccchhhcCCccccceE
Confidence 455555 445544444 2257999999999999999999 5589999886311 12234799999
Q ss_pred EEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccc
Q 017999 224 AVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATY 301 (362)
Q Consensus 224 fVRgt~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~Y 301 (362)
++|.|+. +++|+++|.+...+. .-..||.+|+++........ .+.++.+||...+
T Consensus 118 ~~r~t~~----~~~~~~~w~~~~~~~-----~~~~DQ~~~n~~l~~~~~~~--------------~~~~~~~L~~~~f 172 (212)
T PF03407_consen 118 YFRPTPR----TIAFLEDWLERMAES-----PGCWDQQAFNELLREQAARY--------------GGLRVRFLPPSLF 172 (212)
T ss_pred EEecCHH----HHHHHHHHHHHHHhC-----CCcchHHHHHHHHHhcccCC--------------cCcEEEEeCHHHe
Confidence 9999987 999999999977544 11229999999997543111 8899999998887
No 7
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=98.71 E-value=3.5e-07 Score=85.81 Aligned_cols=191 Identities=18% Similarity=0.102 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhh-CCCc-cEEEEeCCCCCCCC---------CCCCeEEEecCCccCchhHH------------------
Q 017999 103 AILNVFINFIQVT-MPKS-DVFILTDPASDLSM---------PRKGVTIYPIHGEYSRDKLM------------------ 153 (362)
Q Consensus 103 avl~~Fi~sirvs-mP~s-nVVILTD~~T~~sl---------~~~r~~v~pi~g~YSR~~Lm------------------ 153 (362)
|..-+-++++... .|.. ..-|+||..|.-.+ .+-.+.++.+..+.-++...
T Consensus 12 ~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (257)
T cd06429 12 AAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSNLKQ 91 (257)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhhhcccccccccc
Confidence 3444555666543 3322 56689998874221 13467888885432111100
Q ss_pred -HHHHHHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhccCCCeeEEEeeecCCCCcCcceEEEEeCCCCch
Q 017999 154 -LQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGI 232 (362)
Q Consensus 154 -lQRi~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~~PdFHvALTfRnnkdqPiNSGfIfVRgt~d~~ 232 (362)
....-|+..|+.=-|.++-. .++-.|++|||++|..||+++|+.-.+-+++---.+ .+||||+.+- -+ .
T Consensus 92 ~~~~~~s~~~y~Rl~ip~llp---~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d----yfNsGV~lin--l~-~ 161 (257)
T cd06429 92 RKPEYISLLNFARFYLPELFP---KLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET----SWNPGVNVVN--LT-E 161 (257)
T ss_pred CCccccCHHHHHHHHHHHHhh---hhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh----hcccceEEEe--HH-H
Confidence 00112233333334444411 357899999999999999999998322232222222 7999999994 21 1
Q ss_pred hHHHHHHHHHHHHHHHhhhh---HhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCCCCCC
Q 017999 233 SRAKIFLEEVLRVYSSKYMN---ASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGA 309 (362)
Q Consensus 233 ~~A~~FLeeVleiY~sky~~---as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppega 309 (362)
-|..++-|++++ |.++.-+ ..-..|||.+|+-+... .+.+|||. ||.. +.
T Consensus 162 wr~~~i~~~~~~-~~~~~~~~~~~~~~~~dqd~ln~~~~~----------------------~~~~L~~~-wN~~---~l 214 (257)
T cd06429 162 WRRQNVTETYEK-WMELNQEEEVTLWKLITLPPGLIVFYG----------------------LTSPLDPS-WHVR---GL 214 (257)
T ss_pred HHhccHHHHHHH-HHHHhhhcccchhhcCCccHHHHHccC----------------------eeEECChH-Hccc---CC
Confidence 222333333333 2222111 11345788888876642 35566663 5543 11
Q ss_pred Ccc----ccCCcceeEEeeeccchh
Q 017999 310 GQF----HGMPLDVKVVHFKGSRKR 330 (362)
Q Consensus 310 GQf----hgmPldvKVlHFKGsRKr 330 (362)
|.- ...-.+.|||||-|..|=
T Consensus 215 ~~~~~~~~~~~~~~~IIHy~G~~KP 239 (257)
T cd06429 215 GYNYGIRPQDIKAAAVLHFNGNMKP 239 (257)
T ss_pred cccccccccccCCcEEEEECCCCCC
Confidence 100 111238899999998774
No 8
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=98.64 E-value=6.2e-07 Score=85.81 Aligned_cols=187 Identities=17% Similarity=0.184 Sum_probs=121.3
Q ss_pred HHHHHHHhhCCCccEEEEeCCCCCCC-----------CCCCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCC
Q 017999 107 VFINFIQVTMPKSDVFILTDPASDLS-----------MPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQ 175 (362)
Q Consensus 107 ~Fi~sirvsmP~snVVILTD~~T~~s-----------l~~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~ 175 (362)
+...|||......+.|||.++.-... +.+.++.+.++|-...++ ...+. + ..|.|=.+-++
T Consensus 18 vL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~--~~~~~-~-~~~tKl~~~~l---- 89 (278)
T cd06914 18 ILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIASG--GDAYW-A-KSLTKLRAFNQ---- 89 (278)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccCCC--CCccH-H-HHHHHHHhccc----
Confidence 45689999999998888887765432 223456777777444332 11221 1 12444444333
Q ss_pred CccccEEEeecCeeeecCchhhhccCCCeeEEEeeecCCCCcCcceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhhHhh
Q 017999 176 GHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASR 255 (362)
Q Consensus 176 ~~i~dfIFiDsDiaVvDdLg~IFk~~PdFHvALTfRnnkdqPiNSGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~as~ 255 (362)
.+.+-.||+|+|++|..+|.++|..--..++|--- ....+|||++.+. ++ ...-.++.+++.+.... ..
T Consensus 90 ~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~Aap~---~~~~FNSGvmvi~--ps-~~~~~~l~~~~~~~~~~-----~~ 158 (278)
T cd06914 90 TEYDRIIYFDSDSIIRHPMDELFFLPNYIKFAAPR---AYWKFASHLMVIK--PS-KEAFKELMTEILPAYLN-----KK 158 (278)
T ss_pred cceeeEEEecCChhhhcChHHHhcCCcccceeeec---CcceecceeEEEe--CC-HHHHHHHHHHHHHhccc-----CC
Confidence 56789999999999999999999872245555421 1237999999997 54 33345555555554332 23
Q ss_pred hhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCCCCCCCcccc-------------CC----cc
Q 017999 256 MLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAGQFHG-------------MP----LD 318 (362)
Q Consensus 256 mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppegaGQfhg-------------mP----ld 318 (362)
-.+||=.||....... ++ ---++++||...||-...|=....|- +| .+
T Consensus 159 ~~~DQdiLN~~~~~~~----~~-----------~~~~~~~Lp~~~y~llt~~~r~~~~~~~l~~~~~~~~~w~~~~~~~~ 223 (278)
T cd06914 159 NEYDMDLINEEFYNSK----QL-----------FKPSVLVLPHRQYGLLTGEFREKLHKSFLSNAQHLYEKWDPDDVFKE 223 (278)
T ss_pred CCCChHHHHHHHhCCc----cc-----------cCcceEEcCccccccCChhhcccCHHHhhccccccccccCHHHHHhh
Confidence 5789999999987543 12 33478999999999776554333222 12 37
Q ss_pred eeEEeeecc
Q 017999 319 VKVVHFKGS 327 (362)
Q Consensus 319 vKVlHFKGs 327 (362)
.|+|||-++
T Consensus 224 ~k~vHFSd~ 232 (278)
T cd06914 224 SKVIHFSDS 232 (278)
T ss_pred CeEEEecCC
Confidence 899999988
No 9
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=98.61 E-value=8.5e-07 Score=86.11 Aligned_cols=175 Identities=18% Similarity=0.338 Sum_probs=106.1
Q ss_pred CccEEEEeCCCCCCCCCC----------CCe--EEEecCCccCchh------HHHHHHHHHHHHHHH-HHHHhccCCCcc
Q 017999 118 KSDVFILTDPASDLSMPR----------KGV--TIYPIHGEYSRDK------LMLQRIRSYITFLER-RIREHSQGQGHI 178 (362)
Q Consensus 118 ~snVVILTD~~T~~sl~~----------~r~--~v~pi~g~YSR~~------LmlQRi~sYi~fLkT-~i~e~~~~~~~i 178 (362)
.-+.-|+||.....+... ..+ .+++|. +..++ |+. + ..|.|++-. -|+ .+
T Consensus 29 ~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~--~P~~~~~~ws~l~~-~-~~y~RL~ip~lLp-------~~ 97 (304)
T cd06430 29 PLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPIT--FPSGNAAEWKKLFK-P-CAAQRLFLPSLLP-------DV 97 (304)
T ss_pred CEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEe--cCccchhhhhhccc-H-HHHHHHHHHHHhh-------hh
Confidence 448889999833322221 223 677774 33322 444 2 457776433 344 35
Q ss_pred ccEEEeecCeeeecCchhhhccCCCe---eEE-Ee----------eecCCC------CcCcceEEEEeCCCCchhHH---
Q 017999 179 NHYVFTDSDIAVVDDLGHIFHDYQNF---HLA-LT----------FRNNKD------QPLNSGFIAVRGTPDGISRA--- 235 (362)
Q Consensus 179 ~dfIFiDsDiaVvDdLg~IFk~~PdF---HvA-LT----------fRnnkd------qPiNSGfIfVRgt~d~~~~A--- 235 (362)
+..|.+|+||+|..||.++|+.+-+| .+| .. +.+... ..+||||+..- -+.. |.
T Consensus 98 dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~~~~~~~~~~~~~~~~~~gFNSGVmLmN--L~~w-R~~~~ 174 (304)
T cd06430 98 DSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIGWYNRFARHPYYGKTGVNSGVMLMN--LTRM-RRKYF 174 (304)
T ss_pred ceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccccchhhhhhhcccCcccccccccceeeee--HHHH-Hhhhc
Confidence 78999999999999999999863333 232 21 110011 12999999995 2211 12
Q ss_pred --------HHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCCCC
Q 017999 236 --------KIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPE 307 (362)
Q Consensus 236 --------~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppe 307 (362)
..+-|++.+.+. +|- .+--+|||=+||-+...+| ..+++|||. |||.| .
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~-~~~-~~l~~~DQDiLN~v~~~~p-------------------~~~~~Lp~~-wN~~~-d 231 (304)
T cd06430 175 KNDMTPVGLRWEEILMPLYK-KYK-LKITWGDQDLINIIFHHNP-------------------EMLYVFPCH-WNYRP-D 231 (304)
T ss_pred ccccchhhhhHHHHHHHHHH-hcc-cCCCCCCHHHHHHHHcCCC-------------------CeEEEcCcc-ccCCc-c
Confidence 223444544333 221 2235899999999998777 358999997 99997 4
Q ss_pred CC--CccccC--CcceeEEeeeccch
Q 017999 308 GA--GQFHGM--PLDVKVVHFKGSRK 329 (362)
Q Consensus 308 ga--GQfhgm--PldvKVlHFKGsRK 329 (362)
+. |.-|-. +.++||||.-+.-|
T Consensus 232 ~~~y~~~~~~~~~~~~~~~H~n~~~~ 257 (304)
T cd06430 232 HCMYGSNCKAAEEEGVFILHGNRGVY 257 (304)
T ss_pred ceeecccccccccccceEEEcCCCCC
Confidence 43 444443 35999999875544
No 10
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=98.51 E-value=5.1e-07 Score=87.08 Aligned_cols=197 Identities=18% Similarity=0.219 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHhhCCCc--cEEEEeCCCCCCCCC---------CCCeEEEecCCc-cCc-hhHHHHHHHHHHHHHHHHH
Q 017999 102 MAILNVFINFIQVTMPKS--DVFILTDPASDLSMP---------RKGVTIYPIHGE-YSR-DKLMLQRIRSYITFLERRI 168 (362)
Q Consensus 102 ~avl~~Fi~sirvsmP~s--nVVILTD~~T~~sl~---------~~r~~v~pi~g~-YSR-~~LmlQRi~sYi~fLkT~i 168 (362)
..-+-+=|.||-..+|+. ++-||+|.-++-... +..+.++.+..+ +.. ...-.-.+..|.|++ |
T Consensus 37 ~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~~~~~~~~~~~~~s~atY~Rl~---i 113 (334)
T PRK15171 37 LFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINCERLKSLPSTKNWTYATYFRFI---I 113 (334)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCHHHHhCCcccCcCCHHHHHHHH---H
Confidence 445677788997778884 689999866643211 234566666321 110 000012355566654 3
Q ss_pred HHhccCCCccccEEEeecCeeeecCchhhhcc-CCCeeEEEe--------eec--------C-CCCcCcceEEEEeCCCC
Q 017999 169 REHSQGQGHINHYVFTDSDIAVVDDLGHIFHD-YQNFHLALT--------FRN--------N-KDQPLNSGFIAVRGTPD 230 (362)
Q Consensus 169 ~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~-~PdFHvALT--------fRn--------n-kdqPiNSGfIfVRgt~d 230 (362)
.++- ++.++-.|++|||++|.+||.++|.. ..+..+|-- +.+ . .+..+||||+.+- -+
T Consensus 114 p~ll--p~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~~~~~~~~~l~~~~~~~~YFNsGVlliN--l~ 189 (334)
T PRK15171 114 ADYF--IDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAEWWSKRAQSLQTPGLASGYFNSGFLLIN--IP 189 (334)
T ss_pred HHhh--hhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchhHHHHHHHhcCCccccccceecceEEEc--HH
Confidence 3321 12478999999999999999999988 221333321 110 0 1247999999994 11
Q ss_pred chhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCCC---C
Q 017999 231 GISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPP---E 307 (362)
Q Consensus 231 ~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtpp---e 307 (362)
.-+...+-+++.+....+-+...-..+||=+||-+.+. .+++||| .||+.-- |
T Consensus 190 -~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN~~~~~----------------------~~~~L~~-~wN~~~~~~~~ 245 (334)
T PRK15171 190 -AWAQENISAKAIEMLADPEIVSRITHLDQDVLNILLAG----------------------KVKFIDA-KYNTQFSLNYE 245 (334)
T ss_pred -HHHHhhHHHHHHHHHhccccccceeecChhHHHHHHcC----------------------CeEECCH-hhCCccchhHH
Confidence 22233445555544432211122346799999888742 4678887 6776420 0
Q ss_pred CCCccccCC--cceeEEeeeccchh
Q 017999 308 GAGQFHGMP--LDVKVVHFKGSRKR 330 (362)
Q Consensus 308 gaGQfhgmP--ldvKVlHFKGsRKr 330 (362)
.. .-+-.| -+.+||||-|+.|=
T Consensus 246 ~~-~~~~~~~~~~p~IIHy~G~~KP 269 (334)
T PRK15171 246 LK-DSVINPVNDETVFIHYIGPTKP 269 (334)
T ss_pred HH-hcccccccCCCEEEEECCCCCC
Confidence 00 000112 36789999999774
No 11
>PLN00176 galactinol synthase
Probab=98.47 E-value=2.8e-06 Score=83.31 Aligned_cols=209 Identities=19% Similarity=0.302 Sum_probs=115.9
Q ss_pred ceE--ecccccccchhhhHHHHHHHHHHHhhCCCccEEEEeCCC-CC---CCCCCCCeEEEecCCccCchh---HHHHHH
Q 017999 87 MVT--VGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPA-SD---LSMPRKGVTIYPIHGEYSRDK---LMLQRI 157 (362)
Q Consensus 87 ~v~--vg~~~y~k~~r~~avl~~Fi~sirvsmP~snVVILTD~~-T~---~sl~~~r~~v~pi~g~YSR~~---LmlQRi 157 (362)
-|| .+|..|-+- + -+-..|||.......+|||+.+. ++ ..|......|.+|+.-+..++ +-..++
T Consensus 25 yVT~L~~n~~Y~~G-----a-~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~~~~~ 98 (333)
T PLN00176 25 YVTFLAGNGDYVKG-----V-VGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFAMAYY 98 (333)
T ss_pred EEEEEecCcchHHH-----H-HHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccccchh
Confidence 455 367777432 2 34458899998888888876543 21 112222335554432221111 100110
Q ss_pred HHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhccCCCeeEE-Ee--eec----------------------
Q 017999 158 RSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLA-LT--FRN---------------------- 212 (362)
Q Consensus 158 ~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~~PdFHvA-LT--fRn---------------------- 212 (362)
-+.|=|=++-++ ...+-.||+|+||+|.++|.++|.. |+-.++ .. |-+
T Consensus 99 --~i~~tKl~iw~l----~~ydkvlyLDaD~lv~~nid~Lf~~-~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~ 171 (333)
T PLN00176 99 --VINYSKLRIWEF----VEYSKMIYLDGDIQVFENIDHLFDL-PDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVT 171 (333)
T ss_pred --hhhhhhhhhccc----cccceEEEecCCEEeecChHHHhcC-CCcceEEEecccccccccccccccccccccchhhcc
Confidence 022333334333 4678999999999999999999987 443221 10 110
Q ss_pred -------CCCCcCcceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhccccccccc
Q 017999 213 -------NKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFV 285 (362)
Q Consensus 213 -------nkdqPiNSGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~ 285 (362)
.....+|||++.+. +. ..-++++++..... ..--++||-.||...+.
T Consensus 172 wp~~~g~~~~~yFNSGVlvin--ps-----~~~~~~ll~~l~~~---~~~~f~DQD~LN~~F~~---------------- 225 (333)
T PLN00176 172 WPAELGPPPPLYFNAGMFVFE--PS-----LSTYEDLLETLKIT---PPTPFAEQDFLNMFFRD---------------- 225 (333)
T ss_pred chhhccCCCCCeEEeEEEEEE--cC-----HHHHHHHHHHHHhc---CCCCCCCHHHHHHHHcC----------------
Confidence 01235999999997 53 23345555433221 12357999999999862
Q ss_pred ccccceEEEEeecccccCCCC---CCCCccccCCcceeEEeeecc-c-----------------hhhhHHhhhhhccCC
Q 017999 286 EDIIGASVLFLPCATYNWTPP---EGAGQFHGMPLDVKVVHFKGS-R-----------------KRLMLESWNFFSSSS 343 (362)
Q Consensus 286 ~~v~g~sVlfLPC~~YNwtpp---egaGQfhgmPldvKVlHFKGs-R-----------------KrlMle~Wnf~~s~~ 343 (362)
.+..||. +||+.-. ++..-+. ..++|||||-|. . |.+...-|..|+..+
T Consensus 226 ------~~~~Lp~-~YN~~~~~~~~~~~~~~--~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~~ 295 (333)
T PLN00176 226 ------IYKPIPP-VYNLVLAMLWRHPENVE--LDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDES 295 (333)
T ss_pred ------cEEECCc-hhcCchhhhhhChhhcc--cCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHHHHHHHHhcccc
Confidence 2355664 4665410 0111111 348999999963 1 444556788888655
No 12
>PLN02769 Probable galacturonosyltransferase
Probab=98.14 E-value=8.9e-06 Score=85.74 Aligned_cols=158 Identities=22% Similarity=0.206 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhcc---------CCCeeEEE---------eeecCCCCcCc
Q 017999 158 RSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHD---------YQNFHLAL---------TFRNNKDQPLN 219 (362)
Q Consensus 158 ~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~---------~PdFHvAL---------TfRnnkdqPiN 219 (362)
-+|.+|+ |.|+-. .++-+|++|+||+|.+||.++|+. +.+|...+ .+.+.+.+.+|
T Consensus 438 ~nh~Rfy---IPELLP---~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~rl~~~~~yl~~~~F~~~~CyFN 511 (629)
T PLN02769 438 FSHSHFL---LPEIFK---KLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNSCAWM 511 (629)
T ss_pred HHHHHHH---HHHHhh---hcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhhhhhhhhhhhcccCCCccccccc
Confidence 3455544 555521 368999999999999999999996 22221111 01123456689
Q ss_pred ceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhh---HhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEe
Q 017999 220 SGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMN---ASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFL 296 (362)
Q Consensus 220 SGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~---as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfL 296 (362)
+||+.+- -+ .-|-.++-+.+++ |.+++.+ ..-..++|.+++-+.. -.+..|
T Consensus 512 SGVLLIN--L~-~WRk~nITe~~~~-~~~~~~~~~~~~~~~~~Lp~lnlvF~----------------------g~v~~L 565 (629)
T PLN02769 512 SGLNVID--LD-KWRELDVTETYLK-LLQKFSKDGEESLRAAALPASLLTFQ----------------------DLIYPL 565 (629)
T ss_pred cCeeEee--HH-HHHHhCHHHHHHH-HHHHhhhcccccccccCcCHHHHHhc----------------------CeEEEC
Confidence 9999993 11 0111111111111 1122111 0112244444443332 236677
Q ss_pred ecccccCCCCCCCCcccc----CCcceeEEeeeccchhh-------hHHhhhhhccCCCcccceee
Q 017999 297 PCATYNWTPPEGAGQFHG----MPLDVKVVHFKGSRKRL-------MLESWNFFSSSSDISDMLCL 351 (362)
Q Consensus 297 PC~~YNwtppegaGQfhg----mPldvKVlHFKGsRKrl-------Mle~Wnf~~s~~~~~~m~cl 351 (362)
|+. ||+. |.|...+ .-.+.+||||-|..|=- .-++|..|...++-.=-.|-
T Consensus 566 D~r-WNv~---gLG~~~~i~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~~fl~~Cn 627 (629)
T PLN02769 566 DDR-WVLS---GLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDDRFMDECN 627 (629)
T ss_pred CHH-Hccc---cccccccccccccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCChHHhhCC
Confidence 763 5654 4443332 23478999999987633 56889888876655444453
No 13
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=98.02 E-value=3.9e-05 Score=71.32 Aligned_cols=168 Identities=13% Similarity=0.096 Sum_probs=93.0
Q ss_pred HHHHHHHHhhCC-CccEEEEeCCCCCCC---CC------CCCeEEEecC-CccCchhHHHHH-HHHHHHHHHH-HHHHhc
Q 017999 106 NVFINFIQVTMP-KSDVFILTDPASDLS---MP------RKGVTIYPIH-GEYSRDKLMLQR-IRSYITFLER-RIREHS 172 (362)
Q Consensus 106 ~~Fi~sirvsmP-~snVVILTD~~T~~s---l~------~~r~~v~pi~-g~YSR~~LmlQR-i~sYi~fLkT-~i~e~~ 172 (362)
-+=+.||...+. .-++-||+|.-|+-. +. +..+.++.+. .++-+...-.+| +.+|.+++-. -|++
T Consensus 17 ~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~~lLP~-- 94 (248)
T cd06432 17 RIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRIIWGYKILFLDVLFPL-- 94 (248)
T ss_pred HHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccchhHHHHHHHHHHHhhhh--
Confidence 344567755553 358889998766211 11 1244556553 111111111122 3456654333 4542
Q ss_pred cCCCccccEEEeecCeeeecCchhhhcc---------CCCeeEEEeee-----------c--CCCCcCcceEEEEeCCCC
Q 017999 173 QGQGHINHYVFTDSDIAVVDDLGHIFHD---------YQNFHLALTFR-----------N--NKDQPLNSGFIAVRGTPD 230 (362)
Q Consensus 173 ~~~~~i~dfIFiDsDiaVvDdLg~IFk~---------~PdFHvALTfR-----------n--nkdqPiNSGfIfVRgt~d 230 (362)
.++..|++|+||+|.+||.++++. ++|++..-+.+ + ..+-++||||+.+- =
T Consensus 95 ----~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNSGVmliN---L 167 (248)
T cd06432 95 ----NVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHISALYVVD---L 167 (248)
T ss_pred ----ccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccceeeEEEe---H
Confidence 368999999999999999999987 33333211110 0 11237999999993 2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhHhh-hhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCC
Q 017999 231 GISRAKIFLEEVLRVYSSKYMNASR-MLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWT 304 (362)
Q Consensus 231 ~~~~A~~FLeeVleiY~sky~~as~-mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwt 304 (362)
..-|...+-++|.++|...--+..+ .+.||=+||-+.. +.++++|||. |||+
T Consensus 168 ~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN~v~~---------------------~~~i~~Lp~~-w~~~ 220 (248)
T cd06432 168 KRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPNNMQH---------------------QVPIFSLPQE-WLWC 220 (248)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhHHHhc---------------------cCCeEECChH-HHHH
Confidence 2344555666666666421000111 3468888887763 2347888886 5654
No 14
>PLN02718 Probable galacturonosyltransferase
Probab=97.92 E-value=7.9e-05 Score=78.48 Aligned_cols=243 Identities=20% Similarity=0.203 Sum_probs=126.6
Q ss_pred eecccCCCCCCCcccccccC-----------------------cc-cceEecccccccchhhhHHHHHHHHHH-Hhh-CC
Q 017999 64 ILGPAAGQRLPNRLQCQDSR-----------------------AS-NMVTVGNASYSKTERSMAILNVFINFI-QVT-MP 117 (362)
Q Consensus 64 ~~~~aag~g~~~rlqc~~~~-----------------------~~-~~v~vg~~~y~k~~r~~avl~~Fi~si-rvs-mP 117 (362)
.++--|.+++|--|+|-..+ ++ -.+.++.--| .. +.+=|.|+ ..+ +|
T Consensus 268 ~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~~Hia~~sDNv--la-----asVvInSil~Ns~np 340 (603)
T PLN02718 268 YLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVVFSDNV--LA-----CSVVVNSTISSSKEP 340 (603)
T ss_pred HHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcceeEEEEcCCc--ee-----EEEEhhhhhhccCCC
Confidence 45556788888888888877 00 1112222222 11 22234555 332 45
Q ss_pred C-ccEEEEeCCCCCCCC------C---CCCeEEEecC------CccCchhHHH-----HHHHHHHHHHHHHHHHhccCCC
Q 017999 118 K-SDVFILTDPASDLSM------P---RKGVTIYPIH------GEYSRDKLML-----QRIRSYITFLERRIREHSQGQG 176 (362)
Q Consensus 118 ~-snVVILTD~~T~~sl------~---~~r~~v~pi~------g~YSR~~Lml-----QRi~sYi~fLkT~i~e~~~~~~ 176 (362)
+ -..-|+||.-+.-.. . +-.+.++.+. ++|+- -+.. .++-|+..|+.=-|.++-.
T Consensus 341 ~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~-~lk~l~s~~~~~~S~~~y~Rl~ipellp--- 416 (603)
T PLN02718 341 EKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNS-LLMKQNSHDPRYISALNHARFYLPDIFP--- 416 (603)
T ss_pred CcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchh-hhhhccccccccccHHHHHHHHHHHHhc---
Confidence 5 356689997764221 1 2355666664 22211 1111 1233344444444555422
Q ss_pred ccccEEEeecCeeeecCchhhhcc---------CCCeeEEEe----------e--------ecCCCCcCcceEEEEeCCC
Q 017999 177 HINHYVFTDSDIAVVDDLGHIFHD---------YQNFHLALT----------F--------RNNKDQPLNSGFIAVRGTP 229 (362)
Q Consensus 177 ~i~dfIFiDsDiaVvDdLg~IFk~---------~PdFHvALT----------f--------RnnkdqPiNSGfIfVRgt~ 229 (362)
.++-+|++|+|++|.+||.++|+. +++|+..+. | -|.+.+.+|+||+.+=
T Consensus 417 ~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~fn~~~CyfNsGVlLID--- 493 (603)
T PLN02718 417 GLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFD--- 493 (603)
T ss_pred ccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchhhhcccCCCccccccceEEEe---
Confidence 368999999999999999999886 444433211 1 1235677899999983
Q ss_pred CchhHHHHHHHHHHHHHH----Hhhhh--Hhhhhcchhhhh---HHhhcCCCcchhcccccccccccccceEEEEeeccc
Q 017999 230 DGISRAKIFLEEVLRVYS----SKYMN--ASRMLGDQLALA---WVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCAT 300 (362)
Q Consensus 230 d~~~~A~~FLeeVleiY~----sky~~--as~mlGDQlALa---~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~ 300 (362)
|++|-+-=. .+|++ ..+.+.||-+|+ -+... .+..||. .
T Consensus 494 ---------Lk~WReenITe~~~~~l~~n~~~~l~dqdaLpp~LlvF~g----------------------ri~~LD~-r 541 (603)
T PLN02718 494 ---------LEEWRRQKLTSVYHKYLQLGVKRPLWKAGSLPIGWLTFYN----------------------QTVALDK-R 541 (603)
T ss_pred ---------HHHHHhcChHHHHHHHHHhccCccccCcccccHHHHHhcC----------------------ceeecCh-H
Confidence 333332110 11111 224556666665 33322 1333333 2
Q ss_pred ccCCCCCC-CCccccCCcceeEEeeeccchh-------hhHHhhhhhccCCCcccceeee
Q 017999 301 YNWTPPEG-AGQFHGMPLDVKVVHFKGSRKR-------LMLESWNFFSSSSDISDMLCLI 352 (362)
Q Consensus 301 YNwtppeg-aGQfhgmPldvKVlHFKGsRKr-------lMle~Wnf~~s~~~~~~m~cli 352 (362)
||...-.. .+--.....+.+||||-|..|= -.-++|.-|...++-.=-.|-|
T Consensus 542 WNv~gLG~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~~l~~Cn~ 601 (603)
T PLN02718 542 WHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQQCNI 601 (603)
T ss_pred HhccCccccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCChHHHhcCC
Confidence 33221000 0011123568899999998552 2357899998777655455644
No 15
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.80 E-value=0.00011 Score=72.11 Aligned_cols=190 Identities=19% Similarity=0.299 Sum_probs=118.6
Q ss_pred HHHHHHHhhCC--CccEEEEeCCCCCCCCC---------CCCeEEEecC-----------CccCchhHHHHHHHHHHHHH
Q 017999 107 VFINFIQVTMP--KSDVFILTDPASDLSMP---------RKGVTIYPIH-----------GEYSRDKLMLQRIRSYITFL 164 (362)
Q Consensus 107 ~Fi~sirvsmP--~snVVILTD~~T~~sl~---------~~r~~v~pi~-----------g~YSR~~LmlQRi~sYi~fL 164 (362)
|=|+||=.+|+ ..+.=||+|.-++-... +..+.++.+. .+||+ ..|.||+
T Consensus 19 vsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~~~~~~~~~~s~--------~v~~R~f 90 (325)
T COG1442 19 VSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFLDYPPFTKRFSK--------MVLVRYF 90 (325)
T ss_pred HHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhhcccccccchHH--------HHHHHHH
Confidence 44688888888 56778888876542111 1123333331 22332 2344454
Q ss_pred HHHHHHhccCCCccccEEEeecCeeeecCchhhhcc-CCCeeEEEe--e--------------ecCCCCcCcceEEEEeC
Q 017999 165 ERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHD-YQNFHLALT--F--------------RNNKDQPLNSGFIAVRG 227 (362)
Q Consensus 165 kT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~-~PdFHvALT--f--------------RnnkdqPiNSGfIfVRg 227 (362)
-..+= ..-+-.|.+|+|++|+.||+++|.- .++..+|-. + .+-.+.++|+||+.+-
T Consensus 91 iadlf------~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~~~~~~~~~~~~~~~~yFNaG~llin- 163 (325)
T COG1442 91 LADLF------PQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYMKEGALRLEKGDLEGSYFNAGVLLIN- 163 (325)
T ss_pred HHHhc------cccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhhhhhhhHhhhcccccccCccceeeeh-
Confidence 44322 1227899999999999999999987 445555552 1 1244577999999994
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCCCC
Q 017999 228 TPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPE 307 (362)
Q Consensus 228 t~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppe 307 (362)
.+ .=+.....++.++..... +..--.+||-.|+.+.+ ..+++||| .||.. |.
T Consensus 164 -l~-~W~~~~i~~k~i~~~~~~--~~~~~~~DQdiLN~i~~----------------------~~~~~L~~-~YN~~-~~ 215 (325)
T COG1442 164 -LK-LWREENIFEKLIELLKDK--ENDLLYPDQDILNMIFE----------------------DRVLELPI-RYNAI-PY 215 (325)
T ss_pred -HH-HHHHhhhHHHHHHHHhcc--ccccCCccccHHHHHHH----------------------hhhhccCc-cccee-eh
Confidence 21 233344444444443211 02235678888888775 24677777 58888 56
Q ss_pred CCCcccc---CCc--ceeEEeeeccchhhhHHhhhhh
Q 017999 308 GAGQFHG---MPL--DVKVVHFKGSRKRLMLESWNFF 339 (362)
Q Consensus 308 gaGQfhg---mPl--dvKVlHFKGsRKrlMle~Wnf~ 339 (362)
...|..- +|. +.-++||-|.+|=-+..+|+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~ 252 (325)
T COG1442 216 IDSQLKDKYIYPFGDDPVILHYAGPTKPWHSDSSNYP 252 (325)
T ss_pred hhhccchhhhccCCCCceEEEecCCCCCCcCcccccc
Confidence 6666655 555 7789999999999888887764
No 16
>PLN02523 galacturonosyltransferase
Probab=97.78 E-value=0.0004 Score=72.78 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=82.0
Q ss_pred HHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhcc---------CCCeeE---------EE------eeecCCCCc
Q 017999 162 TFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHD---------YQNFHL---------AL------TFRNNKDQP 217 (362)
Q Consensus 162 ~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~---------~PdFHv---------AL------TfRnnkdqP 217 (362)
.|+.=-|+|+-. .++-+|++|+||+|.+||.++|+. +.+|.. .+ .+.|.+.+.
T Consensus 364 ny~Rf~IPeLLP---~ldKVLYLD~DVVVq~DLseLw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~ 440 (559)
T PLN02523 364 NHLRFYLPEMYP---KLHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACA 440 (559)
T ss_pred HHHHHHHHHHhc---ccCeEEEEeCCEEecCCHHHHHhCcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCccc
Confidence 333334555521 478999999999999999999986 333311 11 133566667
Q ss_pred CcceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhH---HhhcCCCcchhcccccccccccccceEEE
Q 017999 218 LNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAW---VVKSHPSFDARRFTKAQPFVEDIIGASVL 294 (362)
Q Consensus 218 iNSGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~---~vk~~~~~~~~~f~~~~af~~~v~g~sVl 294 (362)
.|+||+.+= -+ .=+-.++-|+. ..|.+ ++...-+.||-+|+- +... .+.
T Consensus 441 wnsGVmlIN--L~-~WRe~nITek~-~~w~~--ln~~~~l~DqdaLpp~LivF~g----------------------ri~ 492 (559)
T PLN02523 441 WAYGMNIFD--LD-AWRREKCTEQY-HYWQN--LNENRTLWKLGTLPPGLITFYS----------------------TTK 492 (559)
T ss_pred ccCCcEEEe--HH-HHHHhchHHHH-HHHHH--hccccccccccccchHHHHhcC----------------------ceE
Confidence 777999983 00 11112222222 11211 223345566666642 2221 133
Q ss_pred EeecccccCC-----CCCCCCccccCCcceeEEeeeccchhh-------hHHhhhhhccCCCcccceee
Q 017999 295 FLPCATYNWT-----PPEGAGQFHGMPLDVKVVHFKGSRKRL-------MLESWNFFSSSSDISDMLCL 351 (362)
Q Consensus 295 fLPC~~YNwt-----ppegaGQfhgmPldvKVlHFKGsRKrl-------Mle~Wnf~~s~~~~~~m~cl 351 (362)
.|+- .||+. |.+ ......+-+||||-|..|=- -.++|.-|...++-.=-.|-
T Consensus 493 ~LD~-rWNvlglGy~~~i----~~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~fl~~Cn 556 (559)
T PLN02523 493 PLDK-SWHVLGLGYNPSI----SMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDMEFVQACN 556 (559)
T ss_pred ecCc-hhhccCCccCCCc----cccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCHHHHhCC
Confidence 3332 23322 211 11223578999999987743 34678888766654444453
No 17
>PLN02870 Probable galacturonosyltransferase
Probab=97.68 E-value=0.00011 Score=76.63 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=81.3
Q ss_pred ccccEEEeecCeeeecCchhhhcc---------CCCeeEE--------E-eee-----------cCCCCcCcceEEEEeC
Q 017999 177 HINHYVFTDSDIAVVDDLGHIFHD---------YQNFHLA--------L-TFR-----------NNKDQPLNSGFIAVRG 227 (362)
Q Consensus 177 ~i~dfIFiDsDiaVvDdLg~IFk~---------~PdFHvA--------L-TfR-----------nnkdqPiNSGfIfVRg 227 (362)
.++-+|++|+|++|.+||.++|+. +++|..+ + .|- +.+++..|+||+.+-
T Consensus 342 ~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~~~cyfNSGVlLIN- 420 (533)
T PLN02870 342 NLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDPEECAWAYGMNIFD- 420 (533)
T ss_pred hcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCcccceeeccchhcc-
Confidence 468999999999999999999997 3333211 0 011 234566789999983
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhH---HhhcCCCcchhcccccccccccccceEEEEeecccccCC
Q 017999 228 TPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAW---VVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWT 304 (362)
Q Consensus 228 t~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~---~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwt 304 (362)
-+ .=|-.++-|+.++.. ++..+...-+.||-+|.- +...+ +.+||- .||..
T Consensus 421 -L~-~WRe~nITek~~~~l-~~n~~~~l~l~DQdaLp~~livf~g~----------------------v~~LD~-rWN~~ 474 (533)
T PLN02870 421 -LR-AWRKTNIRETYHSWL-KENLKSNLTMWKLGTLPPALIAFKGH----------------------VHPIDP-SWHML 474 (533)
T ss_pred -HH-HHHHcChHHHHHHHH-HhhhhcCceecccccccHhHHHhcCc----------------------eEECCh-HHhcC
Confidence 00 001111222222211 111111124678877743 22221 333332 23322
Q ss_pred CCC-CCCccccCCcceeEEeeeccchhhh-------HHhhhhhccCCCcccceeeee
Q 017999 305 PPE-GAGQFHGMPLDVKVVHFKGSRKRLM-------LESWNFFSSSSDISDMLCLIL 353 (362)
Q Consensus 305 ppe-gaGQfhgmPldvKVlHFKGsRKrlM-------le~Wnf~~s~~~~~~m~clil 353 (362)
.-. ..+.......+.+||||-|..|=-. -.+|.-|...++-.=-.|-|.
T Consensus 475 gLgy~~~~~~~~i~~aaIIHY~G~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 531 (533)
T PLN02870 475 GLGYQSKTNIESVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHIL 531 (533)
T ss_pred CCCCcccccccccCCcEEEEECCCCCCccccCccchhHHHHHHHccCchHhhhcCCC
Confidence 000 0122334556889999999877553 348888887776665667664
No 18
>PLN02659 Probable galacturonosyltransferase
Probab=97.68 E-value=0.00013 Score=76.07 Aligned_cols=150 Identities=19% Similarity=0.151 Sum_probs=82.9
Q ss_pred ccccEEEeecCeeeecCchhhhcc---------CCCeeE--------------EE------eeecCCCCcCcceEEEEeC
Q 017999 177 HINHYVFTDSDIAVVDDLGHIFHD---------YQNFHL--------------AL------TFRNNKDQPLNSGFIAVRG 227 (362)
Q Consensus 177 ~i~dfIFiDsDiaVvDdLg~IFk~---------~PdFHv--------------AL------TfRnnkdqPiNSGfIfVRg 227 (362)
.++-.|++|+||+|.+||.++|+. ++||.. .+ .+.|.+.+.+|+||+.+-
T Consensus 343 ~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlLIN- 421 (534)
T PLN02659 343 SLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIFD- 421 (534)
T ss_pred hcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeEee-
Confidence 468999999999999999999987 444321 11 112445678999999993
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCCCC
Q 017999 228 TPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPE 307 (362)
Q Consensus 228 t~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppe 307 (362)
=..=|-.++-|+.++.. ++..+....+.||-+|+-.+. +=.-.+.+||. .||..
T Consensus 422 --Lk~WRe~nITek~l~~l-~~n~~~~l~l~DQdaLp~~Li-------------------vF~g~v~~LD~-rWN~~--- 475 (534)
T PLN02659 422 --LEAWRKTNISSTYHHWL-EENLKSDLSLWQLGTLPPGLI-------------------AFHGHVHVIDP-FWHML--- 475 (534)
T ss_pred --HHHHHhcChHHHHHHHH-HhcccccccccccccchHHHH-------------------HhcCCEEECCh-hheec---
Confidence 00111112222222211 111112234557766643221 00112445554 24432
Q ss_pred CCCcc----ccCCcceeEEeeeccchhh-------hHHhhhhhccCCCcccceeeee
Q 017999 308 GAGQF----HGMPLDVKVVHFKGSRKRL-------MLESWNFFSSSSDISDMLCLIL 353 (362)
Q Consensus 308 gaGQf----hgmPldvKVlHFKGsRKrl-------Mle~Wnf~~s~~~~~~m~clil 353 (362)
|-|.- .....+.+||||-|..|=- --++|.-|...++-.=-.|-|+
T Consensus 476 gLg~~~~~~~~~i~~paIIHYnG~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 532 (534)
T PLN02659 476 GLGYQENTSLADAESAGVVHFNGRAKPWLDIAFPQLRPLWAKYIDSSDKFIKSCHIR 532 (534)
T ss_pred CCcccccccccccCCcEEEEECCCCCccccccCCcchhHHHHHhccCCHHHHhcCCC
Confidence 11110 1134588999999986632 2378988888777666667665
No 19
>PLN02867 Probable galacturonosyltransferase
Probab=97.55 E-value=0.00034 Score=72.97 Aligned_cols=157 Identities=23% Similarity=0.254 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhccCCCee-E-EE----------------eeec--------
Q 017999 159 SYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFH-L-AL----------------TFRN-------- 212 (362)
Q Consensus 159 sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~~PdFH-v-AL----------------TfRn-------- 212 (362)
|...|+.=-|+|+-. .++-.|++|+|++|..||.++|+.=-+-. + |+ +|-|
T Consensus 329 S~lnYlRflIPeLLP---~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~ 405 (535)
T PLN02867 329 SLLNHLRIYIPELFP---DLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISS 405 (535)
T ss_pred hHHHHHHHHHHHHhh---ccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhc
Confidence 333455555666632 47899999999999999999998811111 0 11 0111
Q ss_pred ---CCCCcCcceEEEEeCCCCchhHHHHHHHHHHHHHH-Hhh---hhH----hhhhcchhhhhHHhhcCCCcchhccccc
Q 017999 213 ---NKDQPLNSGFIAVRGTPDGISRAKIFLEEVLRVYS-SKY---MNA----SRMLGDQLALAWVVKSHPSFDARRFTKA 281 (362)
Q Consensus 213 ---nkdqPiNSGfIfVRgt~d~~~~A~~FLeeVleiY~-sky---~~a----s~mlGDQlALa~~vk~~~~~~~~~f~~~ 281 (362)
.+.+.+|+||+.+= +++|.+--. ++| ++. ...+.||-+|+.+.-
T Consensus 406 ~~~p~~cYFNSGVmLIN------------L~~WRe~nITek~~~~Le~n~~~~~~l~dqd~LN~~Ll------------- 460 (535)
T PLN02867 406 NLDQERCAWLYGMNVFD------------LKAWRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALL------------- 460 (535)
T ss_pred cCCCCCcceecceeeee------------HHHHHHhcHHHHHHHHHHhchhcccccccccccchHHH-------------
Confidence 23456899999983 333433221 111 111 124566666665321
Q ss_pred ccccccccceEEEEeecccccCCCCCCCCc-----cccCCcceeEEeeeccchhh-------hHHhhhhhccCCCcccce
Q 017999 282 QPFVEDIIGASVLFLPCATYNWTPPEGAGQ-----FHGMPLDVKVVHFKGSRKRL-------MLESWNFFSSSSDISDML 349 (362)
Q Consensus 282 ~af~~~v~g~sVlfLPC~~YNwtppegaGQ-----fhgmPldvKVlHFKGsRKrl-------Mle~Wnf~~s~~~~~~m~ 349 (362)
.| .-.+..||. .|||. |.|. ......+.+||||-|+.|=- .-++|.-|..-++..--.
T Consensus 461 -vF-----~g~v~~LD~-rWNv~---gLgy~~~~~~~~~i~~paIIHYnG~~KPW~e~~~~~yR~~W~kyl~~~~~fl~~ 530 (535)
T PLN02867 461 -AF-----KGHVHPIDP-SWHVA---GLGSRPPEVPREILESAAVLHFSGPAKPWLEIGFPEVRSLWYRHVNFSDKFIRK 530 (535)
T ss_pred -Hh-----cCcEEECCh-hhccc---CCCcccccchhhhcCCcEEEEECCCCCcccccCCCchhHHHHHhcCccchHHHh
Confidence 01 112555654 46653 2221 11234578999999986632 478899999888877556
Q ss_pred eeee
Q 017999 350 CLIL 353 (362)
Q Consensus 350 clil 353 (362)
|-|+
T Consensus 531 cni~ 534 (535)
T PLN02867 531 CRIM 534 (535)
T ss_pred cccC
Confidence 8765
No 20
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=97.48 E-value=0.00035 Score=74.23 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=81.6
Q ss_pred cccEEEeecCeeeecCchhhhcc---------CCCeeEEE---------------eeecCCCCcCcceEEEEeCCCCchh
Q 017999 178 INHYVFTDSDIAVVDDLGHIFHD---------YQNFHLAL---------------TFRNNKDQPLNSGFIAVRGTPDGIS 233 (362)
Q Consensus 178 i~dfIFiDsDiaVvDdLg~IFk~---------~PdFHvAL---------------TfRnnkdqPiNSGfIfVRgt~d~~~ 233 (362)
++-+|++|+|++|.+||.++|+. +++|+..+ .+.|.+.+..|+||+.+= -+ .=
T Consensus 475 l~KVLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVID--L~-~W 551 (657)
T PLN02910 475 LEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFD--LK-EW 551 (657)
T ss_pred cCeEEEEeCCEEecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEe--HH-HH
Confidence 67899999999999999999987 44443321 123456777888999983 00 00
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcchhhhhH---HhhcCCCcchhcccccccccccccceEEEEeecccccCCCCCCCC
Q 017999 234 RAKIFLEEVLRVYSSKYMNASRMLGDQLALAW---VVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAG 310 (362)
Q Consensus 234 ~A~~FLeeVleiY~sky~~as~mlGDQlALa~---~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppegaG 310 (362)
+-.++ .+.++-|.+. +..+-+.||-+|.= +...+-..--.++...-- | | - .+
T Consensus 552 Re~nI-Te~ye~w~el--n~~~~L~dqgsLPpgLLvF~g~i~pLD~rWNv~GL------G----------y--d----~~ 606 (657)
T PLN02910 552 RKRNI-TGIYHYWQDL--NEDRTLWKLGSLPPGLITFYNLTYPLDRSWHVLGL------G----------Y--D----PA 606 (657)
T ss_pred HHhhH-HHHHHHHHHh--cccccccccCCCChHHHHHhCceeecCchheecCC------C----------C--C----cc
Confidence 01111 1123333332 24466788866652 222111111112111110 0 1 1 22
Q ss_pred ccccCCcceeEEeeeccchhh-------hHHhhhhhccCCCcccceeee
Q 017999 311 QFHGMPLDVKVVHFKGSRKRL-------MLESWNFFSSSSDISDMLCLI 352 (362)
Q Consensus 311 QfhgmPldvKVlHFKGsRKrl-------Mle~Wnf~~s~~~~~~m~cli 352 (362)
.+.+...+.+||||-|..|=- -..+|.-|...++-.=-.|-|
T Consensus 607 v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~~W~kYl~~d~~fl~~Cni 655 (657)
T PLN02910 607 LNQTEIENAAVVHYNGNYKPWLDLAIAKYKPYWSRYVQYDNPYLQLCNI 655 (657)
T ss_pred cccccccCcEEEEeCCCCCcccccCcccchHHHHHHccCCChHHHhCCC
Confidence 233455679999999997743 346899888777655555654
No 21
>PLN02829 Probable galacturonosyltransferase
Probab=97.33 E-value=0.00055 Score=72.66 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=37.2
Q ss_pred ccccEEEeecCeeeecCchhhhcc---------CCCeeEEE---------------eeecCCCCcCcceEEEEe
Q 017999 177 HINHYVFTDSDIAVVDDLGHIFHD---------YQNFHLAL---------------TFRNNKDQPLNSGFIAVR 226 (362)
Q Consensus 177 ~i~dfIFiDsDiaVvDdLg~IFk~---------~PdFHvAL---------------TfRnnkdqPiNSGfIfVR 226 (362)
.++-+|++|+|++|++||.++|+. +++|+..+ .+.|...+.+|+||+.+=
T Consensus 456 ~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVIN 529 (639)
T PLN02829 456 KLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFD 529 (639)
T ss_pred ccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEe
Confidence 368999999999999999999987 44443221 011346678999999983
No 22
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=97.09 E-value=0.00038 Score=64.70 Aligned_cols=92 Identities=25% Similarity=0.350 Sum_probs=0.0
Q ss_pred CcCcceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEE
Q 017999 216 QPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLF 295 (362)
Q Consensus 216 qPiNSGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlf 295 (362)
.-+|.|++++|-++- ++.||+.|.+-....+-...-..+||-||+..++.||.+. ++ +.+
T Consensus 143 ~gLNtGsFliRns~w----s~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~~~~~-----~~-----------~~~ 202 (239)
T PF05637_consen 143 NGLNTGSFLIRNSPW----SRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQWHPEIL-----SK-----------VAL 202 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc----cccccccccccccccccccccccccccccccccccccccc-----cc-----------ccc
Confidence 349999999998887 8899999886554443222234799999999999887322 22 334
Q ss_pred eecccccCCCCCCCCccccCCcceeEEeeeccch
Q 017999 296 LPCATYNWTPPEGAGQFHGMPLDVKVVHFKGSRK 329 (362)
Q Consensus 296 LPC~~YNwtppegaGQfhgmPldvKVlHFKGsRK 329 (362)
+|...-|=.|.... .+.-.+-| =|+||.|=..
T Consensus 203 vpq~~~nsy~~~~~-~~~~~~GD-fvvhfaGC~~ 234 (239)
T PF05637_consen 203 VPQRWFNSYPEDEC-NYQYKEGD-FVVHFAGCKV 234 (239)
T ss_dssp ----------------------------------
T ss_pred cccccccccccccc-cccccccc-cccccccccc
Confidence 44433333222211 13334445 4889999654
No 23
>PLN02742 Probable galacturonosyltransferase
Probab=96.84 E-value=0.0026 Score=66.67 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=77.6
Q ss_pred cccEEEeecCeeeecCchhhhcc---------CCCeeEEEe-ee--------------cCCCCcCcceEEEEeCCCCchh
Q 017999 178 INHYVFTDSDIAVVDDLGHIFHD---------YQNFHLALT-FR--------------NNKDQPLNSGFIAVRGTPDGIS 233 (362)
Q Consensus 178 i~dfIFiDsDiaVvDdLg~IFk~---------~PdFHvALT-fR--------------nnkdqPiNSGfIfVRgt~d~~~ 233 (362)
.+.+|++|+|++|.+||.++|+. +++|+..+. |. +.+.+..|+||..+-=.. =
T Consensus 353 l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~---W 429 (534)
T PLN02742 353 LEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVA---W 429 (534)
T ss_pred cCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHH---H
Confidence 68999999999999999999987 444432221 11 245677999999883000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHH---hhcCCCcchhcccccccccccccceEEEEeecccccCCCCCCCC
Q 017999 234 RAKIFLEEVLRVYSSKYMNASRMLGDQLALAWV---VKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTPPEGAG 310 (362)
Q Consensus 234 ~A~~FLeeVleiY~sky~~as~mlGDQlALa~~---vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtppegaG 310 (362)
-++-+.+.++.|.+. +..+-+.||-+|.-. ...+- .-|+. .||.. |.|
T Consensus 430 -Re~nITe~~~~w~e~--n~~~~l~d~gaLpp~LLaF~g~~----------------------~~LD~-rWNv~---gLG 480 (534)
T PLN02742 430 -RKANVTAIYHYWQEQ--NVDRTLWKLGTLPPGLLTFYGLT----------------------EPLDR-RWHVL---GLG 480 (534)
T ss_pred -HhhcHHHHHHHHHHh--ccccccccccccchHHHHHcCcc----------------------eecCh-hheec---ccc
Confidence 011122233333332 244556666666533 21111 11111 12222 111
Q ss_pred c----cccCCcceeEEeeeccchh-------hhHHhhhhhccCCCcccceee
Q 017999 311 Q----FHGMPLDVKVVHFKGSRKR-------LMLESWNFFSSSSDISDMLCL 351 (362)
Q Consensus 311 Q----fhgmPldvKVlHFKGsRKr-------lMle~Wnf~~s~~~~~~m~cl 351 (362)
- .+....+.+||||-|..|= -.-+.|.-|...++-.=-.|-
T Consensus 481 ~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~fl~~Cn 532 (534)
T PLN02742 481 YDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCN 532 (534)
T ss_pred cccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHHHHhCC
Confidence 1 0124458899999998662 245688888776655444453
No 24
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=92.44 E-value=0.99 Score=45.55 Aligned_cols=211 Identities=22% Similarity=0.360 Sum_probs=105.9
Q ss_pred cceEecccccccchhhhHHHHHHHHHH-HhhCCCccEE--EEeCCCCCCC---CC-CCCeEEEecCCccCchhHHHHHHH
Q 017999 86 NMVTVGNASYSKTERSMAILNVFINFI-QVTMPKSDVF--ILTDPASDLS---MP-RKGVTIYPIHGEYSRDKLMLQRIR 158 (362)
Q Consensus 86 ~~v~vg~~~y~k~~r~~avl~~Fi~si-rvsmP~snVV--ILTD~~T~~s---l~-~~r~~v~pi~g~YSR~~LmlQRi~ 158 (362)
-.+|||=. |=-++|=..-|.-|+.|. +..||+.+|+ |+||.-..+. +. +.+.+|.+|+++-.=...-+.|.+
T Consensus 97 ~n~tIGL~-vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~~vP~i~l~~~r~~~V~~v~~~~~Wqd~sm~Rm~ 175 (337)
T PF03414_consen 97 QNITIGLT-VFATGKYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPSKVPRIELGPGRRLKVFEVQEEKRWQDISMMRME 175 (337)
T ss_dssp CT-EEEEE-EEE-CCHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GGGS------TTEEEEEEE-SGGSSHHHHHHHHHH
T ss_pred cCceEEEE-EEecccHHHHHHHHHHhHHHhccCCcEEEEEEEeCchhhCCccccCCCceeEEEEecccCCCccchhHHHH
Confidence 45677654 445677788999999999 7789999875 8999987653 22 346789999864433455566777
Q ss_pred HHHHHHHHHHHHhccCCCccccEEE-eecCeeeecCchh-hhcc-----CCCeeEE----EeeecC-C---CCcCcceEE
Q 017999 159 SYITFLERRIREHSQGQGHINHYVF-TDSDIAVVDDLGH-IFHD-----YQNFHLA----LTFRNN-K---DQPLNSGFI 223 (362)
Q Consensus 159 sYi~fLkT~i~e~~~~~~~i~dfIF-iDsDiaVvDdLg~-IFk~-----~PdFHvA----LTfRnn-k---dqPiNSGfI 223 (362)
....+++..+. ..-|||| .|.|++..++.|. +..+ ||.+--. +||--+ + =.|.+-|=.
T Consensus 176 ~i~~~i~~~~~-------~EvDYLFc~dvd~~F~~~vGvE~Lg~lva~LHp~~y~~~~~~FpYERrp~S~AyIp~~eGDf 248 (337)
T PF03414_consen 176 MISEHIEQHIQ-------HEVDYLFCMDVDMVFQDHVGVEILGDLVATLHPWFYFKPRESFPYERRPKSQAYIPYGEGDF 248 (337)
T ss_dssp HHHHHHHHCHH-------HH-SEEEEEESSEEE-S-B-GGG-SSEEEEESTTTTTSTGGGS--B-STTSTTB--TT--S-
T ss_pred HHHHHHHHHHh-------hcCCEEEEEecceEEecccCHHHHHHHHHHhCHHHHCCChhhCccccCccccccccCCCCCe
Confidence 77777766543 2346665 6999999987773 3322 3332110 122111 1 134455555
Q ss_pred EEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhc-ccccccccccccceEEEEeeccccc
Q 017999 224 AVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARR-FTKAQPFVEDIIGASVLFLPCATYN 302 (362)
Q Consensus 224 fVRgt~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~-f~~~~af~~~v~g~sVlfLPC~~YN 302 (362)
.+.|.--|= ...++|+-..+|...- +. ..-.-+--.|-.+||+ .| |--++ -++| | .-.|+
T Consensus 249 YY~ga~fGG-t~~~vl~Lt~~c~~~i-~~---D~~n~I~A~WhDESHL----NKYfl~~K-------PtKv--L-SPEY~ 309 (337)
T PF03414_consen 249 YYHGAFFGG-TVEEVLRLTEACHQGI-MQ---DKANGIEALWHDESHL----NKYFLYHK-------PTKV--L-SPEYC 309 (337)
T ss_dssp -EECCEEEE-CHHHHHHHHHHHHHHH-HH---HHHTT---TTCHHHHH----HHHHHHS---------SEE--E--GGGS
T ss_pred EEeceecCC-cHHHHHHHHHHHHHHH-Hh---hhhcCceEeccchhhh----HHHHhhCC-------Ccee--c-CHHHc
Confidence 554433221 1556666665555322 11 1112234455566666 22 11122 1232 3 35699
Q ss_pred CCCCCCCCccccCCcceeEEeeeccch
Q 017999 303 WTPPEGAGQFHGMPLDVKVVHFKGSRK 329 (362)
Q Consensus 303 wtppegaGQfhgmPldvKVlHFKGsRK 329 (362)
|-+ ++ |.|.++|++-|..--|
T Consensus 310 Wd~-----~~-~~p~~ik~vr~~~~~K 330 (337)
T PF03414_consen 310 WDE-----RF-GWPPQIKIVRFSWVPK 330 (337)
T ss_dssp BSH-----HH-SS-TTESSSSEEESS-
T ss_pred cCc-----cC-CCCcccceEEEEEecC
Confidence 951 33 7788888776654433
No 25
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=92.11 E-value=1.5 Score=43.19 Aligned_cols=210 Identities=17% Similarity=0.294 Sum_probs=117.0
Q ss_pred eEecccccccchhhhHHHHHHHHHH-HhhCCCccEE--EEeCCCCCCC---CC-CCCeEEEecCCccCchhHHHHHHHHH
Q 017999 88 VTVGNASYSKTERSMAILNVFINFI-QVTMPKSDVF--ILTDPASDLS---MP-RKGVTIYPIHGEYSRDKLMLQRIRSY 160 (362)
Q Consensus 88 v~vg~~~y~k~~r~~avl~~Fi~si-rvsmP~snVV--ILTD~~T~~s---l~-~~r~~v~pi~g~YSR~~LmlQRi~sY 160 (362)
.||| -.|=-+.|=..-+--|+.|. +..||+.+|+ |.||..+... +. +.+++|.+++.+-.=...-+.|....
T Consensus 34 ~tIg-l~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl~Rm~~~ 112 (271)
T cd02515 34 ITIG-LTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAAVPEVELGPGRRLTVLKIAEESRWQDISMRRMKTL 112 (271)
T ss_pred CEEE-EEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcccCcccccCCCceeEEEEeccccCCcHHHHHHHHHH
Confidence 3444 23445555566899999998 9999999775 8999777543 22 35689999976533333445563333
Q ss_pred HHHHHHHHHHhccCCCccccEEE-eecCeeeecCch-hhhcc-----CCCeeE----EEeeecCCC----CcCcceEEEE
Q 017999 161 ITFLERRIREHSQGQGHINHYVF-TDSDIAVVDDLG-HIFHD-----YQNFHL----ALTFRNNKD----QPLNSGFIAV 225 (362)
Q Consensus 161 i~fLkT~i~e~~~~~~~i~dfIF-iDsDiaVvDdLg-~IFk~-----~PdFHv----ALTfRnnkd----qPiNSGfIfV 225 (362)
... ++++. -..-|||| .|.|+.+.+..| ++..+ ||.+-- .+||--|.. .|.+-|=..+
T Consensus 113 ~~~----~~~~~---~~e~DYlF~~dvd~~F~~~ig~E~Lg~lva~lHp~~y~~~~~~fpYERrp~S~AyIp~~eGdfYy 185 (271)
T cd02515 113 ADH----IADRI---GHEVDYLFCMDVDMVFQGPFGVETLGDSVAQLHPWWYGKPRKQFPYERRPSSAAYIPEGEGDFYY 185 (271)
T ss_pred HHH----HHHhh---cccCCEEEEeeCCceEeecCCHHHhhhhheecChhhhcCCCCCCCCcCCCCccccccCCCCCeEE
Confidence 333 33331 12467776 699999998887 33332 333211 113311111 5666777766
Q ss_pred eCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHhhcCCCcchhcccccccccccccceEEEEeecccccCCC
Q 017999 226 RGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVVKSHPSFDARRFTKAQPFVEDIIGASVLFLPCATYNWTP 305 (362)
Q Consensus 226 Rgt~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~vk~~~~~~~~~f~~~~af~~~v~g~sVlfLPC~~YNwtp 305 (362)
-|.--| .+..+||+-...|-..- +..+ ..=+--+|-.+||+ -|+ |. ...-++| | .-.|+|-
T Consensus 186 ~Ga~~G-G~~~~vl~l~~~c~~~i-~~D~---~n~I~A~wHDESHL----NkY-----f~-~~Kp~Ki--L-SPeY~w~- 246 (271)
T cd02515 186 HGAVFG-GSVEEVYRLTRACHEGI-LADK---ANGIEARWHDESHL----NKY-----FL-LHKPTKV--L-SPEYLWD- 246 (271)
T ss_pred eeeecC-ccHHHHHHHHHHHHHHH-HHHH---hCCceEEeecHhHh----HHH-----Hh-hCCCCee--c-ChhhcCC-
Confidence 655443 23667777666665322 1111 11122356667777 222 11 1111333 3 3578886
Q ss_pred CCCCCccccCCcceeEEeeeccch
Q 017999 306 PEGAGQFHGMPLDVKVVHFKGSRK 329 (362)
Q Consensus 306 pegaGQfhgmPldvKVlHFKGsRK 329 (362)
| .-+.|.++|++-|..--|
T Consensus 247 -e----~~~~p~~~k~~r~~~~~K 265 (271)
T cd02515 247 -D----RIGQAAEIRLPRLSWLPK 265 (271)
T ss_pred -c----cCCCCcccceeEEEEecc
Confidence 3 245699999988765443
No 26
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=87.05 E-value=1.9 Score=41.45 Aligned_cols=121 Identities=20% Similarity=0.276 Sum_probs=71.2
Q ss_pred chhhhHHHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCCCeEEEecC----CccCchhHHHHHHHHHHHHHHHH-HHHhc
Q 017999 98 TERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIH----GEYSRDKLMLQRIRSYITFLERR-IREHS 172 (362)
Q Consensus 98 ~~r~~avl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~r~~v~pi~----g~YSR~~LmlQRi~sYi~fLkT~-i~e~~ 172 (362)
.|..=.+...-|.|+|..+|+-+|++||+.|-.- .+.+| ..+..+++ ..+-++.+|--. |.++
T Consensus 56 ~e~aP~~Vk~ci~s~~k~~~~~~Vi~lt~~Ni~~--------Yv~~P~~i~~k~~~g~i---~~a~~SDilR~~LL~~y- 123 (276)
T PF05704_consen 56 EENAPEIVKKCINSWRKNAPDYEVILLTEDNIKD--------YVDIPDFILEKYEKGKI---SPAHFSDILRLALLYKY- 123 (276)
T ss_pred ccccCHHHHHHHHHHHHHCCCCeEEEEChHHHHH--------HcCCchhHHHHHHcCCC---chhHHHHHHHHHHHHHc-
Confidence 3444567788899999999999999999865331 11223 22223222 223446666554 4444
Q ss_pred cCCCccccEEEeecCeeeecCchhhhccCCCeeEEEeeecC-CCCc-----CcceEEEEeCCCCchhHHHHHHHHHHHHH
Q 017999 173 QGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNN-KDQP-----LNSGFIAVRGTPDGISRAKIFLEEVLRVY 246 (362)
Q Consensus 173 ~~~~~i~dfIFiDsDiaVvDdLg~IFk~~PdFHvALTfRnn-kdqP-----iNSGfIfVRgt~d~~~~A~~FLeeVleiY 246 (362)
+| |.+|+++.++.+|.+...+-+=|-+ .+.. ...+ ..++||+.+.+.. |++.+++++
T Consensus 124 GG-------vWiDatv~~t~~l~~~~~~~~ff~~---~~~~~~~~~~~~~~w~~~fi~a~~~n~-------~~~~~~~~~ 186 (276)
T PF05704_consen 124 GG-------VWIDATVYLTKPLDDEIFDSDFFSF---SRPDKDYNPISISSWTNFFIAAKKGNP-------FIKFWRDLL 186 (276)
T ss_pred Cc-------EEeCCceEECCchhHHHhcCCeeEE---eccCcCcccchHHHhHhhheeECCCCH-------HHHHHHHHH
Confidence 22 7899999999999877664333322 1111 2222 2445777764443 555555555
Q ss_pred H
Q 017999 247 S 247 (362)
Q Consensus 247 ~ 247 (362)
.
T Consensus 187 ~ 187 (276)
T PF05704_consen 187 L 187 (276)
T ss_pred H
Confidence 3
No 27
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=79.24 E-value=5.8 Score=38.28 Aligned_cols=100 Identities=20% Similarity=0.169 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhccCCCeeEEEeeecCCC-CcCcceEEEEeCC
Q 017999 150 DKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKD-QPLNSGFIAVRGT 228 (362)
Q Consensus 150 ~~LmlQRi~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~~PdFHvALTfRnnkd-qPiNSGfIfVRgt 228 (362)
...|..| =--+...|+ ..+-.+|+|.||.||.-=-.|.+. -|=.+++||-|-.- .-+..|-=+||-|
T Consensus 25 kd~fFrR----HCvva~~L~-------~~~~vlflDaDigVvNp~~~iEef-id~~~Di~fydR~~n~Ei~agsYlvkNT 92 (222)
T PF03314_consen 25 KDKFFRR----HCVVAKILP-------EYDWVLFLDADIGVVNPNRRIEEF-IDEGYDIIFYDRFFNWEIAAGSYLVKNT 92 (222)
T ss_pred hhHHHHH----HHHHHHHhc-------cCCEEEEEcCCceeecCcccHHHh-cCCCCcEEEEecccchhhhhccceeeCC
Confidence 4467777 333333444 345889999999999765555544 34445555433333 3488999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHh
Q 017999 229 PDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVV 267 (362)
Q Consensus 229 ~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~v 267 (362)
+- |++||++|.+- ..+ +-.+--..|--||--..
T Consensus 93 ~~----~~~fl~~~a~~-E~~-lP~sfhGtDNGAlH~~L 125 (222)
T PF03314_consen 93 EY----SRDFLKEWADY-EFK-LPNSFHGTDNGALHIFL 125 (222)
T ss_pred HH----HHHHHHHHhhh-Ccc-CCCccccCccHHHHHHH
Confidence 87 99999999763 322 11121244555555444
No 28
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=74.15 E-value=23 Score=29.19 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=50.0
Q ss_pred chhhhHHHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCc
Q 017999 98 TERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGH 177 (362)
Q Consensus 98 ~~r~~avl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~ 177 (362)
.+.-..=+..+|..+|...|++.+++.+=+.+... + ..+++..|-+.+++..+++.. .
T Consensus 59 ~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~----------------~---~~~~~~~~n~~l~~~~~~~~~-~-- 116 (157)
T cd01833 59 PDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDA----------------S---GNARIAEYNAAIPGVVADLRT-A-- 116 (157)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCc----------------c---hhHHHHHHHHHHHHHHHHHhc-C--
Confidence 45666778899999999999999988764332211 0 045666778888888777622 1
Q ss_pred cccEEEeecCeeeec
Q 017999 178 INHYVFTDSDIAVVD 192 (362)
Q Consensus 178 i~dfIFiDsDiaVvD 192 (362)
..++.|+|......+
T Consensus 117 ~~~v~~vd~~~~~~~ 131 (157)
T cd01833 117 GSPVVLVDMSTGYTT 131 (157)
T ss_pred CCCEEEEecCCCCCC
Confidence 356888998776644
No 29
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=70.27 E-value=15 Score=31.52 Aligned_cols=89 Identities=13% Similarity=0.196 Sum_probs=39.6
Q ss_pred EecccccccchhhhHHHHHHHHHHHhhCCCccEEEEeCCCCCCCCC---------C-CCeEEEecCCccCchhHHHHHHH
Q 017999 89 TVGNASYSKTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMP---------R-KGVTIYPIHGEYSRDKLMLQRIR 158 (362)
Q Consensus 89 ~vg~~~y~k~~r~~avl~~Fi~sirvsmP~snVVILTD~~T~~sl~---------~-~r~~v~pi~g~YSR~~LmlQRi~ 158 (362)
+|-=-.|...+ .+..+.-+.++...|+..|+|+.|..++-+.. + .++.+++.+.+......
T Consensus 4 ~Vvip~~~~~~---~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k------ 74 (228)
T PF13641_consen 4 SVVIPAYNEDD---VLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGK------ 74 (228)
T ss_dssp EEE--BSS-HH---HHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHH------
T ss_pred EEEEEecCCHH---HHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchH------
Confidence 34334454433 44444444445445999999999776654322 1 14567766543321001
Q ss_pred HHHHHHHHHHHHhccCCCccccEEEeecCeeeecC
Q 017999 159 SYITFLERRIREHSQGQGHINHYVFTDSDIAVVDD 193 (362)
Q Consensus 159 sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDd 193 (362)
.+=+...++.- ..+.++|+|.|+++-.+
T Consensus 75 --~~a~n~~~~~~-----~~d~i~~lD~D~~~~p~ 102 (228)
T PF13641_consen 75 --ARALNEALAAA-----RGDYILFLDDDTVLDPD 102 (228)
T ss_dssp --HHHHHHHHHH--------SEEEEE-SSEEE-CH
T ss_pred --HHHHHHHHHhc-----CCCEEEEECCCcEECHH
Confidence 11111222221 35789999999998443
No 30
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=58.66 E-value=48 Score=30.62 Aligned_cols=75 Identities=20% Similarity=0.099 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCC-Cc-cEEEEeCCCCCCCCC-----------CCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHH
Q 017999 103 AILNVFINFIQVTMP-KS-DVFILTDPASDLSMP-----------RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIR 169 (362)
Q Consensus 103 avl~~Fi~sirvsmP-~s-nVVILTD~~T~~sl~-----------~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~ 169 (362)
..|-.-+.||....+ .. .=||+.|++|..... ..+++++..+.+..-. ..| + .-++
T Consensus 12 ~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~---~a~--N------~g~~ 80 (299)
T cd02510 12 STLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLI---RAR--I------AGAR 80 (299)
T ss_pred HHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHH---HHH--H------HHHH
Confidence 455556777755444 32 256677777654321 1357777766443321 111 1 1111
Q ss_pred HhccCCCccccEEEeecCeeeecC
Q 017999 170 EHSQGQGHINHYVFTDSDIAVVDD 193 (362)
Q Consensus 170 e~~~~~~~i~dfIFiDsDiaVvDd 193 (362)
+ ..-+-++|+|+|+.+..+
T Consensus 81 -~----A~gd~i~fLD~D~~~~~~ 99 (299)
T cd02510 81 -A----ATGDVLVFLDSHCEVNVG 99 (299)
T ss_pred -H----ccCCEEEEEeCCcccCcc
Confidence 1 133678899999998544
No 31
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=58.57 E-value=9.9 Score=30.62 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.5
Q ss_pred HHHHHHHhhCCCccEEEEeCCCC
Q 017999 107 VFINFIQVTMPKSDVFILTDPAS 129 (362)
Q Consensus 107 ~Fi~sirvsmP~snVVILTD~~T 129 (362)
..|.+.+..||+.+++++||...
T Consensus 6 ~~i~s~~~~nP~~~~~~~~d~~~ 28 (103)
T PF04488_consen 6 CSIESWARHNPDYEYILWTDESD 28 (103)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc
Confidence 35688899999999999999988
No 32
>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Probab=56.20 E-value=18 Score=32.52 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=28.1
Q ss_pred CcCcceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhh
Q 017999 216 QPLNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMN 252 (362)
Q Consensus 216 qPiNSGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~ 252 (362)
+|=|--|+|+++..- -..|+.|||||||+|-++-|+
T Consensus 75 ~pSgmkf~~iH~n~s-~~N~rsF~qevHely~ktLms 110 (136)
T COG5603 75 MPSGMKFLFIHQNQS-RKNARSFLQEVHELYAKTLMS 110 (136)
T ss_pred ccCCceEEEEeccch-hhhHHHHHHHHHHHHHHHhhC
Confidence 666777888886654 445999999999999887663
No 33
>PLN03181 glycosyltransferase; Provisional
Probab=56.04 E-value=23 Score=37.35 Aligned_cols=96 Identities=20% Similarity=0.318 Sum_probs=59.0
Q ss_pred HHHHHHHHhccCCCccccEEEeecCeeeecCchhh-hccCCCeeEEE------eeecCCCCc-CcceEEEEeCCCCchhH
Q 017999 163 FLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHI-FHDYQNFHLAL------TFRNNKDQP-LNSGFIAVRGTPDGISR 234 (362)
Q Consensus 163 fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~I-Fk~~PdFHvAL------TfRnnkdqP-iNSGfIfVRgt~d~~~~ 234 (362)
-|.+.|.++ -..+-|-++|+|++|.|---.| .+.+.+.++-+ .| ..++.- +|.|+-++|.|.=
T Consensus 188 alRaAM~a~----PeAEWfWWLDsDALIMNp~~sLPl~ry~~~NLvvhg~p~~vy-~~qdw~GlN~GsFLIRNcqW---- 258 (453)
T PLN03181 188 VVRAAMLAH----PEAEWIWWVDSDAVFTDMDFKLPLHRYRDHNLVVHGWPKLIY-EKRSWTALNAGVFLIRNCQW---- 258 (453)
T ss_pred HHHHHHHHC----CCceEEEEecCCceeecCCCCCCHhhcCCccccccCCccccc-ccccccccceeeeEEecCHH----
Confidence 344455555 3457888999999999862222 11244444433 23 234444 9999999998886
Q ss_pred HHHHHHHHHH------HHH-------HhhhhHh--hhhcchhhhhHHhh
Q 017999 235 AKIFLEEVLR------VYS-------SKYMNAS--RMLGDQLALAWVVK 268 (362)
Q Consensus 235 A~~FLeeVle------iY~-------sky~~as--~mlGDQlALa~~vk 268 (362)
+..||+.|-. .|. ++ ++.+ ----||.||.+..-
T Consensus 259 Sl~LLDaWa~Mgp~~p~~~~~G~~l~~~-l~~r~~~eaDDQsaLvyll~ 306 (453)
T PLN03181 259 SLDFMDAWASMGPASPEYAKWGKILRST-FKDKLFPESDDQSALVYLLY 306 (453)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHH-hCCCCCCCccchHHHHHHHH
Confidence 8889888865 221 12 2222 12359999997764
No 34
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=52.95 E-value=85 Score=26.89 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=49.9
Q ss_pred HHHHHHH-HhhCCCccEEEEeCCCCCCCCC----------CCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccC
Q 017999 106 NVFINFI-QVTMPKSDVFILTDPASDLSMP----------RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQG 174 (362)
Q Consensus 106 ~~Fi~si-rvsmP~snVVILTD~~T~~sl~----------~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~ 174 (362)
...+.|| ...+|+..+||..|..|+-+.. ..++.++..+.+.... -+..+ +.+-++.
T Consensus 17 ~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~----~n~g~~~---- 84 (196)
T cd02520 17 YENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGIN----PKVNN----LIKGYEE---- 84 (196)
T ss_pred HHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCC----HhHHH----HHHHHHh----
Confidence 3345555 3457888888888877765422 1234555554333210 01001 1111221
Q ss_pred CCccccEEEeecCeeeecC-chhhhccCCCeeEEEeeecCCCCcCcceEEEEe
Q 017999 175 QGHINHYVFTDSDIAVVDD-LGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVR 226 (362)
Q Consensus 175 ~~~i~dfIFiDsDiaVvDd-Lg~IFk~~PdFHvALTfRnnkdqPiNSGfIfVR 226 (362)
..-+-++|+|+|+.+..+ |.++-+..-+-++++..-. ..+++-+++|
T Consensus 85 -a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~----~~~g~~~~~r 132 (196)
T cd02520 85 -ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL----CAFGKSMALR 132 (196)
T ss_pred -CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee----cccCceeeeE
Confidence 134678899999987443 3333332112223333211 4555666665
No 35
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=51.17 E-value=1.1e+02 Score=23.65 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=41.3
Q ss_pred HHHHHHHHHhh-CCCccEEEEeCCCCCCCCC--------CCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCC
Q 017999 105 LNVFINFIQVT-MPKSDVFILTDPASDLSMP--------RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQ 175 (362)
Q Consensus 105 l~~Fi~sirvs-mP~snVVILTD~~T~~sl~--------~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~ 175 (362)
|...+.|++.. .+..+|||+-|..|+-+.. ..+++++..+.+.. +...+ -.-++..
T Consensus 13 l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g---~~~~~----n~~~~~a-------- 77 (169)
T PF00535_consen 13 LERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLG---FSAAR----NRGIKHA-------- 77 (169)
T ss_dssp HHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSH---HHHHH----HHHHHH---------
T ss_pred HHHHHHHHhhccCCCEEEEEecccccccccccccccccccccccccccccccc---ccccc----ccccccc--------
Confidence 34444555444 6666665554444332211 34678888886652 22222 2222222
Q ss_pred CccccEEEeecCeeeecC-chhhhcc
Q 017999 176 GHINHYVFTDSDIAVVDD-LGHIFHD 200 (362)
Q Consensus 176 ~~i~dfIFiDsDiaVvDd-Lg~IFk~ 200 (362)
..+=++|+|.|..+..+ |..+.+.
T Consensus 78 -~~~~i~~ld~D~~~~~~~l~~l~~~ 102 (169)
T PF00535_consen 78 -KGEYILFLDDDDIISPDWLEELVEA 102 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHH
T ss_pred -ceeEEEEeCCCceEcHHHHHHHHHH
Confidence 22367899999999888 4444433
No 36
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=51.11 E-value=1e+02 Score=25.23 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=15.6
Q ss_pred ccEEEeecCeeeecC-chhhhc
Q 017999 179 NHYVFTDSDIAVVDD-LGHIFH 199 (362)
Q Consensus 179 ~dfIFiDsDiaVvDd-Lg~IFk 199 (362)
+.++|+|+|..+..+ |..+..
T Consensus 81 d~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 81 DIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred CEEEEEeCCCCCCHHHHHHHHH
Confidence 789999999888766 444444
No 37
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=50.27 E-value=97 Score=24.47 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhh-CCCccEEEEeCCCCCCCCC-----CCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCc
Q 017999 104 ILNVFINFIQVT-MPKSDVFILTDPASDLSMP-----RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGH 177 (362)
Q Consensus 104 vl~~Fi~sirvs-mP~snVVILTD~~T~~sl~-----~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~ 177 (362)
.|.--+.||... .|...++|.-|..++-+.. ..+++++..+.+..... =+...+++. .
T Consensus 11 ~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----------a~n~~~~~~-----~ 74 (166)
T cd04186 11 YLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNGENLGFGA-----------GNNQGIREA-----K 74 (166)
T ss_pred HHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecCCCcChHH-----------HhhHHHhhC-----C
Confidence 344555666433 4677777766655543221 12356666554444311 112223322 5
Q ss_pred cccEEEeecCeeeecC-chhhhc---cCCCeeEEEeeecCCCCcCcceEEEEe
Q 017999 178 INHYVFTDSDIAVVDD-LGHIFH---DYQNFHLALTFRNNKDQPLNSGFIAVR 226 (362)
Q Consensus 178 i~dfIFiDsDiaVvDd-Lg~IFk---~~PdFHvALTfRnnkdqPiNSGfIfVR 226 (362)
.+.++|+|.|.....+ |..+-+ +.|+..+ +..+ +.++..+.|
T Consensus 75 ~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~ 120 (166)
T cd04186 75 GDYVLLLNPDTVVEPGALLELLDAAEQDPDVGI-VGPK------VSGAFLLVR 120 (166)
T ss_pred CCEEEEECCCcEECccHHHHHHHHHHhCCCceE-EEcc------CceeeEeee
Confidence 6789999999998776 444433 2344333 2232 666666665
No 38
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=48.58 E-value=84 Score=27.04 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhCCCccEEEEeCCCCCCCCC------CCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCc
Q 017999 104 ILNVFINFIQVTMPKSDVFILTDPASDLSMP------RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGH 177 (362)
Q Consensus 104 vl~~Fi~sirvsmP~snVVILTD~~T~~sl~------~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~ 177 (362)
.|...+.|+... ...||+.|.+|+.+.. ..++.++..+.+.....- +..-++.. .+. .
T Consensus 12 ~l~~~l~sl~~q---~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~~n~G~~~a-----------~N~g~~~a-~~~-~ 75 (237)
T cd02526 12 KLKELLAALAEQ---VDKVVVVDNSSGNDIELRLRLNSEKIELIHLGENLGIAKA-----------LNIGIKAA-LEN-G 75 (237)
T ss_pred HHHHHHHHHhcc---CCEEEEEeCCCCccHHHHhhccCCcEEEEECCCceehHHh-----------hhHHHHHH-HhC-C
Confidence 344555666543 3467777888764321 235677777655443111 11222222 111 3
Q ss_pred cccEEEeecCeeeecC-chhh
Q 017999 178 INHYVFTDSDIAVVDD-LGHI 197 (362)
Q Consensus 178 i~dfIFiDsDiaVvDd-Lg~I 197 (362)
.+.++|+|.|+.+-.+ |..+
T Consensus 76 ~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 76 ADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred CCEEEEECCCCCcCHhHHHHH
Confidence 5789999999987644 4444
No 39
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=48.17 E-value=69 Score=28.02 Aligned_cols=80 Identities=16% Similarity=0.305 Sum_probs=44.0
Q ss_pred HHHHHHHH-HhhCCC--ccEEEEeCCCCCCCCC------CCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCC
Q 017999 105 LNVFINFI-QVTMPK--SDVFILTDPASDLSMP------RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQ 175 (362)
Q Consensus 105 l~~Fi~si-rvsmP~--snVVILTD~~T~~sl~------~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~ 175 (362)
|...+.|+ +...|. .++||+-|..++.+.. .+++.++..+.+.++..-+ ..-++..
T Consensus 44 l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~~~~g~~~a~-----------n~gi~~a---- 108 (251)
T cd06439 44 IEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFPERRGKAAAL-----------NRALALA---- 108 (251)
T ss_pred HHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcCCCCChHHHH-----------HHHHHHc----
Confidence 33444444 446666 5777776665543322 1246777777665552211 1112211
Q ss_pred CccccEEEeecCeeeecC-chhhhcc
Q 017999 176 GHINHYVFTDSDIAVVDD-LGHIFHD 200 (362)
Q Consensus 176 ~~i~dfIFiDsDiaVvDd-Lg~IFk~ 200 (362)
..+.++|+|+|+....+ |..+.+.
T Consensus 109 -~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 109 -TGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred -CCCEEEEEccccCcCHHHHHHHHHH
Confidence 23778999999999765 4444444
No 40
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=47.29 E-value=51 Score=31.12 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=41.0
Q ss_pred hCCCccEEEEeCCCCCCCCCCCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCc
Q 017999 115 TMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDL 194 (362)
Q Consensus 115 smP~snVVILTD~~T~~sl~~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdL 194 (362)
..|+-.+++-+|..+..-....++.+.+++...+ ..++..+|+.. ++ -..++|++|+|++
T Consensus 31 ~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~--------~~~~~d~l~~~-~~-----------~~~~ydtVVIDsI 90 (220)
T TIGR01618 31 YLPGKTLVLSFDMSSKVLIGDENVDIADHDDMPP--------IQAMVEFYVMQ-NI-----------QAVKYDNIVIDNI 90 (220)
T ss_pred hcCCCCEEEeccccchhccCCCCCceeecCCCCC--------HHHHHHHHHHH-Hh-----------ccccCCEEEEecH
Confidence 3487788888888766543334567776643222 33344444311 11 1368999999999
Q ss_pred hhhhcc
Q 017999 195 GHIFHD 200 (362)
Q Consensus 195 g~IFk~ 200 (362)
+++.+.
T Consensus 91 ~~l~~~ 96 (220)
T TIGR01618 91 SALQNL 96 (220)
T ss_pred HHHHHH
Confidence 998775
No 41
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=46.34 E-value=24 Score=35.40 Aligned_cols=45 Identities=24% Similarity=0.488 Sum_probs=36.7
Q ss_pred ccEEEeecCeeeecCchhhhccCCCeeEEEe-eecCCCCcCcceEEEEe
Q 017999 179 NHYVFTDSDIAVVDDLGHIFHDYQNFHLALT-FRNNKDQPLNSGFIAVR 226 (362)
Q Consensus 179 ~dfIFiDsDiaVvDdLg~IFk~~PdFHvALT-fRnnkdqPiNSGfIfVR 226 (362)
+--|++|+||+++|.||-++- ||. +|+. -|++....+--|.|+|-
T Consensus 212 ~GCIYLD~DMilT~KLG~ly~--PDG-IavhV~r~~~~~slENg~I~Vn 257 (326)
T PRK15382 212 EGCIYLDADMIITDKLGVLYA--PDG-IAVHVDCNDDSKSLENGAIVVN 257 (326)
T ss_pred CceEEeecceeeecccccEEc--CCc-eEEEEEecCCccccccceEEEc
Confidence 557999999999999999874 454 5554 56788888999999995
No 42
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=46.00 E-value=97 Score=26.17 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=12.8
Q ss_pred cccEEEeecCeeeecC
Q 017999 178 INHYVFTDSDIAVVDD 193 (362)
Q Consensus 178 i~dfIFiDsDiaVvDd 193 (362)
-+-++|+|.|..+..|
T Consensus 83 ~d~i~~~D~D~~~~~~ 98 (229)
T cd04192 83 GDWIVTTDADCVVPSN 98 (229)
T ss_pred CCEEEEECCCcccCHH
Confidence 4678899999988654
No 43
>PRK15383 type III secretion system protein; Provisional
Probab=45.78 E-value=24 Score=35.40 Aligned_cols=45 Identities=27% Similarity=0.545 Sum_probs=36.5
Q ss_pred ccEEEeecCeeeecCchhhhccCCCeeEEEe-eecCCCCcCcceEEEEe
Q 017999 179 NHYVFTDSDIAVVDDLGHIFHDYQNFHLALT-FRNNKDQPLNSGFIAVR 226 (362)
Q Consensus 179 ~dfIFiDsDiaVvDdLg~IFk~~PdFHvALT-fRnnkdqPiNSGfIfVR 226 (362)
+--|++|+||+++|.||-++- ||. +|+. -|++....+--|.|+|-
T Consensus 220 ~GCIYLD~DMilT~KLG~ly~--PDG-IavhV~r~~~~~slENg~I~Vn 265 (335)
T PRK15383 220 GGCIYLDADMLLTDKLGTLYL--PDG-IAIHVSRKDNHVSLENGIIAVN 265 (335)
T ss_pred CceEEeecceeeecccccEEc--CCc-eEEEEEecCCceecccceEEEc
Confidence 556999999999999999874 454 5554 56777888999999995
No 44
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=45.36 E-value=74 Score=26.63 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=49.8
Q ss_pred cchhhhHHHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCC
Q 017999 97 KTERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQG 176 (362)
Q Consensus 97 k~~r~~avl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~ 176 (362)
..++-..=+..++..++...|++.|++++=+-..-. .. . ...+.++++.|-+++++..+++
T Consensus 69 ~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~---~~------~-----~~~~~~~~~~~n~~l~~~a~~~----- 129 (174)
T cd01841 69 SSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEE---DE------I-----KTRSNTRIQRLNDAIKELAPEL----- 129 (174)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcc---cc------c-----ccCCHHHHHHHHHHHHHHHHHC-----
Confidence 456677778889999999999999999874311100 00 1 1123578888999888876655
Q ss_pred ccccEEEeecCeeeecC
Q 017999 177 HINHYVFTDSDIAVVDD 193 (362)
Q Consensus 177 ~i~dfIFiDsDiaVvDd 193 (362)
.+.|+|......++
T Consensus 130 ---~~~~id~~~~~~~~ 143 (174)
T cd01841 130 ---GVTFIDLNDVLVDE 143 (174)
T ss_pred ---CCEEEEcHHHHcCC
Confidence 26778876655444
No 45
>PRK11204 N-glycosyltransferase; Provisional
Probab=43.92 E-value=83 Score=30.56 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=41.6
Q ss_pred HHHHHHHH-HhhCCCccEEEEeCCCCCCCCC--------CCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCC
Q 017999 105 LNVFINFI-QVTMPKSDVFILTDPASDLSMP--------RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQ 175 (362)
Q Consensus 105 l~~Fi~si-rvsmP~snVVILTD~~T~~sl~--------~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~ 175 (362)
+..-+.|+ +...|+.+|||+.|..++-+.. ..+++++..+++-.+.+ . +..-++.
T Consensus 69 i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~--a---------ln~g~~~----- 132 (420)
T PRK11204 69 VEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKAN--A---------LNTGAAA----- 132 (420)
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHH--H---------HHHHHHH-----
Confidence 33334444 5678988888887766654321 12467777654443311 1 1122221
Q ss_pred CccccEEEeecCeeeecC
Q 017999 176 GHINHYVFTDSDIAVVDD 193 (362)
Q Consensus 176 ~~i~dfIFiDsDiaVvDd 193 (362)
...+-++|+|+|.++-.|
T Consensus 133 a~~d~i~~lDaD~~~~~d 150 (420)
T PRK11204 133 ARSEYLVCIDGDALLDPD 150 (420)
T ss_pred cCCCEEEEECCCCCCChh
Confidence 134778999999988665
No 46
>PRK15384 type III secretion system protein; Provisional
Probab=42.87 E-value=27 Score=35.05 Aligned_cols=45 Identities=24% Similarity=0.480 Sum_probs=36.4
Q ss_pred ccEEEeecCeeeecCchhhhccCCCeeEEEe-eecCCCCcCcceEEEEe
Q 017999 179 NHYVFTDSDIAVVDDLGHIFHDYQNFHLALT-FRNNKDQPLNSGFIAVR 226 (362)
Q Consensus 179 ~dfIFiDsDiaVvDdLg~IFk~~PdFHvALT-fRnnkdqPiNSGfIfVR 226 (362)
+--|++|.||+++|.||-++- ||. +|+. -|++....+--|.|+|-
T Consensus 217 ~GCIYLDaDMilT~KLG~ly~--PDG-IavhV~r~~~~~slENg~I~Vn 262 (336)
T PRK15384 217 SGCIYLDADMIITEKLGGIYI--PDG-IAVHVERIDGRASMENGIIAVD 262 (336)
T ss_pred CceEEeeccceeecccccEEc--CCc-eEEEEEecCCceecccceEEEc
Confidence 456999999999999999874 454 5554 56777888999999995
No 47
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=42.63 E-value=2.1e+02 Score=27.00 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=22.2
Q ss_pred ecCeeeecCchhhhccCCCeeEEEeee
Q 017999 185 DSDIAVVDDLGHIFHDYQNFHLALTFR 211 (362)
Q Consensus 185 DsDiaVvDdLg~IFk~~PdFHvALTfR 211 (362)
|.|++..|.|.++-+.+++|++-+++.
T Consensus 160 ~~d~~~~del~~~~~~~~~~~~~~~~S 186 (267)
T cd06182 160 ASDYLYREELQEALKDGALTRLDVAFS 186 (267)
T ss_pred cccccHHHHHHHHHhCCCcceEEEEEc
Confidence 589999999999988888887777654
No 48
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=42.62 E-value=1e+02 Score=23.12 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=38.4
Q ss_pred HHHHHHhh-CCCccEEEEeCCCCCCCCCC--------CCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 017999 108 FINFIQVT-MPKSDVFILTDPASDLSMPR--------KGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHI 178 (362)
Q Consensus 108 Fi~sirvs-mP~snVVILTD~~T~~sl~~--------~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~i 178 (362)
-+.++... .+..+++|++|..++..... ..+..++-+++.....- + ...++.. ..
T Consensus 15 ~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~----------~~~~~~~-----~~ 78 (156)
T cd00761 15 CLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAA-R----------NAGLKAA-----RG 78 (156)
T ss_pred HHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHH-H----------HHHHHHh-----cC
Confidence 34444333 36778888888766543221 12344444444444111 1 1111111 45
Q ss_pred ccEEEeecCeeeecCch
Q 017999 179 NHYVFTDSDIAVVDDLG 195 (362)
Q Consensus 179 ~dfIFiDsDiaVvDdLg 195 (362)
..++++|+|..+..+.-
T Consensus 79 d~v~~~d~D~~~~~~~~ 95 (156)
T cd00761 79 EYILFLDADDLLLPDWL 95 (156)
T ss_pred CEEEEECCCCccCccHH
Confidence 67899999999876643
No 49
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.47 E-value=1.3e+02 Score=25.49 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHhhCCCccEEEEe
Q 017999 99 ERSMAILNVFINFIQVTMPKSDVFILT 125 (362)
Q Consensus 99 ~r~~avl~~Fi~sirvsmP~snVVILT 125 (362)
+.-..=+..++..||..+|++.|++++
T Consensus 87 ~~~~~~l~~li~~i~~~~~~~~iiv~~ 113 (191)
T cd01836 87 ARWRKQLAELVDALRAKFPGARVVVTA 113 (191)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 445566788899999889999999886
No 50
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=40.57 E-value=65 Score=34.53 Aligned_cols=127 Identities=18% Similarity=0.306 Sum_probs=73.2
Q ss_pred ccccccC-----cccceEecccccccchhhhHHHHHHHHHHHhhCCCc-cEEEEeCCCCCCCCCCC---CeEEEecCCcc
Q 017999 77 LQCQDSR-----ASNMVTVGNASYSKTERSMAILNVFINFIQVTMPKS-DVFILTDPASDLSMPRK---GVTIYPIHGEY 147 (362)
Q Consensus 77 lqc~~~~-----~~~~v~vg~~~y~k~~r~~avl~~Fi~sirvsmP~s-nVVILTD~~T~~sl~~~---r~~v~pi~g~Y 147 (362)
-||+... +.+.|.+ +|-.-.||+ .|++-.+-+.++=++- .=|||+|+.|+....++ ++.=+..=.|=
T Consensus 112 ~qC~~~~y~~dlp~TsviI---TfHNEARS~-LLRTv~SvlnrsP~~li~EiILVDD~S~Dped~~~L~ri~kvr~LRN~ 187 (559)
T KOG3738|consen 112 PQCRDVDYKVDLPPTSVII---TFHNEARST-LLRTVVSVLNRSPEHLIHEIILVDDFSQDPEDGKLLKRIPKVRVLRNN 187 (559)
T ss_pred cccccceeecCCCCceEEE---EeccHHHHH-HHHHHHHHHcCChHHhhheeEEecCCCCChHHHHHHhhhheeeeeccc
Confidence 3787665 3333333 455566776 4555556666666665 78999999999643332 23223333456
Q ss_pred CchhHHHHHHHHHH------------------HHHHHHHHHhccCCCcc-ccEEEeecCeeeecCchhhhcc---CCCee
Q 017999 148 SRDKLMLQRIRSYI------------------TFLERRIREHSQGQGHI-NHYVFTDSDIAVVDDLGHIFHD---YQNFH 205 (362)
Q Consensus 148 SR~~LmlQRi~sYi------------------~fLkT~i~e~~~~~~~i-~dfIFiDsDiaVvDdLg~IFk~---~PdFH 205 (362)
-|+-||..|+|-=. .||+-.|+..|++.+.+ +..| |+|=.|++.-+-.. --.||
T Consensus 188 ~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPii----DvIn~dnf~Y~~asadLrGGFD 263 (559)
T KOG3738|consen 188 EREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPII----DVINLDNFSYVGASADLRGGFD 263 (559)
T ss_pred chhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeeccc----ccccccccccccchhhhcCCcc
Confidence 78899999965321 57777787777664332 4433 33333443322111 23677
Q ss_pred EEEeee
Q 017999 206 LALTFR 211 (362)
Q Consensus 206 vALTfR 211 (362)
..|.|+
T Consensus 264 WsLhF~ 269 (559)
T KOG3738|consen 264 WSLHFK 269 (559)
T ss_pred eEEEEE
Confidence 777654
No 51
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.25 E-value=1.7e+02 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHhhCCCccEEEEeCCCC
Q 017999 101 SMAILNVFINFIQVTMPKSDVFILTDPAS 129 (362)
Q Consensus 101 ~~avl~~Fi~sirvsmP~snVVILTD~~T 129 (362)
-..=+..++.-||..+|++.|++++=+-+
T Consensus 76 ~~~~~~~~i~~i~~~~p~~~iil~~~~~~ 104 (177)
T cd01844 76 VRERLGPLVKGLRETHPDTPILLVSPRYC 104 (177)
T ss_pred HHHHHHHHHHHHHHHCcCCCEEEEecCCC
Confidence 34556778889999999999888775443
No 52
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=39.20 E-value=1.5e+02 Score=26.23 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=44.0
Q ss_pred chhhhHHHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCc
Q 017999 98 TERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGH 177 (362)
Q Consensus 98 ~~r~~avl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~ 177 (362)
.+.-.+=+..+|.-+|..+|+++|++++=+... +. .+-+.+++..|-+.+++...+
T Consensus 108 ~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~p~~------~~-----------~~~~~~~~~~~n~~l~~~~~~------- 163 (214)
T cd01820 108 AEEIAEGILAIVEEIREKLPNAKILLLGLLPRG------QN-----------PNPLRERNAQVNRLLAVRYDG------- 163 (214)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC------CC-----------chhHHHHHHHHHHHHHHHhcC-------
Confidence 555666788899999999999999998632111 00 111245666666666554332
Q ss_pred cccEEEeecCeeeecC
Q 017999 178 INHYVFTDSDIAVVDD 193 (362)
Q Consensus 178 i~dfIFiDsDiaVvDd 193 (362)
.....|+|...+..+.
T Consensus 164 ~~~v~~vd~~~~~~~~ 179 (214)
T cd01820 164 LPNVTFLDIDKGFVQS 179 (214)
T ss_pred CCCEEEEeCchhhccc
Confidence 2357888876655443
No 53
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=38.87 E-value=48 Score=33.24 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=48.8
Q ss_pred CCccEEEEeCCCCCCCCCC-----------CCeEEEecCCc-cCchhHHHHHHHHHHHHHHHHHHHhccCCCccccEEEe
Q 017999 117 PKSDVFILTDPASDLSMPR-----------KGVTIYPIHGE-YSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFT 184 (362)
Q Consensus 117 P~snVVILTD~~T~~sl~~-----------~r~~v~pi~g~-YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~i~dfIFi 184 (362)
.++--++.||..|..++.. +.=+++.+... |+ +.-|.+| |.-+|-+++ ...-.--|.|
T Consensus 90 ~~vcf~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~~lp~~-d~rr~~r---~~K~lpHrl------fp~y~ySIWI 159 (305)
T PF04765_consen 90 KNVCFFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVKNLPYD-DPRRNGR---IPKLLPHRL------FPNYDYSIWI 159 (305)
T ss_pred cCccEEEEEehhhHHHHHhcCCccccccccCceEEEEecCCCCc-chhhcCc---ccceecccc------CCCCceEEEE
Confidence 4677899999999654432 11155555322 33 3334444 222222221 1123455889
Q ss_pred ecCeeeecCchhhhccC---CCeeEEE
Q 017999 185 DSDIAVVDDLGHIFHDY---QNFHLAL 208 (362)
Q Consensus 185 DsDiaVvDdLg~IFk~~---PdFHvAL 208 (362)
|+=+-++.|...+.+.+ .+..+|+
T Consensus 160 D~ki~L~~Dp~~lie~~l~~~~~~~Ai 186 (305)
T PF04765_consen 160 DGKIQLIVDPLLLIERFLWRKNADIAI 186 (305)
T ss_pred eeeEEEecCHHHHHHHHHhcCCCcEEE
Confidence 99999999988888874 5677777
No 54
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=38.61 E-value=34 Score=35.80 Aligned_cols=126 Identities=18% Similarity=0.199 Sum_probs=65.8
Q ss_pred HHHHHhhCCCccEEEEeCCCCCCCCCCCCe---------EEEecC------CccCchhHHHHHHHHHH-----HHHHHHH
Q 017999 109 INFIQVTMPKSDVFILTDPASDLSMPRKGV---------TIYPIH------GEYSRDKLMLQRIRSYI-----TFLERRI 168 (362)
Q Consensus 109 i~sirvsmP~snVVILTD~~T~~sl~~~r~---------~v~pi~------g~YSR~~LmlQRi~sYi-----~fLkT~i 168 (362)
|+|+=.+||+.-|+||.- |-++.++... .+.++- -.+.-+..+++++++-. .+|.+-+
T Consensus 150 IESa~k~hP~~cv~vls~--t~ds~~~~s~~kp~~~~~lsv~~v~~~lp~llk~t~~e~~l~~~k~g~~~~~~~~l~~~l 227 (409)
T KOG1928|consen 150 IESAFKTHPEGCVVVLSK--TMDSPNGYSILKPFLDSGLSVIAVTPDLPFLLKDTPGETWLERWKDGRLDPGKIPLLQNL 227 (409)
T ss_pred hHHHHhhCCCceEEEEEc--cccCCCCccccccHhHhhhhhcccccCchhhHhhCccccHHHHHHhcccCCCcccchhhH
Confidence 588889999999999987 5555444432 233222 12233334455544322 1222211
Q ss_pred HHhccCCCcccc--EEEeecCeeeecCchhhhccCCCeeEEEeeecCCCCcCcceEE-EEeCCCCchhHHHHHHHHHHHH
Q 017999 169 REHSQGQGHINH--YVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFI-AVRGTPDGISRAKIFLEEVLRV 245 (362)
Q Consensus 169 ~e~~~~~~~i~d--fIFiDsDiaVvDdLg~IFk~~PdFHvALTfRnnkdqPiNSGfI-fVRgt~d~~~~A~~FLeeVlei 245 (362)
.++. .....=- =|+.|+|+||.-+|..+=+-.+ ++ =+ +...--+|.++. |=+ -|.|+-+-++-
T Consensus 228 Sdl~-RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig-~~--~~--~~~~~~lnnavl~F~k--------~Hpfl~~cl~e 293 (409)
T KOG1928|consen 228 SDLS-RLALLYKYGGVYLDTDVIVLKSLSNLRNVIG-VD--PA--TQAWTRLNNAVLIFDK--------NHPFLLECLRE 293 (409)
T ss_pred HHHH-HHHHHHHhCCEEeeccEEEeccccccccccc-cc--ch--hhHHHhhcCceeecCC--------CCHHHHHHHHH
Confidence 1110 0000000 1789999999999988876544 11 00 011223555543 334 45577777777
Q ss_pred HHHhh
Q 017999 246 YSSKY 250 (362)
Q Consensus 246 Y~sky 250 (362)
|..+|
T Consensus 294 F~~tf 298 (409)
T KOG1928|consen 294 FALTY 298 (409)
T ss_pred HHHhc
Confidence 77776
No 55
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=38.45 E-value=97 Score=32.77 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhccCCCccccEEEeecCeeeecCchhh-hccCCCeeEEEe------eecCCC-CcCcceEEEEeCCCCch
Q 017999 161 ITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHI-FHDYQNFHLALT------FRNNKD-QPLNSGFIAVRGTPDGI 232 (362)
Q Consensus 161 i~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~I-Fk~~PdFHvALT------fRnnkd-qPiNSGfIfVRgt~d~~ 232 (362)
+-+|.+.|.+| ...+-|-.+|+|++|+|---++ -+.+.+.|+-++ | ..++ .=+|.|+-++|-|.=
T Consensus 185 lpaLR~aM~~~----PeaEWiWWLDsDALImNmsfelPlery~~~NlVihg~~~~l~-~~kdW~GLNtGsFLIRNcqW-- 257 (429)
T PLN03182 185 LPLLRKLMLAH----PEVEWIWWMDSDALFTDMTFEIPLEKYEGYNLVIHGWDELVY-DQKSWIGLNTGSFLIRNCQW-- 257 (429)
T ss_pred HHHHHHHHHHC----CCceEEEEecCCceeecCCCCCCHhHcCCcCeeeccchhhhe-eccccCccceeeEEEEcCHH--
Confidence 46677777766 3467788899999999832221 112445554432 3 2333 459999999999887
Q ss_pred hHHHHHHHHHHHHHH-------------HhhhhHh--hhhcchhhhhHHhh
Q 017999 233 SRAKIFLEEVLRVYS-------------SKYMNAS--RMLGDQLALAWVVK 268 (362)
Q Consensus 233 ~~A~~FLeeVleiY~-------------sky~~as--~mlGDQlALa~~vk 268 (362)
+..||..|..-=+ ++ ++.+ --..||.||.+..-
T Consensus 258 --SldlLDaWa~mgp~~~~~~~~g~~l~~~-l~~rp~~eaDDQSAlvyLl~ 305 (429)
T PLN03182 258 --SLDLLDAWAPMGPKGPIRDEAGKILTAE-LKGRPAFEADDQSALVYLLL 305 (429)
T ss_pred --HHHHHHHHHhcCCCCchhhhHHHHHHHh-hcCCCCCCcccHHHHHHHHH
Confidence 8889888654221 11 1111 12579999999984
No 56
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.26 E-value=1.8e+02 Score=24.17 Aligned_cols=75 Identities=12% Similarity=0.134 Sum_probs=45.0
Q ss_pred chhhhHHHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCc
Q 017999 98 TERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGH 177 (362)
Q Consensus 98 ~~r~~avl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~ 177 (362)
.+....=+..++..+|...|++.||++|=+-..... . +-| -.....++++.|.++|++-.++.
T Consensus 84 ~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~-~------~~~----~~~~~~~~~~~~n~~l~~~a~~~------ 146 (191)
T cd01834 84 LEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANE-D------PLP----DGAEYNANLAAYADAVRELAAEN------ 146 (191)
T ss_pred HHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCC-C------CCC----ChHHHHHHHHHHHHHHHHHHHHc------
Confidence 455556677788888878999998888633221110 0 001 12345667777888887764433
Q ss_pred cccEEEeecCeeee
Q 017999 178 INHYVFTDSDIAVV 191 (362)
Q Consensus 178 i~dfIFiDsDiaVv 191 (362)
+..|+|...+..
T Consensus 147 --~~~~iD~~~~~~ 158 (191)
T cd01834 147 --GVAFVDLFTPMK 158 (191)
T ss_pred --CCeEEecHHHHH
Confidence 467777655543
No 57
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=38.01 E-value=1.9e+02 Score=22.30 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhCCCccEEEEeCCCCCCCCC---C--CCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCc
Q 017999 103 AILNVFINFIQVTMPKSDVFILTDPASDLSMP---R--KGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGH 177 (362)
Q Consensus 103 avl~~Fi~sirvsmP~snVVILTD~~T~~sl~---~--~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~ 177 (362)
++|-.||..-+.. +.+=+++.|++|..... . ..+.+.+.+..+..+. .| ..+++..++.. ..
T Consensus 5 ~~L~~wl~~~~~l--G~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~~~~~~~--~~-----~~~~~~~~~~~----~~ 71 (97)
T PF13704_consen 5 DYLPEWLAHHLAL--GVDHIYIYDDGSTDGTREILRALPGVGIIRWVDPYRDER--RQ-----RAWRNALIERA----FD 71 (97)
T ss_pred HHHHHHHHHHHHc--CCCEEEEEECCCCccHHHHHHhCCCcEEEEeCCCccchH--HH-----HHHHHHHHHhC----CC
Confidence 4566666666433 45544445555543221 1 3478888877774311 11 22333333322 24
Q ss_pred cccEEEeecCeeeecC
Q 017999 178 INHYVFTDSDIAVVDD 193 (362)
Q Consensus 178 i~dfIFiDsDiaVvDd 193 (362)
..-.+|+|+|=.++-+
T Consensus 72 ~dWvl~~D~DEfl~~~ 87 (97)
T PF13704_consen 72 ADWVLFLDADEFLVPP 87 (97)
T ss_pred CCEEEEEeeeEEEecC
Confidence 5778899999766543
No 58
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=37.44 E-value=2.2e+02 Score=23.62 Aligned_cols=79 Identities=6% Similarity=0.149 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhCCCccEEEEeCCCCCCC-CC--------CCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccC
Q 017999 104 ILNVFINFIQVTMPKSDVFILTDPASDLS-MP--------RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQG 174 (362)
Q Consensus 104 vl~~Fi~sirvsmP~snVVILTD~~T~~s-l~--------~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~ 174 (362)
.|.++...+..+.+...|||+ |++|... .. ..++.++....++..++-+ ..-+++-
T Consensus 15 ~l~sl~~~~~~~~~~~eiivv-dd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~-----------n~g~~~a--- 79 (181)
T cd04187 15 LYERLKAVLESLGYDYEIIFV-DDGSTDRTLEILRELAARDPRVKVIRLSRNFGQQAAL-----------LAGLDHA--- 79 (181)
T ss_pred HHHHHHHHHHhcCCCeEEEEE-eCCCCccHHHHHHHHHhhCCCEEEEEecCCCCcHHHH-----------HHHHHhc---
Confidence 444444444444666776665 5555432 11 1246676666555552222 1222222
Q ss_pred CCccccEEEeecCeeeecC-chhhhc
Q 017999 175 QGHINHYVFTDSDIAVVDD-LGHIFH 199 (362)
Q Consensus 175 ~~~i~dfIFiDsDiaVvDd-Lg~IFk 199 (362)
...-++|+|.|.....+ |..+.+
T Consensus 80 --~~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 80 --RGDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred --CCCEEEEEeCCCCCCHHHHHHHHH
Confidence 22668899999987544 555554
No 59
>PF13358 DDE_3: DDE superfamily endonuclease
Probab=37.19 E-value=41 Score=26.55 Aligned_cols=59 Identities=27% Similarity=0.497 Sum_probs=43.7
Q ss_pred HHHHHHhhCCCc-cEEEEeCCCCCC-------CCCC--CCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHH
Q 017999 108 FINFIQVTMPKS-DVFILTDPASDL-------SMPR--KGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIRE 170 (362)
Q Consensus 108 Fi~sirvsmP~s-nVVILTD~~T~~-------sl~~--~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e 170 (362)
|+..+....++. +++++.|+++-= -+.. .++.+...| .||.+ +++|..+-.+||..+..
T Consensus 68 ~l~~~~~~~~~~~~~~li~DNa~~H~~~~~~~~l~~~~~~~~~~~~P-~~sPd---LNpiE~~w~~lk~~~~~ 136 (146)
T PF13358_consen 68 FLEQLLRPYPRKGRIVLIMDNASIHKSKKVQEWLEEHERGIELLFLP-PYSPD---LNPIENVWGYLKRRIRR 136 (146)
T ss_pred cccccccccccceEEEEecccccccccccccceeecccccccccccc-CcCCc---cCHHHHHHHHHHHHHHh
Confidence 555555566666 999999998632 1222 567888887 67773 99999999999999886
No 60
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=37.10 E-value=92 Score=35.75 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=50.4
Q ss_pred EEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhccCCCeeEEEeeecCCCCcC
Q 017999 139 TIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPL 218 (362)
Q Consensus 139 ~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~~PdFHvALTfRnnkdqPi 218 (362)
..+..|.+.+. -|| +..+..-++++ .+..-+- +|.+|-.+-++=-..-||+|+.+|.|-..+.
T Consensus 88 ~~iALP~EL~~----eq~----~~L~~~f~~~~-----~~~~G~~--ad~aiH~~~~~dg~~NpHaHim~T~R~~~~~-- 150 (988)
T PRK13889 88 VEFAIPREMTQ----AQG----IELARDFVQAE-----FVDRGMI--ADLNVHWDIGEDGMAKPHAHVMLTMRAVDEN-- 150 (988)
T ss_pred eeEeCchhcCH----HHH----HHHHHHHHHHH-----HhcCCce--EEEEeecccccCCCCCCeEEEEeccCccCCC--
Confidence 77889999999 888 44444443333 1111111 3666665443222246999999998854332
Q ss_pred cceEEEEeCCCCchhHHHHHHHHHHHHHH
Q 017999 219 NSGFIAVRGTPDGISRAKIFLEEVLRVYS 247 (362)
Q Consensus 219 NSGfIfVRgt~d~~~~A~~FLeeVleiY~ 247 (362)
|| =..+++ -..++++++|-+.|-
T Consensus 151 --G~--g~K~r~--w~~~~~l~~~R~~Wa 173 (988)
T PRK13889 151 --GF--GAKVRD--WNRTELVERWRERWA 173 (988)
T ss_pred --CC--CCcccc--cCCHHHHHHHHHHHH
Confidence 31 122222 235689999999994
No 61
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=37.06 E-value=97 Score=27.98 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.0
Q ss_pred cccEEEeecCeeeecC
Q 017999 178 INHYVFTDSDIAVVDD 193 (362)
Q Consensus 178 i~dfIFiDsDiaVvDd 193 (362)
-+=++|+|+|+++-.|
T Consensus 74 ~e~i~~~DaD~~~~~~ 89 (244)
T cd04190 74 PEFILLVDADTKFDPD 89 (244)
T ss_pred CCEEEEECCCCcCCHh
Confidence 3557899999999777
No 62
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=36.78 E-value=1.1e+02 Score=29.74 Aligned_cols=17 Identities=41% Similarity=0.476 Sum_probs=13.4
Q ss_pred ccccEEEeecCeeeecC
Q 017999 177 HINHYVFTDSDIAVVDD 193 (362)
Q Consensus 177 ~i~dfIFiDsDiaVvDd 193 (362)
.-+-++|+|+|+.+-.|
T Consensus 126 ~ge~i~~~DaD~~~~p~ 142 (373)
T TIGR03472 126 RHDILVIADSDISVGPD 142 (373)
T ss_pred cCCEEEEECCCCCcChh
Confidence 44678999999988654
No 63
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=36.30 E-value=89 Score=29.14 Aligned_cols=43 Identities=9% Similarity=0.059 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCC-Ce-EEEecCC
Q 017999 103 AILNVFINFIQVTMPKSDVFILTDPASDLSMPRK-GV-TIYPIHG 145 (362)
Q Consensus 103 avl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~-r~-~v~pi~g 145 (362)
-...-++..||..+|++++.+||.+.+.--+... .+ .+++++.
T Consensus 14 vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~~ 58 (319)
T TIGR02193 14 IHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVAL 58 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEech
Confidence 3456788999999999999999998886544432 24 4666653
No 64
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=35.28 E-value=2.2e+02 Score=28.58 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=15.8
Q ss_pred cceEEEEeecccccCCCCCCCC
Q 017999 289 IGASVLFLPCATYNWTPPEGAG 310 (362)
Q Consensus 289 ~g~sVlfLPC~~YNwtppegaG 310 (362)
.|.+|.+.|=++.-..|||.-.
T Consensus 252 ~g~kv~~~~~a~~~~~~p~t~~ 273 (439)
T TIGR03111 252 LDGKVYLCENAIFYVDPIDGLN 273 (439)
T ss_pred cCCeEEECCCCEEEEECCcCHH
Confidence 5778888887777666776543
No 65
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=35.01 E-value=1.3e+02 Score=35.10 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=34.1
Q ss_pred eEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhccCCCeeEEEeee
Q 017999 138 VTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFR 211 (362)
Q Consensus 138 ~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~~PdFHvALTfR 211 (362)
-.++..|.+.|+ -|| +..+..-++++....+.+- |++|-|+ ..-||.|+.+|.|
T Consensus 97 E~~iALP~EL~~----eq~----i~Lvr~fv~~~~~~~Gm~a-------D~aiHd~-----~~NpHaHim~T~R 150 (1102)
T PRK13826 97 DVTIALPLELTA----EQN----IALVRDFVEKHILAKGMVA-------DWVYHDA-----PGNPHVHLMTTLR 150 (1102)
T ss_pred eeeEeCccccCH----HHH----HHHHHHHHHHHHHhCCCeE-------EEEeecC-----CCCCeeeeeeccc
Confidence 377889999999 788 5444444444421112222 4444443 4589999999987
No 66
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=34.58 E-value=37 Score=26.28 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=25.5
Q ss_pred cceEEEEeCCCCchhH--HHHHHHHHHHHHHHhh
Q 017999 219 NSGFIAVRGTPDGISR--AKIFLEEVLRVYSSKY 250 (362)
Q Consensus 219 NSGfIfVRgt~d~~~~--A~~FLeeVleiY~sky 250 (362)
+.|++++.=|.+.+.+ |-.||+++.+.|.++|
T Consensus 31 ~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~ 64 (83)
T PF13774_consen 31 EDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTY 64 (83)
T ss_dssp ETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHC
T ss_pred cCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHc
Confidence 5778777777776666 7789999999999998
No 67
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=33.94 E-value=64 Score=31.38 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=23.9
Q ss_pred ccceeee-c--ccCCCCCCCcccccccC--cccceEecccccccch
Q 017999 59 KFDHLIL-G--PAAGQRLPNRLQCQDSR--ASNMVTVGNASYSKTE 99 (362)
Q Consensus 59 ~~~~~~~-~--~aag~g~~~rlqc~~~~--~~~~v~vg~~~y~k~~ 99 (362)
+.|.+|. | +++|-|+| .-..+.++ --|.+|+|||+++|.|
T Consensus 30 ~~D~vIaNgEn~~gG~Gi~-~~~~~~L~~~GvDviT~GNH~~Dkge 74 (266)
T TIGR00282 30 QADLVIANGENTTHGKGLT-LKIYEFLKQSGVNYITMGNHTWFQKL 74 (266)
T ss_pred CCCEEEEcCcccCCCCCCC-HHHHHHHHhcCCCEEEccchhccCcH
Confidence 4565554 2 23344564 22222222 3499999999999997
No 68
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=33.87 E-value=32 Score=31.18 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 017999 150 DKLMLQRIRSYITFLERRI 168 (362)
Q Consensus 150 ~~LmlQRi~sYi~fLkT~i 168 (362)
+|||. .-+.||+||+++|
T Consensus 122 gnLMQ-AAAeYIewLE~ql 139 (140)
T PF10465_consen 122 GNLMQ-AAAEYIEWLETQL 139 (140)
T ss_pred hhHHH-HHHHHHHHHHhhc
Confidence 57885 4599999999986
No 69
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=33.40 E-value=2e+02 Score=24.87 Aligned_cols=28 Identities=11% Similarity=0.341 Sum_probs=16.7
Q ss_pred HHHHHHHH-HhhCCCccEEEEeCCCCCCC
Q 017999 105 LNVFINFI-QVTMPKSDVFILTDPASDLS 132 (362)
Q Consensus 105 l~~Fi~si-rvsmP~snVVILTD~~T~~s 132 (362)
|..-+.|+ +...|+.+|||.-|..|+-+
T Consensus 14 l~~~l~sl~~q~~~~~eiiVvdd~s~D~t 42 (236)
T cd06435 14 VKETLDSLAALDYPNFEVIVIDNNTKDEA 42 (236)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeCCCCchh
Confidence 44444555 34458888877766666554
No 70
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=33.21 E-value=1.6e+02 Score=24.58 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=13.9
Q ss_pred ccceEEEEeecccccCC
Q 017999 288 IIGASVLFLPCATYNWT 304 (362)
Q Consensus 288 v~g~sVlfLPC~~YNwt 304 (362)
-.|.++.++|=++|+|.
T Consensus 185 ~~g~~~~~~~~~~~~~r 201 (202)
T cd04184 185 EHTDRIAHIPRVLYHWR 201 (202)
T ss_pred hccceEEEccHhhhhhc
Confidence 34889999999999885
No 71
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=31.31 E-value=2.1e+02 Score=24.12 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=13.6
Q ss_pred ccccEEEeecCeeeecCc
Q 017999 177 HINHYVFTDSDIAVVDDL 194 (362)
Q Consensus 177 ~i~dfIFiDsDiaVvDdL 194 (362)
.-+.++|+|+|..+..+.
T Consensus 81 ~~d~v~~~DaD~~~~p~~ 98 (183)
T cd06438 81 DPDAVVVFDADNLVDPNA 98 (183)
T ss_pred CCCEEEEEcCCCCCChhH
Confidence 345688999999987553
No 72
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=31.27 E-value=44 Score=31.74 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=29.4
Q ss_pred ccccEEEeecCeeeecCchhhhccCCCeeEEEeeecCCCCcCcceEEEEe
Q 017999 177 HINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQPLNSGFIAVR 226 (362)
Q Consensus 177 ~i~dfIFiDsDiaVvDdLg~IFk~~PdFHvALTfRnnkdqPiNSGfIfVR 226 (362)
.-+.+||+|+|.+..-|...+|+. +..-..|.+|-|
T Consensus 90 sFeevllLDaD~vpl~~p~~lF~~--------------~~yk~tG~lfw~ 125 (271)
T PF11051_consen 90 SFEEVLLLDADNVPLVDPEKLFES--------------EEYKKTGALFWR 125 (271)
T ss_pred CcceEEEEcCCcccccCHHHHhcC--------------ccccccCEEEEC
Confidence 457899999999999999999984 233467888884
No 73
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=30.97 E-value=1.4e+02 Score=29.85 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHhhCCCccEEEEeCCCCCCCCC--------CCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCccccE
Q 017999 110 NFIQVTMPKSDVFILTDPASDLSMP--------RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHY 181 (362)
Q Consensus 110 ~sirvsmP~snVVILTD~~T~~sl~--------~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~i~df 181 (362)
+.++...|+-+|||+.|..++.+.. ..++.+++.+++-.+.+- ++.-++. ..-+.+
T Consensus 96 sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~A-----------lN~gl~~-----a~~d~i 159 (444)
T PRK14583 96 AALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIA-----------LRMGAAA-----ARSEYL 159 (444)
T ss_pred HHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHH-----------HHHHHHh-----CCCCEE
Confidence 3346678998988887766654322 125677776544333111 1111221 144778
Q ss_pred EEeecCeeeecC
Q 017999 182 VFTDSDIAVVDD 193 (362)
Q Consensus 182 IFiDsDiaVvDd 193 (362)
+++|+|.+.-.|
T Consensus 160 v~lDAD~~~~~d 171 (444)
T PRK14583 160 VCIDGDALLDKN 171 (444)
T ss_pred EEECCCCCcCHH
Confidence 999999997655
No 74
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=30.64 E-value=1.8e+02 Score=22.92 Aligned_cols=65 Identities=11% Similarity=0.228 Sum_probs=36.8
Q ss_pred HhhCCCccEEEEe--CCCC------C-CCCCCCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCccccEEE
Q 017999 113 QVTMPKSDVFILT--DPAS------D-LSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVF 183 (362)
Q Consensus 113 rvsmP~snVVILT--D~~T------~-~sl~~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~i~dfIF 183 (362)
+..+|+++=||.. .=.+ . ..-..+++.-|---.+|-+ .|.+|++.-.+||+.+.. ..+--+|
T Consensus 5 ~~~~p~arSvIv~a~~Y~~~~~~~~~~~~~~~g~iarYA~G~DYH~--vlk~~L~~l~~~i~~~~~-------~~~~r~~ 75 (78)
T PF08331_consen 5 RKLLPGARSVIVLAFPYYPEPPPPPPPPGPGRGRIARYAWGRDYHK--VLKKKLEQLAEWIRELGP-------DFEYRIF 75 (78)
T ss_pred HHhCCCCcEEEEEEccCCCccccccccCCCCCeeEeehhccCChHH--HHHHHHHHHHHHHHHHCC-------CCCeEEe
Confidence 5678888544433 2222 1 1122344555555566666 888887777777777754 2245566
Q ss_pred eec
Q 017999 184 TDS 186 (362)
Q Consensus 184 iDs 186 (362)
.|+
T Consensus 76 VDT 78 (78)
T PF08331_consen 76 VDT 78 (78)
T ss_pred ecC
Confidence 664
No 75
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=30.54 E-value=12 Score=38.20 Aligned_cols=48 Identities=29% Similarity=0.314 Sum_probs=33.8
Q ss_pred EEEeecCeeeecCch----hhhccCCCeeEEE---e--eecCCCCcCcceEEEEeCCCC
Q 017999 181 YVFTDSDIAVVDDLG----HIFHDYQNFHLAL---T--FRNNKDQPLNSGFIAVRGTPD 230 (362)
Q Consensus 181 fIFiDsDiaVvDdLg----~IFk~~PdFHvAL---T--fRnnkdqPiNSGfIfVRgt~d 230 (362)
.++||-|.+..+|-. +.+.+ |.+.-. | |.|.-=+|+..|-.||||=|-
T Consensus 97 ivsiDDD~~Pa~d~~g~~i~~~~q--H~~NL~~pstp~~fNtLYdp~r~g~~fvRGYPf 153 (346)
T PLN03180 97 IFTIDDDCFVAKDPSGKLINALEQ--HIKNLLSPSTPFFFNTLYDPYREGADFVRGYPF 153 (346)
T ss_pred EEEECCCCCCCCCCccccccHHHH--HHHhcCCCCCCceeecccccCccCCcccCCCCc
Confidence 578999999999954 34444 222222 2 556666889999999999885
No 76
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=29.54 E-value=2.1e+02 Score=21.94 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=13.7
Q ss_pred ccccEEEeecCeeeecC
Q 017999 177 HINHYVFTDSDIAVVDD 193 (362)
Q Consensus 177 ~i~dfIFiDsDiaVvDd 193 (362)
....++|+|+|..+..+
T Consensus 78 ~~~~i~~~D~D~~~~~~ 94 (180)
T cd06423 78 KGDIVVVLDADTILEPD 94 (180)
T ss_pred CCCEEEEECCCCCcChH
Confidence 34568999999998776
No 77
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=29.21 E-value=2.8e+02 Score=23.97 Aligned_cols=130 Identities=15% Similarity=0.126 Sum_probs=62.9
Q ss_pred ccceEecccccccchhhhHHHHHHHHHHHhhCCCccEEEE-----eCCCCCCCCCCCCeEEEecCCccCchhHHHHHHHH
Q 017999 85 SNMVTVGNASYSKTERSMAILNVFINFIQVTMPKSDVFIL-----TDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRS 159 (362)
Q Consensus 85 ~~~v~vg~~~y~k~~r~~avl~~Fi~sirvsmP~snVVIL-----TD~~T~~sl~~~r~~v~pi~g~YSR~~LmlQRi~s 159 (362)
.-.++.|||-+....... +...+..++.++ ++..........++.++-+| |.+.....+
T Consensus 78 ~v~~~~GNHD~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~--~~~~~~~~~---- 141 (223)
T cd00840 78 PVFIIAGNHDSPSRLGAL----------SPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLP--YLRRSRLRD---- 141 (223)
T ss_pred CEEEecCCCCCccccccc----------cchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECC--CCCHHHHHH----
Confidence 346789999987654321 122234555554 22322334456678999998 666333222
Q ss_pred HHHHHHHHHHHhccCCCc--cccEEEeecCeee----ecCchhhhccCCCeeEEEe--eecCCCCcCcceEEEEeCCCCc
Q 017999 160 YITFLERRIREHSQGQGH--INHYVFTDSDIAV----VDDLGHIFHDYQNFHLALT--FRNNKDQPLNSGFIAVRGTPDG 231 (362)
Q Consensus 160 Yi~fLkT~i~e~~~~~~~--i~dfIFiDsDiaV----vDdLg~IFk~~PdFHvALT--fRnnkdqPiNSGfIfVRgt~d~ 231 (362)
....++...++...+.-. +.|--+..+..-- ...+..+... ++++.+. +-..+........++..|++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~~~~~~~~~~~~~~~~--~~d~v~~GH~H~~~~~~~~~~~~~ypGS~~~ 219 (223)
T cd00840 142 LLADAELRPRPLDPDDFNILLLHGGVAGAGPSDSERAPFVPEALLPA--GFDYVALGHIHRPQIILGGGPPIVYPGSPEG 219 (223)
T ss_pred HHHHHHHHhhccCCCCcEEEEEeeeeecCCCCcccccccCcHhhcCc--CCCEEECCCcccCeeecCCCceEEeCCCccc
Confidence 233333333322111111 1222222111000 1234445444 5666663 3333333566788888999875
Q ss_pred h
Q 017999 232 I 232 (362)
Q Consensus 232 ~ 232 (362)
+
T Consensus 220 ~ 220 (223)
T cd00840 220 L 220 (223)
T ss_pred c
Confidence 4
No 78
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=29.17 E-value=1.7e+02 Score=26.89 Aligned_cols=42 Identities=10% Similarity=0.182 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCC-Ce-EEEecCC
Q 017999 104 ILNVFINFIQVTMPKSDVFILTDPASDLSMPRK-GV-TIYPIHG 145 (362)
Q Consensus 104 vl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~-r~-~v~pi~g 145 (362)
....++..||..+|++++.+||++.+..-+... .+ .+.+++.
T Consensus 15 ~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~ 58 (279)
T cd03789 15 LATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPK 58 (279)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCC
Confidence 445678899999999999999999765433322 23 5566653
No 79
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=29.12 E-value=1.4e+02 Score=26.35 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=50.6
Q ss_pred hhhhHHHHHHHHHHHhhCCCccEEEEeCCCC--CCC----CC-----CCCeEEEecCCccCchhHHHHHHHHHHHHHHHH
Q 017999 99 ERSMAILNVFINFIQVTMPKSDVFILTDPAS--DLS----MP-----RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERR 167 (362)
Q Consensus 99 ~r~~avl~~Fi~sirvsmP~snVVILTD~~T--~~s----l~-----~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~ 167 (362)
||-+||-++..........+..++-+.-... +-. +. -+++...++.++|.. |- .+..+..+|+.+.
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~n--lt-~K~~~~~~w~~~~ 77 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRN--LT-LKTLAGLKWASKH 77 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccch--hh-HHHHHHHHHHHhh
Confidence 4556777776665554445665555554433 111 11 256889999988865 43 3444555666543
Q ss_pred HHHhccCCCccccEEEeecCeeee
Q 017999 168 IREHSQGQGHINHYVFTDSDIAVV 191 (362)
Q Consensus 168 i~e~~~~~~~i~dfIFiDsDiaVv 191 (362)
- ....-++++|-|+.|.
T Consensus 78 c-------~~~~~v~k~DDD~~vn 94 (195)
T PF01762_consen 78 C-------PNAKYVLKVDDDVFVN 94 (195)
T ss_pred C-------CchhheeecCcEEEEe
Confidence 2 2467899999999884
No 80
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=28.06 E-value=1.8e+02 Score=27.24 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=30.8
Q ss_pred eEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCccccEEEeecCeeeecCchhhhccCCCeeEEEeeec
Q 017999 138 VTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTDSDIAVVDDLGHIFHDYQNFHLALTFRN 212 (362)
Q Consensus 138 ~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~i~dfIFiDsDiaVvDdLg~IFk~~PdFHvALTfRn 212 (362)
-.++..|.+.+. -|+ ++.++.-++++....+..-| .+|-+| -..-||.|+.+|.|.
T Consensus 70 e~~iALP~EL~~----eq~----~~L~~~f~~~~~~~~G~~~d-------~aIH~d----~~~NpHaHim~t~R~ 125 (216)
T PF03389_consen 70 EFEIALPRELTL----EQN----IELVREFAQENFVDYGMAAD-------VAIHDD----GPRNPHAHIMFTTRP 125 (216)
T ss_dssp EEEEE--TTS-H----HHH----HHHHHHHHHHHHTTTT--EE-------EEEEEE----TTTEEEEEEEE--B-
T ss_pred eeeeeCCccCCH----HHH----HHHHHHHHHHHhhccceEEE-------EEEecC----CCCCCEEEEEeecCc
Confidence 377888999999 888 66776666665333333333 344431 125789999998763
No 81
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.01 E-value=82 Score=23.74 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.4
Q ss_pred HHHHHHHhhCCCccEEEEeCCCCC
Q 017999 107 VFINFIQVTMPKSDVFILTDPASD 130 (362)
Q Consensus 107 ~Fi~sirvsmP~snVVILTD~~T~ 130 (362)
.++..||..+|+..+|++|+..+.
T Consensus 60 ~~~~~i~~~~~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 60 ELLEQIRQINPSIPIIVVTDEDDS 83 (112)
T ss_dssp HHHHHHHHHTTTSEEEEEESSTSH
T ss_pred ccccccccccccccEEEecCCCCH
Confidence 456788999999999999988774
No 82
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=27.92 E-value=34 Score=27.02 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=8.4
Q ss_pred CCccccCccceeeecccCC
Q 017999 52 LPRKNRQKFDHLILGPAAG 70 (362)
Q Consensus 52 ~~~~~~~~~~~~~~~~aag 70 (362)
+.++-++|-=+|.||||-|
T Consensus 34 ~sp~~r~KWCRLNlGPawG 52 (56)
T PF08138_consen 34 PSPNDRDKWCRLNLGPAWG 52 (56)
T ss_dssp SS-STTSS--SS---TT-S
T ss_pred CCCCcHHHhhhhccCcccc
Confidence 3444567888999999965
No 83
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=27.55 E-value=2.7e+02 Score=24.02 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHHHHHhhCCCccEEEEe
Q 017999 99 ERSMAILNVFINFIQVTMPKSDVFILT 125 (362)
Q Consensus 99 ~r~~avl~~Fi~sirvsmP~snVVILT 125 (362)
++.-.=|..+|..||..+|++.||+++
T Consensus 102 ~~~~~~l~~~i~~ir~~~p~~~Ivv~~ 128 (204)
T cd04506 102 ETYQNNLKKIFKEIRKLNPDAPIFLVG 128 (204)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 344456889999999999999988875
No 84
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=26.94 E-value=42 Score=34.11 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=52.5
Q ss_pred cccceEecccccccchhhhHHHHH--HHHHH-HhhCCCccEEEEeCCCCCCCCCCCCeEEEecCCccCchhHHHHHHHHH
Q 017999 84 ASNMVTVGNASYSKTERSMAILNV--FINFI-QVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSY 160 (362)
Q Consensus 84 ~~~~v~vg~~~y~k~~r~~avl~~--Fi~si-rvsmP~snVVILTD~~T~~sl~~~r~~v~pi~g~YSR~~LmlQRi~sY 160 (362)
-.+.+|+..-+=+++...|+|++. -+.-+ +++-=.|+|.+|||++...+.. +.+- + .|
T Consensus 117 ~~~~ltInkGs~dGV~~gmpVI~~~GLVGrV~~Vs~~sSrVlLITD~~~~vsv~-----~~r~-----g----~~----- 177 (337)
T PRK14872 117 WGSSCWINVGKRQGIKKNSPVLSGKVLVGLVDYVGEHQSRVRLITDVGMKPSVM-----AVRG-----G----IQ----- 177 (337)
T ss_pred cceEEEEccccccCCCCCCeEEeCCCCEEEEEEECCCeEEEEEEEcCCccceEE-----Eecc-----C----cc-----
Confidence 346677777777777778877653 11122 3444456999999998776632 2221 1 12
Q ss_pred HHHHHHHHHHhccCCCccccEEEeecCe
Q 017999 161 ITFLERRIREHSQGQGHINHYVFTDSDI 188 (362)
Q Consensus 161 i~fLkT~i~e~~~~~~~i~dfIFiDsDi 188 (362)
-.|+|.+|+.++.+.+...+-.+.|.|-
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (337)
T PRK14872 178 TWVVKDQLRTLARQVERLPTSYILEKDK 205 (337)
T ss_pred ccccccchhhhhhhcccccccccccccc
Confidence 2466666777766666666666777664
No 85
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=26.66 E-value=1.3e+02 Score=28.24 Aligned_cols=30 Identities=7% Similarity=-0.043 Sum_probs=24.1
Q ss_pred hHHHH-HHHHHHHhhCCCccEEEEeCCCCCC
Q 017999 102 MAILN-VFINFIQVTMPKSDVFILTDPASDL 131 (362)
Q Consensus 102 ~avl~-~Fi~sirvsmP~snVVILTD~~T~~ 131 (362)
..|+. ..+..||..+|++++.+||.+.+.-
T Consensus 13 D~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~ 43 (322)
T PRK10964 13 DVLHTLPALTDAQQAIPGIQFDWVVEEGFAQ 43 (322)
T ss_pred HHHhHHHHHHHHHHhCCCCEEEEEECHHHHH
Confidence 34444 5677899999999999999998764
No 86
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=26.59 E-value=2.9e+02 Score=25.12 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhCCCccEEEEeCCCCCCC--C----C-CCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCC
Q 017999 103 AILNVFINFIQVTMPKSDVFILTDPASDLS--M----P-RKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQ 175 (362)
Q Consensus 103 avl~~Fi~sirvsmP~snVVILTD~~T~~s--l----~-~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~ 175 (362)
..|.-.|.||... ..-||+.|++|..+ + . ..++++++-+.+..- -.=.+ .=++...+
T Consensus 8 ~~l~~~l~sl~~q---~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~N~G~-----a~a~N--~Gi~~a~~------ 71 (281)
T TIGR01556 8 EHLGELITSLPKQ---VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGDNQGI-----AGAQN--QGLDASFR------ 71 (281)
T ss_pred HHHHHHHHHHHhc---CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCCCcch-----HHHHH--HHHHHHHH------
Confidence 3444455666432 34688889886432 1 1 135778777654433 11000 01111111
Q ss_pred CccccEEEeecCeeeecC
Q 017999 176 GHINHYVFTDSDIAVVDD 193 (362)
Q Consensus 176 ~~i~dfIFiDsDiaVvDd 193 (362)
...+.++|+|.|..+-++
T Consensus 72 ~~~d~i~~lD~D~~~~~~ 89 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNA 89 (281)
T ss_pred CCCCEEEEECCCCCCCHH
Confidence 134778899999998543
No 87
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=25.93 E-value=4e+02 Score=22.34 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=39.5
Q ss_pred chhhhHHHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCc
Q 017999 98 TERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGH 177 (362)
Q Consensus 98 ~~r~~avl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~ 177 (362)
.++-..-+..+|.-|| .|+++||++|=+... + +..+.+ .+.+++..|.+.|++..+++
T Consensus 87 ~~~~~~~~~~~i~~i~--~~~~~vil~~~~~~~-~-----------~~~~~~--~~~~~~~~~n~~l~~~a~~~------ 144 (185)
T cd01832 87 PDTYRADLEEAVRRLR--AAGARVVVFTIPDPA-V-----------LEPFRR--RVRARLAAYNAVIRAVAARY------ 144 (185)
T ss_pred HHHHHHHHHHHHHHHH--hCCCEEEEecCCCcc-c-----------cchhHH--HHHHHHHHHHHHHHHHHHHc------
Confidence 4556667788899998 799999998865440 0 001111 23455666666666654433
Q ss_pred cccEEEeec
Q 017999 178 INHYVFTDS 186 (362)
Q Consensus 178 i~dfIFiDs 186 (362)
.+.|+|.
T Consensus 145 --~v~~vd~ 151 (185)
T cd01832 145 --GAVHVDL 151 (185)
T ss_pred --CCEEEec
Confidence 4667764
No 88
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=25.63 E-value=43 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=20.1
Q ss_pred CCCCCC-CcccccccCcccceEeccccccc
Q 017999 69 AGQRLP-NRLQCQDSRASNMVTVGNASYSK 97 (362)
Q Consensus 69 ag~g~~-~rlqc~~~~~~~~v~vg~~~y~k 97 (362)
||+|.| ||+|+....+..-|-|-..|-++
T Consensus 9 ~Geg~pFD~lQ~s~l~~gtPv~i~H~S~D~ 38 (54)
T PF12913_consen 9 AGEGYPFDYLQNSALHPGTPVYILHTSRDG 38 (54)
T ss_dssp TTTSTT--TTEEEEE-TT-EEEEEEE-TTS
T ss_pred cCCCCCchhhhhcccCCCCCEEEEEECCCC
Confidence 899999 99999999888777776665543
No 89
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=25.37 E-value=2.5e+02 Score=26.91 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhCCCccEEEEeCCCCCCCCCCC-Ce-EEEecC
Q 017999 105 LNVFINFIQVTMPKSDVFILTDPASDLSMPRK-GV-TIYPIH 144 (362)
Q Consensus 105 l~~Fi~sirvsmP~snVVILTD~~T~~sl~~~-r~-~v~pi~ 144 (362)
..-++..||...|++++.+||.+.+.--+... .+ .++.++
T Consensus 22 ~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~ 63 (352)
T PRK10422 22 TTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIK 63 (352)
T ss_pred HHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEec
Confidence 35678999999999999999999876433321 23 455554
No 90
>PRK10073 putative glycosyl transferase; Provisional
Probab=25.08 E-value=6.4e+02 Score=24.45 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=14.5
Q ss_pred ccceEEEEeecccccCC
Q 017999 288 IIGASVLFLPCATYNWT 304 (362)
Q Consensus 288 v~g~sVlfLPC~~YNwt 304 (362)
..+.+|.++|-..|.|.
T Consensus 200 ~~~~~v~~~~~~ly~Yr 216 (328)
T PRK10073 200 FNALRVRYTEQSLYKYY 216 (328)
T ss_pred HHCCEEEEECCCEEEEE
Confidence 35678999999999997
No 91
>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.62 E-value=94 Score=28.39 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=27.5
Q ss_pred cceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcc
Q 017999 219 NSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGD 259 (362)
Q Consensus 219 NSGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~as~mlGD 259 (362)
+.=||.+++++- =..-+.||++|+|.|.+.-|+-.=+..|
T Consensus 79 ~i~f~mlh~~~~-~~~ik~Ffqev~elyik~lmnpFy~~~d 118 (139)
T KOG3487|consen 79 HIRFIMLHINRA-DDNIKLFFQEVHELYIKTLMNPFYEIND 118 (139)
T ss_pred cEEEEEEeeccc-cccHHHHHHHHHHHHHHHHhCcccccCC
Confidence 344677777664 2336899999999999887655444443
No 92
>PTZ00138 small nuclear ribonucleoprotein; Provisional
Probab=23.83 E-value=71 Score=26.74 Aligned_cols=68 Identities=16% Similarity=0.312 Sum_probs=40.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhccCCCccccEEEee-cCeeeecCchhhhccCCCeeEEEeeec------CCCCcCcc
Q 017999 148 SRDKLMLQRIRSYITFLERRIREHSQGQGHINHYVFTD-SDIAVVDDLGHIFHDYQNFHLALTFRN------NKDQPLNS 220 (362)
Q Consensus 148 SR~~LmlQRi~sYi~fLkT~i~e~~~~~~~i~dfIFiD-sDiaVvDdLg~IFk~~PdFHvALTfRn------nkdqPiNS 220 (362)
...++|.|+|.-+++|++++.+ + -....| .+.-+...|.-.++ |..+...| ..++.-+-
T Consensus 7 ~~~~~~~~P~~~~~~~~~~~~~--------V-~i~l~~~~~r~~~G~L~gfD~-----~mNlVL~d~~E~~~~~~~~~~l 72 (89)
T PTZ00138 7 KLQKIMTQPINQIFRFFTEKTR--------V-QIWLYDHPNLRIEGKILGFDE-----YMNMVLDDAEEVYTKKNTRKDL 72 (89)
T ss_pred ccceeecCCHHHHHHHhcCCcE--------E-EEEEEeCCCcEEEEEEEEEcc-----cceEEEccEEEEecCCceeeEc
Confidence 3457999999999999988733 1 122334 35555555544332 23343222 23455678
Q ss_pred eEEEEeCCC
Q 017999 221 GFIAVRGTP 229 (362)
Q Consensus 221 GfIfVRgt~ 229 (362)
|.+++||..
T Consensus 73 G~ilIRGnn 81 (89)
T PTZ00138 73 GRILLKGDN 81 (89)
T ss_pred CeEEEcCCE
Confidence 999999874
No 93
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=23.83 E-value=2.7e+02 Score=26.46 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCCccEEEEeCCCCCCCCCCC-Ce-EEEecC
Q 017999 105 LNVFINFIQVTMPKSDVFILTDPASDLSMPRK-GV-TIYPIH 144 (362)
Q Consensus 105 l~~Fi~sirvsmP~snVVILTD~~T~~sl~~~-r~-~v~pi~ 144 (362)
...++..||...|++.+.+||.+.+.--+... .+ .+++++
T Consensus 16 ~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~ 57 (344)
T TIGR02201 16 TTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLD 57 (344)
T ss_pred HHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeC
Confidence 45678899999999999999998876433221 23 456665
No 94
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=23.25 E-value=67 Score=28.51 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=20.0
Q ss_pred HHHHHHHHhhCCCccEEEEeCCCCC
Q 017999 106 NVFINFIQVTMPKSDVFILTDPASD 130 (362)
Q Consensus 106 ~~Fi~sirvsmP~snVVILTD~~T~ 130 (362)
..++.=|+...=...|||||||-.+
T Consensus 43 ~~~ie~i~~~~~~k~VIILTD~D~~ 67 (127)
T COG1658 43 LETIELIKKAQKYKGVIILTDPDRK 67 (127)
T ss_pred HHHHHHHHHhhccCCEEEEeCCCcc
Confidence 4567778888888999999998654
No 95
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=22.92 E-value=4.9e+02 Score=22.34 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhCCCccEEEEeCCCCCC
Q 017999 103 AILNVFINFIQVTMPKSDVFILTDPASDL 131 (362)
Q Consensus 103 avl~~Fi~sirvsmP~snVVILTD~~T~~ 131 (362)
.+|..-+.||....|+..|||+-|..|+.
T Consensus 10 ~~l~~~l~sl~~~~~~~eIivvdd~S~D~ 38 (191)
T cd06436 10 AVIQRTLASLLRNKPNFLVLVIDDASDDD 38 (191)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEECCCCcC
Confidence 45677778886655877777776666654
No 96
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=22.81 E-value=6.1e+02 Score=27.68 Aligned_cols=143 Identities=17% Similarity=0.337 Sum_probs=89.3
Q ss_pred ceEecccccccchh-hhHHHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCCC-e-EEEecCCccCchhHHHHHHHHHHHH
Q 017999 87 MVTVGNASYSKTER-SMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKG-V-TIYPIHGEYSRDKLMLQRIRSYITF 163 (362)
Q Consensus 87 ~v~vg~~~y~k~~r-~~avl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~r-~-~v~pi~g~YSR~~LmlQRi~sYi~f 163 (362)
.+|||-..|...+| -..|+..|+.-+.. ++..+-|-..+|.+.-++.+. . .+.==|| + ++-+ +=.|
T Consensus 390 hltV~vV~y~~~~~~r~GvcS~~L~~~~~--~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~G--T----GIAP---FRaf 458 (587)
T COG0369 390 HLTVGVVRYQAEGRERYGVCSGYLADLLE--EGDTIPVFVQPNKNFRLPEDPETPIIMIGPG--T----GIAP---FRAF 458 (587)
T ss_pred EEEEEEEEeccCCCcccccchHHHHhhhc--CCCeEEEEeccCCccccCCCCCCceEEEcCC--C----Cchh---HHHH
Confidence 56999999999888 77899999988877 566777777777666666553 1 1110011 0 1222 2356
Q ss_pred HHHHHHHhccCCCccccEEEe-----ecCeeeecCchhhhccCCCeeEEEeeecCCCCc------------------Ccc
Q 017999 164 LERRIREHSQGQGHINHYVFT-----DSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQP------------------LNS 220 (362)
Q Consensus 164 LkT~i~e~~~~~~~i~dfIFi-----DsDiaVvDdLg~IFk~~PdFHvALTfRnnkdqP------------------iNS 220 (362)
|+.++..-+++ ...||. ++|.+.-|++.+-.+++-.+++.+-|+-.++.. -|+
T Consensus 459 vq~r~~~~~~g----k~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~del~~~l~~g 534 (587)
T COG0369 459 VQERAANGAEG----KNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADELWEWLEEG 534 (587)
T ss_pred HHHHHhccccC----ceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHHHHHHHHCC
Confidence 66665533222 455554 889999999999777766788877655443321 266
Q ss_pred eEEEEeCCCCchhH-HHHHHHHHHH
Q 017999 221 GFIAVRGTPDGISR-AKIFLEEVLR 244 (362)
Q Consensus 221 GfIfVRgt~d~~~~-A~~FLeeVle 244 (362)
|.|+|+|...+..+ -++-|+++++
T Consensus 535 a~~YVCGd~~~Ma~dV~~AL~~il~ 559 (587)
T COG0369 535 AHIYVCGDAKGMAKDVEEALLDILA 559 (587)
T ss_pred CEEEEeCCCccchHHHHHHHHHHHH
Confidence 89999996554433 2234444444
No 97
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=22.64 E-value=6.7e+02 Score=25.32 Aligned_cols=162 Identities=14% Similarity=0.191 Sum_probs=79.6
Q ss_pred ceEecccccccchh----hhHHHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCC-CeEEEecCCccCchhHHHHHHHHHH
Q 017999 87 MVTVGNASYSKTER----SMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRK-GVTIYPIHGEYSRDKLMLQRIRSYI 161 (362)
Q Consensus 87 ~v~vg~~~y~k~~r----~~avl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~-r~~v~pi~g~YSR~~LmlQRi~sYi 161 (362)
.+||.-..|.+.+. --.+...++.. .-|+..|-|-.-++..+.++.+ ...++=|-+- -++-+ +.
T Consensus 194 ~l~v~vv~~~~~~~~~~~~~G~~S~~L~~---l~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~G-----TGIAP---fr 262 (406)
T cd06202 194 HLTVAVVSYRTRDGQGPVHHGVCSTWLNG---LTPGDTVPCFVRSAPSFHLPEDPSVPVIMVGPG-----TGIAP---FR 262 (406)
T ss_pred EEEEEEEEEECCCCCCCcccccHHHHHHh---CCCCCEEEEEEeeCCccCCCCCCCCCEEEEcCC-----cChHH---HH
Confidence 45666666643211 13556666654 3467777665555544555432 1111111110 11233 34
Q ss_pred HHHHHHHHHhc---cCCCccccEEE------eecCeeeecCchhhhccCCCeeEEEeeecCCCCc---------------
Q 017999 162 TFLERRIREHS---QGQGHINHYVF------TDSDIAVVDDLGHIFHDYQNFHLALTFRNNKDQP--------------- 217 (362)
Q Consensus 162 ~fLkT~i~e~~---~~~~~i~dfIF------iDsDiaVvDdLg~IFk~~PdFHvALTfRnnkdqP--------------- 217 (362)
.||++++.+.. +.....+..++ -|.|.+.-|+|.+.-++.+.+|+-..|.-..+.+
T Consensus 263 sflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~~~~~k~yVq~~l~~~~~~v 342 (406)
T cd06202 263 SFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSREPGKPKTYVQDLLKEQAESV 342 (406)
T ss_pred HHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCCCCCCCeehhhHHHHhHHHH
Confidence 45555543221 11112333333 2689999999999988888876655443211100
Q ss_pred -----CcceEEEEeCCCCchhHHHHHHHHHHHHHHHhhhhHhhhhcchhhhhHHh
Q 017999 218 -----LNSGFIAVRGTPDGISRAKIFLEEVLRVYSSKYMNASRMLGDQLALAWVV 267 (362)
Q Consensus 218 -----iNSGfIfVRgt~d~~~~A~~FLeeVleiY~sky~~as~mlGDQlALa~~v 267 (362)
-+.+.|+|+|... +-+.|.++-..-+++..++ .++-|-+|..
T Consensus 343 ~~~l~~~~~~iYvCG~~~-------M~~~V~~~L~~i~~~~~~~-s~~~A~~~~~ 389 (406)
T cd06202 343 YDALVREGGHIYVCGDVT-------MAEDVSQTIQRILAEHGNM-SAEEAEEFIL 389 (406)
T ss_pred HHHHHhCCCEEEEeCCCc-------hHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 1468899998874 3334444433333323232 3444555554
No 98
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=22.62 E-value=47 Score=34.23 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=21.7
Q ss_pred CccccEEEeecCeeeecCchhhhc
Q 017999 176 GHINHYVFTDSDIAVVDDLGHIFH 199 (362)
Q Consensus 176 ~~i~dfIFiDsDiaVvDdLg~IFk 199 (362)
..-+..||+|||+||.-++.+||-
T Consensus 166 tEyDRvifLDsDaivlknmDklFd 189 (368)
T COG5597 166 TEYDRVIFLDSDAIVLKNMDKLFD 189 (368)
T ss_pred hhhceEEEeccchHHhhhhHHHhc
Confidence 356889999999999999999997
No 99
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=22.13 E-value=4.2e+02 Score=22.49 Aligned_cols=24 Identities=17% Similarity=-0.053 Sum_probs=17.0
Q ss_pred ceeEEeeeccchhhhHHhhhhhcc
Q 017999 318 DVKVVHFKGSRKRLMLESWNFFSS 341 (362)
Q Consensus 318 dvKVlHFKGsRKrlMle~Wnf~~s 341 (362)
.+.+.|..|..|.=..+-|+++..
T Consensus 197 ~~~~~~~~g~s~~~~~~~~~~~~~ 220 (224)
T cd06442 197 ITFVDREHGESKLGGKEIVEYLKG 220 (224)
T ss_pred eEEeccCCCcCceeHHHHHHHHHH
Confidence 455678888877777777777653
No 100
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=21.93 E-value=4e+02 Score=21.79 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=15.5
Q ss_pred cccEEEeecCeeeecC-chhhhc
Q 017999 178 INHYVFTDSDIAVVDD-LGHIFH 199 (362)
Q Consensus 178 i~dfIFiDsDiaVvDd-Lg~IFk 199 (362)
-+-++|+|.|.+...+ |..+.+
T Consensus 80 g~~i~~lD~D~~~~~~~l~~~~~ 102 (182)
T cd06420 80 GDYLIFIDGDCIPHPDFIADHIE 102 (182)
T ss_pred CCEEEEEcCCcccCHHHHHHHHH
Confidence 3678999999988766 344433
No 101
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=21.44 E-value=4e+02 Score=24.90 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=13.7
Q ss_pred ccccEEEeecCeeeecCc
Q 017999 177 HINHYVFTDSDIAVVDDL 194 (362)
Q Consensus 177 ~i~dfIFiDsDiaVvDdL 194 (362)
..+-.+|+|.|+++..+.
T Consensus 88 ~~d~l~flD~D~i~~~~~ 105 (281)
T PF10111_consen 88 RGDYLIFLDADCIPSPDF 105 (281)
T ss_pred CCCEEEEEcCCeeeCHHH
Confidence 445678999999997653
No 102
>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.
Probab=20.83 E-value=89 Score=29.58 Aligned_cols=28 Identities=39% Similarity=0.756 Sum_probs=22.1
Q ss_pred CCcceeEEeee--ccc----hhhhHHhhhhhccC
Q 017999 315 MPLDVKVVHFK--GSR----KRLMLESWNFFSSS 342 (362)
Q Consensus 315 mPldvKVlHFK--GsR----KrlMle~Wnf~~s~ 342 (362)
+-.+.||+||. |+- .+++.+.|+.|.+.
T Consensus 102 ~gi~~~i~~f~~~~~~~~~~~~l~~~v~~yF~~~ 135 (218)
T PF07910_consen 102 LGIPCKIVDFPKSGSEIRAHPRLLDWVWNYFESG 135 (218)
T ss_dssp C-SEEEEEEES-SGCCC---CCGHHHHHHHHCCT
T ss_pred CCceEEEEEEECCCcccccHHHHHHHHHHHhhcC
Confidence 45589999999 333 68999999999977
No 103
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=20.80 E-value=99 Score=27.03 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=36.3
Q ss_pred HHHHHHHHHhh--CCCccEEEEeCCCCCCCCCCCC-------------eEEEecCCccCchhH
Q 017999 105 LNVFINFIQVT--MPKSDVFILTDPASDLSMPRKG-------------VTIYPIHGEYSRDKL 152 (362)
Q Consensus 105 l~~Fi~sirvs--mP~snVVILTD~~T~~sl~~~r-------------~~v~pi~g~YSR~~L 152 (362)
-+.++.-|+.. .++.+||+||.-++-..+.+.. =.++-+||+|+-.+|
T Consensus 46 ~~~i~~~i~~~~~~~~~~vv~ltGvG~l~P~~R~h~lL~~l~~~~~~~plv~FyPG~y~g~~l 108 (126)
T PF08747_consen 46 QEKIAEYIQEELEDDDRDVVFLTGVGSLFPFIRSHELLNNLQPKFGNVPLVVFYPGEYDGNSL 108 (126)
T ss_pred HHHHHHHHHHhccCCCCcEEEEeCcchhcchhhHHHHHHHHHHHhcCCeEEEECCceecCcee
Confidence 56677777655 7888999999999988776521 188999999996443
No 104
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.26 E-value=1.8e+02 Score=26.99 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHHHHHhhCCCccEEEEeCCCCCCCCCCCCeEEEecCCccCchhHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 017999 99 ERSMAILNVFINFIQVTMPKSDVFILTDPASDLSMPRKGVTIYPIHGEYSRDKLMLQRIRSYITFLERRIREHSQGQGHI 178 (362)
Q Consensus 99 ~r~~avl~~Fi~sirvsmP~snVVILTD~~T~~sl~~~r~~v~pi~g~YSR~~LmlQRi~sYi~fLkT~i~e~~~~~~~i 178 (362)
+.=..-+-.|+..||..||++-+|+.+..-........ .+ ..+.+.+-+.++...+++. .+..
T Consensus 74 ~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~-----------~~----~~~~~~~~~~~r~~v~~l~--~~g~ 136 (178)
T PF14606_consen 74 EEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDN-----------SR----GETVEEFREALREAVEQLR--KEGD 136 (178)
T ss_dssp TTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS-------------TT----S--HHHHHHHHHHHHHHHH--HTT-
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCc-----------hH----HHHHHHHHHHHHHHHHHHH--HcCC
Confidence 33445677899999999999999999865544332222 01 1122333455666655552 1356
Q ss_pred ccEEEeecCeeeec
Q 017999 179 NHYVFTDSDIAVVD 192 (362)
Q Consensus 179 ~dfIFiDsDiaVvD 192 (362)
.+..|+|.+-++-+
T Consensus 137 ~nl~~l~g~~llg~ 150 (178)
T PF14606_consen 137 KNLYYLDGEELLGD 150 (178)
T ss_dssp TTEEEE-HHHCS--
T ss_pred CcEEEeCchhhcCc
Confidence 77888888876533
Done!