BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018000
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp
pdb|1O1S|B Chain B, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|B Chain B, Structure Of Fpt Bound To The Cvim-Fpp Product
pdb|3EU5|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Biotingpp
pdb|4GTM|B Chain B, Ftase In Complex With Bms Analogue 11
pdb|4GTO|B Chain B, Ftase In Complex With Bms Analogue 14
pdb|4GTP|B Chain B, Ftase In Complex With Bms Analogue 16
pdb|4GTQ|B Chain B, Ftase In Complex With Bms Analogue 12
pdb|4GTR|B Chain B, Ftase In Complex With Bms Analogue 13
Length = 427
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P+ Q PHLA TYA
Sbjct: 96 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10) In Complex With Bms3 And Lipid Substrate Fpp
Length = 426
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 41 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 94
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P+ Q PHLA TYA
Sbjct: 95 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 154
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 155 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 214
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 215 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 274
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 275 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 312
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
Length = 440
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 45 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 98
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P+ Q PHLA TYA
Sbjct: 99 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 158
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 159 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 218
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 219 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 278
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 279 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 316
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25
Angstroms Resolution
pdb|1FPP|B Chain B, Protein Farnesyltransferase Complex With Farnesyl
Diphosphate
pdb|1QBQ|B Chain B, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid.
pdb|1D8D|B Chain B, Co-Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A K-Ras4b Peptide Substrate And Fpp
Analog At 2.0a Resolution
pdb|1D8E|B Chain B, Zinc-Depleted Ftase Complexed With K-Ras4b Peptide
Substrate And Fpp Analog.
pdb|1JCR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Non-Substrate Tetrapeptide Inhibitor
Cvfm And Farnesyl Diphosphate Substrate
pdb|1JCS|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With The Peptide Substrate Tkcvfm And An
Analog Of Farnesyl Diphosphate
pdb|1KZO|B Chain B, Protein Farnesyltransferase Complexed With Farnesylated
K-Ras4b Peptide Product And Farnesyl Diphosphate
Substrate Bound Simultaneously
pdb|1KZP|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
K-Ras4b Peptide Product
pdb|1O5M|B Chain B, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|1SA5|B Chain B, Rat Protein Farnesyltransferase Complexed With Fpp And
Bms- 214662
pdb|1TN7|B Chain B, Protein Farnesyltransferase Complexed With A Tc21 Peptide
Substrate And A Fpp Analog At 2.3a Resolution
pdb|1TN8|B Chain B, Protein Farnesyltransferase Complexed With A H-Ras Peptide
Substrate And A Fpp Analog At 2.25a Resolution
pdb|3DPY|B Chain B, Protein Farnesyltransferase Complexed With Fpp And Caged
Tkcvim Substrate
pdb|3E30|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylene Diamine Inhibitor 4
pdb|3E32|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 2
pdb|3E33|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine Scaffold Inhibitor 7
pdb|3E34|B Chain B, Protein Farnesyltransferase Complexed With Fpp And
Ethylenediamine-Scaffold Inhibitor 10
pdb|3KSL|B Chain B, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|B Chain B, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 437
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P+ Q PHLA TYA
Sbjct: 96 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase:
Glycine, Phenylalanine And Histidine Derivates
pdb|1X81|B Chain B, Farnesyl Transferase Structure Of Jansen Compound
Length = 397
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 21 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 74
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P+ Q PHLA TYA
Sbjct: 75 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 134
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 135 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 194
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 195 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 254
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 255 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 292
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase
Complexed With A Farnesyl Diphosphate Substrate
Length = 401
Score = 264 bits (674), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 21 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 74
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P+ Q PHLA TYA
Sbjct: 75 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 134
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 135 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 194
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 195 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 254
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 255 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 292
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
pdb|2BED|B Chain B, Structure Of Fpt Bound To Inhibitor Sch207736
pdb|2R2L|B Chain B, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 401
Score = 264 bits (674), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 20 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 73
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P+ Q PHLA TYA
Sbjct: 74 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 133
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 134 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 193
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 194 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 253
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 254 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 291
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|B Chain B, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|B Chain B, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 402
Score = 263 bits (673), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 174/278 (62%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 21 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 74
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P+ Q PHLA TYA
Sbjct: 75 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 134
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 135 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 194
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 195 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 254
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 255 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 292
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|B Chain B, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|B Chain B, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|B Chain B, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|B Chain B, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|B Chain B, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2F0Y|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|2IEJ|B Chain B, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
pdb|3E37|B Chain B, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 437
Score = 263 bits (673), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 172/278 (61%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P Q PHLA TYA
Sbjct: 96 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ L+L +L+
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
Length = 437
Score = 263 bits (673), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 172/278 (61%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P Q PHLA TYA
Sbjct: 96 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ L+L +L+
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
Length = 437
Score = 258 bits (660), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 133/278 (47%), Positives = 171/278 (61%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RP +CYWILHS+ LL E + + +FL CQ P Q PHLA TYA
Sbjct: 96 LDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ L+L +L+
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
Length = 437
Score = 258 bits (660), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 133/278 (47%), Positives = 171/278 (61%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RP +CYWILHS+ LL E + + +FL CQ P Q PHLA TYA
Sbjct: 96 LDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ L+L +L+
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit
Delta C10, W102t, Y154t) In Complex With Biotingpp
Length = 427
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/278 (47%), Positives = 172/278 (61%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXXXXXXXXQMPHLATTYA 126
LDA+RP +CYWILHS+ LL E + + +FL CQ P+ Q PHLA T A
Sbjct: 96 LDASRPTLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTTA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo
Enzyme
pdb|3Q75|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tkcvvm Peptide
pdb|3Q78|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fspp And Ddptasacniq Peptide
pdb|3Q79|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Farnesyl-Ddptasacniq Product
pdb|3Q7A|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And L-778,123
pdb|3Q7F|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpp And Ethylenediamine Inhibitor 1
pdb|3SFX|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Tipifarnib
pdb|3SFY|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase In
Complex With Fpt-Ii And Ethylenediamine Inhibitor 2
Length = 520
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 112/316 (35%), Positives = 160/316 (50%), Gaps = 52/316 (16%)
Query: 8 RGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMME-------LQRKNHVEYLLRGLQQL 60
R + T EQ+ + ++ L+ + A L+ E L+++ H ++L QL
Sbjct: 22 RPSATLDEQAETEDLISQLFDLTAD----PNALVSEHGKRYSGLRKQEHTQFLASSFFQL 77
Query: 61 GPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNXX--XXXXXXQM 118
F SLDA+RPW+ +W +HS+ LLG +D +DR + L P Q+
Sbjct: 78 PGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQI 137
Query: 119 PHLATTYAAVNALI------SLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDV 172
PHL TYA+V +L S GG K L + +S F++C K P G F + + GE+DV
Sbjct: 138 PHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRC-KRPDGGFVVCEGGEVDV 196
Query: 173 RACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIA------------------GEP 214
R Y + VA++L+I+ ELL NV ++ +CQTYEGG A EP
Sbjct: 197 RGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEP 256
Query: 215 G-----SEAHGGYTFCGLAAMILINEAD------RLDLDALIGWVVFRQGVE---GGFQG 260
+EAHGGYT C L + L+ +D +A + W V +QG GGF+G
Sbjct: 257 SCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRG 316
Query: 261 RTNKLVDGCYSFWQGG 276
RTNKLVDGCYS+W GG
Sbjct: 317 RTNKLVDGCYSWWVGG 332
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 9/250 (3%)
Query: 39 TLMMELQRKNHVEYLLR-GLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRT 97
TL++E H +Y+ G ++ +C + R YW L M L+G+ + E+
Sbjct: 17 TLLLE----KHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEIL 72
Query: 98 IEFLSRCQDPNXXXXXXXXQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
+ F+ CQ PHL T +AV L S+ IN KV +++ ++
Sbjct: 73 V-FIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLY---DSIHVINVDKVVAYVQSLQK 128
Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 217
G+F GEID R + A++ ++L LD ++ ++LSC ++GG PGSE
Sbjct: 129 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSE 188
Query: 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277
+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 189 SHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLAS 248
Query: 278 FALLRRFHSI 287
++ R H I
Sbjct: 249 LKIIGRLHWI 258
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 9/250 (3%)
Query: 39 TLMMELQRKNHVEYLLR-GLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRT 97
TL++E H +Y+ G ++ +C + R YW L M L+G+ + E+
Sbjct: 16 TLLLE----KHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEIL 71
Query: 98 IEFLSRCQDPNXXXXXXXXQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
+ F+ CQ PHL T +AV L S+ IN KV +++ ++
Sbjct: 72 V-FIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLY---DSIHVINVDKVVAYVQSLQK 127
Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 217
G+F GEID R + A++ ++L LD ++ ++LSC ++GG PGSE
Sbjct: 128 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSE 187
Query: 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277
+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 188 SHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLAS 247
Query: 278 FALLRRFHSI 287
++ R H I
Sbjct: 248 LKIIGRLHWI 257
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4P|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Geranylgeranyl Diphosphate
pdb|1N4Q|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4Q|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Ggpp Analog And A Kkksktkcvil Peptide
pdb|1N4R|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4R|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With A
Geranylgeranylated Kkksktkcvil Peptide Product
pdb|1N4S|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|D Chain D, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|F Chain F, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|H Chain H, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|J Chain J, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1N4S|L Chain L, Protein Geranylgeranyltransferase Type-I Complexed With
Ggpp And A Geranylgeranylated Kkksktkcvil Peptide
Product
pdb|1S64|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1S64|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With L-778,123 And A Sulfate Anion
pdb|1TNB|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNB|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Substrate Kksktkcvif Peptide
Derived From Tc21
pdb|1TNO|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNO|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Kkksktkcvim Peptide Derived
From K- Ras4b
pdb|1TNU|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNU|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Gcincckvl Peptide Derived From
Rhob
pdb|1TNY|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNY|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Frekkffcail Peptide Derived
From The Heterotrimeric G Protein Gamma-2 Subunit
pdb|1TNZ|B Chain B, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|D Chain D, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|F Chain F, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|H Chain H, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|J Chain J, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
pdb|1TNZ|L Chain L, Rat Protein Geranylgeranyltransferase Type-I Complexed
With A Ggpp Analog And A Rrcvll Peptide Derived From
Cdc42 Splice Isoform-2
Length = 377
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 128/275 (46%), Gaps = 36/275 (13%)
Query: 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEF- 100
++ R HV + R LQ L + SL+ +R I ++ L + +L + +D +D IE+
Sbjct: 18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDML-DSLDVVNKDDIIEWI 76
Query: 101 -------------LSRCQ--------DPNXXXXXXXXQMP----HLATTYAAVNALISLG 135
L RC P P H+A TY ++ LI LG
Sbjct: 77 YSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG 136
Query: 136 GEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTAISVASILNILDDELLQ 194
+ L +++ L+ ++ G+F + + E D+R Y A + +LN ++
Sbjct: 137 DD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMK 194
Query: 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF 250
+YI +Y+ G+A G E+HGG TFCG+A++ L+ + + + +L+ + W +
Sbjct: 195 KAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254
Query: 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 285
RQ + G+ GR NK VD CYSFW G LL+ F
Sbjct: 255 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 390
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 126/313 (40%), Gaps = 87/313 (27%)
Query: 41 MMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLE------ 94
M +L H ++ R L L + S D+N+ I Y+ LH + L+ +F + E
Sbjct: 1 MNQLLINKHEKFFNRCLIGLPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRN 60
Query: 95 ----------DRTIEFLSR--CQDPNXXXXXXXXQMPHLATT-YAAVNALISLGGEKSLP 141
++ I F S Q N P+L++T +A N LI ++
Sbjct: 61 FIINQFMIENNQIISFRSTHYFQKTNQKY-----DCPNLSSTLFALYNLLILKSPYHTI- 114
Query: 142 SINRSKVYTFL-KC-MKD---------------PSGAFRMHDAGEIDVRACYTAISVASI 184
INR K+ FL KC +KD +G ++ + GE D+R CY A+ + +
Sbjct: 115 -INRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQY--GEPDLRVCYMALLIRHL 171
Query: 185 LNILD-------------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMI 231
+ D D L ++ +IL GG + E+H G+TFC +A++
Sbjct: 172 MKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLK 231
Query: 232 LINEADRLDLDALIGWVVFRQ---------------------------GVE-GGFQGRTN 263
L+N L + W++ RQ ++ GGF GR N
Sbjct: 232 LLNYPLE-KLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGREN 290
Query: 264 KLVDGCYSFWQGG 276
KL D CYS+W G
Sbjct: 291 KLSDTCYSWWCTG 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,796,224
Number of Sequences: 62578
Number of extensions: 374041
Number of successful extensions: 716
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 50
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)