BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018000
(362 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB
PE=2 SV=1
Length = 419
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/374 (58%), Positives = 259/374 (69%), Gaps = 60/374 (16%)
Query: 7 PRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
P TV+QR+Q +V + V +Y ++A +PP AQ+++
Sbjct: 10 PTPTVSQRDQWIVESQVFHIYQLFANIPPNAQSII------------------------- 44
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
RPW+CYWI+HS+ALLGE +D DLED T++FL+RCQDPNGGY GGPGQMPHLATTYA
Sbjct: 45 ----RPWLCYWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQMPHLATTYA 100
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVN LI+LGGEKSL SINR+K+Y F++ MK P+G FRMHD GEIDVRACYTAISVAS+LN
Sbjct: 101 AVNTLITLGGEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLN 160
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
ILDDEL++NVG++ILSCQTYEGG+AGEPGSEAHGGYTFCGLAAMILI E +RLDL L+
Sbjct: 161 ILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLD 220
Query: 247 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDN 306
WVVFRQG E GFQGRTNKLVDGCYSFWQGG ALL+R HSII D++ AE S
Sbjct: 221 WVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSII-------DEQMAEAS--- 270
Query: 307 TQTTTASDVSEGDGSSDEISSQGDEHCHF--------------------QHREREPLFHS 346
Q T SD E D SS H + R+ EPLFHS
Sbjct: 271 -QFVTVSDAPEEKECLDGTSSHATSHIRHEGMNESCSSDVKNIGYNFISEWRQSEPLFHS 329
Query: 347 IALQRYLLLCSQVQ 360
IALQ+Y+LLCSQ Q
Sbjct: 330 IALQQYILLCSQEQ 343
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana
GN=FTB PE=1 SV=3
Length = 482
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/358 (60%), Positives = 260/358 (72%), Gaps = 8/358 (2%)
Query: 10 TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
TV+QREQ +V NDV +Y+ + Q MME+QR ++YL++GL+QLGP F SLDA
Sbjct: 47 TVSQREQFLVENDVFGIYNYFDASDVSTQKYMMEIQRDKQLDYLMKGLRQLGPQFSSLDA 106
Query: 70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129
NRPW+CYWILHS+ALLGE VD +LE I+FL RCQ GGYGGGPGQ+PHLATTYAAVN
Sbjct: 107 NRPWLCYWILHSIALLGETVDDELESNAIDFLGRCQGSEGGYGGGPGQLPHLATTYAAVN 166
Query: 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
AL++LGG+K+L SINR K+ FL+ MKD SG FRMHD GE+DVRACYTAISVASILNI+D
Sbjct: 167 ALVTLGGDKALSSINREKMSCFLRRMKDTSGGFRMHDMGEMDVRACYTAISVASILNIMD 226
Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
DEL Q +G+YILSCQTYEGGI GEPGSEAHGGYT+CGLAAMILINE DRL+LD+L+ W V
Sbjct: 227 DELTQGLGDYILSCQTYEGGIGGEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAV 286
Query: 250 FRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRF-----HSIIGESPTPVDQRGAECSI 304
RQGVE GFQGRTNKLVDGCY+FWQ LL+R H + G S +
Sbjct: 287 HRQGVEMGFQGRTNKLVDGCYTFWQAAPCVLLQRLYSTNDHDVHGSSHISEGTNEEHHAH 346
Query: 305 DNTQTTTASDVSEGDGSSDEISSQGDEHCH---FQHREREPLFHSIALQRYLLLCSQV 359
D + D + D +DE S G H + +R + +F S+ LQRY+LLCS++
Sbjct: 347 DEDDLEDSDDDDDSDEDNDEDSVNGHRIHHTSTYINRRMQLVFDSLGLQRYVLLCSKI 404
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2
SV=1
Length = 437
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 142/278 (51%), Positives = 182/278 (65%), Gaps = 10/278 (3%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P GG+GGGPGQ PHLA TYA
Sbjct: 96 LDASRPWLCYWILHSLELLDEPIPQMVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MHD GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDVINREKLLQYLYSLKQPDGSFLMHDGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR 313
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb
PE=1 SV=1
Length = 437
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 152/350 (43%), Positives = 200/350 (57%), Gaps = 48/350 (13%)
Query: 10 TVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDA 69
TVT EQ+ V + ++ Y + + + LQR+ H YL RGL+QL ++ LDA
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLI---LQREKHFHYLKRGLRQLTDAYECLDA 98
Query: 70 NRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129
+RPW+CYWILHS+ LL E + + +FL CQ P+GG+GGGPGQ PHLA TYAAVN
Sbjct: 99 SRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYAAVN 158
Query: 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189
AL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ NI+
Sbjct: 159 ALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIIT 218
Query: 190 DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249
+L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+ WV
Sbjct: 219 PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQWVT 278
Query: 250 FRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQ 308
RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 279 SRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR------------------------- 313
Query: 309 TTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 358
+ +QGD H +FH ALQ Y+L+C Q
Sbjct: 314 ---------------ALHAQGDPALSMSHW----MFHQQALQEYILMCCQ 344
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus
GN=Fntb PE=1 SV=1
Length = 437
Score = 265 bits (678), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 154/353 (43%), Positives = 200/353 (56%), Gaps = 54/353 (15%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P+GG+GGGPGQ PHLA TYA
Sbjct: 96 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPDGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ + L+L +L+
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKKERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSID 305
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR---------------------- 313
Query: 306 NTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 358
+ +QGD H +FH ALQ Y+L+C Q
Sbjct: 314 ------------------ALHAQGDPALSMSHW----MFHQQALQEYILMCCQ 344
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB
PE=1 SV=1
Length = 437
Score = 265 bits (676), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 154/353 (43%), Positives = 198/353 (56%), Gaps = 54/353 (15%)
Query: 10 TVTQREQSMVLNDVNMLYHIYA---TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCS 66
TVT EQ+ V + ++ Y VP + LQR+ H YL RGL+QL ++
Sbjct: 42 TVTSIEQAKVEEKIQEVFSSYKFNHLVPRLV------LQREKHFHYLKRGLRQLTDAYEC 95
Query: 67 LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYA 126
LDA+RPW+CYWILHS+ LL E + + +FL CQ P GG+GGGPGQ PHLA TYA
Sbjct: 96 LDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYA 155
Query: 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN 186
AVNAL +G E++ INR K+ +L +K P G+F MH GE+DVR+ Y A SVAS+ N
Sbjct: 156 AVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTN 215
Query: 187 ILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIG 246
I+ +L + +I CQ +EGGI G PG EAHGGYTFCGLAA++++ L+L +L+
Sbjct: 216 IITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQ 275
Query: 247 WVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSID 305
WV RQ EGGFQGR NKLVDGCYSFWQ G+ LL R
Sbjct: 276 WVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHR---------------------- 313
Query: 306 NTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQ 358
+ +QGD H +FH ALQ Y+L+C Q
Sbjct: 314 ------------------ALHAQGDPALSMSHW----MFHQQALQEYILMCCQ 344
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium
discoideum GN=fntB PE=3 SV=1
Length = 500
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 105/257 (40%), Positives = 163/257 (63%), Gaps = 17/257 (6%)
Query: 44 LQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDA--DLEDRTIEFL 101
+++K + +L+ G++++ S LD+++ WI +WIL+ M +L +D+ ++ R ++L
Sbjct: 56 IEKKKILNFLMNGIEKIPMSHQGLDSSKVWISFWILNGMDMLDS-LDSYPNISSRASKYL 114
Query: 102 S--------------RCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSK 147
S GG+GGG H+ +T+AAV+AL +G E+S +I+R
Sbjct: 115 SILQNDDNNGNNNNRENNQNGGGFGGGNSHTSHVVSTFAAVSALYVIGTEESYKTIDREA 174
Query: 148 VYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYE 207
+Y FL MK GAF D GE D R Y AI+VAS+LNIL EL + V +++LSCQTYE
Sbjct: 175 MYKFLMRMKTKEGAFTSEDGGEYDSRTTYCAIAVASMLNILTAELERGVVDFLLSCQTYE 234
Query: 208 GGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVD 267
GG P +EAHGGYTFC +AA+ ++N ++D+++L W+ +RQ +GGF+GRTNKLVD
Sbjct: 235 GGFGAYPFNEAHGGYTFCSVAALSILNSLHKIDMNSLHRWITYRQSNDGGFEGRTNKLVD 294
Query: 268 GCYSFWQGGVFALLRRF 284
CYS+WQG V+ +++ +
Sbjct: 295 TCYSYWQGAVYIIIQSY 311
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1
Length = 382
Score = 194 bits (493), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 152/247 (61%), Gaps = 3/247 (1%)
Query: 32 TVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDA 91
V P+ + H++YL + L L F LDA+R W+ YW L S+A+LG+ +D+
Sbjct: 17 AVLPLLNGESQSFNLQKHLKYLTKMLDPLPSPFTVLDASRAWMVYWELSSLAILGK-LDS 75
Query: 92 DLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTF 151
+ +R I + + + P+GG+ GG GQ HL +TYA++ ++ + I R ++Y +
Sbjct: 76 SVCERAISSVRQLKGPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLYDW 135
Query: 152 LKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGI 210
L +K+P G+FR+++ GE D R+ Y A+ V+S++ I +DD L + ++ CQTYEGG+
Sbjct: 136 LFSLKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKCQTYEGGL 195
Query: 211 AGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGC 269
+G P +EAHGGYTFC LAA+ L+ D L+ L W+V RQ GF GR+NKLVDGC
Sbjct: 196 SGVPYAEAHGGYTFCALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVDGC 255
Query: 270 YSFWQGG 276
YS+W G
Sbjct: 256 YSWWVGA 262
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 177 bits (450), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 169/290 (58%), Gaps = 13/290 (4%)
Query: 1 MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQ-Q 59
++P + T T + VL V +Y + P L ++ H YL +
Sbjct: 42 IQPLMKELETDTTEARYKVLQSVLEIYDDEKNIEP-------ALTKEFHKMYLDVAFEIS 94
Query: 60 LGPSFCSLDANRPWICYWILHSMALLG-EFVDADLEDRTIEFLSRCQDPNGGYGGGPGQM 118
L P +LDA++PW+ YWI +S+ ++ +++ D + + ++ L G +GGGPGQ+
Sbjct: 95 LPPQMTALDASQPWMLYWIANSLKVMDRDWLSDDTKRKIVDKLFTISPSGGPFGGGPGQL 154
Query: 119 PHLATTYAAVNAL-ISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM-HDAGEIDVRACY 176
HLA+TYAA+NAL + + I+R +Y +L +K+P+G F+ + GE+D R Y
Sbjct: 155 SHLASTYAAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIY 214
Query: 177 TAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPG-SEAHGGYTFCGLAAMILINE 235
A+S+A++LNIL +EL + V NY+ +CQ YEGG P EAHGGYTFC A++ ++
Sbjct: 215 CALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRS 274
Query: 236 ADRLDLDALIGWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRF 284
D+++++ L+ W RQ E GF GR+NKLVDGCYSFW GG A+L F
Sbjct: 275 MDQINVEKLLEWSSARQLQEERGFCGRSNKLVDGCYSFWVGGSAAILEAF 324
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta
OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1
Length = 339
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 122/250 (48%), Gaps = 25/250 (10%)
Query: 49 HVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEF-----------VDADLEDRT 97
HVEY+++ LG S + YW+ + + G + +D ++
Sbjct: 27 HVEYIVK----LGSKKDSFE-------YWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEV 75
Query: 98 IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
I++L CQ NGG+GG HL +T +AV LI +L I+ + V ++ ++
Sbjct: 76 IQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQY---DALDKIDINSVVDYVVKLQR 132
Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 217
G+F GE+D R Y AI S+L LD + YILSCQ ++GG PG+E
Sbjct: 133 EDGSFVGDQWGEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAE 192
Query: 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277
+H G F + A+ ++NE +++D+D L W+ RQ GG GR K D CYS+W
Sbjct: 193 SHAGQIFTCVGALSILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWVLSA 252
Query: 278 FALLRRFHSI 287
+ + R H I
Sbjct: 253 LSAIDRLHWI 262
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans
GN=BET2 PE=3 SV=1
Length = 341
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 132/267 (49%), Gaps = 17/267 (6%)
Query: 31 ATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD 90
+ +PP + ++ + + HV+Y++ + + R YW + ++ + E +
Sbjct: 2 SNLPPDEKVILFD--KSKHVQYIVEQESHRSFEYWLSEHLRMNGLYWGVTALITMNE-LS 58
Query: 91 ADLEDRTIEFLSRC-QDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSIN----- 144
A + I+++ C D G +G P H+ +T +A+ L E ++ + N
Sbjct: 59 ALAQQDVIDYIMLCWDDKTGAFGSFPKHDGHILSTLSALQVLKIYDQELTVLNDNNESSN 118
Query: 145 ---RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYIL 201
R ++ F+ ++ P G+F+ GE+D R YTA+S S+LN L D + +I+
Sbjct: 119 GNKRERLIKFITGLQLPDGSFQGDKYGEVDTRFVYTAVSSLSLLNALTDSIADTASAFIM 178
Query: 202 SCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLD----ALIGWVVFRQGV-EG 256
C ++GG PGSE+H F + A+ ++N+ D LD++ LI W+ RQ + G
Sbjct: 179 QCFNFDGGFGLIPGSESHAAQVFTCVGALAIMNKLDLLDVENKKVKLIDWLTERQVLPSG 238
Query: 257 GFQGRTNKLVDGCYSFWQGGVFALLRR 283
GF GR KL D CYS+W ++L+R
Sbjct: 239 GFNGRPEKLPDVCYSWWVLSSLSILKR 265
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 74 ICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALIS 133
Y + S++LL D+ + D F+ +C + +GG+G PG H A + V AL
Sbjct: 151 FVYTAVSSLSLLNALTDS-IADTASAFIMQCFNFDGGFGLIPGSESHAAQVFTCVGALAI 209
Query: 134 LGGEKSLPSINRS-KVYTFLKCMKD-PSGAFRMHDAGEIDVRACYTAISVASIL---NIL 188
+ L N+ K+ +L + PSG F DV + +S SIL N +
Sbjct: 210 MNKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDVCYSWWVLSSLSILKRKNWV 269
Query: 189 DDELLQNVGNYILSCQTYE-GGIAGEPGSEAHGGYTFCGLAAMILIN 234
D ++L+N +IL+CQ E GG + PG++ +T +A + LI+
Sbjct: 270 DLKILEN---FILTCQDLENGGFSDRPGNQTDVYHTCFAIAGLSLID 313
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus
GN=Rabggtb PE=1 SV=1
Length = 331
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 9/250 (3%)
Query: 39 TLMMELQRKNHVEYLLR-GLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRT 97
TL++E H +Y+ G ++ +C + R YW L M L+G+ + E+
Sbjct: 17 TLLLE----KHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEIL 72
Query: 98 IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
+ F+ CQ GG G PHL T +AV L S+ IN KV +++ ++
Sbjct: 73 V-FIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLY---DSIHVINVDKVVAYVQSLQK 128
Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 217
G+F GEID R + A++ ++L LD ++ ++LSC ++GG PGSE
Sbjct: 129 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSE 188
Query: 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277
+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 189 SHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLAS 248
Query: 278 FALLRRFHSI 287
++ R H I
Sbjct: 249 LKIIGRLHWI 258
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 72 PWICY--WILHSMALLGEFVDADLEDRTIEFLSRCQD-PNGGYGGGPGQMPHLATTYAAV 128
P +CY W+L S+ ++G D E + F+ CQD GG+ PG M T +
Sbjct: 237 PDVCYSWWVLASLKIIGRLHWIDRE-KLRSFILACQDEETGGFADRPGDMVDPFHTLFGI 295
Query: 129 NALISLGGEKSLP 141
L LG E+ P
Sbjct: 296 AGLSLLGEEQIKP 308
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus
GN=Rabggtb PE=1 SV=2
Length = 339
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 9/250 (3%)
Query: 39 TLMMELQRKNHVEYLLR-GLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRT 97
TL++E H +Y+ G ++ +C + R YW L M L+G+ + E+
Sbjct: 25 TLLLE----KHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEIL 80
Query: 98 IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
+ F+ CQ GG G PHL T +AV L S+ IN KV +++ ++
Sbjct: 81 V-FIKSCQHECGGISASIGHDPHLLYTLSAVQILTLY---DSVHVINVDKVVAYVQSLQK 136
Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 217
G+F GEID R + A++ ++L LD ++ ++LSC ++GG PGSE
Sbjct: 137 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSE 196
Query: 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277
+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 197 SHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLAS 256
Query: 278 FALLRRFHSI 287
++ R H I
Sbjct: 257 LKIIGRLHWI 266
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 72 PWICY--WILHSMALLGEFVDADLEDRTIEFLSRCQD-PNGGYGGGPGQMPHLATTYAAV 128
P +CY W+L S+ ++G D E + F+ CQD GG+ PG M T +
Sbjct: 245 PDVCYSWWVLASLKIIGRLHWIDRE-KLRSFILACQDEETGGFADRPGDMVDPFHTLFGI 303
Query: 129 NALISLGGEKSLP 141
L LG E+ P
Sbjct: 304 AGLSLLGEEQIKP 316
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens
GN=RABGGTB PE=1 SV=2
Length = 331
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 122/250 (48%), Gaps = 9/250 (3%)
Query: 39 TLMMELQRKNHVEYLLR-GLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRT 97
TL++E H +Y+ G ++ +C + R YW L M L+G+ + E+
Sbjct: 17 TLLLE----KHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREE-I 71
Query: 98 IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
+ F+ CQ GG G PHL T +AV L S+ I+ +KV ++K ++
Sbjct: 72 LAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLY---DSINVIDVNKVVEYVKGLQK 128
Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 217
G+F GEID R + A++ ++L LD ++ ++LSC ++GG PGSE
Sbjct: 129 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSE 188
Query: 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277
+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 189 SHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLAS 248
Query: 278 FALLRRFHSI 287
++ R H I
Sbjct: 249 LKIIGRLHWI 258
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 72 PWICY--WILHSMALLGEFVDADLEDRTIEFLSRCQD-PNGGYGGGPGQMPHLATTYAAV 128
P +CY W+L S+ ++G D E + F+ CQD GG+ PG M T +
Sbjct: 237 PDVCYSWWVLASLKIIGRLHWIDRE-KLRNFILACQDEETGGFADRPGDMVDPFHTLFGI 295
Query: 129 NALISLGGEKSLPSIN 144
L SL GE+ + +N
Sbjct: 296 AGL-SLLGEEQIKPVN 310
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus
GN=RABGGTB PE=2 SV=1
Length = 331
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 9/250 (3%)
Query: 39 TLMMELQRKNHVEYLLR-GLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRT 97
TL++E H +Y+ G ++ +C + R YW L M L+G+ + E+
Sbjct: 17 TLLLE----KHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREE-I 71
Query: 98 IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD 157
+ F+ CQ GG G PHL T +AV L S+ I+ +KV +++ ++
Sbjct: 72 LTFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLY---DSINVIDINKVVEYVQSLQK 128
Query: 158 PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSE 217
G+F GEID R + A++ ++L LD ++ ++LSC ++GG PGSE
Sbjct: 129 EDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSE 188
Query: 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGV 277
+H G +C + + ++ +++ D L W+ RQ GG GR KL D CYS+W
Sbjct: 189 SHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLAS 248
Query: 278 FALLRRFHSI 287
++ R H I
Sbjct: 249 LKIIGRLHWI 258
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 72 PWICY--WILHSMALLGEFVDADLEDRTIEFLSRCQD-PNGGYGGGPGQMPHLATTYAAV 128
P +CY W+L S+ ++G D E + F+ CQD GG+ PG M T +
Sbjct: 237 PDVCYSWWVLASLKIIGRLHWIDRE-KLRSFILACQDEETGGFADRPGDMVDPFHTLFGI 295
Query: 129 NALISLGGEKSLP 141
L LG E+ P
Sbjct: 296 AGLSLLGEEQIKP 308
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ptb1 PE=3 SV=1
Length = 311
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 119/255 (46%), Gaps = 19/255 (7%)
Query: 41 MMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWI--------CYWILHSMALLGEFVDAD 92
M L R H+ YL +G LD W+ YW S LL + D
Sbjct: 1 MAVLLRDKHISYL----HDIGNRTDELDF---WLKEHLHVSAIYWSCMSFWLLKKKDQID 53
Query: 93 LEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFL 152
E R + FL C +GG+ PG H+ T AV L L SL +++ KV +++
Sbjct: 54 KE-RIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLAML---DSLHVVDKDKVASYI 109
Query: 153 KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAG 212
+++ G+ + GEID R Y+ I+ +IL LD ++++ C ++GG
Sbjct: 110 IGLQNEDGSMKGDRWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGL 169
Query: 213 EPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSF 272
PG+E+HG F +AA+ ++N+ D +D + L W+ RQ GG GR KL D CY +
Sbjct: 170 CPGAESHGAMVFTCVAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPDSCYGW 229
Query: 273 WQGGVFALLRRFHSI 287
W A++ + I
Sbjct: 230 WDLSPLAIIGKLDWI 244
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus
GN=PGGT1B PE=2 SV=1
Length = 377
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 132/275 (48%), Gaps = 36/275 (13%)
Query: 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEF- 100
++ R HV + R LQ L + SL+ +R I ++ L + +L + +D +D IE+
Sbjct: 18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDML-DSLDVVNKDDIIEWI 76
Query: 101 -------------LSRCQDPNGGYGG---GPGQMP---------HLATTYAAVNALISLG 135
L+RC Y G P + P H+A TY ++ L+ LG
Sbjct: 77 YSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLVILG 136
Query: 136 GEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTAISVASILNILDDELLQ 194
+ L +N+ L+ ++ G+F + + E D+R Y A + +LN ++
Sbjct: 137 DD--LSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMK 194
Query: 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF 250
NYI +Y+ G+A G E+HGG TFCG+A++ L+ + + + +L+ + W +
Sbjct: 195 KAINYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254
Query: 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 285
RQ + G+ GR NK VD CYSFW G LL+ F
Sbjct: 255 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta
OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2
Length = 335
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 4/212 (1%)
Query: 76 YWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLG 135
YW +++M L + E+ + ++ C++ +GGYG PG HL T AV LI
Sbjct: 57 YWCVNAMDLSKQLERMSTEE-IVNYVLGCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIF- 114
Query: 136 GEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQN 195
S+ + + ++K ++ G+F +GE+D R +++ +L L + +
Sbjct: 115 --NSIEKADADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDS 172
Query: 196 VGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVE 255
+++ C +GG PGSE+H G +C + A+ + D +D D W+ FRQ
Sbjct: 173 AVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDS 232
Query: 256 GGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 287
GG GR KL D CYS+W A+L R + I
Sbjct: 233 GGLNGRPEKLPDVCYSWWVLASLAILGRLNFI 264
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 26 LYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMA-- 83
L H V + +E + + ++GLQQ SFC D + + L S+A
Sbjct: 101 LLHTLCAVQTLIIFNSIEKADADTISEYVKGLQQEDGSFCG-DLSGEVDTRFTLCSLATC 159
Query: 84 -LLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPS 142
LLG ++ D + FL RC + +GG+G PG H Y V AL G L
Sbjct: 160 HLLGRLSTLNI-DSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAG---RLDE 215
Query: 143 INRSKVYTFLKCMKDPSGAFRMHDAGEIDVR------ACYTAISVASI-----LNILDDE 191
I+R + +L AFR D+G ++ R CY+ +AS+ LN +D +
Sbjct: 216 IDRDRTAEWL--------AFRQCDSGGLNGRPEKLPDVCYSWWVLASLAILGRLNFIDSD 267
Query: 192 LLQNVGNYILSCQTYE-GGIAGEPGSEAHGGYTFCGLAAMILINE 235
++ +I +CQ E GG A PG A +T G+AA+ L +
Sbjct: 268 AMKK---FIYACQDDETGGFADRPGDCADPFHTVFGIAALSLFGD 309
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%)
Query: 167 AGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCG 226
A + V Y ++ + L+ + + NY+L C+ +GG PG ++H +T C
Sbjct: 48 AEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVLGCRNTDGGYGPAPGHDSHLLHTLCA 107
Query: 227 LAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHS 286
+ +I+ N ++ D D + +V Q +G F G + VD ++ LL R +
Sbjct: 108 VQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLST 167
Query: 287 I 287
+
Sbjct: 168 L 168
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens
GN=PGGT1B PE=1 SV=2
Length = 377
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 36/275 (13%)
Query: 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEF- 100
++ R HV + R LQ L + SL+ +R I ++ L + +L + +D +D IE+
Sbjct: 18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDML-DSLDVVNKDDIIEWI 76
Query: 101 -------------LSRCQDPNGGYGG---GPGQMP---------HLATTYAAVNALISLG 135
L+RC Y G P + P H+A TY ++ L+ LG
Sbjct: 77 YSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTYTGLSCLVILG 136
Query: 136 GEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTAISVASILNILDDELLQ 194
+ L +N+ L+ ++ G+F + + E D+R Y A + +LN ++
Sbjct: 137 DD--LSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMK 194
Query: 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF 250
YI +Y+ G+A G E+HGG TFCG+A++ L+ + + + +L+ + W +
Sbjct: 195 KAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254
Query: 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 285
RQ + G+ GR NK VD CYSFW G LL+ F
Sbjct: 255 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus
GN=Pggt1b PE=2 SV=1
Length = 377
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 132/275 (48%), Gaps = 36/275 (13%)
Query: 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEF- 100
++ R HV + R LQ L + SL+ +R I ++ L + +L + +D +D IE+
Sbjct: 18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDML-DSLDVVNKDDIIEWI 76
Query: 101 -------------LSRCQDPNGGYGG---GPGQMP---------HLATTYAAVNALISLG 135
LSRC Y G P + P H+A TY ++ LI LG
Sbjct: 77 YSLQVLPTEDRSNLSRCGFRGSSYLGIPFNPSKNPGAAHPYDSGHIAMTYTGLSCLIILG 136
Query: 136 GEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTAISVASILNILDDELLQ 194
+ L +++ L+ ++ G+F + + E D+R Y A + +LN ++
Sbjct: 137 DD--LGRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMK 194
Query: 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF 250
+YI +Y+ G+A G E+HGG TFCG+A++ L+ + + + +L+ + W +
Sbjct: 195 KAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254
Query: 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 285
RQ + G+ GR NK VD CYSFW G LL+ F
Sbjct: 255 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus
GN=Pggt1b PE=1 SV=1
Length = 377
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 131/275 (47%), Gaps = 36/275 (13%)
Query: 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEF- 100
++ R HV + R LQ L + SL+ +R I ++ L + +L + +D +D IE+
Sbjct: 18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDML-DSLDVVNKDDIIEWI 76
Query: 101 -------------LSRCQDPNGGYGG---GPGQMP---------HLATTYAAVNALISLG 135
L RC Y G P + P H+A TY ++ LI LG
Sbjct: 77 YSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG 136
Query: 136 GEKSLPSINRSKVYTFLKCMKDPSGAF-RMHDAGEIDVRACYTAISVASILNILDDELLQ 194
+ L +++ L+ ++ G+F + + E D+R Y A + +LN ++
Sbjct: 137 DD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMK 194
Query: 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF 250
+YI +Y+ G+A G E+HGG TFCG+A++ L+ + + + +L+ + W +
Sbjct: 195 KAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254
Query: 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 285
RQ + G+ GR NK VD CYSFW G LL+ F
Sbjct: 255 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQ 287
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1
SV=3
Length = 325
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 5/222 (2%)
Query: 76 YWILHSMALLGEFVDADLEDRTIEFLSRCQDPN-GGYGGGPGQMPHLATTYAAVNALISL 134
YW L ++ +L + +++ I F+ C D G + P HL TT +AV L +
Sbjct: 40 YWGLTALCVLDS-PETFVKEEVISFVLSCWDDKYGAFAPFPRHDAHLLTTLSAVQILATY 98
Query: 135 GGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQ 194
L + ++ +F++ + G+F+ GE+D R YTA+S SIL L E++
Sbjct: 99 DALDVLGKDRKVRLISFIRGNQLEDGSFQGDRFGEVDTRFVYTALSALSILGELTSEVVD 158
Query: 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDAL--IG-WVVFR 251
+++L C ++GG P +E+H F L A+ + N+ D L D L IG W+ R
Sbjct: 159 PAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIANKLDMLSDDQLEEIGWWLCER 218
Query: 252 QGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPT 293
Q EGG GR +KL D CYS+W A++ R I E T
Sbjct: 219 QLPEGGLNGRPSKLPDVCYSWWVLSSLAIIGRLDWINYEKLT 260
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 2/170 (1%)
Query: 76 YWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLG 135
Y L ++++LGE +++ D ++F+ +C + +GG+G P H A + + AL
Sbjct: 140 YTALSALSILGELT-SEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIAN 198
Query: 136 GEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQN 195
L ++ +L + P G + DV + +S +I+ LD +
Sbjct: 199 KLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDVCYSWWVLSSLAIIGRLDWINYEK 258
Query: 196 VGNYILSCQ-TYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDAL 244
+ +IL CQ +GGI+ P +E +T G+A + L+ + + +D +
Sbjct: 259 LTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLMGYDNLVPIDPI 308
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 72 PWICY--WILHSMALLGEFVDADLEDRTIEFLSRCQD-PNGGYGGGPGQMPHLATTYAAV 128
P +CY W+L S+A++G + E T EF+ +CQD GG P + T V
Sbjct: 233 PDVCYSWWVLSSLAIIGRLDWINYEKLT-EFILKCQDEKKGGISDRPENEVDVFHTVFGV 291
Query: 129 NALISLGGEKSLP 141
L +G + +P
Sbjct: 292 AGLSLMGYDNLVP 304
>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cwg2 PE=3 SV=1
Length = 355
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 126/277 (45%), Gaps = 40/277 (14%)
Query: 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEF--VDADLEDRTIE 99
MEL R H+ + R L + D R + ++ L + LL +D D + IE
Sbjct: 1 MELTRAKHIAFFKRHLILFPTPYEEHDCERTVLAFFCLLGLDLLNALNTIDDDDKKSWIE 60
Query: 100 FLSR---CQDPNG-GYGGGPG-----------QMPHLATTYAAVNALISLGGEKSLPSIN 144
++ + ++ G Y G Q P LA T ++ L+ LG +L I+
Sbjct: 61 WIYKNYVTKESKGIKYSGFQAYRTGIQPISFEQEPQLAGTVFSICCLLFLGD--NLSRID 118
Query: 145 RSKVYTFLKCMKDPSGAFR---MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYIL 201
R + F++ K G FR + + D+R Y A ++AS+L+ + L ++ YI
Sbjct: 119 RDLIKNFVELCKTSQGHFRSIAVPSCSDQDMRQLYMATTIASLLDFSLSDPLCSI-QYIK 177
Query: 202 SCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI------------NEADRL-----DLDAL 244
SCQ YEGG + P EAH G TFC LA+ LI N++ L ++ L
Sbjct: 178 SCQRYEGGFSLLPYGEAHAGATFCALASWSLILKMIPNSSLNTSNQSYNLMDCVPKVERL 237
Query: 245 IGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 281
I W+ RQ GG GRTNK VD CY++W LL
Sbjct: 238 IRWLASRQLSSGGLNGRTNKDVDTCYAYWVLSSLKLL 274
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 76 YWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLG 135
YW+L S+ LL D + L Q GG+ PG+ P + + + A+ +
Sbjct: 265 YWVLSSLKLLDALPFIDGGELEKYLLLHAQHALGGFSKTPGEFPDVLHSALGLYAM-AYQ 323
Query: 136 GEKSLPSIN 144
+KS P +N
Sbjct: 324 DDKSFPKVN 332
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
discoideum GN=pggt1b PE=2 SV=1
Length = 352
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 8/174 (4%)
Query: 118 MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFL-KCMKDPSGAFR-MHDAGEIDVRAC 175
+P TY A+ L LG + S +N+ + L K ++ GA + G+ D+R
Sbjct: 112 LPSTPNTYCALLILRILGDDFS--GVNKKAIIDSLRKRQRESDGAISGSPNVGDYDLRHL 169
Query: 176 YTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 235
++A +++ IL+ ++ +YI SC +YE P EAHGG T+C +A++ L+
Sbjct: 170 FSACAISFILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGR 229
Query: 236 ADRLD--LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSI 287
D L+ + L W+V +Q GF GRTNK D CY+FW G ++ R+ I
Sbjct: 230 LDVLEPFKEQLTFWLVKKQIT--GFCGRTNKDPDTCYAFWIGASLMMIDRYDLI 281
>sp|P18898|PGTB1_YEAST Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1
SV=2
Length = 376
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 128/327 (39%), Gaps = 61/327 (18%)
Query: 47 KNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLED----------R 96
K H ++ R LQ L S D NR I ++ + +++ V A D +
Sbjct: 14 KKHRKFFERHLQLLPSSHQGHDVNRMAIIFYSISGLSIFDVNVSAKYGDHLGWMRKHYIK 73
Query: 97 TIEFLSRCQDPNGGYGGGPGQMPHLAT-----TYAAVNALISLGGEKSLPSI--NRSKVY 149
T+ + +G G +PH T T A+ ++I L + +I RS
Sbjct: 74 TVLDDTENTVISGFVGSLVMNIPHATTINLPNTLFALLSMIMLRDYEYFETILDKRSLAR 133
Query: 150 TFLKCMKDPSGAF------RMHDAGEID---VRACYTAISVASILNILDDELL------Q 194
KC + G+F + + +D +R CY A+++ I E +
Sbjct: 134 FVSKCQRPDRGSFVSCLDYKTNCGSSVDSDDLRFCYIAVAILYICGCRSKEDFDEYIDTE 193
Query: 195 NVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD---LDALIGWVVFR 251
+ YI+S Q Y G +E H GYT C L+ + L++ ++L + I W++ R
Sbjct: 194 KLLGYIMSQQCYNGAFGAH--NEPHSGYTSCALSTLALLSSLEKLSDKFKEDTITWLLHR 251
Query: 252 Q-------------------GVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESP 292
Q +GGFQGR NK D CY+FW LL + ++ ++
Sbjct: 252 QVSSHGCMKFESELNASYDQSDDGGFQGRENKFADTCYAFWCLNSLHLLTKDWKMLCQTE 311
Query: 293 TPVDQRGAECSIDNTQTTTASDVSEGD 319
+ +D TQ T S+ D
Sbjct: 312 LVTNYL-----LDRTQKTLTGGFSKND 333
>sp|Q0WKY2|CCR4E_ARATH Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis
thaliana GN=CCR4-5 PE=2 SV=2
Length = 454
Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 228 AAMILINEADRLD-LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFH 285
A+++ + E DR D LD L+ +G G + RT + DGC FW+ +F LL H
Sbjct: 146 ASILCLQEVDRFDDLDVLLK----NRGFRGVHKSRTGEASDGCAIFWKENLFELLDHQH 200
>sp|P40017|YAT2_YEAST Carnitine O-acetyltransferase YAT2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YAT2 PE=1 SV=1
Length = 923
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 284 FHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHRERE 341
F ++ G + +PV QRG + D + TASD+ + D SSDE + F R+R+
Sbjct: 174 FLNLFGTTRSPVFQRGEVENFDLNKPYTASDLEDPDYSSDEDDNDEPTQKDFDDRKRK 231
>sp|Q9LS39|CCR4C_ARATH Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis
thaliana GN=CCR4-3 PE=2 SV=2
Length = 448
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 230 MILINEADR-LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283
+I + E D+ DL +++ + G G ++ RT VDGC FW+ F +L R
Sbjct: 157 IISMQEVDKYFDLFSMME----KAGYAGSYKRRTGDNVDGCAMFWKADRFGVLER 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,574,619
Number of Sequences: 539616
Number of extensions: 6091558
Number of successful extensions: 13738
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13579
Number of HSP's gapped (non-prelim): 64
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)