Query 018000
Match_columns 362
No_of_seqs 307 out of 1529
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:16:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0365 Beta subunit of farnes 100.0 7.4E-97 2E-101 701.8 23.6 310 4-361 33-343 (423)
2 PLN02710 farnesyltranstransfer 100.0 6.2E-88 1.3E-92 675.7 33.4 358 1-360 1-362 (439)
3 cd02893 FTase Protein farnesyl 100.0 1.5E-68 3.2E-73 517.6 27.4 271 46-360 1-272 (299)
4 COG5029 CAL1 Prenyltransferase 100.0 4.9E-67 1.1E-71 494.3 19.2 262 42-360 24-287 (342)
5 PLN03201 RAB geranylgeranyl tr 100.0 3.1E-65 6.8E-70 497.8 25.3 236 42-282 6-243 (316)
6 cd02895 GGTase-I Geranylgerany 100.0 4.4E-64 9.5E-69 488.0 24.2 236 46-283 1-260 (307)
7 KOG0367 Protein geranylgeranyl 100.0 3.4E-61 7.3E-66 450.8 18.7 244 42-288 9-277 (347)
8 cd02894 GGTase-II Geranylgeran 100.0 5.8E-60 1.3E-64 455.0 25.3 236 44-283 1-240 (287)
9 KOG0366 Protein geranylgeranyl 100.0 1.3E-58 2.8E-63 427.0 19.7 246 42-292 16-263 (329)
10 cd02890 PTase Protein prenyltr 100.0 4.1E-57 8.9E-62 433.5 25.3 238 46-284 1-240 (286)
11 cd02895 GGTase-I Geranylgerany 100.0 2.1E-45 4.5E-50 357.2 23.3 238 43-281 48-307 (307)
12 cd02894 GGTase-II Geranylgeran 100.0 1.7E-45 3.6E-50 354.6 22.4 235 43-281 48-287 (287)
13 cd02890 PTase Protein prenyltr 100.0 1.2E-41 2.5E-46 326.6 23.1 237 42-281 45-286 (286)
14 PLN03201 RAB geranylgeranyl tr 100.0 5.7E-40 1.2E-44 320.2 22.3 236 43-283 55-293 (316)
15 cd02893 FTase Protein farnesyl 100.0 8.1E-36 1.7E-40 289.1 23.7 234 43-280 46-298 (299)
16 PLN02710 farnesyltranstransfer 100.0 1.8E-35 4E-40 297.1 22.6 240 43-286 91-394 (439)
17 COG5029 CAL1 Prenyltransferase 100.0 3.1E-29 6.8E-34 237.7 15.8 190 43-237 125-318 (342)
18 KOG0367 Protein geranylgeranyl 100.0 1.1E-28 2.4E-33 232.0 16.9 193 42-236 123-322 (347)
19 KOG0366 Protein geranylgeranyl 100.0 3.6E-28 7.8E-33 225.2 19.1 236 43-283 65-303 (329)
20 cd00688 ISOPREN_C2_like This g 100.0 3.1E-26 6.8E-31 214.0 24.4 236 47-284 2-254 (300)
21 cd00688 ISOPREN_C2_like This g 99.9 2.4E-24 5.3E-29 201.2 23.4 234 42-280 50-299 (300)
22 KOG0365 Beta subunit of farnes 99.9 1.9E-23 4.2E-28 200.1 14.4 187 42-235 169-371 (423)
23 TIGR03463 osq_cycl 2,3-oxidosq 99.8 2.8E-19 6E-24 189.2 21.8 182 89-271 397-617 (634)
24 PF13249 Prenyltrans_2: Prenyl 99.8 5.8E-20 1.3E-24 151.5 7.9 109 98-212 1-113 (113)
25 cd02892 SQCY_1 Squalene cyclas 99.8 5.1E-18 1.1E-22 180.0 20.3 183 74-260 376-604 (634)
26 TIGR01507 hopene_cyclase squal 99.8 2.5E-17 5.4E-22 174.4 21.9 210 46-261 338-599 (635)
27 cd02889 SQCY Squalene cyclase 99.8 4.2E-17 9.1E-22 159.8 21.0 168 89-260 114-318 (348)
28 PLN03012 Camelliol C synthase 99.8 5.7E-18 1.2E-22 180.1 15.6 181 87-271 508-735 (759)
29 PLN02993 lupeol synthase 99.7 8.3E-17 1.8E-21 171.6 20.1 182 88-270 509-734 (763)
30 cd02889 SQCY Squalene cyclase 99.7 4E-16 8.6E-21 152.9 22.5 231 48-281 3-291 (348)
31 TIGR01787 squalene_cyclas squa 99.7 2.3E-16 4.9E-21 166.8 20.6 177 89-270 385-601 (621)
32 PF13249 Prenyltrans_2: Prenyl 99.7 2.8E-17 6.1E-22 135.4 7.7 108 149-259 1-112 (113)
33 cd02892 SQCY_1 Squalene cyclas 99.6 2.2E-14 4.7E-19 152.4 22.8 214 46-260 280-546 (634)
34 TIGR01507 hopene_cyclase squal 99.6 6.5E-14 1.4E-18 148.5 23.8 237 45-282 288-572 (635)
35 TIGR03463 osq_cycl 2,3-oxidosq 99.6 6.9E-14 1.5E-18 148.3 22.2 235 46-282 278-578 (634)
36 TIGR01787 squalene_cyclas squa 99.6 1.2E-13 2.7E-18 146.1 22.2 236 46-282 269-562 (621)
37 COG1689 Uncharacterized protei 99.6 2.8E-14 6.2E-19 130.0 12.3 185 91-282 5-272 (274)
38 PLN02993 lupeol synthase 99.5 4.3E-12 9.3E-17 135.8 21.1 193 68-261 414-661 (763)
39 cd02896 complement_C3_C4_C5 Pr 99.4 5.6E-12 1.2E-16 122.3 19.1 199 47-260 48-283 (297)
40 PLN03012 Camelliol C synthase 99.4 5.1E-11 1.1E-15 127.5 22.8 193 69-262 415-662 (759)
41 COG1689 Uncharacterized protei 99.4 2.1E-11 4.5E-16 111.4 16.1 159 60-233 111-271 (274)
42 cd02897 A2M_2 Proteins similar 99.4 1.1E-10 2.4E-15 112.6 21.9 200 46-260 44-278 (292)
43 PF00432 Prenyltrans: Prenyltr 99.3 2.2E-12 4.8E-17 90.2 5.6 43 192-234 2-44 (44)
44 KOG0497 Oxidosqualene-lanoster 99.3 7.4E-11 1.6E-15 122.7 14.6 237 12-259 413-720 (760)
45 PF00432 Prenyltrans: Prenyltr 99.3 4E-12 8.7E-17 88.9 3.6 44 239-282 1-44 (44)
46 cd02896 complement_C3_C4_C5 Pr 99.1 1.5E-09 3.3E-14 105.3 16.3 154 94-262 54-228 (297)
47 cd02897 A2M_2 Proteins similar 99.1 1.1E-08 2.4E-13 98.7 19.4 184 60-259 11-218 (292)
48 PF13243 Prenyltrans_1: Prenyl 99.1 7.8E-11 1.7E-15 96.7 3.5 104 146-253 2-107 (109)
49 PF13243 Prenyltrans_1: Prenyl 99.0 4.1E-10 8.9E-15 92.4 5.6 105 95-205 2-107 (109)
50 cd02891 A2M_like Proteins simi 98.9 1E-07 2.2E-12 90.6 16.8 73 93-165 50-123 (282)
51 PF07678 A2M_comp: A-macroglob 98.7 5.5E-07 1.2E-11 85.2 14.4 188 58-260 10-230 (246)
52 cd02891 A2M_like Proteins simi 98.3 4.6E-06 1E-10 79.3 11.3 107 146-252 52-171 (282)
53 KOG0497 Oxidosqualene-lanoster 98.3 1.9E-05 4E-10 83.1 14.6 231 51-285 388-696 (760)
54 COG1657 SqhC Squalene cyclase 98.0 1.4E-05 3E-10 82.6 8.7 209 43-261 229-481 (517)
55 PF07678 A2M_comp: A-macroglob 98.0 3.8E-05 8.3E-10 72.6 10.7 150 99-260 4-170 (246)
56 COG1657 SqhC Squalene cyclase 97.0 0.0024 5.2E-08 66.3 8.5 199 69-273 197-435 (517)
57 KOG1366 Alpha-macroglobulin [P 96.2 0.076 1.7E-06 61.6 14.5 201 57-261 930-1197(1436)
58 TIGR02474 pec_lyase pectate ly 96.1 0.069 1.5E-06 51.9 11.7 116 91-206 66-221 (290)
59 TIGR02474 pec_lyase pectate ly 95.7 0.029 6.2E-07 54.5 6.8 95 167-261 38-159 (290)
60 PLN02279 ent-kaur-16-ene synth 94.0 0.26 5.6E-06 54.2 9.4 210 44-283 33-285 (784)
61 PF07944 DUF1680: Putative gly 90.8 4.2 9E-05 42.8 13.2 181 74-261 62-280 (520)
62 PF01122 Cobalamin_bind: Eukar 90.2 0.73 1.6E-05 45.6 6.5 140 119-288 139-297 (326)
63 PLN02592 ent-copalyl diphospha 82.7 2.3 4.9E-05 47.1 5.8 56 95-154 118-175 (800)
64 KOG1366 Alpha-macroglobulin [P 80.0 24 0.00052 41.8 13.0 67 46-112 966-1044(1436)
65 PF09492 Pec_lyase: Pectic aci 79.4 5.2 0.00011 39.1 6.4 118 93-210 63-220 (289)
66 PLN02592 ent-copalyl diphospha 75.2 65 0.0014 36.0 14.0 126 44-180 282-410 (800)
67 PF01122 Cobalamin_bind: Eukar 74.9 3.2 7E-05 41.2 3.7 63 94-164 217-279 (326)
68 PF10022 DUF2264: Uncharacteri 69.8 1.3E+02 0.0028 30.4 19.0 224 44-282 73-345 (361)
69 COG1331 Highly conserved prote 68.9 84 0.0018 34.2 12.7 160 86-262 177-366 (667)
70 PF09492 Pec_lyase: Pectic aci 65.0 7.7 0.00017 37.9 3.9 114 169-282 35-191 (289)
71 PF05817 Ribophorin_II: Oligos 64.9 1.1E+02 0.0023 33.4 12.8 144 69-231 121-268 (636)
72 PF10022 DUF2264: Uncharacteri 55.8 2.3E+02 0.005 28.5 16.3 187 44-236 132-347 (361)
73 cd00249 AGE AGE domain; N-acyl 45.7 3E+02 0.0065 26.9 12.2 116 93-210 15-158 (384)
74 PF07470 Glyco_hydro_88: Glyco 42.7 3.3E+02 0.0071 26.5 11.9 66 192-257 216-294 (336)
75 PF05817 Ribophorin_II: Oligos 42.3 4.9E+02 0.011 28.4 18.7 89 69-161 46-162 (636)
76 PLN02279 ent-kaur-16-ene synth 42.1 3.9E+02 0.0086 29.9 12.8 136 45-197 243-380 (784)
77 PF15221 LEP503: Lens epitheli 34.6 16 0.00034 26.8 0.4 7 351-357 47-53 (61)
78 PF07944 DUF1680: Putative gly 33.6 1.1E+02 0.0023 32.3 6.6 57 192-248 84-157 (520)
79 PF15144 DUF4576: Domain of un 27.9 53 0.0012 25.9 2.3 32 182-213 47-78 (88)
80 PF15144 DUF4576: Domain of un 26.3 55 0.0012 25.8 2.2 29 82-114 50-78 (88)
81 PF05426 Alginate_lyase: Algin 23.4 1.4E+02 0.003 27.9 4.9 107 126-234 118-235 (272)
82 PRK13619 psbV cytochrome c-550 20.7 1.6E+02 0.0036 26.2 4.4 60 44-114 92-157 (160)
No 1
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-97 Score=701.81 Aligned_cols=310 Identities=54% Similarity=0.918 Sum_probs=291.6
Q ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHH
Q 018000 4 DTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMA 83 (362)
Q Consensus 4 ~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~ 83 (362)
||..+.|.||++|.+||..|.++|..++....+.+..++.| |+||..||.+.|++||..|++||+||||++||++++|+
T Consensus 33 Dd~~v~t~ts~eQ~~~Et~v~~vl~~f~~~~~~~~~~~~~~-r~kH~~YL~~~Lr~Lp~~~~~LDASR~Wm~YWil~sl~ 111 (423)
T KOG0365|consen 33 DDLHVDTVTSIEQKETETDVFEVLQSFEEISDDDPRLEPIF-RQKHLMYLDKMLRQLPSQYTCLDASRPWMCYWILNSLA 111 (423)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHH-HHHHHHHHHHHHHhCCCcccccccCcchhHHHHHHHHH
Confidence 45568999999999999999999998876644434344556 99999999999999999999999999999999999999
Q ss_pred HhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCcee
Q 018000 84 LLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR 163 (362)
Q Consensus 84 lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~ 163 (362)
||+..++++..+++|+||..||.|.|||||||||.+|+++|||||++|+++|.+++++.|||++++.||.++|+|||||+
T Consensus 112 lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFr 191 (423)
T KOG0365|consen 112 LLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFR 191 (423)
T ss_pred HhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHH
Q 018000 164 MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDA 243 (362)
Q Consensus 164 ~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~ 243 (362)
+|.+||+|+|++|||+++++|+|+.++++++++.+||.+|||||||||+.|+.||||||||||+|||+||++.+.+|+++
T Consensus 192 mh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~ 271 (423)
T KOG0365|consen 192 MHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEK 271 (423)
T ss_pred eecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHHHHhhhhhccCCCCCCcccCCcccccCCCccccCCCCCCCCCCC
Q 018000 244 LIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSS 322 (362)
Q Consensus 244 l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (362)
+++|.++||+ +||||+||+||+||+|||||++|+++||++.....+..+ +
T Consensus 272 Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~----------------------------~- 322 (423)
T KOG0365|consen 272 LLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSL----------------------------E- 322 (423)
T ss_pred HHHHHHHhhhhhhccccccccchhhhhHHHHhcchHHHHHHHhcccccch----------------------------h-
Confidence 9999999999 999999999999999999999999999999876544332 1
Q ss_pred cccccCCCcccccccccCcccccHHHHHHHHHHccCCcC
Q 018000 323 DEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQI 361 (362)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~~~ 361 (362)
.++||.+|||+|||.|||.+.
T Consensus 323 ------------------~~~F~~~~LqeYIL~CcQ~~~ 343 (423)
T KOG0365|consen 323 ------------------HLLFNKEALQEYILLCCQSPS 343 (423)
T ss_pred ------------------hhhcCHHHHHHHHHhhccCCC
Confidence 279999999999999999864
No 2
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=6.2e-88 Score=675.73 Aligned_cols=358 Identities=66% Similarity=1.113 Sum_probs=311.1
Q ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHH
Q 018000 1 MEPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILH 80 (362)
Q Consensus 1 ~~~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~ 80 (362)
++-+|++++|.||++|.+||+.|.++|+.+...+++.++.++.|.|++|++||+++|+.||.+|+++|++|+|++||+|+
T Consensus 1 ~~~~~~~~~t~t~~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~H~~yl~~~l~~lp~~~~~lDa~r~~~~Yw~L~ 80 (439)
T PLN02710 1 RVSSELPRLTVTQREQWKVEAKVFDIYRSFASAPPNAQSVMLELWREKHLEYLTRGLRQLGPSFSVLDANRPWLCYWILH 80 (439)
T ss_pred CCcccCCCCCcCHHHHHHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHH
Confidence 45678999999999999999999999998876655555456789999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCC
Q 018000 81 SMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSG 160 (362)
Q Consensus 81 sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dG 160 (362)
+|+|||.+++++.++++++||.+||+++|||+++|++.+|+++||+||++|.+||++++++.|||+++++||+++|++||
T Consensus 81 sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dG 160 (439)
T PLN02710 81 SIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSG 160 (439)
T ss_pred HHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCC
Confidence 99999998888899999999999999999999999999999999999999999998778899999999999999999999
Q ss_pred ceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCccc
Q 018000 161 AFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD 240 (362)
Q Consensus 161 gF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d 240 (362)
||.+++++|.|+|+||||+++++||+++++++++++++||++||++||||++.|+.|||++|||||||+|+||++.+.+|
T Consensus 161 gF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id 240 (439)
T PLN02710 161 GFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLD 240 (439)
T ss_pred CcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccC
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHHHhhhhhccCCCCCCcccCCcccccCC-CccccCCCCCCCC
Q 018000 241 LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPTPVDQRGAECSIDN-TQTTTASDVSEGD 319 (362)
Q Consensus 241 ~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 319 (362)
++++++||++||..+|||+|||||+||+|||||++|+|+||+++..++.+++.....+..+.+.+. ++.++.++ ..++
T Consensus 241 ~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 319 (439)
T PLN02710 241 LPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSG-KDDA 319 (439)
T ss_pred HHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhccccccccccccccccccccccccccccc-cccc
Confidence 999999999999999999999999999999999999999999998775433311111111111111 11111111 1111
Q ss_pred CCCcccccCCCccccccc---ccCcccccHHHHHHHHHHccCCc
Q 018000 320 GSSDEISSQGDEHCHFQH---REREPLFHSIALQRYLLLCSQVQ 360 (362)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~l~~yil~c~q~~ 360 (362)
+.. .+.++.++|+.|.. ..+++|||++|||+|||.|||.+
T Consensus 320 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~ 362 (439)
T PLN02710 320 GDT-DSADYSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVL 362 (439)
T ss_pred ccc-ccccccccccccccccccccccccCHHHHHHHHHHHcCCC
Confidence 111 45677888888833 36788999999999999999975
No 3
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=1.5e-68 Score=517.63 Aligned_cols=271 Identities=58% Similarity=1.055 Sum_probs=253.2
Q ss_pred HHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhH
Q 018000 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTY 125 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty 125 (362)
|++|++||++++..+|++|+++|++|+|++||++++|++|+..++...++++++||++||+++|||++++++++|+.+||
T Consensus 1 ~~~h~~~~~~~l~~~p~~~~~~d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty 80 (299)
T cd02893 1 REKHIKYLKKSLRQLPSSFTSLDASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTY 80 (299)
T ss_pred ChHHHHHHHHHhhcCCccccccccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHH
Confidence 57999999999999999999999999999999999999999877778899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccC
Q 018000 126 AAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQT 205 (362)
Q Consensus 126 ~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~ 205 (362)
+|+++|.+++.++.++.+||+++++||+++|++||||+..+++|+|+|++|||++++.||+.+++++++++++||++||+
T Consensus 81 ~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~ 160 (299)
T cd02893 81 AAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQT 160 (299)
T ss_pred HHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCC
Confidence 99999999998666889999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCC-CCcccCCCCCCCcccccchHHHHHHHHhhh
Q 018000 206 YEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRRF 284 (362)
Q Consensus 206 ~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~-eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~ 284 (362)
+||||++.|+.|+|++||||||++|++++..+.+|.+++++||++||.. +|||+|||||+||+|||||++++|+|++++
T Consensus 161 ~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~ 240 (299)
T cd02893 161 YEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAI 240 (299)
T ss_pred CCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998889999999999999995 999999999999999999999999999988
Q ss_pred hhccCCCCCCcccCCcccccCCCccccCCCCCCCCCCCcccccCCCcccccccccCcccccHHHHHHHHHHccCCc
Q 018000 285 HSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQ 360 (362)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~~ 360 (362)
.+..++.. +++..+++|+++|++|||.|||..
T Consensus 241 ~~~~~~~~--------------------------------------------~~~~~~~~~~~~l~~~il~~~q~~ 272 (299)
T cd02893 241 LNAEKKFD--------------------------------------------DSAEGTLFDQEALQEYILLCCQSE 272 (299)
T ss_pred hccccccc--------------------------------------------ccccccccCHHHHHHHHHHhcCCC
Confidence 76443110 011237999999999999999974
No 4
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-67 Score=494.30 Aligned_cols=262 Identities=39% Similarity=0.712 Sum_probs=249.3
Q ss_pred hhhhHHHHHHHHHHh-ccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000 42 MELQRKNHVEYLLRG-LQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120 (362)
Q Consensus 42 ~~l~r~~H~~yl~~~-l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh 120 (362)
+.|.+++|++|+... ...+|.-|.-++++|+|.+||..+++.+|+.......+++.+.+++.|+++.|||+++|+|.+|
T Consensus 24 l~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~h 103 (342)
T COG5029 24 LQLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSH 103 (342)
T ss_pred cccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchh
Confidence 679999999999987 5678889999999999999999999999999765678999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI 200 (362)
Q Consensus 121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI 200 (362)
+++||+||++|++++.-..++.+||+.+++||..+|+|||+|+..-.||+|+|++|+|+++++|++.++.++++.+++||
T Consensus 104 L~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl 183 (342)
T COG5029 104 LASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYL 183 (342)
T ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 99999999999999876678899999999999999999999999988999999999999999999999999999999999
Q ss_pred HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCccc-HHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHH
Q 018000 201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLD-LDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA 279 (362)
Q Consensus 201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d-~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ 279 (362)
++|||||||||..|+.|||++|||||||+|++|++.+.++ ++++++||++||..+|||+||+||+||+|||||+++++.
T Consensus 184 ~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~ 263 (342)
T COG5029 184 KKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLA 263 (342)
T ss_pred HHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHH
Confidence 9999999999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCCCCCcccCCcccccCCCccccCCCCCCCCCCCcccccCCCcccccccccCcccccHHHHHHHHHHccCC
Q 018000 280 LLRRFHSIIGESPTPVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQV 359 (362)
Q Consensus 280 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~ 359 (362)
||++. .++|++.|.+|||.|||.
T Consensus 264 il~~~---------------------------------------------------------~~in~e~L~~yiL~c~q~ 286 (342)
T COG5029 264 ILGKL---------------------------------------------------------DFINTEELTDYILDCQQE 286 (342)
T ss_pred hcchh---------------------------------------------------------hhcCHHHHHHHHHhhccc
Confidence 99833 379999999999999997
Q ss_pred c
Q 018000 360 Q 360 (362)
Q Consensus 360 ~ 360 (362)
.
T Consensus 287 ~ 287 (342)
T COG5029 287 T 287 (342)
T ss_pred C
Confidence 3
No 5
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=3.1e-65 Score=497.81 Aligned_cols=236 Identities=33% Similarity=0.603 Sum_probs=224.6
Q ss_pred hhhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCC
Q 018000 42 MELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMP 119 (362)
Q Consensus 42 ~~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~s 119 (362)
++|.+++|++||.++++ +|++|.+. |++|+|.+||++++|++|+. ++..+++++++||++||+++|||++.|++.+
T Consensus 6 ~~l~~~kh~~yl~~~~~-~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~-~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~ 83 (316)
T PLN03201 6 GELVVDKHVRYIKSLEK-KKDSFESVVMEHLRMNGAYWGLTALDLLGK-LDDVDRDEVVSWVMRCQHESGGFGGNTGHDP 83 (316)
T ss_pred hhccHHHHHHHHHHhCC-CCCCccccccccchHHHHHHHHHHHHHhCC-CccccHHHHHHHHHHhcCCCCCcCCCCCCcc
Confidence 57999999999999665 89999775 88999999999999999997 6667889999999999999999999999999
Q ss_pred chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000 120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY 199 (362)
Q Consensus 120 hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y 199 (362)
|+.+||+|+++|.+++. ++.+|++++++||.++|++||||.+++++|.|+|++|||++++.|++..+..+++++++|
T Consensus 84 h~~~Ty~al~~L~ll~~---~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~ 160 (316)
T PLN03201 84 HILYTLSAVQILALFDR---LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDY 160 (316)
T ss_pred cHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 99999999999999953 678999999999999999999999999999999999999999999998887889999999
Q ss_pred HHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHH
Q 018000 200 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA 279 (362)
Q Consensus 200 I~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ 279 (362)
|++||++||||+..|+.|||++|||||+|+|+++|..+.+|.+++++||++||..+|||+|||||+||+|||||++++|+
T Consensus 161 i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ 240 (316)
T PLN03201 161 IVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI 240 (316)
T ss_pred HHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHh
Q 018000 280 LLR 282 (362)
Q Consensus 280 ll~ 282 (362)
||+
T Consensus 241 ll~ 243 (316)
T PLN03201 241 IID 243 (316)
T ss_pred Hhc
Confidence 995
No 6
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=4.4e-64 Score=488.03 Aligned_cols=236 Identities=38% Similarity=0.667 Sum_probs=222.6
Q ss_pred HHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCC--CHHhHHHHHHHHhhcc----CCCCCCCCCCC---
Q 018000 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFV--DADLEDRTIEFLSRCQ----DPNGGYGGGPG--- 116 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~--~~~~~~~~i~~l~~~Q----~~dGGFgg~pg--- 116 (362)
++||++|++++++.||.+|+++|++|+|++||+|++|.+|+.+. +.++++++++||.+|| +++|||+++++
T Consensus 1 ~~~H~~y~~~~l~~lp~~~~~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~ 80 (307)
T cd02895 1 KKKHVKFFQRCLQLLPSSYQSLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGL 80 (307)
T ss_pred ChHHHHHHHHHhhhCCchhhhhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCcc
Confidence 47899999999999999999999999999999999999999865 5688999999999999 99999999887
Q ss_pred -------CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc---CCCcccchHHHHHHHHHHhc
Q 018000 117 -------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD---AGEIDVRACYTAISVASILN 186 (362)
Q Consensus 117 -------~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~---~ge~D~r~~Y~al~~~~LL~ 186 (362)
+.+|+.+||+|+++|.+|+++ ++.+||+++++||+++|++||||...+ ++|.|+|+||||+++++||+
T Consensus 81 ~~~~~~~~~~~l~~ty~Al~~L~lL~~~--~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~ 158 (307)
T cd02895 81 PGTASKYDTGNLAMTYFALLSLLILGDD--LSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD 158 (307)
T ss_pred ccccccCCcccHHHHHHHHHHHHHhCCc--hhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence 589999999999999999864 556899999999999999999999987 89999999999999999999
Q ss_pred cCC--HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC---cccHHHHHHHHHhCCCCCCcccCC
Q 018000 187 ILD--DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD---RLDLDALIGWVVFRQGVEGGFQGR 261 (362)
Q Consensus 187 ~~~--~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~---~~d~~~l~~WL~~rQ~~eGGF~GR 261 (362)
..+ ..+++++++||++||++||||+..|+.|+|++|||||+++|.+|+..+ .+|.+++++||++||..+|||+||
T Consensus 159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr 238 (307)
T cd02895 159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR 238 (307)
T ss_pred CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence 876 467899999999999999999999999999999999999999999876 689999999999999999999999
Q ss_pred CCCCCcccccchHHHHHHHHhh
Q 018000 262 TNKLVDGCYSFWQGGVFALLRR 283 (362)
Q Consensus 262 ~nKlvD~CYsfW~~a~l~ll~~ 283 (362)
+||++|+|||||++|+|+||+.
T Consensus 239 ~~k~~D~cysfw~~a~L~iL~~ 260 (307)
T cd02895 239 PNKPADTCYSFWVGASLKLLDA 260 (307)
T ss_pred CCCCCccchhhHHHHHHHHcCc
Confidence 9999999999999999999963
No 7
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-61 Score=450.77 Aligned_cols=244 Identities=35% Similarity=0.640 Sum_probs=222.8
Q ss_pred hhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCC--------CCCCC
Q 018000 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPN--------GGYGG 113 (362)
Q Consensus 42 ~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~d--------GGFgg 113 (362)
.++.|+||++|++|+|+.||.+|+++|.+|+.++|+++.+|++|+. ++..+++.+|+||.+.|-.. -||-|
T Consensus 9 ~~~~~~kH~~ff~RhL~llP~~y~shd~~R~tiafFaisGLd~L~~-ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~G 87 (347)
T KOG0367|consen 9 SRFERKKHIKFFERHLQLLPSPYQSHDTNRLTIAFFAISGLDLLDA-LDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRG 87 (347)
T ss_pred chhhHHHHHHHHHHHHHhCCCcccccccchHHHHHHHHcchhhhhh-hhccchhHHHHHHHhceeccccCCCceeeeeee
Confidence 5799999999999999999999999999999999999999999998 55566999999999988532 25655
Q ss_pred C----------CCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceee-ccCCCcccchHHHHHHHH
Q 018000 114 G----------PGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM-HDAGEIDVRACYTAISVA 182 (362)
Q Consensus 114 ~----------pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~-~~~ge~D~r~~Y~al~~~ 182 (362)
. +-+.||++.||+++++|.++|++ ++.+||+.+++++..+|+|||+|.. ..++|+|||++|||++|+
T Consensus 88 sr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGdd--LsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ 165 (347)
T KOG0367|consen 88 SRSMNIPIATNTYNEPHLAMTYTSLACLVILGDD--LSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAIC 165 (347)
T ss_pred eccccCCCCCCCCcchhHHHHHHHHHHHHHHcch--HhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHH
Confidence 3 23579999999999999999986 8999999999999999999999997 467899999999999999
Q ss_pred HHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccC--C----cccHHHHHHHHHhCCCCCC
Q 018000 183 SILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA--D----RLDLDALIGWVVFRQGVEG 256 (362)
Q Consensus 183 ~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~--~----~~d~~~l~~WL~~rQ~~eG 256 (362)
+||+.+...+.++++.||++||+||||||..|+.|||+|+||||||+|+|+++. + ..+++++++|+.+||..+|
T Consensus 166 ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sg 245 (347)
T KOG0367|consen 166 YMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSG 245 (347)
T ss_pred HHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccC
Confidence 999988888999999999999999999999999999999999999999999987 3 3358999999999999999
Q ss_pred cccCCCCCCCcccccchHHHHHHHHhhhhhcc
Q 018000 257 GFQGRTNKLVDGCYSFWQGGVFALLRRFHSII 288 (362)
Q Consensus 257 GF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~ 288 (362)
||+||+||.||+||+||+|++|.||.+...++
T Consensus 246 GfqGR~NKp~DTCYaFWigasLklL~~~~~~d 277 (347)
T KOG0367|consen 246 GFQGRTNKPVDTCYAFWIGASLKLLDADWLID 277 (347)
T ss_pred CcCCCCCCCchhHHHHHHHHHHHHccchHhhh
Confidence 99999999999999999999999998765444
No 8
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=5.8e-60 Score=454.99 Aligned_cols=236 Identities=33% Similarity=0.623 Sum_probs=223.8
Q ss_pred hhHHHHHHHHHHhcc-CCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhcc-CCCCCCCCCCCCCCch
Q 018000 44 LQRKNHVEYLLRGLQ-QLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQ-DPNGGYGGGPGQMPHL 121 (362)
Q Consensus 44 l~r~~H~~yl~~~l~-~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q-~~dGGFgg~pg~~shl 121 (362)
|+++||++||+++++ .+|.+|.++|++|+|++||++++|.+|+. .+..+++++++||++|| +++|||++.+++.+|+
T Consensus 1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~-~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~ 79 (287)
T cd02894 1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQ-LERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHI 79 (287)
T ss_pred CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchH
Confidence 578999999999998 58999999999999999999999999997 45568899999999999 7899999999999999
Q ss_pred hhhHHHHHHHHHcCCCCCCChhh--HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000 122 ATTYAAVNALISLGGEKSLPSIN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY 199 (362)
Q Consensus 122 ~~Ty~Av~sL~ilg~~~~l~~id--r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y 199 (362)
.+||+|+.+|.+++. ++.+| ++++++||+++|++||||.+.++++.|+|+||||++++.|++..+..+++++++|
T Consensus 80 ~~t~~a~~~L~ll~~---~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~ 156 (287)
T cd02894 80 LSTLSAIQILALYDL---LNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDY 156 (287)
T ss_pred HHHHHHHHHHHHhhh---hhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHH
Confidence 999999999999964 45677 8999999999999999999999999999999999999999998878889999999
Q ss_pred HHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHH
Q 018000 200 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA 279 (362)
Q Consensus 200 I~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ 279 (362)
|++||++||||++.|+.|+|++||||||++|.++|+.+.++++++++||.+||..+|||+|||||.+|+|||||++++|.
T Consensus 157 l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~ 236 (287)
T cd02894 157 LLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLK 236 (287)
T ss_pred HHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHhh
Q 018000 280 LLRR 283 (362)
Q Consensus 280 ll~~ 283 (362)
+|+.
T Consensus 237 ~l~~ 240 (287)
T cd02894 237 IIGR 240 (287)
T ss_pred Hhcc
Confidence 9863
No 9
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-58 Score=427.03 Aligned_cols=246 Identities=32% Similarity=0.590 Sum_probs=229.3
Q ss_pred hhhhHHHHHHHHHHhccCCCCCc--eeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCC
Q 018000 42 MELQRKNHVEYLLRGLQQLGPSF--CSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMP 119 (362)
Q Consensus 42 ~~l~r~~H~~yl~~~l~~l~~~~--~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~s 119 (362)
.+|.++||++|+...=+ -..+| ...+.-|+..+||.+.+|++|+. +....++++|.|+++||+.+|||++.||+.|
T Consensus 16 ~~Ll~dkH~~yI~~~~~-kk~~fey~l~EhlRmsgiYWg~tal~ll~~-le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~ 93 (329)
T KOG0366|consen 16 DELLKDKHARYIESYGK-KKDSFEYCLTEHLRMSGIYWGLTALDLLGQ-LERMSREEIVSFVLSCQHEDGGFAGCPGHDP 93 (329)
T ss_pred HHHHHHHHHHHHHHhcc-ccchHHHHHHhHhhhcchhhhhhHHHHhcc-cchhhHHHHHHHHHheecCCCCcCCCCCCCh
Confidence 68999999999988332 23444 45677799999999999999998 5556799999999999999999999999999
Q ss_pred chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000 120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY 199 (362)
Q Consensus 120 hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y 199 (362)
|+.+|.+||++|++... +..+|++++..|+..+|++||+|.+...||+|+|++|||++.++||+.++..+++++++|
T Consensus 94 hll~TlsAvQiL~~yds---i~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~ 170 (329)
T KOG0366|consen 94 HLLYTLSAVQILALYDS---INVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDF 170 (329)
T ss_pred HHHHHHHHHHHHHHHcc---cccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHH
Confidence 99999999999999974 788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHH
Q 018000 200 ILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFA 279 (362)
Q Consensus 200 I~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ 279 (362)
+++|.|.|||||..||.|||++..||+|++|+++|+.+.+|.+.+-.||..||.+.||.||||.|++|+|||||++++|.
T Consensus 171 ~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~ 250 (329)
T KOG0366|consen 171 VLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLA 250 (329)
T ss_pred HHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCCC
Q 018000 280 LLRRFHSIIGESP 292 (362)
Q Consensus 280 ll~~~~~~~~~~~ 292 (362)
|++++.+++.+++
T Consensus 251 iigrl~wId~ekL 263 (329)
T KOG0366|consen 251 IIGRLHWIDREKL 263 (329)
T ss_pred HhhhhhhccHHHH
Confidence 9999988776544
No 10
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=4.1e-57 Score=433.52 Aligned_cols=238 Identities=50% Similarity=0.964 Sum_probs=227.6
Q ss_pred HHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhcc-CCCCCCCCCCCCCCchhhh
Q 018000 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQ-DPNGGYGGGPGQMPHLATT 124 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q-~~dGGFgg~pg~~shl~~T 124 (362)
+++|++||++++..+|.++...|++|+|++||+|++|.+||.+++...++++++||++|| +++|||++.+++.+|+..|
T Consensus 1 ~~~h~~~l~~~~~~~~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T 80 (286)
T cd02890 1 REKHIKYLQRCLKLLPSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAST 80 (286)
T ss_pred ChHHHHHHHHHhhcCChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHH
Confidence 479999999999989999999999999999999999999999888899999999999999 9999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhcc
Q 018000 125 YAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQ 204 (362)
Q Consensus 125 y~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ 204 (362)
|+|+.+|.+++.+ .++.+|++++++||.++|++||||+..+.++.|+|+|||+++++.+++....++++++++||++||
T Consensus 81 ~~al~~l~llg~~-~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q 159 (286)
T cd02890 81 YAAVLSLAILGDD-ALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ 159 (286)
T ss_pred HHHHHHHHHcCcc-ccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence 9999999999964 456788999999999999999999999999999999999999999999887788999999999999
Q ss_pred CCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCC-cccCCCCCCCcccccchHHHHHHHHhh
Q 018000 205 TYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEG-GFQGRTNKLVDGCYSFWQGGVFALLRR 283 (362)
Q Consensus 205 ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eG-GF~GR~nKlvD~CYsfW~~a~l~ll~~ 283 (362)
++||||+..|+.|+|+.+||||+++|.+++..+.++++++++||.+||..+| ||+||+||++|+||+||++++|.+|++
T Consensus 160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~ 239 (286)
T cd02890 160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGR 239 (286)
T ss_pred CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHccc
Confidence 9999999999999999999999999999999988999999999999999776 999999999999999999999999975
Q ss_pred h
Q 018000 284 F 284 (362)
Q Consensus 284 ~ 284 (362)
+
T Consensus 240 ~ 240 (286)
T cd02890 240 L 240 (286)
T ss_pred c
Confidence 5
No 11
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=100.00 E-value=2.1e-45 Score=357.21 Aligned_cols=238 Identities=21% Similarity=0.324 Sum_probs=218.6
Q ss_pred hhhHHHHHHHHHHhcc---CCCCCceec------------cCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCC
Q 018000 43 ELQRKNHVEYLLRGLQ---QLGPSFCSL------------DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDP 107 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~---~l~~~~~~l------------D~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~ 107 (362)
.++|++.++||.+++. ...|+|... |.++++.+||++.+|.+|+.+.+..+++++++||++||++
T Consensus 48 ~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~ 127 (307)
T cd02895 48 VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP 127 (307)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC
Confidence 5889999999999872 456778652 4689999999999999999766556899999999999999
Q ss_pred CCCCCCCC---CCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHH
Q 018000 108 NGGYGGGP---GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASI 184 (362)
Q Consensus 108 dGGFgg~p---g~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~L 184 (362)
||||++.+ +.++|+..||+||++|.+++..+. +.+|++++++||.++|++||||...+++|+|.++||||++++.+
T Consensus 128 dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~-~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~l 206 (307)
T cd02895 128 DGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSE-EDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSL 206 (307)
T ss_pred CCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCcc-ccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHH
Confidence 99999987 889999999999999999996422 35789999999999999999999999999999999999999999
Q ss_pred hccCC---HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCC-CCCcccC
Q 018000 185 LNILD---DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQG 260 (362)
Q Consensus 185 L~~~~---~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~-~eGGF~G 260 (362)
|+..+ .++.+++++||++||+++|||++.|+.++|+.||||++|+|.+|++.+.+|.+++.+||.++|. .+|||++
T Consensus 207 L~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~ 286 (307)
T cd02895 207 LGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAK 286 (307)
T ss_pred cCCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCC
Confidence 99875 6889999999999999999999999999999999999999999999988999999999999886 7899999
Q ss_pred CCCCCCcccccchHHHHHHHH
Q 018000 261 RTNKLVDGCYSFWQGGVFALL 281 (362)
Q Consensus 261 R~nKlvD~CYsfW~~a~l~ll 281 (362)
||.|.+|.|+|||.+++|.|+
T Consensus 287 ~p~~~~D~~ht~~~la~Lsl~ 307 (307)
T cd02895 287 NPDSHPDPLHSYLGLAALSLI 307 (307)
T ss_pred CCCCCCChhHHHHHHHHHHhC
Confidence 999999999999999999875
No 12
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=100.00 E-value=1.7e-45 Score=354.58 Aligned_cols=235 Identities=20% Similarity=0.302 Sum_probs=216.1
Q ss_pred hhhHHHHHHHHHHhccCCCCCceeccCCh--hHHHHHHHHHHHHhCCCCCHH--hHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000 43 ELQRKNHVEYLLRGLQQLGPSFCSLDANR--PWICYWILHSMALLGEFVDAD--LEDRTIEFLSRCQDPNGGYGGGPGQM 118 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~~l~~~~~~lD~sr--~w~~Yw~l~sL~lLg~~~~~~--~~~~~i~~l~~~Q~~dGGFgg~pg~~ 118 (362)
.++|++|++||++++...+++|...+.++ +..+|.++.+|.+|+. ++.. .++++++||++||++||||++.++.+
T Consensus 48 ~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~-~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e 126 (287)
T cd02894 48 RLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDL-LNKIDENKEKIAKFIKGLQNEDGSFSGDKWGE 126 (287)
T ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHcCCCCCeecCCCCC
Confidence 47899999999998867799998876554 4567899999999864 3333 48999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHH
Q 018000 119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 198 (362)
Q Consensus 119 shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~ 198 (362)
+|+..||+|+++|.+++. .+.++++++++||.++|++||||..++++|+|++.||||++++.+++..+..+++++++
T Consensus 127 ~d~~~ty~a~~~l~ll~~---~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~ 203 (287)
T cd02894 127 VDTRFSYCAVLCLTLLGK---LDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGW 203 (287)
T ss_pred chHHHHHHHHHHHHHhCC---cchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHH
Confidence 999999999999999974 56788999999999999999999999999999999999999999999887788999999
Q ss_pred HHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHH
Q 018000 199 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGV 277 (362)
Q Consensus 199 yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~ 277 (362)
||++||+++|||++.|+.++|+.||||++++|++++..+.+|.+++.+||.++|. .+|||++||+|.+|.|||||.+++
T Consensus 204 ~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~ 283 (287)
T cd02894 204 WLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAG 283 (287)
T ss_pred HHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHH
Confidence 9999999999999999999999999999999999999888999999999999996 789999999999999999999999
Q ss_pred HHHH
Q 018000 278 FALL 281 (362)
Q Consensus 278 l~ll 281 (362)
|.||
T Consensus 284 Lsl~ 287 (287)
T cd02894 284 LSLL 287 (287)
T ss_pred HHhC
Confidence 9875
No 13
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=100.00 E-value=1.2e-41 Score=326.58 Aligned_cols=237 Identities=19% Similarity=0.283 Sum_probs=217.1
Q ss_pred hhhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCC-CCHHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000 42 MELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQDPNGGYGGGPGQM 118 (362)
Q Consensus 42 ~~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~-~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~ 118 (362)
...+++++++||+++....+++|... +.++++.+|+++.+|.++|.+ .+..+++++++||.+||+++|||++.|+.+
T Consensus 45 ~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~ 124 (286)
T cd02890 45 DDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGE 124 (286)
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCC
Confidence 45889999999999872457888753 568899999999999999974 455678899999999999999999999999
Q ss_pred CchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHH
Q 018000 119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 198 (362)
Q Consensus 119 shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~ 198 (362)
+|+..||+||++|.+++.. ..++++++++||.++|++||||..++++++|++.||||++++.+++..+..+++++++
T Consensus 125 ~d~~~ty~al~~l~ll~~~---~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~ 201 (286)
T cd02890 125 VDTRFVYCALSILSLLNIL---TDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLR 201 (286)
T ss_pred chHHHHHHHHHHHHHhCCc---hhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHH
Confidence 9999999999999999964 3578899999999999999999999999999999999999999999888889999999
Q ss_pred HHHhccCCCC-CcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHH-hCCCCCCcccCCCCCCCcccccchHHH
Q 018000 199 YILSCQTYEG-GIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVV-FRQGVEGGFQGRTNKLVDGCYSFWQGG 276 (362)
Q Consensus 199 yI~scQ~~dG-GFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~-~rQ~~eGGF~GR~nKlvD~CYsfW~~a 276 (362)
||++||+.+| ||++.|+.++|+.||||++++|.+++.....+.+++.+||. ..|..+|||++||+|.+|.|||||.++
T Consensus 202 ~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~ 281 (286)
T cd02890 202 WLVERQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLS 281 (286)
T ss_pred HHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHH
Confidence 9999999987 99999999999999999999999999887789999999999 456699999999999999999999999
Q ss_pred HHHHH
Q 018000 277 VFALL 281 (362)
Q Consensus 277 ~l~ll 281 (362)
+|.++
T Consensus 282 ~lsl~ 286 (286)
T cd02890 282 GLSLL 286 (286)
T ss_pred HHHcC
Confidence 99874
No 14
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=100.00 E-value=5.7e-40 Score=320.24 Aligned_cols=236 Identities=20% Similarity=0.308 Sum_probs=216.7
Q ss_pred hhhHHHHHHHHHHhccCCCCCceecc--CChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000 43 ELQRKNHVEYLLRGLQQLGPSFCSLD--ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh 120 (362)
.+++++.++||.+|.. ..|+|.... ..+...+|.++.+|.+++. ++..+++++++||.++|++||||++.++.++|
T Consensus 55 ~~~~~~~i~~l~~cq~-~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~-~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D 132 (316)
T PLN03201 55 DVDRDEVVSWVMRCQH-ESGGFGGNTGHDPHILYTLSAVQILALFDR-LDLLDADKVASYVAGLQNEDGSFSGDEWGEID 132 (316)
T ss_pred cccHHHHHHHHHHhcC-CCCCcCCCCCCcccHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHhcCCCCCccCCCCCCcc
Confidence 3688999999999865 567886532 2478899999999999976 66678899999999999999999998999999
Q ss_pred hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI 200 (362)
Q Consensus 121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI 200 (362)
+..||+|+++|.+++. ++.+|++++++||.++|++||||..++++|+|...|||+++++.+++.++..+.+.+++||
T Consensus 133 ~r~ty~a~a~l~LL~~---~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL 209 (316)
T PLN03201 133 TRFSYCALCCLSLLKR---LDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWL 209 (316)
T ss_pred HHHHHHHHHHHHHhCc---cchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHH
Confidence 9999999999999984 4668899999999999999999999999999999999999999999977666778999999
Q ss_pred HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHH
Q 018000 201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFA 279 (362)
Q Consensus 201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~ 279 (362)
.+||+++|||++.|+.++|+.||||++|+|+++++.+.+|.+++.+||.++|. ..|||+++|+|.||.|||||.++.|+
T Consensus 210 ~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~ls 289 (316)
T PLN03201 210 CERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLS 289 (316)
T ss_pred HHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999998 68999999999999999999999999
Q ss_pred HHhh
Q 018000 280 LLRR 283 (362)
Q Consensus 280 ll~~ 283 (362)
|++.
T Consensus 290 l~~~ 293 (316)
T PLN03201 290 LLGY 293 (316)
T ss_pred hcCC
Confidence 9864
No 15
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=100.00 E-value=8.1e-36 Score=289.05 Aligned_cols=234 Identities=18% Similarity=0.235 Sum_probs=211.9
Q ss_pred hhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000 43 ELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGGGPGQM 118 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~ 118 (362)
.+.|++.++||.++.. ..++|... +.++++.+|.++.+|.+|+.+ ++..+++++++||.+||++||||+..++.+
T Consensus 46 ~~~~~~~i~~i~~~q~-~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e 124 (299)
T cd02893 46 QSYADDVISFLRRCQN-PSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGE 124 (299)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCC
Confidence 4678999999999875 47788764 357899999999999999964 456678899999999999999999999999
Q ss_pred CchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHH
Q 018000 119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 198 (362)
Q Consensus 119 shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~ 198 (362)
+|+..||+||+++.+|+. +..++.+++++||.++|++||||...+++|+|...|||+++++.+++..+..+++++++
T Consensus 125 ~D~r~tycava~~~lL~~---~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~ 201 (299)
T cd02893 125 VDVRGTYCAISVASLLNI---LTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLR 201 (299)
T ss_pred chHhHHHHHHHHHHHhCC---CchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHH
Confidence 999999999999999985 35567899999999999999999999999999999999999999999877778999999
Q ss_pred HHHhccCC-CCCcCCCCCCCCchhHhHHHHHHHHHhccC-------------CcccHHHHHHHHHhCCC-CCCcccCCCC
Q 018000 199 YILSCQTY-EGGIAGEPGSEAHGGYTFCGLAAMILINEA-------------DRLDLDALIGWVVFRQG-VEGGFQGRTN 263 (362)
Q Consensus 199 yI~scQ~~-dGGFg~~pg~esh~~~TfcALaaL~llg~~-------------~~~d~~~l~~WL~~rQ~-~eGGF~GR~n 263 (362)
||++||+. +|||.+.|+.++|..||||++++|++++.. ..+|.+++.+||..+|. .+|||+.+|+
T Consensus 202 wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~ 281 (299)
T cd02893 202 WLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPG 281 (299)
T ss_pred HHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCC
Confidence 99999998 999999999999999999999999999874 35789999999997665 7899999999
Q ss_pred CCCcccccchHHHHHHH
Q 018000 264 KLVDGCYSFWQGGVFAL 280 (362)
Q Consensus 264 KlvD~CYsfW~~a~l~l 280 (362)
|.+|...++..++.|++
T Consensus 282 ~~~D~yHT~~~l~~Lsl 298 (299)
T cd02893 282 KPRDFYHTCYALSGLSI 298 (299)
T ss_pred CCCCchhHHHHHHHHhc
Confidence 99999999999988876
No 16
>PLN02710 farnesyltranstransferase subunit beta
Probab=100.00 E-value=1.8e-35 Score=297.13 Aligned_cols=240 Identities=16% Similarity=0.225 Sum_probs=216.5
Q ss_pred hhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000 43 ELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGGGPGQM 118 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~ 118 (362)
..+|++.++||.+|.. ..|+|... +.+++..+||++.+|.+||.+ ++..+++++++||++||++||||++.++.+
T Consensus 91 ~~~~~~ii~~l~~cQ~-~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE 169 (439)
T PLN02710 91 DELENDTIDFLSRCQD-PNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGE 169 (439)
T ss_pred HHHHHHHHHHHHHhcC-CCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCC
Confidence 3577999999999865 46788752 356889999999999999964 555679999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHH
Q 018000 119 PHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGN 198 (362)
Q Consensus 119 shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~ 198 (362)
+|+..||+|++++.+++. ++.++.+++++||.++|..||||.+.+++|+|..++||+++++.||+.++..+.+++++
T Consensus 170 ~D~R~tYcAlail~LL~~---l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~ 246 (439)
T PLN02710 170 MDVRACYTAISVASLLNI---LDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLIN 246 (439)
T ss_pred CCcCCcHHHHHHHHHhCc---CchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHH
Confidence 999999999999999985 56678899999999999999999999999999999999999999999887778999999
Q ss_pred HHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC-----------------------------------------
Q 018000 199 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD----------------------------------------- 237 (362)
Q Consensus 199 yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~----------------------------------------- 237 (362)
||.+||+.+|||+++|+..+|+.|+||++|+|+|+++.+
T Consensus 247 WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (439)
T PLN02710 247 WVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSAD 326 (439)
T ss_pred HHHHhcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999998642
Q ss_pred ------------------cccHHHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHHHHhhhhh
Q 018000 238 ------------------RLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHS 286 (362)
Q Consensus 238 ------------------~~d~~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~ 286 (362)
.+|.+++.+||...|. +.|||+-+|+|.+|.-.++..++.|++++....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGLSl~q~~~~ 394 (439)
T PLN02710 327 YSKVGFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGLSVAQYSAS 394 (439)
T ss_pred ccccccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHHhhccc
Confidence 1467799999998765 789999999999999999999999999997654
No 17
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-29 Score=237.73 Aligned_cols=190 Identities=28% Similarity=0.442 Sum_probs=166.2
Q ss_pred hhhHHHHHHHHHHhccCCCCCcee-cc-CChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000 43 ELQRKNHVEYLLRGLQQLGPSFCS-LD-ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~~l~~~~~~-lD-~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh 120 (362)
.++|+...+|+.. +++..|+|.+ ++ .++..++|.+++.+.|||. ++.++.+.+|+||++|||.+||||..|+-++|
T Consensus 125 ~idr~~l~~fi~~-lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~-~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaH 202 (342)
T COG5029 125 RIDRDSLASFISG-LKNPDGSFRSDLEGEVDTRFLYIALSILSLLGD-LDKELFEGAVDYLKKCQNYEGGFGLCPYAEAH 202 (342)
T ss_pred hhhHHHHHHHHHh-ccCCCCceecccCCcchHHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHhhccCCcccCCCchhhc
Confidence 5788899999977 5556799975 22 2355679999999999995 88889999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHcCCCCCCChhh-HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000 121 LATTYAAVNALISLGGEKSLPSIN-RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY 199 (362)
Q Consensus 121 l~~Ty~Av~sL~ilg~~~~l~~id-r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y 199 (362)
.+.||||+++|++|+. ++.++ .+++.+||..+|.+.|||.+++++.+|+++.|++++.+.+++...-.+.+.+.+|
T Consensus 203 ag~tFcalaalalL~~---Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~y 279 (342)
T COG5029 203 AGYTFCALAALALLGK---LDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDY 279 (342)
T ss_pred cchHHHHHHHHHHHhc---ccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHH
Confidence 9999999999999995 77888 5999999999999999999999999999444445555667776666788999999
Q ss_pred HHhccCC-CCCcCCCCCCCCchhHhHHHHHHHHHhccCC
Q 018000 200 ILSCQTY-EGGIAGEPGSEAHGGYTFCGLAAMILINEAD 237 (362)
Q Consensus 200 I~scQ~~-dGGFg~~pg~esh~~~TfcALaaL~llg~~~ 237 (362)
|+.||.. -|||+..|+.+++.+||..++++|++++...
T Consensus 280 iL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl~~~k~ 318 (342)
T COG5029 280 ILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLIEYKY 318 (342)
T ss_pred HHhhcccCCCCCCCCCcccchHHHHHHHHHHHHHhccCC
Confidence 9999887 7999999999999999999999999998653
No 18
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-28 Score=232.04 Aligned_cols=193 Identities=20% Similarity=0.255 Sum_probs=168.6
Q ss_pred hhhhHHHHHHHHHHhccCCCCCceec---cCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCC
Q 018000 42 MELQRKNHVEYLLRGLQQLGPSFCSL---DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQM 118 (362)
Q Consensus 42 ~~l~r~~H~~yl~~~l~~l~~~~~~l---D~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~ 118 (362)
.+++|+..++|+..+.+ ..|+|.+. -.++++++|++++...+|+. .+..+.++++.||++||+.|||||..|+.+
T Consensus 123 srlDrksil~~v~~~Q~-~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~-~s~iD~ek~~~yI~~~q~YdgGfg~~pg~E 200 (347)
T KOG0367|consen 123 SRLDRKSILRFVSACQR-PDGSFVSINVGSESDMRFVYCAVAICYMLDF-WSGIDKEKLIGYIRSSQRYDGGFGQHPGGE 200 (347)
T ss_pred hhhhHHHHHHHHHHhcC-CCCceeecCCCCchhhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHhhccccccccCCCCC
Confidence 46999999999988655 46999853 23579999999999999995 556788999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHcCCC--C-CCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHH
Q 018000 119 PHLATTYAAVNALISLGGE--K-SLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQN 195 (362)
Q Consensus 119 shl~~Ty~Av~sL~ilg~~--~-~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~ 195 (362)
||..+||||+++|+++|.- + ....-+.+++++|+..+|..+|||.+++++.+|++++|+..+++.||+.....+.+.
T Consensus 201 sHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~ 280 (347)
T KOG0367|consen 201 SHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQV 280 (347)
T ss_pred CCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHH
Confidence 9999999999999998862 2 233344689999999999999999999999999966666666777888877788899
Q ss_pred HHHHHHhccCC-CCCcCCCCCCCCchhHhHHHHHHHHHhccC
Q 018000 196 VGNYILSCQTY-EGGIAGEPGSEAHGGYTFCGLAAMILINEA 236 (362)
Q Consensus 196 ~~~yI~scQ~~-dGGFg~~pg~esh~~~TfcALaaL~llg~~ 236 (362)
+.+||++||.. -|||++.|+..|+..|||.+++||++++.+
T Consensus 281 lr~fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 281 LRKFLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEK 322 (347)
T ss_pred HHHHHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCC
Confidence 99999999986 599999999999999999999999999875
No 19
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.6e-28 Score=225.24 Aligned_cols=236 Identities=19% Similarity=0.281 Sum_probs=216.8
Q ss_pred hhhHHHHHHHHHHhccCCCCCceeccCC--hhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000 43 ELQRKNHVEYLLRGLQQLGPSFCSLDAN--RPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~~l~~~~~~lD~s--r~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh 120 (362)
.+.|++.+.|+++|.. -.|+|..-..- .+..+..++..|.+.+. ++..++++++.||...|++||.|.|..-.+-.
T Consensus 65 ~~~~eeiv~~v~~C~~-~~GGfa~~~Ghd~hll~TlsAvQiL~~yds-i~~~d~d~v~~yi~gLq~edGsF~gD~wGEvD 142 (329)
T KOG0366|consen 65 RMSREEIVSFVLSCQH-EDGGFAGCPGHDPHLLYTLSAVQILALYDS-INVLDRDKVASYIKGLQQEDGSFSGDIWGEVD 142 (329)
T ss_pred hhhHHHHHHHHHheec-CCCCcCCCCCCChHHHHHHHHHHHHHHHcc-cccccHHHHHHHHHhhcCcCCcccCCcccccc
Confidence 4789999999999987 57888754332 45556678888888886 67778999999999999999999998777888
Q ss_pred hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI 200 (362)
Q Consensus 121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI 200 (362)
.-.+|+||++|.+||. ++.++.+++++|++++.+-||||...|+.|+..-.+||.+.++++++.++..+.+.+..||
T Consensus 143 TRfs~~av~~L~lLg~---ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwl 219 (329)
T KOG0366|consen 143 TRFSYCAVACLALLGK---LDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWL 219 (329)
T ss_pred hhhhHHHHHHHHHHhh---HHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHH
Confidence 9999999999999995 7899999999999999999999999999999999999999999999999888999999999
Q ss_pred HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHH
Q 018000 201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFA 279 (362)
Q Consensus 201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~ 279 (362)
...|-+.||..++|..-|+.-|+++.+++|+++|+.+.+|.+++.+||...|. +.|||+.||...+|.-.++...|.|+
T Consensus 220 ceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLS 299 (329)
T KOG0366|consen 220 CERQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLS 299 (329)
T ss_pred HhccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred HHhh
Q 018000 280 LLRR 283 (362)
Q Consensus 280 ll~~ 283 (362)
+|+-
T Consensus 300 Llg~ 303 (329)
T KOG0366|consen 300 LLGY 303 (329)
T ss_pred hhCC
Confidence 9984
No 20
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.95 E-value=3.1e-26 Score=213.96 Aligned_cols=236 Identities=32% Similarity=0.548 Sum_probs=203.8
Q ss_pred HHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCC-----CCHHhHHHHHHHHhhccCCCCCCCCCCCC-CCc
Q 018000 47 KNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEF-----VDADLEDRTIEFLSRCQDPNGGYGGGPGQ-MPH 120 (362)
Q Consensus 47 ~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~-----~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~-~sh 120 (362)
++|++||.+.....++.+......++|.+++++.++..++.. .....++++++||.++|++||||+..++. .++
T Consensus 2 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~ 81 (300)
T cd00688 2 EKHLKYLLRYPYGDGHWYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDYPS 81 (300)
T ss_pred hhHHHHHHHccccCCCccccCCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCCcc
Confidence 579999998776666666666788999999999999998752 34567899999999999999999998777 899
Q ss_pred hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCC-------CcccchHHHHHHHHHHhccCC-HHH
Q 018000 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-------EIDVRACYTAISVASILNILD-DEL 192 (362)
Q Consensus 121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~g-------e~D~r~~Y~al~~~~LL~~~~-~~~ 192 (362)
+..|++++.+|..++.........++++++||.+.|++||+|...... ..|++.+++++.++.+++... ...
T Consensus 82 ~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~~~ 161 (300)
T cd00688 82 LWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPL 161 (300)
T ss_pred hHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCcHH
Confidence 999999999999998643344556789999999999999999976443 678888999999998887654 567
Q ss_pred HHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCC---CCCCccc
Q 018000 193 LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT---NKLVDGC 269 (362)
Q Consensus 193 ~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~---nKlvD~C 269 (362)
++++++||.++|+.+||| .++.++|...|+|++.+|.+++......++++++||.++|..+|||.... ++.+|.|
T Consensus 162 ~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~ 239 (300)
T cd00688 162 IEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSC 239 (300)
T ss_pred HHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchH
Confidence 899999999999999999 67888999999999999999997645568999999999999999999875 8899999
Q ss_pred ccchHHHHHHHHhhh
Q 018000 270 YSFWQGGVFALLRRF 284 (362)
Q Consensus 270 YsfW~~a~l~ll~~~ 284 (362)
+++|++.+|..++..
T Consensus 240 ~~~~~~~aL~~~~~~ 254 (300)
T cd00688 240 YTEWAAYALLALGKL 254 (300)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887754
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.93 E-value=2.4e-24 Score=201.18 Aligned_cols=234 Identities=22% Similarity=0.296 Sum_probs=199.2
Q ss_pred hhhhHHHHHHHHHHhccCCCCCceecc---CChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCCCCCCCCC
Q 018000 42 MELQRKNHVEYLLRGLQQLGPSFCSLD---ANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGGGPG 116 (362)
Q Consensus 42 ~~l~r~~H~~yl~~~l~~l~~~~~~lD---~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dGGFgg~pg 116 (362)
..-..+++++||.+. +..+|+|..-. .+.+|.+++++.+|..++.. ++...++++++||.++|++||||.....
T Consensus 50 ~~~~~~~~~~~l~~~-q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~ 128 (300)
T cd00688 50 ADENIEKGIQRLLSY-QLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGP 128 (300)
T ss_pred chHHHHHHHHHHHhc-cCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecC
Confidence 346788999999884 45678886533 56899999999999999874 5667889999999999999999987654
Q ss_pred C-------CCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCC
Q 018000 117 Q-------MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD 189 (362)
Q Consensus 117 ~-------~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~ 189 (362)
. .++...|++++.+|..++... ...+++++++||.+.|+++|+| .++++.|+..+++++.++.+++...
T Consensus 129 ~~~~~~~~~~~~~~t~~al~aL~~~~~~~--~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~ 204 (300)
T cd00688 129 GNHRIGGDESDVRLTAYALIALALLGKLD--PDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLD 204 (300)
T ss_pred CCCcccCCCCcccHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcc
Confidence 3 689999999999999998532 1446789999999999999999 5667888888888888888777654
Q ss_pred HHHHHHHHHHHHhccCCCCCcCCCC---CCCCchhHhHHHHHHHHHhccC-CcccHHHHHHHHHhCCCCCCcccCCCCCC
Q 018000 190 DELLQNVGNYILSCQTYEGGIAGEP---GSEAHGGYTFCGLAAMILINEA-DRLDLDALIGWVVFRQGVEGGFQGRTNKL 265 (362)
Q Consensus 190 ~~~~~~~~~yI~scQ~~dGGFg~~p---g~esh~~~TfcALaaL~llg~~-~~~d~~~l~~WL~~rQ~~eGGF~GR~nKl 265 (362)
...++++++||+++|+.+|||+..+ ..+++..+|++++.+|..++.. .....+++++||.++|..+|||.+++++.
T Consensus 205 ~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~ 284 (300)
T cd00688 205 SPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKS 284 (300)
T ss_pred hHHHHHHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCC
Confidence 5778999999999999999999875 6789999999999999999864 45568999999999999999999999999
Q ss_pred CcccccchHHHHHHH
Q 018000 266 VDGCYSFWQGGVFAL 280 (362)
Q Consensus 266 vD~CYsfW~~a~l~l 280 (362)
+|+++++|++.+|..
T Consensus 285 ~~~~~t~~al~aL~~ 299 (300)
T cd00688 285 YDTQHTVFALLALSL 299 (300)
T ss_pred CcchhhHHHHHHHhc
Confidence 999999999988754
No 22
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-23 Score=200.09 Aligned_cols=187 Identities=25% Similarity=0.357 Sum_probs=162.1
Q ss_pred hhhhHHHHHHHHHHhccCCCCCceecc--CChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCC
Q 018000 42 MELQRKNHVEYLLRGLQQLGPSFCSLD--ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMP 119 (362)
Q Consensus 42 ~~l~r~~H~~yl~~~l~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~s 119 (362)
..++|++..+||.+ ++..+|+|...+ -.+.+-+|++++...|||.+ .++.-+.+.+||.+||+.+|||||.|+.++
T Consensus 169 ~~InR~~l~~fL~s-lK~~dGgFrmh~~GE~DvRs~YcA~svasllni~-~deL~eG~~~wi~~CQtyEGG~GG~P~~EA 246 (423)
T KOG0365|consen 169 SSINREKLYQFLFS-LKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIP-MDELFEGTLDWIASCQTYEGGFGGEPGVEA 246 (423)
T ss_pred HHhhHHHHHHHHHH-hcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhcccccCCcCCCccccc
Confidence 35999999999987 788899998643 35778999999999999995 457888999999999999999999999999
Q ss_pred chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCC-CCCceeeccCCCcccchHHHHHHHHH--Hhcc-C---C---
Q 018000 120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD-PSGAFRMHDAGEIDVRACYTAISVAS--ILNI-L---D--- 189 (362)
Q Consensus 120 hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~-~dGgF~~~~~ge~D~r~~Y~al~~~~--LL~~-~---~--- 189 (362)
|..+||||+++|++|+. ++.+|++++.+|..++|. -.|||.++.++.+|- ||+.|+.+. ||.. . .
T Consensus 247 HGGYTFCalAalalLn~---~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDG--CYSFWvga~~~il~~~~~~~~~s~ 321 (423)
T KOG0365|consen 247 HGGYTFCALAALALLNE---MDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDG--CYSFWVGASAPILQAFYSSAGHSL 321 (423)
T ss_pred cCCeeHHHHHHHHHHhh---hhhhCHHHHHHHHHHhhhhhhccccccccchhhh--hHHHHhcchHHHHHHHhcccccch
Confidence 99999999999999986 688999999999999997 589999999999997 888887654 3321 1 1
Q ss_pred ---HHHHHHHHHHHHh-ccCCCCCcCCCCCCCCchhHhHHHHHHHHHhcc
Q 018000 190 ---DELLQNVGNYILS-CQTYEGGIAGEPGSEAHGGYTFCGLAAMILINE 235 (362)
Q Consensus 190 ---~~~~~~~~~yI~s-cQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~ 235 (362)
-.+.+++.+||+- ||...|||...|+...+.+||.+.|.+|++...
T Consensus 322 ~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCYcLsGLSiAq~ 371 (423)
T KOG0365|consen 322 EHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCYCLSGLSIAQH 371 (423)
T ss_pred hhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhhHhcchhHHhh
Confidence 1356789999987 699999999999999999999999999997653
No 23
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.83 E-value=2.8e-19 Score=189.19 Aligned_cols=182 Identities=19% Similarity=0.233 Sum_probs=144.0
Q ss_pred CCHHhHHHHHHHHhhccCCCCCCCCCC---------------------CCCCchhhhHHHHHHHHHcCCCCC---CChhh
Q 018000 89 VDADLEDRTIEFLSRCQDPNGGYGGGP---------------------GQMPHLATTYAAVNALISLGGEKS---LPSIN 144 (362)
Q Consensus 89 ~~~~~~~~~i~~l~~~Q~~dGGFgg~p---------------------g~~shl~~Ty~Av~sL~ilg~~~~---l~~id 144 (362)
++.+..+++++||+++||+||||+... ...+++..|..+|.+|..++.... -..|+
T Consensus 397 ~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~ 476 (634)
T TIGR03463 397 VPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRIT 476 (634)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHH
Confidence 445678899999999999999999421 136799999999999999874321 11222
Q ss_pred --HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhcc-CCHHHHHHHHHHHHhccCCCCCcCC---------
Q 018000 145 --RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYEGGIAG--------- 212 (362)
Q Consensus 145 --r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~-~~~~~~~~~~~yI~scQ~~dGGFg~--------- 212 (362)
.+++++||++.|++||||.+.. |...+..|++++.++...+. .....++++++||++||+.||||+.
T Consensus 477 ~ai~rav~~L~~~Q~~dGsW~g~W-g~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~ 555 (634)
T TIGR03463 477 RAISRGVRFLRSRQREDGSFPGSW-GVCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQAR 555 (634)
T ss_pred HHHHHHHHHHHHhcCCCCCccccC-CCCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCcccccc
Confidence 3689999999999999998765 44556667777777766665 3457789999999999999999985
Q ss_pred -CCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCC--CCCCccccc
Q 018000 213 -EPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT--NKLVDGCYS 271 (362)
Q Consensus 213 -~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~--nKlvD~CYs 271 (362)
.++.+++...|++||.+|...|..+...++++++||.++|.++|||.... .-.+..||-
T Consensus 556 y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l 617 (634)
T TIGR03463 556 YVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAML 617 (634)
T ss_pred ccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeE
Confidence 24567999999999999999998776779999999999999999997753 445666664
No 24
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.81 E-value=5.8e-20 Score=151.51 Aligned_cols=109 Identities=31% Similarity=0.546 Sum_probs=91.3
Q ss_pred HHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHH--HHHHHhcCCCCCceeecc-CCCcccch
Q 018000 98 IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKV--YTFLKCMKDPSGAFRMHD-AGEIDVRA 174 (362)
Q Consensus 98 i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~--~~fL~s~Q~~dGgF~~~~-~ge~D~r~ 174 (362)
|+||+++|++||||+.. +..+++..|+.|+.+|..++.. .+++++ ++||.++|++||+|...+ +.+.|++.
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~-----~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~ 74 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEE-----PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYT 74 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSH-----HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCc-----ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHH
Confidence 68999999999999987 8899999999999999999853 247788 999999999999999987 45689999
Q ss_pred HHHHHHHHHHhccCCH-HHHHHHHHHHHhccCCCCCcCC
Q 018000 175 CYTAISVASILNILDD-ELLQNVGNYILSCQTYEGGIAG 212 (362)
Q Consensus 175 ~Y~al~~~~LL~~~~~-~~~~~~~~yI~scQ~~dGGFg~ 212 (362)
+|+++.++.+++.... +.++++++||++||++||||+.
T Consensus 75 t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 75 TYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence 9999999988876553 6789999999999999999974
No 25
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.79 E-value=5.1e-18 Score=180.01 Aligned_cols=183 Identities=20% Similarity=0.226 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhCCC------CCHHhHHHHHHHHhhccCCCCCCCCC-C--------------------CCCCchhhhHH
Q 018000 74 ICYWILHSMALLGEF------VDADLEDRTIEFLSRCQDPNGGYGGG-P--------------------GQMPHLATTYA 126 (362)
Q Consensus 74 ~~Yw~l~sL~lLg~~------~~~~~~~~~i~~l~~~Q~~dGGFgg~-p--------------------g~~shl~~Ty~ 126 (362)
.+-.++.+|..++.. ++.+.++++++||+++|++||||+.. + ...+++..|++
T Consensus 376 ~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~ 455 (634)
T cd02892 376 DTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGS 455 (634)
T ss_pred chHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHH
Confidence 455566677666642 34567889999999999999999742 1 12578889999
Q ss_pred HHHHHHHcCCCCCCC--hh--hHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHH---HHHHHhccC--CHHHHHHHH
Q 018000 127 AVNALISLGGEKSLP--SI--NRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAI---SVASILNIL--DDELLQNVG 197 (362)
Q Consensus 127 Av~sL~ilg~~~~l~--~i--dr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al---~~~~LL~~~--~~~~~~~~~ 197 (362)
++.+|..++...... .+ -.+++++||.+.|++||||.+.. + ++.+|..+ .++...+.. ....+++++
T Consensus 456 ~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g---~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~ 531 (634)
T cd02892 456 VLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-G---VCYIYGTWFALEALAAAGEDYENSPYIRKAC 531 (634)
T ss_pred HHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-C---CccHHHHHHHHHHHHHhCCcccCcHHHHHHH
Confidence 999999998532110 12 24689999999999999997654 2 34455543 334334432 346789999
Q ss_pred HHHHhccCCCCCcCCC----------CCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000 198 NYILSCQTYEGGIAGE----------PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 260 (362)
Q Consensus 198 ~yI~scQ~~dGGFg~~----------pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G 260 (362)
+||++||+.||||+.. ++.+++...|.+||.+|...+..+...++++++||.++|..+|||.-
T Consensus 532 ~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~ 604 (634)
T cd02892 532 DFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQ 604 (634)
T ss_pred HHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCC
Confidence 9999999999999853 24568999999999999998877666789999999999999999966
No 26
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.77 E-value=2.5e-17 Score=174.36 Aligned_cols=210 Identities=19% Similarity=0.183 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhccCCCC------------Cce--ecc--CChhHHHHHHHHHHHHhCCC---CCHHhHHHHHHHHhhccC
Q 018000 46 RKNHVEYLLRGLQQLGP------------SFC--SLD--ANRPWICYWILHSMALLGEF---VDADLEDRTIEFLSRCQD 106 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~------------~~~--~lD--~sr~w~~Yw~l~sL~lLg~~---~~~~~~~~~i~~l~~~Q~ 106 (362)
..|-.+||.+.+...|+ ++. ..+ .+..+-+-.+|.+|..++.+ ......+++++||+++||
T Consensus 338 l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn 417 (635)
T TIGR01507 338 LVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQS 417 (635)
T ss_pred HHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcC
Confidence 34567788887533333 222 111 13556666788888777532 224578899999999999
Q ss_pred CCCCCCCCCC-------------------CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccC
Q 018000 107 PNGGYGGGPG-------------------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA 167 (362)
Q Consensus 107 ~dGGFgg~pg-------------------~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ 167 (362)
+||||+.... .+|....|-.++.+|...+.... ..-.++.++||.+.|++||||.+..+
T Consensus 418 ~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~--~~~i~rav~~L~~~Q~~dG~W~g~wg 495 (635)
T TIGR01507 418 SNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDA--WPVIERAVEYLKREQEPDGSWFGRWG 495 (635)
T ss_pred CCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHccCCCCCCccCCC
Confidence 9999975211 24677889999999999875322 22246899999999999999976643
Q ss_pred CCcccchHHHHHHHHHHhc---c-CCHHHHHHHHHHHHhccCCCCCcCCC----------CCCCCchhHhHHHHHHHHHh
Q 018000 168 GEIDVRACYTAISVASILN---I-LDDELLQNVGNYILSCQTYEGGIAGE----------PGSEAHGGYTFCGLAAMILI 233 (362)
Q Consensus 168 ge~D~r~~Y~al~~~~LL~---~-~~~~~~~~~~~yI~scQ~~dGGFg~~----------pg~esh~~~TfcALaaL~ll 233 (362)
++.+|+.+.++..|. . ...+.++++++||++||+.||||+.. +.++++...|.+||.+|...
T Consensus 496 ----~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~a 571 (635)
T TIGR01507 496 ----VNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAA 571 (635)
T ss_pred ----CccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHh
Confidence 455676655444332 2 23467899999999999999999854 23478999999999999999
Q ss_pred ccCCcccHHHHHHHHHhCCCCCCcccCC
Q 018000 234 NEADRLDLDALIGWVVFRQGVEGGFQGR 261 (362)
Q Consensus 234 g~~~~~d~~~l~~WL~~rQ~~eGGF~GR 261 (362)
+..+...++++++||.++|.++|||.-.
T Consensus 572 g~~~~~~I~rav~~L~~~Q~~dG~W~e~ 599 (635)
T TIGR01507 572 GRAESEAARRGVQYLVETQRPDGGWDEP 599 (635)
T ss_pred CCCCcHHHHHHHHHHHHhcCCCCCCCCc
Confidence 8776667899999999999999999654
No 27
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.77 E-value=4.2e-17 Score=159.76 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=128.1
Q ss_pred CCHHhHHHHHHHHhhccCCCCCCCCC-C------------------CCCCchhhhHHHHHHHHHcCCCCCCC--h--hhH
Q 018000 89 VDADLEDRTIEFLSRCQDPNGGYGGG-P------------------GQMPHLATTYAAVNALISLGGEKSLP--S--INR 145 (362)
Q Consensus 89 ~~~~~~~~~i~~l~~~Q~~dGGFgg~-p------------------g~~shl~~Ty~Av~sL~ilg~~~~l~--~--idr 145 (362)
+.++.++++++||.++|++||||... + ...+++..|.+++.+|..++...... . .-.
T Consensus 114 ~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i 193 (348)
T cd02889 114 VSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAI 193 (348)
T ss_pred hhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHH
Confidence 45677889999999999999999843 2 12467889999999999988532110 0 124
Q ss_pred HHHHHHHHhcCCCCCceeeccCCCcccchHHHH---HHHHHHhcc-CCHHHHHHHHHHHHhccCCCCCcCCC--------
Q 018000 146 SKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTA---ISVASILNI-LDDELLQNVGNYILSCQTYEGGIAGE-------- 213 (362)
Q Consensus 146 ~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~a---l~~~~LL~~-~~~~~~~~~~~yI~scQ~~dGGFg~~-------- 213 (362)
+++++||.+.|++||+|....+ .. .+|+. +.++...+. ...+.++++++||++||+.||||+..
T Consensus 194 ~~a~~~L~~~q~~dG~w~~~~~-~~---~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~ 269 (348)
T cd02889 194 RRAVKYLEREQEPDGSWYGRWG-VC---FIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPS 269 (348)
T ss_pred HHHHHHHHHhCCCCCCccccCC-Cc---chHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCccccccccc
Confidence 6899999999999999975432 22 34443 333333343 23467889999999999999999863
Q ss_pred --CCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000 214 --PGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 260 (362)
Q Consensus 214 --pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G 260 (362)
++..++...|.++|.+|...+..+...++++++||.++|.++|||..
T Consensus 270 ~~~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~ 318 (348)
T cd02889 270 YAGGGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQ 318 (348)
T ss_pred ccCCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCC
Confidence 34568899999999999998876666789999999999999999986
No 28
>PLN03012 Camelliol C synthase
Probab=99.76 E-value=5.7e-18 Score=180.13 Aligned_cols=181 Identities=19% Similarity=0.206 Sum_probs=139.1
Q ss_pred CCCCHHhHHHHHHHHhhccCCCCCCCCCCC---------------------CCCchhhhHHHHHHHHHcCCCCC---CCh
Q 018000 87 EFVDADLEDRTIEFLSRCQDPNGGYGGGPG---------------------QMPHLATTYAAVNALISLGGEKS---LPS 142 (362)
Q Consensus 87 ~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg---------------------~~shl~~Ty~Av~sL~ilg~~~~---l~~ 142 (362)
.+++++...++|+||+++||+||||+.... .++..-.|-.+|.+|.+++.... -+.
T Consensus 508 ~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~ 587 (759)
T PLN03012 508 PKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEE 587 (759)
T ss_pred ccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhh
Confidence 445567788999999999999999865321 36777789999999999875211 112
Q ss_pred hh--HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHh---cc--CCHHHHHHHHHHHHhccCCCCCcCCCC-
Q 018000 143 IN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---NI--LDDELLQNVGNYILSCQTYEGGIAGEP- 214 (362)
Q Consensus 143 id--r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL---~~--~~~~~~~~~~~yI~scQ~~dGGFg~~p- 214 (362)
++ .+++++||++.|++||||.++.+ ++++|+.+.++.-| +. .+...++++++||++.|+.|||||..-
T Consensus 588 i~~~i~rAv~~L~~~Q~~DGsW~G~Wg----v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~ 663 (759)
T PLN03012 588 INAFIKKAAEYIENIQMLDGSWYGNWG----ICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYL 663 (759)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCccccc----ccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCC
Confidence 32 46899999999999999998774 57778776655433 22 223679999999999999999999752
Q ss_pred -----------CCCCchhHhHHHHHHHHHhccCCc--ccHHHHHHHHHhCCCCCCcccCC--CCCCCccccc
Q 018000 215 -----------GSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQGR--TNKLVDGCYS 271 (362)
Q Consensus 215 -----------g~esh~~~TfcALaaL~llg~~~~--~d~~~l~~WL~~rQ~~eGGF~GR--~nKlvD~CYs 271 (362)
+..||...|.+||.+|...|..+. ..++|+++||.++|.++|+|.-. +.-....||-
T Consensus 664 Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i 735 (759)
T PLN03012 664 SCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLL 735 (759)
T ss_pred CCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEE
Confidence 345999999999999999997643 35899999999999999998553 3335566664
No 29
>PLN02993 lupeol synthase
Probab=99.74 E-value=8.3e-17 Score=171.61 Aligned_cols=182 Identities=18% Similarity=0.221 Sum_probs=137.7
Q ss_pred CCCHHhHHHHHHHHhhccCCCCCCCCCCC---------------------CCCchhhhHHHHHHHHHcCCCC-CC--Chh
Q 018000 88 FVDADLEDRTIEFLSRCQDPNGGYGGGPG---------------------QMPHLATTYAAVNALISLGGEK-SL--PSI 143 (362)
Q Consensus 88 ~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg---------------------~~shl~~Ty~Av~sL~ilg~~~-~l--~~i 143 (362)
+++++...++++||+++||+||||+.... .++..-.|-++|.+|.+++... .. +.|
T Consensus 509 ~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei 588 (763)
T PLN02993 509 KIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEI 588 (763)
T ss_pred cchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhH
Confidence 34556788999999999999999976421 2688899999999999987421 11 222
Q ss_pred h--HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccC--CHHHHHHHHHHHHhccCCCCCcCCCC-----
Q 018000 144 N--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL--DDELLQNVGNYILSCQTYEGGIAGEP----- 214 (362)
Q Consensus 144 d--r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~--~~~~~~~~~~yI~scQ~~dGGFg~~p----- 214 (362)
+ .+++++||.+.|++||||.++. |...+.+|++++.++...+.. ....++++++||+++|+.|||||..-
T Consensus 589 ~~~i~rAv~yL~~~Q~~DGSW~G~W-gv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~ 667 (763)
T PLN02993 589 IKSIEKAVQFIESKQTPDGSWYGNW-GICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPE 667 (763)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccc-ccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCC
Confidence 2 4789999999999999999865 433444444445444444443 22678999999999999999999742
Q ss_pred -------CCCCchhHhHHHHHHHHHhccCCc--ccHHHHHHHHHhCCCCCCcccCC--CCCCCcccc
Q 018000 215 -------GSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQGR--TNKLVDGCY 270 (362)
Q Consensus 215 -------g~esh~~~TfcALaaL~llg~~~~--~d~~~l~~WL~~rQ~~eGGF~GR--~nKlvD~CY 270 (362)
+..|++..|.+|+.+|...|..+. .-++++++||.++|..+|+|.-. +.-.+-.||
T Consensus 668 ~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~ 734 (763)
T PLN02993 668 QRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCM 734 (763)
T ss_pred cccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccce
Confidence 346899999999999999987544 24899999999999999998553 444666777
No 30
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.74 E-value=4e-16 Score=152.87 Aligned_cols=231 Identities=15% Similarity=0.183 Sum_probs=163.7
Q ss_pred HHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCC-CCCHHhHHHHHHHHhhcc--------------CCCCCCC
Q 018000 48 NHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGE-FVDADLEDRTIEFLSRCQ--------------DPNGGYG 112 (362)
Q Consensus 48 ~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~-~~~~~~~~~~i~~l~~~Q--------------~~dGGFg 112 (362)
+-++||.+.++ .+|+|.... +..|.+.+++.+|...|. +-..+.++++++||.+.| .++|||+
T Consensus 3 ~~~~~L~~~Q~-~dG~W~~~~-~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~ 80 (348)
T cd02889 3 RALDFLLSLQA-PDGHWPGEY-SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWA 80 (348)
T ss_pred hHHHHHHHhcc-CCCCccccC-CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCc
Confidence 45789988554 577786544 778999999999998886 234567889999999999 6899988
Q ss_pred CCCC--CCCchhhhHHHHHHHHHcCCCC----CCChhhHHHHHHHHHhcCCCCCceeeccCC------------------
Q 018000 113 GGPG--QMPHLATTYAAVNALISLGGEK----SLPSINRSKVYTFLKCMKDPSGAFRMHDAG------------------ 168 (362)
Q Consensus 113 g~pg--~~shl~~Ty~Av~sL~ilg~~~----~l~~idr~~~~~fL~s~Q~~dGgF~~~~~g------------------ 168 (362)
.... ..++...|..++.+|..++... ....-...++++||.+.|++||+|......
T Consensus 81 y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~ 160 (348)
T cd02889 81 FSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMI 160 (348)
T ss_pred ccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCcc
Confidence 6432 2456678889999998876421 111222468899999999999999843211
Q ss_pred -CcccchHHHHHHHHHHhccC-CH------HHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccC-Ccc
Q 018000 169 -EIDVRACYTAISVASILNIL-DD------ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA-DRL 239 (362)
Q Consensus 169 -e~D~r~~Y~al~~~~LL~~~-~~------~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~-~~~ 239 (362)
..++..|..++.++..++.. +. +.++++++||+++|+.+|||.+.. ...+...|++++.+|..+|.. ...
T Consensus 161 ~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~-~~~~~y~ta~a~~aL~~~g~~~~~~ 239 (348)
T cd02889 161 DPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRW-GVCFIYGTWFALEALAAAGEDENSP 239 (348)
T ss_pred CCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccC-CCcchHHHHHHHHHHHHcCCCcCcH
Confidence 12232244444444444432 22 467899999999999999996532 235667788899999988864 234
Q ss_pred cHHHHHHHHHhCCCCCCcccCCC----------CCCCcccccchHHHHHHHH
Q 018000 240 DLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALL 281 (362)
Q Consensus 240 d~~~l~~WL~~rQ~~eGGF~GR~----------nKlvD~CYsfW~~a~l~ll 281 (362)
.++++++||.++|.++|||.... ...+|.+++.|++-+|...
T Consensus 240 ~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~ 291 (348)
T cd02889 240 YVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAA 291 (348)
T ss_pred HHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhc
Confidence 57899999999999999997642 2346777777777666543
No 31
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.73 E-value=2.3e-16 Score=166.83 Aligned_cols=177 Identities=19% Similarity=0.232 Sum_probs=132.3
Q ss_pred CCHHhHHHHHHHHhhccCCCCCCCCC-------------C--------CCCCchhhhHHHHHHHHHcCCCC-CCChhhHH
Q 018000 89 VDADLEDRTIEFLSRCQDPNGGYGGG-------------P--------GQMPHLATTYAAVNALISLGGEK-SLPSINRS 146 (362)
Q Consensus 89 ~~~~~~~~~i~~l~~~Q~~dGGFgg~-------------p--------g~~shl~~Ty~Av~sL~ilg~~~-~l~~idr~ 146 (362)
++.+..+++++||+++||+||||+.. | -..+....|..+|.+|..++... .+. -..+
T Consensus 385 ~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~-~~i~ 463 (621)
T TIGR01787 385 VKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIR-NVLE 463 (621)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHH-HHHH
Confidence 45567889999999999999999842 2 12345578999999999887411 111 1247
Q ss_pred HHHHHHHhcCCCCCceeeccCCCcccchHHHHHHH---HHHhccC--CHHHHHHHHHHHHhccCCCCCcCCCC-------
Q 018000 147 KVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISV---ASILNIL--DDELLQNVGNYILSCQTYEGGIAGEP------- 214 (362)
Q Consensus 147 ~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~---~~LL~~~--~~~~~~~~~~yI~scQ~~dGGFg~~p------- 214 (362)
++++||.+.|++||+|.+..+ ++++|+.+.+ +..++.. ..+.++++++||+++|+.||||+...
T Consensus 464 rAl~~L~~~Q~~DGsw~g~wg----~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~ 539 (621)
T TIGR01787 464 RALEYLRREQRADGSWFGRWG----VNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPS 539 (621)
T ss_pred HHHHHHHHhcCCCCCCcccCC----CCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccc
Confidence 899999999999999987653 3445554443 3333432 22678999999999999999998542
Q ss_pred ---CCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCC--CC-CCcccc
Q 018000 215 ---GSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRT--NK-LVDGCY 270 (362)
Q Consensus 215 ---g~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~--nK-lvD~CY 270 (362)
..+|+...|.+||.+|...+......++++++||.++|.++|||.... .- .+-.||
T Consensus 540 y~~~~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~ 601 (621)
T TIGR01787 540 YVGSGGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFY 601 (621)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccce
Confidence 246899999999999998887665578999999999999999996542 32 235676
No 32
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.70 E-value=2.8e-17 Score=135.41 Aligned_cols=108 Identities=23% Similarity=0.354 Sum_probs=86.6
Q ss_pred HHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHH--HHHHHhccCCCCCcCCCC-CCCCchhHhHH
Q 018000 149 YTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNV--GNYILSCQTYEGGIAGEP-GSEAHGGYTFC 225 (362)
Q Consensus 149 ~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~--~~yI~scQ~~dGGFg~~p-g~esh~~~Tfc 225 (362)
++||+++|++||||... +.+.++-.|+.++.++..++.. ...+++ ++||.+||++||||+..| +.+++..+|++
T Consensus 1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~--~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~ 77 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEE--PDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV 77 (113)
T ss_dssp HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSH--HCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCc--ccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence 68999999999999987 6778886677777666655543 347778 999999999999999999 56789999999
Q ss_pred HHHHHHHhccCCc-ccHHHHHHHHHhCCCCCCccc
Q 018000 226 GLAAMILINEADR-LDLDALIGWVVFRQGVEGGFQ 259 (362)
Q Consensus 226 ALaaL~llg~~~~-~d~~~l~~WL~~rQ~~eGGF~ 259 (362)
++++|.+++.... ..++++++||.+.|+++|||+
T Consensus 78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999987653 568999999999999999996
No 33
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.64 E-value=2.2e-14 Score=152.44 Aligned_cols=214 Identities=16% Similarity=0.171 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhccCC-CCCc-eeccCChhHHHHHHHHHHHHhCCC-CCHHhHHHHHHHHhhccC--------------CC
Q 018000 46 RKNHVEYLLRGLQQL-GPSF-CSLDANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQD--------------PN 108 (362)
Q Consensus 46 r~~H~~yl~~~l~~l-~~~~-~~lD~sr~w~~Yw~l~sL~lLg~~-~~~~~~~~~i~~l~~~Q~--------------~d 108 (362)
..+|++++.+.+-.- ++.. ...+.+..|-+=+++.+|.-.|.. -.....+++++||++.|. +.
T Consensus 280 ~~~~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~ 359 (634)
T cd02892 280 FKRHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLRK 359 (634)
T ss_pred HHHHHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCCC
Confidence 457888888876322 3332 334567899999999998766753 223467899999999996 35
Q ss_pred CCCCCC--CCCCCchhhhHHHHHHHHHcCCCCC----CChhhHHHHHHHHHhcCCCCCceeecc-C--C-----------
Q 018000 109 GGYGGG--PGQMPHLATTYAAVNALISLGGEKS----LPSINRSKVYTFLKCMKDPSGAFRMHD-A--G----------- 168 (362)
Q Consensus 109 GGFgg~--pg~~shl~~Ty~Av~sL~ilg~~~~----l~~idr~~~~~fL~s~Q~~dGgF~~~~-~--g----------- 168 (362)
|||+.. +...|.+..|..++.+|..++.... ...-..+++++||.++|++||||.... . +
T Consensus 360 GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~ 439 (634)
T cd02892 360 GGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFED 439 (634)
T ss_pred CCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhh
Confidence 777654 3345778899999999998875311 111124678999999999999997421 1 0
Q ss_pred -------CcccchHHHHHHHHHHhccCCH-------HHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhc
Q 018000 169 -------EIDVRACYTAISVASILNILDD-------ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 234 (362)
Q Consensus 169 -------e~D~r~~Y~al~~~~LL~~~~~-------~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg 234 (362)
...+--|..++.++.+++...+ ..++++++||+++|+.||||.+.- ...+.+.|+.++.+|..+|
T Consensus 440 ~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~~G 518 (634)
T cd02892 440 FGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-GVCYIYGTWFALEALAAAG 518 (634)
T ss_pred hcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-CCccHHHHHHHHHHHHHhC
Confidence 0111126666666666554322 468899999999999999996543 3466778999999999988
Q ss_pred cC--CcccHHHHHHHHHhCCCCCCcccC
Q 018000 235 EA--DRLDLDALIGWVVFRQGVEGGFQG 260 (362)
Q Consensus 235 ~~--~~~d~~~l~~WL~~rQ~~eGGF~G 260 (362)
.. ....++++++||.++|..+|||..
T Consensus 519 ~~~~~~~~i~~a~~~L~s~Q~~DGgWge 546 (634)
T cd02892 519 EDYENSPYIRKACDFLLSKQNPDGGWGE 546 (634)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCCCCCC
Confidence 75 234689999999999999999974
No 34
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.62 E-value=6.5e-14 Score=148.47 Aligned_cols=237 Identities=16% Similarity=0.078 Sum_probs=160.6
Q ss_pred hHHHHHHHHHHhccCCCCCcee-ccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccC-------------CCCC
Q 018000 45 QRKNHVEYLLRGLQQLGPSFCS-LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQD-------------PNGG 110 (362)
Q Consensus 45 ~r~~H~~yl~~~l~~l~~~~~~-lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~-------------~dGG 110 (362)
.+.+|++++.+.+...+++... -..|..|-+-+++.+|...|.+.++....++.+||+++|. +.||
T Consensus 288 ~~~~~l~~l~~~~~~~~~g~~~~~~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GG 367 (635)
T TIGR01507 288 FIKLGWEGIDLYGVELDDSWMFQACVSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGG 367 (635)
T ss_pred HHHHHHHHHHHheEecCCceEecCCCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCc
Confidence 4667999998876554444322 2357899999999999888864444567899999999973 2578
Q ss_pred CCCC--CCCCCchhhhHHHHHHHHHcCCC-CCCChhhHHHHHHHHHhcCCCCCceeecc--C----------C----Ccc
Q 018000 111 YGGG--PGQMPHLATTYAAVNALISLGGE-KSLPSINRSKVYTFLKCMKDPSGAFRMHD--A----------G----EID 171 (362)
Q Consensus 111 Fgg~--pg~~shl~~Ty~Av~sL~ilg~~-~~l~~idr~~~~~fL~s~Q~~dGgF~~~~--~----------g----e~D 171 (362)
|+.. +...|.+..|..++.+|..++.. +.......++.++||.++|++||||.... + + ..|
T Consensus 368 W~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D 447 (635)
T TIGR01507 368 WAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTD 447 (635)
T ss_pred cCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccC
Confidence 7765 44479999999999999887532 11112235789999999999999996421 0 0 011
Q ss_pred cchHH-HHHHHHH--Hhcc-CCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC-cccHHHHHH
Q 018000 172 VRACY-TAISVAS--ILNI-LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RLDLDALIG 246 (362)
Q Consensus 172 ~r~~Y-~al~~~~--LL~~-~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~-~~d~~~l~~ 246 (362)
--..- ++.++.. ..+. .....++++++||++.|+.||||-+. .+..+.+-|..+|.+|...|... ...++++++
T Consensus 448 ~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~-wg~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~ 526 (635)
T TIGR01507 448 PPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGR-WGVNYLYGTGAVLSALKAVGIDTREPYIQKALA 526 (635)
T ss_pred CCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccC-CCCccccHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 10111 2222222 2222 22457899999999999999997332 22345666888888888777532 334799999
Q ss_pred HHHhCCCCCCcccCCC----------CCCCcccccchHHHHHHHHh
Q 018000 247 WVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALLR 282 (362)
Q Consensus 247 WL~~rQ~~eGGF~GR~----------nKlvD~CYsfW~~a~l~ll~ 282 (362)
||.++|..+|||.... ....|.-.+.|++-+|...+
T Consensus 527 wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag 572 (635)
T TIGR01507 527 WLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAG 572 (635)
T ss_pred HHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhC
Confidence 9999999999997431 12345556777777765543
No 35
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.61 E-value=6.9e-14 Score=148.34 Aligned_cols=235 Identities=18% Similarity=0.215 Sum_probs=158.0
Q ss_pred HHHHHHHHHHhccCCCC-C--ceeccCChhHHHHHHHHHHHHhCCCC--CHHhHHHHHHHHhhccC--------------
Q 018000 46 RKNHVEYLLRGLQQLGP-S--FCSLDANRPWICYWILHSMALLGEFV--DADLEDRTIEFLSRCQD-------------- 106 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~-~--~~~lD~sr~w~~Yw~l~sL~lLg~~~--~~~~~~~~i~~l~~~Q~-------------- 106 (362)
..+|+++|.+.+-.-+. + .+...+ ..|-+=+++.+|.--|..- .....+++.+||+++|.
T Consensus 278 ~~k~l~~l~~~~~~~~~~g~~~q~~~s-~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~ 356 (634)
T TIGR03463 278 VAAHLEGLEDYRYEDDDRGLRYNGYNS-SEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDP 356 (634)
T ss_pred HHHHHHHHHhhEEEcCCCCEEEeeCCC-CchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCC
Confidence 56899999887754444 2 233333 3488888888886655311 11346789999999995
Q ss_pred CCCCCCCCC--CCCCchhhhHHHHHHHHHcCC---C--CCCChhhHHHHHHHHHhcCCCCCceeeccC---C--------
Q 018000 107 PNGGYGGGP--GQMPHLATTYAAVNALISLGG---E--KSLPSINRSKVYTFLKCMKDPSGAFRMHDA---G-------- 168 (362)
Q Consensus 107 ~dGGFgg~p--g~~shl~~Ty~Av~sL~ilg~---~--~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~---g-------- 168 (362)
+.|||+... ...|..-.|-.++.+|..+.. . +....-...++++||+++|++||||..... +
T Consensus 357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~ 436 (634)
T TIGR03463 357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNP 436 (634)
T ss_pred CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCCh
Confidence 468888763 456788899989988877432 1 111222245789999999999999984221 1
Q ss_pred -------CcccchHHHHHHHHHHh---ccCC--------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHH
Q 018000 169 -------EIDVRACYTAISVASIL---NILD--------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAM 230 (362)
Q Consensus 169 -------e~D~r~~Y~al~~~~LL---~~~~--------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL 230 (362)
..|....+|...++..| .... ...++++++||++.|+.||||.+.-+ ....+-|+++|.+|
T Consensus 437 ~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL 515 (634)
T TIGR03463 437 SEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGL 515 (634)
T ss_pred HHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHH
Confidence 12333444544333322 2221 23478999999999999999965433 34555699999999
Q ss_pred HHhccC-CcccHHHHHHHHHhCCCCCCcccCCCC----------CCCcccccchHHHHHHHHh
Q 018000 231 ILINEA-DRLDLDALIGWVVFRQGVEGGFQGRTN----------KLVDGCYSFWQGGVFALLR 282 (362)
Q Consensus 231 ~llg~~-~~~d~~~l~~WL~~rQ~~eGGF~GR~n----------KlvD~CYsfW~~a~l~ll~ 282 (362)
..+|.. ....++++++||.+.|.++|||.++.. .......+.|++.+|...+
T Consensus 516 ~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g 578 (634)
T TIGR03463 516 RAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAG 578 (634)
T ss_pred HHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHHcC
Confidence 998874 345589999999999999999987532 1344455667777765543
No 36
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.59 E-value=1.2e-13 Score=146.13 Aligned_cols=236 Identities=17% Similarity=0.139 Sum_probs=157.2
Q ss_pred HHHHHHHHHHhcc-CCCCCceeccCChhHHHHHHHHHHHHhCC---CCCHHhHHHHHHHHhhccCCC-------------
Q 018000 46 RKNHVEYLLRGLQ-QLGPSFCSLDANRPWICYWILHSMALLGE---FVDADLEDRTIEFLSRCQDPN------------- 108 (362)
Q Consensus 46 r~~H~~yl~~~l~-~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~---~~~~~~~~~~i~~l~~~Q~~d------------- 108 (362)
..+|++.|.+.+- ...+.+..-..|..|=+=+++.+|.--|. +-......++++||.++|..+
T Consensus 269 ~~~~l~~l~~~~~~~~dg~~~q~~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~ 348 (621)
T TIGR01787 269 FQKHLQRIDDYLWLQLDGMKMQGTGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNL 348 (621)
T ss_pred HHHHHHHHhhcEEEeCCccEEecCCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCC
Confidence 4678888887653 23444544457889999999999976663 222346789999999999977
Q ss_pred --CCCCCC--CCCCCchhhhHHHHHHHHHcCCC-CCCChhhHHHHHHHHHhcCCCCCceeecc-C-C-------------
Q 018000 109 --GGYGGG--PGQMPHLATTYAAVNALISLGGE-KSLPSINRSKVYTFLKCMKDPSGAFRMHD-A-G------------- 168 (362)
Q Consensus 109 --GGFgg~--pg~~shl~~Ty~Av~sL~ilg~~-~~l~~idr~~~~~fL~s~Q~~dGgF~~~~-~-g------------- 168 (362)
|||+.. ....|.+..|-+++.++.++..+ +....-..+++++||.++|++||||.... . +
T Consensus 349 ~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f 428 (621)
T TIGR01787 349 KPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVF 428 (621)
T ss_pred CCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhh
Confidence 666543 22356777787777776665432 12222234679999999999999997421 1 1
Q ss_pred -C--cccc---hHHHHHHHHHHhccC---CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc-
Q 018000 169 -E--IDVR---ACYTAISVASILNIL---DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR- 238 (362)
Q Consensus 169 -e--~D~r---~~Y~al~~~~LL~~~---~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~- 238 (362)
+ .|-. -|-.++.++...+.. ....++++++||+++|+.||+|.+.-+ ....+-|.+++.+|..+|....
T Consensus 429 ~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg-~~y~YgT~~al~aL~~~G~~~~~ 507 (621)
T TIGR01787 429 GDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWG-VNYTYGTGFVLSALAAAGRTYRN 507 (621)
T ss_pred ccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCC-CCCchhHHHHHHHHHHhCCcccC
Confidence 0 1111 133333333333221 135689999999999999999865433 2334458889999999887532
Q ss_pred -ccHHHHHHHHHhCCCCCCcccCCCC----------CCCcccccchHHHHHHHHh
Q 018000 239 -LDLDALIGWVVFRQGVEGGFQGRTN----------KLVDGCYSFWQGGVFALLR 282 (362)
Q Consensus 239 -~d~~~l~~WL~~rQ~~eGGF~GR~n----------KlvD~CYsfW~~a~l~ll~ 282 (362)
..++++++||++.|..+|||..... ..+|...+.|++-+|...+
T Consensus 508 ~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ag 562 (621)
T TIGR01787 508 CPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIAAG 562 (621)
T ss_pred CHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence 4489999999999999999975422 2457777788777665433
No 37
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.56 E-value=2.8e-14 Score=129.97 Aligned_cols=185 Identities=22% Similarity=0.235 Sum_probs=142.9
Q ss_pred HHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh-cCCCCCceeec----
Q 018000 91 ADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMH---- 165 (362)
Q Consensus 91 ~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s-~Q~~dGgF~~~---- 165 (362)
..+++++++||...|+.||||+...+-...++.||.||.++.+||. ++..+++.++||.+ +|..-++|.+.
T Consensus 5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~----evPr~EktiefL~d~~qt~~~~~a~~~~~l 80 (274)
T COG1689 5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGH----EVPRKEKTIEFLYDQMQTAGVGVAMAIEFL 80 (274)
T ss_pred hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCC----cCchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4678999999999999999999887777778999999999999995 45568999999998 44444444321
Q ss_pred ------------------------------c------CCCcccchHHHHHHHHHHhcc-CCHH-----------------
Q 018000 166 ------------------------------D------AGEIDVRACYTAISVASILNI-LDDE----------------- 191 (362)
Q Consensus 166 ------------------------------~------~ge~D~r~~Y~al~~~~LL~~-~~~~----------------- 191 (362)
. +...-++.+|++..++.+.|. ..++
T Consensus 81 ~~lg~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~~~eE~k~~v~~~~re~~~g~~ 160 (274)
T COG1689 81 RILGAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYEYLEEMKEKVIEFVREFGIGDA 160 (274)
T ss_pred HHhcccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcCchHHHHHHHHHHhhhhccccc
Confidence 0 112347889999999998873 1111
Q ss_pred ----------------------HHHHHHHHHHhccCCCCCcCCCCCC-CCchhHhHHHHHHHHHhccCCcccHHHHHHHH
Q 018000 192 ----------------------LLQNVGNYILSCQTYEGGIAGEPGS-EAHGGYTFCGLAAMILINEADRLDLDALIGWV 248 (362)
Q Consensus 192 ----------------------~~~~~~~yI~scQ~~dGGFg~~pg~-esh~~~TfcALaaL~llg~~~~~d~~~l~~WL 248 (362)
..+.+..|=.+| -.+|||...|++ .|-..-||+|+..|.||+... -+++.++|+
T Consensus 161 YGv~~pnt~~t~~aly~l~~k~~~~~v~~Fe~~c-~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k~--~i~~~~rFI 237 (274)
T COG1689 161 YGVTHPNTTMTYQALYTLGSKGPKEEVRHFELCC-GDWGGFTEVPNSYPPYIEPTFYALRGLELLGGKY--CISDHIRFI 237 (274)
T ss_pred cccCCcchHHHHHHHHhhccccchHHHHhHHhcc-ccCCCcccCCCCCCCccchHHHHHhHHHHHccCc--CchHHHHHH
Confidence 123344444444 457999999986 468889999999999999863 367899999
Q ss_pred HhCCCCCCcccCCC-CCCCcccccchHHHHHHHHh
Q 018000 249 VFRQGVEGGFQGRT-NKLVDGCYSFWQGGVFALLR 282 (362)
Q Consensus 249 ~~rQ~~eGGF~GR~-nKlvD~CYsfW~~a~l~ll~ 282 (362)
.+.|+++|||+... -..+-.-|+|.++++|..|.
T Consensus 238 ~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~l~ 272 (274)
T COG1689 238 RSLQNQNGGFRRSYELGISTFENTYRALASLASLH 272 (274)
T ss_pred HHhhcCCCCeeeeEeccccchHHHHHHHHHHHHHh
Confidence 99999999999764 35677889999999998875
No 38
>PLN02993 lupeol synthase
Probab=99.46 E-value=4.3e-12 Score=135.85 Aligned_cols=193 Identities=12% Similarity=0.121 Sum_probs=140.5
Q ss_pred cCChhHHHHHHHHHHHHhCCC-CCHHhHHHHHHHHhhccCC-----C----------CCCCCC--CCCCCchhhhHHHHH
Q 018000 68 DANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQDP-----N----------GGYGGG--PGQMPHLATTYAAVN 129 (362)
Q Consensus 68 D~sr~w~~Yw~l~sL~lLg~~-~~~~~~~~~i~~l~~~Q~~-----d----------GGFgg~--pg~~shl~~Ty~Av~ 129 (362)
-.|..|=+-+++.+|.--|.. -......++.+||++.|-. | |||+.. ....|..-.|..++.
T Consensus 414 ~gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lk 493 (763)
T PLN02993 414 FGSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALK 493 (763)
T ss_pred CCCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHH
Confidence 378999999999998777642 1234678999999999873 2 777765 445788899999988
Q ss_pred HHHHcCCCC------CCChhhHHHHHHHHHhcCCCCCceeecc------------------CCCcccchHHHHHHHHHHh
Q 018000 130 ALISLGGEK------SLPSINRSKVYTFLKCMKDPSGAFRMHD------------------AGEIDVRACYTAISVASIL 185 (362)
Q Consensus 130 sL~ilg~~~------~l~~idr~~~~~fL~s~Q~~dGgF~~~~------------------~ge~D~r~~Y~al~~~~LL 185 (362)
++.+|.... ....-...++++||+++|++||||..-. +--+|-..++|...++..|
T Consensus 494 a~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL 573 (763)
T PLN02993 494 CCMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQAL 573 (763)
T ss_pred HHHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHH
Confidence 654443211 1111123578999999999999997532 1124455677766655444
Q ss_pred ccC----C-------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc--ccHHHHHHHHHhCC
Q 018000 186 NIL----D-------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQ 252 (362)
Q Consensus 186 ~~~----~-------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~--~d~~~l~~WL~~rQ 252 (362)
... + +..++++++||++.|+.||||.+. .+....+-|++||.+|...|+... ..++++++||+++|
T Consensus 574 ~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~-Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q 652 (763)
T PLN02993 574 VLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGN-WGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQ 652 (763)
T ss_pred HHhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccc-cccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 322 1 246789999999999999999764 344667779999999999987632 46899999999999
Q ss_pred CCCCcccCC
Q 018000 253 GVEGGFQGR 261 (362)
Q Consensus 253 ~~eGGF~GR 261 (362)
+++|||...
T Consensus 653 ~~DGGWGEs 661 (763)
T PLN02993 653 RDDGGWGES 661 (763)
T ss_pred CCCCCcCcC
Confidence 999999874
No 39
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.45 E-value=5.6e-12 Score=122.27 Aligned_cols=199 Identities=17% Similarity=0.241 Sum_probs=143.2
Q ss_pred HHHHHHHHHhc------cCCCCCcee--ccCChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCCCC-
Q 018000 47 KNHVEYLLRGL------QQLGPSFCS--LDANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGGP- 115 (362)
Q Consensus 47 ~~H~~yl~~~l------~~l~~~~~~--lD~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg~p- 115 (362)
++-.+|+.+.+ ++.+|+|.. ...+.+|++-+++.+|..... .+++...+++++||.+.|++||+|...-
T Consensus 48 ~~~~~~i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~ 127 (297)
T cd02896 48 DEALKYIRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSP 127 (297)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCC
Confidence 44555555443 446888853 346789999999999988764 4677889999999999999999998531
Q ss_pred -----------CCCCchhhhHHHHHHHHHcCCCCCC----ChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHH
Q 018000 116 -----------GQMPHLATTYAAVNALISLGGEKSL----PSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAIS 180 (362)
Q Consensus 116 -----------g~~shl~~Ty~Av~sL~ilg~~~~l----~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~ 180 (362)
+.++.+..|.+++.+|...+..... .....++.++||.+.+.+ +...|..+.
T Consensus 128 ~~~~~m~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~-------------~~~~Y~~Al 194 (297)
T cd02896 128 VIHREMTGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN-------------LQRPYALAI 194 (297)
T ss_pred ccChhccCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc-------------CCChHHHHH
Confidence 1136778898999998887642110 112356889999997653 233676555
Q ss_pred HHHHhccCCHHHHHHHHHHHHhccCCCCCcCCC--------CC---CCCchhHhHHHHHHHHHhccCCcccHHHHHHHHH
Q 018000 181 VASILNILDDELLQNVGNYILSCQTYEGGIAGE--------PG---SEAHGGYTFCGLAAMILINEADRLDLDALIGWVV 249 (362)
Q Consensus 181 ~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~--------pg---~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~ 249 (362)
++..|.........++.++|.+.|+.|||++.. ++ .......|.+||.++...+. .....+.++||.
T Consensus 195 ~ayALal~~~~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~~--~~~a~~iv~WL~ 272 (297)
T cd02896 195 TAYALALADSPLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLGD--IEYANPIARWLT 272 (297)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcCC--chhHHHHHHHHH
Confidence 554454444446788999999999999998742 11 12367899999999887774 336789999999
Q ss_pred hCCCCCCcccC
Q 018000 250 FRQGVEGGFQG 260 (362)
Q Consensus 250 ~rQ~~eGGF~G 260 (362)
++|+..|||..
T Consensus 273 ~qr~~~Ggf~s 283 (297)
T cd02896 273 EQRNYGGGFGS 283 (297)
T ss_pred hcCCCCCCeeh
Confidence 99999999974
No 40
>PLN03012 Camelliol C synthase
Probab=99.39 E-value=5.1e-11 Score=127.47 Aligned_cols=193 Identities=12% Similarity=0.152 Sum_probs=133.1
Q ss_pred CChhHHHHHHHHHHHHhCCCC-CHHhHHHHHHHHhhccCCC---------------CCCCCC--CCCCCchhhhHHHHHH
Q 018000 69 ANRPWICYWILHSMALLGEFV-DADLEDRTIEFLSRCQDPN---------------GGYGGG--PGQMPHLATTYAAVNA 130 (362)
Q Consensus 69 ~sr~w~~Yw~l~sL~lLg~~~-~~~~~~~~i~~l~~~Q~~d---------------GGFgg~--pg~~shl~~Ty~Av~s 130 (362)
.|..|=+-+++.+|.--|..- ......++.+||++.|..+ |||+.. ....|..-.|..|+.+
T Consensus 415 gSqvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka 494 (759)
T PLN03012 415 GSQLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKC 494 (759)
T ss_pred CCcHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHH
Confidence 788999999999887666421 2336779999999999842 666654 3346888889888866
Q ss_pred HHH---cCCC---CCCChhhHHHHHHHHHhcCCCCCceeeccC----------------C--CcccchHHHHH---HHHH
Q 018000 131 LIS---LGGE---KSLPSINRSKVYTFLKCMKDPSGAFRMHDA----------------G--EIDVRACYTAI---SVAS 183 (362)
Q Consensus 131 L~i---lg~~---~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~----------------g--e~D~r~~Y~al---~~~~ 183 (362)
+.+ +..+ +....-...++++||+++|++||||..-.. + -+|-...-|.. .++.
T Consensus 495 ~lll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~ 574 (759)
T PLN03012 495 CLLFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALI 574 (759)
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHH
Confidence 333 3211 111111235789999999999999964211 1 12333333443 3333
Q ss_pred HhccCC--------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc--ccHHHHHHHHHhCCC
Q 018000 184 ILNILD--------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQG 253 (362)
Q Consensus 184 LL~~~~--------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~--~d~~~l~~WL~~rQ~ 253 (362)
+++... ...++++++||++.|+.||||.+.=+. -..+-|..||.+|...|+... .-++++++||+++|.
T Consensus 575 ~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~ 653 (759)
T PLN03012 575 LFKQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQK 653 (759)
T ss_pred HHhhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcC
Confidence 333211 346789999999999999999976444 344568899999999987532 458999999999999
Q ss_pred CCCcccCCC
Q 018000 254 VEGGFQGRT 262 (362)
Q Consensus 254 ~eGGF~GR~ 262 (362)
+||||.+..
T Consensus 654 ~DGGWGEs~ 662 (759)
T PLN03012 654 DNGGWGESY 662 (759)
T ss_pred CCCCcCCCC
Confidence 999998853
No 41
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=99.37 E-value=2.1e-11 Score=111.43 Aligned_cols=159 Identities=20% Similarity=0.196 Sum_probs=121.0
Q ss_pred CCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCC
Q 018000 60 LGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKS 139 (362)
Q Consensus 60 l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~ 139 (362)
+.+++.-.-+.-+..+||+..+|.+.+.+++++.++++++| |+.+|++.+.-...|+.-.||.|+..|...+.
T Consensus 111 lggs~~f~t~~~Le~ty~~~~~l~~~n~~~~eE~k~~v~~~----~re~~~g~~YGv~~pnt~~t~~aly~l~~k~~--- 183 (274)
T COG1689 111 LGGSEEFGTATPLEATYWMMSALNMVNYEYLEEMKEKVIEF----VREFGIGDAYGVTHPNTTMTYQALYTLGSKGP--- 183 (274)
T ss_pred cCceeecCCCchHHHHHHHHHHHHHhCcCchHHHHHHHHHH----hhhhccccccccCCcchHHHHHHHHhhccccc---
Confidence 33444433455678999999999999987777666666555 66777776655567888899988888766652
Q ss_pred CChhhHHHHHHHHHhcCCCCCceeeccCCC-cccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCC-CCCC
Q 018000 140 LPSINRSKVYTFLKCMKDPSGAFRMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGE-PGSE 217 (362)
Q Consensus 140 l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge-~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~-pg~e 217 (362)
++....|=.+|- .+|||...|++- .-+.-+|.|+.++.||+.. --+.+.++||++.||.+|||..+ .++.
T Consensus 184 -----~~~v~~Fe~~c~-~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~nGGFRRS~~~GI 255 (274)
T COG1689 184 -----KEEVRHFELCCG-DWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQNGGFRRSYELGI 255 (274)
T ss_pred -----hHHHHhHHhccc-cCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcCCCCeeeeEeccc
Confidence 355666666644 489999887653 4566699999999999754 34578899999999999999876 4577
Q ss_pred CchhHhHHHHHHHHHh
Q 018000 218 AHGGYTFCGLAAMILI 233 (362)
Q Consensus 218 sh~~~TfcALaaL~ll 233 (362)
|...+||.||++|..+
T Consensus 256 St~e~tYrAl~~L~~l 271 (274)
T COG1689 256 STFENTYRALASLASL 271 (274)
T ss_pred cchHHHHHHHHHHHHH
Confidence 9999999999999875
No 42
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.37 E-value=1.1e-10 Score=112.56 Aligned_cols=200 Identities=18% Similarity=0.242 Sum_probs=135.5
Q ss_pred HHHHHHHHHHhc------cCCCCCceec----cCChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCC
Q 018000 46 RKNHVEYLLRGL------QQLGPSFCSL----DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGG 113 (362)
Q Consensus 46 r~~H~~yl~~~l------~~l~~~~~~l----D~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg 113 (362)
+++..+||...+ ++.+|+|..- +.+.+|++-+++.+|..... .+++..++++++||.+.|++||||+.
T Consensus 44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 567778887643 5678888643 25688999999999988763 46778899999999999999999984
Q ss_pred C-C--------CCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHH
Q 018000 114 G-P--------GQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASI 184 (362)
Q Consensus 114 ~-p--------g~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~L 184 (362)
. + +..+++..|..++.+|...|... .....++.++||.+.+.+ +..+|....++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~--~~~~i~~a~~yL~~~~~~-------------~~~~y~~al~a~A 188 (292)
T cd02897 124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPS--ERPVVEKALSCLEAALDS-------------ISDPYTLALAAYA 188 (292)
T ss_pred CCcccChhhcCCCCCCcchHHHHHHHHHhcCCcc--ccHHHHHHHHHHHHhccc-------------CCCHHHHHHHHHH
Confidence 2 1 22356778999999999888532 122347899999987664 2235554433322
Q ss_pred hccCCHHHHHHHHHHHH---hccCCCCCcCCC----------CC-CCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHh
Q 018000 185 LNILDDELLQNVGNYIL---SCQTYEGGIAGE----------PG-SEAHGGYTFCGLAAMILINEADRLDLDALIGWVVF 250 (362)
Q Consensus 185 L~~~~~~~~~~~~~yI~---scQ~~dGGFg~~----------pg-~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~ 250 (362)
|.........++.+++. ..++..|+|+.. +. ..++..-|.+||.+|...+.+......+.++||.+
T Consensus 189 L~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~ 268 (292)
T cd02897 189 LTLAGSEKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAK 268 (292)
T ss_pred HHHcCCccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHH
Confidence 21111112334444443 345455667532 11 23577889999999887764333456788899999
Q ss_pred CCCCCCcccC
Q 018000 251 RQGVEGGFQG 260 (362)
Q Consensus 251 rQ~~eGGF~G 260 (362)
.|..+|||..
T Consensus 269 ~q~~~Ggf~s 278 (292)
T cd02897 269 QRNSLGGFSS 278 (292)
T ss_pred cCCCCCCccc
Confidence 9999999974
No 43
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.33 E-value=2.2e-12 Score=90.18 Aligned_cols=43 Identities=40% Similarity=0.845 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhc
Q 018000 192 LLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIN 234 (362)
Q Consensus 192 ~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg 234 (362)
+++++++||++||++||||++.|+.++|..|||||+++|+++|
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999999999986
No 44
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.26 E-value=7.4e-11 Score=122.67 Aligned_cols=237 Identities=18% Similarity=0.187 Sum_probs=164.6
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhhHHHHHHHHHHhcc--CCCCCce------------eccCChhHH---
Q 018000 12 TQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQ--QLGPSFC------------SLDANRPWI--- 74 (362)
Q Consensus 12 ts~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~r~~H~~yl~~~l~--~l~~~~~------------~lD~sr~w~--- 74 (362)
|+..|..|+-.|..++..-. +++ ..-...+-.+||++... ++|+.+. -.|.-+.|.
T Consensus 413 ~~sQ~Wdt~falqalla~~~--~~E-----~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsD 485 (760)
T KOG0497|consen 413 FNSQLWDTAFALQALLAAGL--VDE-----FRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSD 485 (760)
T ss_pred cchhHHHHHHHHHHHHhcCC--cHH-----HHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeecc
Confidence 44667778777776654211 111 12223445579988763 4555431 123323322
Q ss_pred -----H-HHHH---HHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCC-------------C--------CCCchhhh
Q 018000 75 -----C-YWIL---HSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGP-------------G--------QMPHLATT 124 (362)
Q Consensus 75 -----~-Yw~l---~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~p-------------g--------~~shl~~T 124 (362)
. -..+ -...+++..++++..-++++.|+..|+.+|||.... . .+..+-.|
T Consensus 486 ctaEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT 565 (760)
T KOG0497|consen 486 CTAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECT 565 (760)
T ss_pred ccHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccH
Confidence 1 0111 123445556777777889999999999999997531 1 25678889
Q ss_pred HHHHHHHHHcCCCCC-C--Chhh--HHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccC-----CHHHHH
Q 018000 125 YAAVNALISLGGEKS-L--PSIN--RSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-----DDELLQ 194 (362)
Q Consensus 125 y~Av~sL~ilg~~~~-l--~~id--r~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~-----~~~~~~ 194 (362)
-++|.+|......-. . ..|. ..++++||.+.|.+||||.++.+ ++++|..+....-|-.. .-..++
T Consensus 566 ~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~ir 641 (760)
T KOG0497|consen 566 SSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIR 641 (760)
T ss_pred HHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHH
Confidence 999999999865211 1 1222 25789999999999999999874 89999988765433211 135689
Q ss_pred HHHHHHHhccCCCCCcCCCC------------CCCCchhHhHHHHHHHHHhccCCcc--cHHHHHHHHHhCCCCCCccc
Q 018000 195 NVGNYILSCQTYEGGIAGEP------------GSEAHGGYTFCGLAAMILINEADRL--DLDALIGWVVFRQGVEGGFQ 259 (362)
Q Consensus 195 ~~~~yI~scQ~~dGGFg~~p------------g~esh~~~TfcALaaL~llg~~~~~--d~~~l~~WL~~rQ~~eGGF~ 259 (362)
++++||++-|+.|||||..+ |..++...|.+|+.+|.+.|++... .+.|+++.|.+.|.++|-|.
T Consensus 642 ka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfp 720 (760)
T KOG0497|consen 642 KACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFP 720 (760)
T ss_pred HHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcc
Confidence 99999999999999999763 4458999999999999999987654 68999999999999888875
No 45
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=99.26 E-value=4e-12 Score=88.88 Aligned_cols=44 Identities=32% Similarity=0.648 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHHHh
Q 018000 239 LDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLR 282 (362)
Q Consensus 239 ~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ll~ 282 (362)
+|++++++||.++|.++|||++++++.+|+|||||++++|+||+
T Consensus 1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999999999999974
No 46
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.14 E-value=1.5e-09 Score=105.32 Aligned_cols=154 Identities=14% Similarity=0.027 Sum_probs=108.8
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc-------
Q 018000 94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD------- 166 (362)
Q Consensus 94 ~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~------- 166 (362)
+++.++.++++|++||||+..++..++...|.+++.+|.........+.--.++.++||.+.|++||+|....
T Consensus 54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m 133 (297)
T cd02896 54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM 133 (297)
T ss_pred HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence 4556677889999999998776678999999999999988864322222234679999999999999998542
Q ss_pred -CC----CcccchHHHHHHHHHHhccC---------CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHH
Q 018000 167 -AG----EIDVRACYTAISVASILNIL---------DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMIL 232 (362)
Q Consensus 167 -~g----e~D~r~~Y~al~~~~LL~~~---------~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~l 232 (362)
++ +.++ ..+|.++..|+... ....++++++||.+++.. ..+.+.+.-+..||++
T Consensus 134 ~gg~~~~~~~~--~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal 201 (297)
T cd02896 134 TGGVEGSEGDV--SLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALAL 201 (297)
T ss_pred cCCccccCCCc--cchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHH
Confidence 11 1233 44555555554321 124678999999998853 1244445555556777
Q ss_pred hccCCcccHHHHHHHHHhCCCCCCcccCCC
Q 018000 233 INEADRLDLDALIGWVVFRQGVEGGFQGRT 262 (362)
Q Consensus 233 lg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~ 262 (362)
.|.+ ...++.+||.++|..+||+..+.
T Consensus 202 ~~~~---~~~~a~~~L~~~~~~d~~~~~~~ 228 (297)
T cd02896 202 ADSP---LSHAANRKLLSLAKRDGNGWYWW 228 (297)
T ss_pred cCCh---hhHHHHHHHHHHhhhCCCcceec
Confidence 7754 56889999999999999887543
No 47
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.08 E-value=1.1e-08 Score=98.73 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=116.0
Q ss_pred CCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHh-------hccCCCCCCCCCCCC--CCchhhhHHHHHH
Q 018000 60 LGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLS-------RCQDPNGGYGGGPGQ--MPHLATTYAAVNA 130 (362)
Q Consensus 60 l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~-------~~Q~~dGGFgg~pg~--~shl~~Ty~Av~s 130 (362)
.|.+-...-.++.+-...++.-|.-.+. ++++.++++++||. ++|++||||+..++. .++...|.+++.+
T Consensus 11 ~P~gc~Eq~~~~~~p~~~~~~yl~~~~~-~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~ 89 (292)
T cd02897 11 MPYGCGEQNMVNFAPNIYVLDYLKATGQ-LTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKS 89 (292)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHH
Confidence 5654333334555555556666666554 55666677776665 699999999865433 7889999999999
Q ss_pred HHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc--------CC-CcccchHHHHHHHHHHh--ccC-CHHHHHHHHH
Q 018000 131 LISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD--------AG-EIDVRACYTAISVASIL--NIL-DDELLQNVGN 198 (362)
Q Consensus 131 L~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~--------~g-e~D~r~~Y~al~~~~LL--~~~-~~~~~~~~~~ 198 (362)
|.........+.--.++.++||.+.|++||+|.... ++ ..++ .-++.++..|. +.. ....++++++
T Consensus 90 L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~--~~TA~vl~aL~~~g~~~~~~~i~~a~~ 167 (292)
T cd02897 90 FAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEV--ALTAYVLIALLEAGLPSERPVVEKALS 167 (292)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCc--chHHHHHHHHHhcCCccccHHHHHHHH
Confidence 988763212233235789999999999999997421 11 1111 22333333332 322 2356899999
Q ss_pred HHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCC---CCCCccc
Q 018000 199 YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQ---GVEGGFQ 259 (362)
Q Consensus 199 yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ---~~eGGF~ 259 (362)
||.+.+.. ..+..-+..+..||.+++.. ..++++++|.+.+ ...|+|.
T Consensus 168 yL~~~~~~----------~~~~y~~al~a~AL~~~~~~---~~~~~~~~l~~~~~~~~~~~~W~ 218 (292)
T cd02897 168 CLEAALDS----------ISDPYTLALAAYALTLAGSE---KRPEALKKLDELAISEDGTKHWS 218 (292)
T ss_pred HHHHhccc----------CCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhccCCCCCCC
Confidence 99997753 24566677788888888832 2456666665543 3445554
No 48
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.07 E-value=7.8e-11 Score=96.72 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccC-CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhH
Q 018000 146 SKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTF 224 (362)
Q Consensus 146 ~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~-~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~Tf 224 (362)
+++++||.+.|+|||||....+ .|+-.+++++.++..++.. ..+.++++++||+++|+.||||+..+. .+...|.
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t~ 77 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMTA 77 (109)
T ss_dssp -----------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHHH
T ss_pred cccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHHH
Confidence 5789999999999999987643 4554566666555555431 234579999999999999999998732 3455677
Q ss_pred HHHHHHHHhccC-CcccHHHHHHHHHhCCC
Q 018000 225 CGLAAMILINEA-DRLDLDALIGWVVFRQG 253 (362)
Q Consensus 225 cALaaL~llg~~-~~~d~~~l~~WL~~rQ~ 253 (362)
.++++|.+.+.. +...+++.++||.+.|.
T Consensus 78 ~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 78 AAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 778888776653 33458999999998874
No 49
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.01 E-value=4.1e-10 Score=92.43 Aligned_cols=105 Identities=26% Similarity=0.332 Sum_probs=34.7
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccch
Q 018000 95 DRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRA 174 (362)
Q Consensus 95 ~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~ 174 (362)
+++++||++.|++||||+... .++...|++++.+|...+.....+.| ++.++||.+.|++||+|...... .+..
T Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai--~ka~~~l~~~Q~~dG~w~~~~~~--~~~~ 75 (109)
T PF13243_consen 2 KRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAI--KKAIDWLLSHQNPDGGWGYSGGE--YVSM 75 (109)
T ss_dssp -----------------------------------------TS-SSBSS--HHHHHHHHH---TTS--S-TS----HHHH
T ss_pred ccccccccccccccccccccc--cccccccccccccccccCCCCcHHHH--HHHHHHHHHhcCCCCCCCCcCCC--CHHH
Confidence 678999999999999998653 37789999999999999865333444 79999999999999999977322 2222
Q ss_pred HHHHHHHHHHhcc-CCHHHHHHHHHHHHhccC
Q 018000 175 CYTAISVASILNI-LDDELLQNVGNYILSCQT 205 (362)
Q Consensus 175 ~Y~al~~~~LL~~-~~~~~~~~~~~yI~scQ~ 205 (362)
+..++.++.+.+. ...+.++++++||++-|.
T Consensus 76 t~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 76 TAAAIAALALAGVYPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence 3333444433333 245678999999998764
No 50
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.87 E-value=1e-07 Score=90.65 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=58.7
Q ss_pred hHHHHHHHHhhccCCCCCCCCCCCC-CCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeec
Q 018000 93 LEDRTIEFLSRCQDPNGGYGGGPGQ-MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMH 165 (362)
Q Consensus 93 ~~~~~i~~l~~~Q~~dGGFgg~pg~-~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~ 165 (362)
.+++++++|.++|++||||+..++. .++...|.+++.+|...+.....+.--.++.++||.+.|++||+|...
T Consensus 50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~ 123 (282)
T cd02891 50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFREL 123 (282)
T ss_pred HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCC
Confidence 4567889999999999999988877 899999999999998775421111112578899999999999999864
No 51
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.66 E-value=5.5e-07 Score=85.18 Aligned_cols=188 Identities=21% Similarity=0.311 Sum_probs=124.2
Q ss_pred cCCCCCceec---cCChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCCCCCC---------CCchhh
Q 018000 58 QQLGPSFCSL---DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGGPGQ---------MPHLAT 123 (362)
Q Consensus 58 ~~l~~~~~~l---D~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~---------~shl~~ 123 (362)
++-+|+|... ..+.+|++=+++..+..... .+++...+++++||.+.|++||.|...... ...+..
T Consensus 10 ~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~~~~~~l 89 (246)
T PF07678_consen 10 RRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGVEDDIAL 89 (246)
T ss_dssp B-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGGTHHHHH
T ss_pred CCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCCCCCeee
Confidence 4568888765 45788999999999998876 457888999999999999999999753110 124556
Q ss_pred hHHHHHHHHHcCCCC----CCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccC-CHHHHHHHHH
Q 018000 124 TYAAVNALISLGGEK----SLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNIL-DDELLQNVGN 198 (362)
Q Consensus 124 Ty~Av~sL~ilg~~~----~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~-~~~~~~~~~~ 198 (362)
|.+.+.+|.-.+.-- .......+++++||.+... .+...|....++..|... .....+.+.+
T Consensus 90 TA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~-------------~~~~~Y~lAl~aYAL~la~~~~~~~~~~~ 156 (246)
T PF07678_consen 90 TAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD-------------NIQDPYTLALVAYALALAGDSPQASKLLN 156 (246)
T ss_dssp HHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG-------------CTSSHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc-------------ccCCHHHHHHHHHHHHhhcccchHHHHHH
Confidence 666666666555210 0111235788999986511 123366654444434333 4567788889
Q ss_pred HHHhccCCCCCcCCCCCCC--------------CchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000 199 YILSCQTYEGGIAGEPGSE--------------AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 260 (362)
Q Consensus 199 yI~scQ~~dGGFg~~pg~e--------------sh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G 260 (362)
-|.+....+||....+... .....|.+||.++... .+.......++||.+.|+..|||..
T Consensus 157 ~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~~Ggf~S 230 (246)
T PF07678_consen 157 KLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNSGGGFGS 230 (246)
T ss_dssp HHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTTTSSTSS
T ss_pred HHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCCCccCc
Confidence 9988887777753322211 2356788888666655 4445678999999999999999975
No 52
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.32 E-value=4.6e-06 Score=79.26 Aligned_cols=107 Identities=13% Similarity=0.108 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCCCCceeeccCC-CcccchHHHHHHHHHHh---ccCCHHHHHHHHHHHHhccCCCCCcCCCCC------
Q 018000 146 SKVYTFLKCMKDPSGAFRMHDAG-EIDVRACYTAISVASIL---NILDDELLQNVGNYILSCQTYEGGIAGEPG------ 215 (362)
Q Consensus 146 ~~~~~fL~s~Q~~dGgF~~~~~g-e~D~r~~Y~al~~~~LL---~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg------ 215 (362)
++.+++|.++|++||||...++. ..|+..|-.++-.+... +..++..++++++||.+.|..+|+|.....
T Consensus 52 ~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~ 131 (282)
T cd02891 52 RKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREM 131 (282)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhh
Confidence 57899999999999999877655 56664444433333322 234556789999999999999999986433
Q ss_pred ---CCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCC
Q 018000 216 ---SEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQ 252 (362)
Q Consensus 216 ---~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ 252 (362)
..+....|.+++.+|...|......+.+.++||..+.
T Consensus 132 ~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~ 171 (282)
T cd02891 132 KGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQL 171 (282)
T ss_pred cCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhc
Confidence 2244467889999998888754446789999999765
No 53
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=98.25 E-value=1.9e-05 Score=83.14 Aligned_cols=231 Identities=15% Similarity=0.211 Sum_probs=146.3
Q ss_pred HHHHHhccCCCCCc---------eeccCChhHHHHHHHHHHHHhCCCCCHHh---HHHHHHHHhhccCCC----------
Q 018000 51 EYLLRGLQQLGPSF---------CSLDANRPWICYWILHSMALLGEFVDADL---EDRTIEFLSRCQDPN---------- 108 (362)
Q Consensus 51 ~yl~~~l~~l~~~~---------~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~---~~~~i~~l~~~Q~~d---------- 108 (362)
+++++++.++|+-. ++.. +..|.+=++|.++-.-+.. ++. ..+.-+|+.+-|-++
T Consensus 388 ~~Fkkhl~Ri~d~lw~gedGmkmq~~~-sQ~Wdt~falqalla~~~~--~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~y 464 (760)
T KOG0497|consen 388 DAFKKHLARIPDFLWIAEDGMKMQGFN-SQLWDTAFALQALLAAGLV--DEFRSTLVKAYDFLKKSQVRENPPGDFKKMY 464 (760)
T ss_pred HHHHHHhccccCeEEEcCCCceEeecc-hhHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhhcccccCCCcchhhhe
Confidence 45666666555422 2333 7899999999887665543 443 456778998887543
Q ss_pred -----CCCCCCCCC--CCchhhhHHHHHHHHHcCCC---CCCChhhHHH---HHHHHHhcCCCCCceeec----------
Q 018000 109 -----GGYGGGPGQ--MPHLATTYAAVNALISLGGE---KSLPSINRSK---VYTFLKCMKDPSGAFRMH---------- 165 (362)
Q Consensus 109 -----GGFgg~pg~--~shl~~Ty~Av~sL~ilg~~---~~l~~idr~~---~~~fL~s~Q~~dGgF~~~---------- 165 (362)
|||+.+... .+=.-+|.=|+.+..+++.. .....+|+++ .++.|..+|..+|||..-
T Consensus 465 R~~~kG~wtfS~~d~gw~vsDctaEal~~~lll~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE 544 (760)
T KOG0497|consen 465 RHISKGGWTFSDRDQGWPVSDCTAEALKCCLLLSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLE 544 (760)
T ss_pred eccccccccccccccceeeccccHHHHHHHHHhcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHH
Confidence 333332211 22334566666666666542 1235667776 466788999999999752
Q ss_pred ------cCCCcccchHH--HH---HHHHHHhccC-C-------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHH
Q 018000 166 ------DAGEIDVRACY--TA---ISVASILNIL-D-------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCG 226 (362)
Q Consensus 166 ------~~ge~D~r~~Y--~a---l~~~~LL~~~-~-------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcA 226 (362)
+.+..++...| |+ ++.+...... + ...++++++||.+.|.+||.|=+.-|. --.+-|+.|
T Consensus 545 ~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgv-CFtY~t~Fa 623 (760)
T KOG0497|consen 545 LLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGV-CFTYGTWFA 623 (760)
T ss_pred hcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhH-HHHHHHHHh
Confidence 12445554444 32 3333333221 1 135778999999999999998654332 234568899
Q ss_pred HHHHHHhccCC--cccHHHHHHHHHhCCCCCCcccCCC----CC--------CCcccccchHHHHHHHHhhhh
Q 018000 227 LAAMILINEAD--RLDLDALIGWVVFRQGVEGGFQGRT----NK--------LVDGCYSFWQGGVFALLRRFH 285 (362)
Q Consensus 227 LaaL~llg~~~--~~d~~~l~~WL~~rQ~~eGGF~GR~----nK--------lvD~CYsfW~~a~l~ll~~~~ 285 (362)
+-+|+..|+.. ...+++++++|++.|+.+||+.-.. +| -..+--++|+.-.|-+.+...
T Consensus 624 ~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~ 696 (760)
T KOG0497|consen 624 LRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAE 696 (760)
T ss_pred cchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhcCCcc
Confidence 99999999863 3458999999999999999997642 11 133445678877776666543
No 54
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=98.05 E-value=1.4e-05 Score=82.56 Aligned_cols=209 Identities=18% Similarity=0.153 Sum_probs=133.4
Q ss_pred hhhHHHHHHHHHHhcc--CCCCCcee-------ccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCC
Q 018000 43 ELQRKNHVEYLLRGLQ--QLGPSFCS-------LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGG 113 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~--~l~~~~~~-------lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg 113 (362)
-|.+..|.++....+. ..|+++.. -|+.... -...++.+. -+..+.++.++||..+|+..|||..
T Consensus 229 ~L~~kq~~~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~-----~~~~al~~~-~~~~~~~~~l~~V~~~q~~~g~~a~ 302 (517)
T COG1657 229 FLLDKQVLKYADWAVKRKFSPGGWGFSNINTGYPDADDTA-----GVVRALIGV-QSLPNFELGLDWVLYMQNKLGGLAV 302 (517)
T ss_pred hhHHHHHHHhhccccccccCCCccceeecccCCCCchhhh-----HHHHHHHhh-cchhhHHhhhhHhhhcccccCceee
Confidence 4666677777666554 23444431 2333211 112233333 2234556699999999999999876
Q ss_pred CCCC-------------------CCchhhhHHHHHHHHHcCC-CCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccc
Q 018000 114 GPGQ-------------------MPHLATTYAAVNALISLGG-EKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVR 173 (362)
Q Consensus 114 ~pg~-------------------~shl~~Ty~Av~sL~ilg~-~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r 173 (362)
.+-. .+-+..|-..+.+|+.+.. .++.+....++.+.||++.|.++|+|.+..+ ++
T Consensus 303 ~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~----v~ 378 (517)
T COG1657 303 YEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG----VC 378 (517)
T ss_pred eccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEE----EE
Confidence 4321 2223333333444444332 1111123457899999999999999998874 67
Q ss_pred hHHHHHHHHHHhccCCH-----HHHHHHHHHHHhccCCCCCcCCCCCC---------C-CchhHhHHHHHHHHHhccCCc
Q 018000 174 ACYTAISVASILNILDD-----ELLQNVGNYILSCQTYEGGIAGEPGS---------E-AHGGYTFCGLAAMILINEADR 238 (362)
Q Consensus 174 ~~Y~al~~~~LL~~~~~-----~~~~~~~~yI~scQ~~dGGFg~~pg~---------e-sh~~~TfcALaaL~llg~~~~ 238 (362)
.+|..+..++.+....+ ..+.+++.|+.+||+.+|||+..-.. + +-.-.|-+|+..+....++..
T Consensus 379 ~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~ 458 (517)
T COG1657 379 YIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQ 458 (517)
T ss_pred EEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccch
Confidence 88888888777665432 46889999999999999999975222 2 233456777777777666644
Q ss_pred ccHHHHHHHHHhCCCCCCcccCC
Q 018000 239 LDLDALIGWVVFRQGVEGGFQGR 261 (362)
Q Consensus 239 ~d~~~l~~WL~~rQ~~eGGF~GR 261 (362)
.-++..++.+.++|.++|-++++
T Consensus 459 ~~i~~~~~~~~~~~~~~g~~~~~ 481 (517)
T COG1657 459 EAIKPGINLLVSDQEPDGSWREA 481 (517)
T ss_pred hhhcccccccccCcCCCCccccc
Confidence 34788899999999988777665
No 55
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.03 E-value=3.8e-05 Score=72.64 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=97.1
Q ss_pred HHHhhccCCCCCCCCC-CCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc-------CCCc
Q 018000 99 EFLSRCQDPNGGYGGG-PGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD-------AGEI 170 (362)
Q Consensus 99 ~~l~~~Q~~dGGFgg~-pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~-------~ge~ 170 (362)
+-+++.+++||||+.. ....++...|.+++-.|......-..+.-...+.++||.+.|++||+|.... .|..
T Consensus 4 qr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~ 83 (246)
T PF07678_consen 4 QRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGV 83 (246)
T ss_dssp HHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGG
T ss_pred HHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCC
Confidence 3467889999999988 6778999999999999998875311222224678999999999999997531 1212
Q ss_pred ccchHHHHHHHHHHhccC---------CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccH
Q 018000 171 DVRACYTAISVASILNIL---------DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDL 241 (362)
Q Consensus 171 D~r~~Y~al~~~~LL~~~---------~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~ 241 (362)
+-..+.+|.++.+|+... ....++++.+||.+-.. ...+. |+ -||.+.++.-..+..+.
T Consensus 84 ~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~----------~~~~~-Y~-lAl~aYAL~la~~~~~~ 151 (246)
T PF07678_consen 84 EDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD----------NIQDP-YT-LALVAYALALAGDSPQA 151 (246)
T ss_dssp THHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG----------CTSSH-HH-HHHHHHHHHHTTTCHHH
T ss_pred CCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc----------ccCCH-HH-HHHHHHHHHhhcccchH
Confidence 233467777777776543 13568899999977511 01122 22 34444444322145567
Q ss_pred HHHHHHHHhCCCCCCcccC
Q 018000 242 DALIGWVVFRQGVEGGFQG 260 (362)
Q Consensus 242 ~~l~~WL~~rQ~~eGGF~G 260 (362)
..++.-|.++...+||...
T Consensus 152 ~~~~~~L~~~a~~~~~~~~ 170 (246)
T PF07678_consen 152 SKLLNKLNSMATTEGGLRY 170 (246)
T ss_dssp HHHHHHHHCHCEETTTTCE
T ss_pred HHHHHHHHHhhhhccccCc
Confidence 8888888887776666633
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=97.01 E-value=0.0024 Score=66.28 Aligned_cols=199 Identities=20% Similarity=0.260 Sum_probs=122.1
Q ss_pred CChhHHHHHHHHHHHHhCCCCCH-------------HhHHHHHHHHhhccCCCCCCCCCC--CCCCchhhhHHHHHHHHH
Q 018000 69 ANRPWICYWILHSMALLGEFVDA-------------DLEDRTIEFLSRCQDPNGGYGGGP--GQMPHLATTYAAVNALIS 133 (362)
Q Consensus 69 ~sr~w~~Yw~l~sL~lLg~~~~~-------------~~~~~~i~~l~~~Q~~dGGFgg~p--g~~shl~~Ty~Av~sL~i 133 (362)
.+.-|-..|+.-.+.-=|.--.+ ....+..+|-...+..-||++... ...++...|-.++.++..
T Consensus 197 ~~q~wD~~f~~~~~~~~g~~~~~~~aiaka~~~L~~kq~~~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~ 276 (517)
T COG1657 197 GSQVWDGGFIRRALLVAGLAETPIPAIAKALMFLLDKQVLKYADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRALIG 276 (517)
T ss_pred ccccccchhhhhhhhhcCccccchHhHHhhhhhhHHHHHHHhhccccccccCCCccceeecccCCCCchhhhHHHHHHHh
Confidence 35667777777666554431111 111222233223333345555433 367888888888888877
Q ss_pred cCCCCCCChhhHHHHHHHHHhcCCCCCceeeccC----------------CCcccchHHH---HHHHHHHhcc-CC---H
Q 018000 134 LGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA----------------GEIDVRACYT---AISVASILNI-LD---D 190 (362)
Q Consensus 134 lg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~----------------ge~D~r~~Y~---al~~~~LL~~-~~---~ 190 (362)
..+ ..+-++.+.|+..+|+..|+|...+. ..+|....=| ....+.-++. ++ .
T Consensus 277 ~~~-----~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~ 351 (517)
T COG1657 277 VQS-----LPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDG 351 (517)
T ss_pred hcc-----hhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCccHHHHhhhhhccccccC
Confidence 763 34456799999999999999986321 1111100111 0111111222 22 2
Q ss_pred HHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc--ccHHHHHHHHHhCCCCCCcccCCCCCCCcc
Q 018000 191 ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR--LDLDALIGWVVFRQGVEGGFQGRTNKLVDG 268 (362)
Q Consensus 191 ~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~--~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~ 268 (362)
..++++++||++-|..+|-+-+.=+. --.+-|.-++.+|.+.|..+. .-+.+++.|+..+|+++|||..--+-.+|.
T Consensus 352 ~~i~~a~e~LL~~Q~~~GsW~g~w~v-~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~ 430 (517)
T COG1657 352 QPIERALEWLLSDQEPDGSWYGRWGV-CYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDP 430 (517)
T ss_pred CcccHHHhhhhhhccccCceeeEEEE-EEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccccccc
Confidence 45889999999999999976543111 123345566777777776642 237899999999999999999988888888
Q ss_pred cccch
Q 018000 269 CYSFW 273 (362)
Q Consensus 269 CYsfW 273 (362)
-|++=
T Consensus 431 ~~~~t 435 (517)
T COG1657 431 VYTGT 435 (517)
T ss_pred ccccc
Confidence 88764
No 57
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.076 Score=61.63 Aligned_cols=201 Identities=16% Similarity=0.198 Sum_probs=114.2
Q ss_pred ccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHH-------hhccCCCCCCCCC--CCCCCchhhhHHH
Q 018000 57 LQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFL-------SRCQDPNGGYGGG--PGQMPHLATTYAA 127 (362)
Q Consensus 57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l-------~~~Q~~dGGFgg~--pg~~shl~~Ty~A 127 (362)
|..+|.+-......-..-.++++.=|...+. +.++.+++++++| +..+++||.|+.. ....+..+-|.+.
T Consensus 930 Ll~lP~GcGEQnMi~faPni~v~~YL~~t~q-~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafv 1008 (1436)
T KOG1366|consen 930 LLRLPYGCGEQNMINFAPNIYVLKYLPKTNQ-LTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFV 1008 (1436)
T ss_pred hccCCCCcccceeecccchhhHHHHHhhhhc-cChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHH
Confidence 3345644333222222234456666666666 6677888888886 5677899998743 2345666677777
Q ss_pred HHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc--------CCCcc--------------cc---hHHHH----
Q 018000 128 VNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD--------AGEID--------------VR---ACYTA---- 178 (362)
Q Consensus 128 v~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~--------~ge~D--------------~r---~~Y~a---- 178 (362)
+-++......-.++.--..++++||...|+++|+|.... ++..+ +. .++..
T Consensus 1009 lr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e~~~v~~~~~qg~l~~~~~l~~~~l~~~~~~~~~~~~~a~~~~~ 1088 (1436)
T KOG1366|consen 1009 LRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKEVGEVLHNEMQGGLQDIVALTAIVLSVILDVDNASIQKAVAYLE 1088 (1436)
T ss_pred HHHhhhccCceEecHHHHHHHHHHHHHhhccCceEeccccccchhhhcCCCCcceeeeEeeeeeccchhhHHHHHHHHHh
Confidence 777766643212232234689999999999999997531 12222 11 11111
Q ss_pred -------------HHHHHHhcc-CCHHHHHHHHHHHHhccCCCCC----cCC----------CC-CCCCchhHhHHHHHH
Q 018000 179 -------------ISVASILNI-LDDELLQNVGNYILSCQTYEGG----IAG----------EP-GSEAHGGYTFCGLAA 229 (362)
Q Consensus 179 -------------l~~~~LL~~-~~~~~~~~~~~yI~scQ~~dGG----Fg~----------~p-g~esh~~~TfcALaa 229 (362)
..++..+.. ..+...+.+.. +.+--...|+ |.. .+ ....+...|.+||.+
T Consensus 1089 ~~~~~~~~~~~~~a~~ayAl~l~~sp~a~~~~~~-l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s~~VE~tsYaLL~ 1167 (1436)
T KOG1366|consen 1089 ESLDSGSMDVYTVAITAYALQLAKSPQAAKALAK-LKSLARVEGDRRYWWASALKAKNAVKYSPQARSIDVETTAYALLA 1167 (1436)
T ss_pred hccCccccccchHHHHHHHHHhccCchHHHHHHh-hhhhhcccCCceeeeeccccccCcccCCCccchhhccchHHHHHH
Confidence 111111111 11122222222 3332222232 111 11 122477889999999
Q ss_pred HHHhccCCcccHHHHHHHHHhCCCCCCcccCC
Q 018000 230 MILINEADRLDLDALIGWVVFRQGVEGGFQGR 261 (362)
Q Consensus 230 L~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR 261 (362)
+.++...+ -+...++||.+.+...|||+--
T Consensus 1168 ~~~~~~~~--~~~pivrWl~~qr~~~GGf~ST 1197 (1436)
T KOG1366|consen 1168 YLLLAQVD--YALPIVRWLVEQRNALGGFSST 1197 (1436)
T ss_pred HHHhcccC--cCchhHhhhhhhhcccCceeeh
Confidence 99988765 4667899999988899999854
No 58
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=96.15 E-value=0.069 Score=51.94 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=65.2
Q ss_pred HHhHHHHHHHHhhccCCCCCCCCC-CCC-CCchhhhH------HHHHHHHHcCC-CCCCChhh----------HHHHHHH
Q 018000 91 ADLEDRTIEFLSRCQDPNGGYGGG-PGQ-MPHLATTY------AAVNALISLGG-EKSLPSIN----------RSKVYTF 151 (362)
Q Consensus 91 ~~~~~~~i~~l~~~Q~~dGGFgg~-pg~-~shl~~Ty------~Av~sL~ilg~-~~~l~~id----------r~~~~~f 151 (362)
.+-..++++||++.|+++|||... |-. .-|-..|| .++..|..+.. ...+..++ .++.++|
T Consensus 66 ~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ 145 (290)
T TIGR02474 66 RDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIEC 145 (290)
T ss_pred HHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999853 210 11221222 33444433321 11112221 2578999
Q ss_pred HHhcCCCCCceeeccCCCcc----------------cchHHHHHHHHHHhccC--CH---HHHHHHHHHHHhccCC
Q 018000 152 LKCMKDPSGAFRMHDAGEID----------------VRACYTAISVASILNIL--DD---ELLQNVGNYILSCQTY 206 (362)
Q Consensus 152 L~s~Q~~dGgF~~~~~ge~D----------------~r~~Y~al~~~~LL~~~--~~---~~~~~~~~yI~scQ~~ 206 (362)
|++.|.++||+...+..-.| +.+.=++-.+..|+.+. ++ ..++.+++|+.+..-.
T Consensus 146 ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~ 221 (290)
T TIGR02474 146 ILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIR 221 (290)
T ss_pred HHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCC
Confidence 99999998877654321111 11222334445555543 22 3467899999988743
No 59
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=95.67 E-value=0.029 Score=54.53 Aligned_cols=95 Identities=18% Similarity=0.151 Sum_probs=58.4
Q ss_pred CCCcccchHHHHHHHHHHh-ccC----CHHHHHHHHHHHHhccCCCCCcCCCCC--CCCchhHhHH---HHHHHHHhcc-
Q 018000 167 AGEIDVRACYTAISVASIL-NIL----DDELLQNVGNYILSCQTYEGGIAGEPG--SEAHGGYTFC---GLAAMILINE- 235 (362)
Q Consensus 167 ~ge~D~r~~Y~al~~~~LL-~~~----~~~~~~~~~~yI~scQ~~dGGFg~~pg--~esh~~~Tfc---ALaaL~llg~- 235 (362)
.+..|=..|+..+.-+.-+ ..- -...+.++++||++.|+++|||...-- ..-|...||+ .+.+|.+|..
T Consensus 38 ~~TiDN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i 117 (290)
T TIGR02474 38 SGTIDNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDI 117 (290)
T ss_pred cccccCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHH
Confidence 3456667788776554332 111 135678999999999999999986421 1123333333 2333444321
Q ss_pred ----CC------------cccHHHHHHHHHhCCCCCCcccCC
Q 018000 236 ----AD------------RLDLDALIGWVVFRQGVEGGFQGR 261 (362)
Q Consensus 236 ----~~------------~~d~~~l~~WL~~rQ~~eGGF~GR 261 (362)
.. ..-+++++.+|+.-|.+.||..++
T Consensus 118 ~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~ 159 (290)
T TIGR02474 118 ANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTV 159 (290)
T ss_pred HhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCc
Confidence 10 113689999999999988887764
No 60
>PLN02279 ent-kaur-16-ene synthase
Probab=94.00 E-value=0.26 Score=54.25 Aligned_cols=210 Identities=14% Similarity=0.167 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCC----CC
Q 018000 44 LQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQ----MP 119 (362)
Q Consensus 44 l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~----~s 119 (362)
+.-+.+++-+++.|+...-+-. +.=+-|+.-.-+. +..-.+ .-...++||+..|.+||+||..+.. .-
T Consensus 33 ~~~~~~~~~i~~~l~~~e~s~s------~YDTAWvamv~~~-~~~~~p-~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D 104 (784)
T PLN02279 33 VSFEGTKERIKKMFDKVELSVS------SYDTAWVAMVPSP-NSQQAP-LFPECVKWLLENQLEDGSWGLPHDHPLLVKD 104 (784)
T ss_pred ccchhHHHHHHHHhccCcCCCc------hhhhHHHHhcccC-CCCCCC-CChHHHHHHHhcCCCCCCCCCCCCCcchhHH
Confidence 4456777888887775411111 1223354433222 221111 2357899999999999999965321 23
Q ss_pred chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh----cCC----CCCceeec-cC-----CCcccchHHHHHHHHHHh
Q 018000 120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC----MKD----PSGAFRMH-DA-----GEIDVRACYTAISVASIL 185 (362)
Q Consensus 120 hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s----~Q~----~dGgF~~~-~~-----ge~D~r~~Y~al~~~~LL 185 (362)
-+.+|.|||.||..-+.. -..+ ++-+.||.+ +.. .-=||..- |. .+.++...|.--.+-.++
T Consensus 105 ~ll~TlAcvlAL~~w~~~--~~~~--~~gl~fi~~n~~~~~d~~~~~pvGfei~fP~ll~~a~~~gl~~~~~~~~l~~~~ 180 (784)
T PLN02279 105 ALSSTLASILALKKWGVG--EEQI--NKGLQFIELNSASVTDEKQHKPIGFDIIFPGMIEYAKDLDLNLPLGSEVVDAML 180 (784)
T ss_pred hhHHHHHHHHHHHHHhcC--cccc--hhhHHHHHHHHHhhcccccCCCceEEEehHHHHHHHHHcCCCCCCChHHHHHHH
Confidence 568999999999886532 1122 233355552 111 01345431 10 001111122111111111
Q ss_pred ccCCH------------------HHHHHHH---H--HHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHH
Q 018000 186 NILDD------------------ELLQNVG---N--YILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLD 242 (362)
Q Consensus 186 ~~~~~------------------~~~~~~~---~--yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~ 242 (362)
..... ...++.. + =|...|..+|.|..+|. .|.+++. . . -| +
T Consensus 181 ~~r~~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~SPs------aTAa~l~-----~-~--~~-~ 245 (784)
T PLN02279 181 HKRDLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSPS------TTAAAFS-----H-L--QN-A 245 (784)
T ss_pred HhhhHHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCcccCcH------HHHHHHH-----c-c--CC-h
Confidence 11100 1112322 2 25678999999998764 3444432 1 1 12 7
Q ss_pred HHHHHHHhCCC-CCCcccCCCCC-CCcccccchHHHHHHHHhh
Q 018000 243 ALIGWVVFRQG-VEGGFQGRTNK-LVDGCYSFWQGGVFALLRR 283 (362)
Q Consensus 243 ~l~~WL~~rQ~-~eGGF~GR~nK-lvD~CYsfW~~a~l~ll~~ 283 (362)
++++||.+-+. .+|| -|+- ++|....-|++.+|.-++-
T Consensus 246 ~~~~yL~~~~~~~~g~---vP~~yp~~~fe~l~lvd~L~rlGi 285 (784)
T PLN02279 246 GCLRYLRSLLQKFGNA---VPTVYPLDQYARLSMVDTLERLGI 285 (784)
T ss_pred HHHHHHHHHHHhcCCC---CCCCCcccHHHHhHHHHHHHHhCC
Confidence 88899976554 4444 4443 4666666677777755543
No 61
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=90.83 E-value=4.2 Score=42.75 Aligned_cols=181 Identities=18% Similarity=0.235 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhCCCCCHH---hHHHHHHHHhhccCCCCCCCCCCCCC-----------CchhhhHH-----HHHHHHHc
Q 018000 74 ICYWILHSMALLGEFVDAD---LEDRTIEFLSRCQDPNGGYGGGPGQM-----------PHLATTYA-----AVNALISL 134 (362)
Q Consensus 74 ~~Yw~l~sL~lLg~~~~~~---~~~~~i~~l~~~Q~~dGGFgg~pg~~-----------shl~~Ty~-----Av~sL~il 134 (362)
+-+|.-.+..++-..-+++ ..+++|+.|.+||.+||=++..+... .|-..|.. ++......
T Consensus 62 ~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~t 141 (520)
T PF07944_consen 62 VGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEAT 141 (520)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHH
Confidence 4466655444443322333 35568999999999998555433211 23334432 33333445
Q ss_pred CCCCCCChhhHHHHHHHH---HhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCH-HHHHHHHHHHHhcc-CC---
Q 018000 135 GGEKSLPSINRSKVYTFL---KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDD-ELLQNVGNYILSCQ-TY--- 206 (362)
Q Consensus 135 g~~~~l~~idr~~~~~fL---~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~-~~~~~~~~yI~scQ-~~--- 206 (362)
|++.+++.+ .++.+|+ .+...++-.......+...+ -.++..|..+-.+ ...+-+..|+...- .+
T Consensus 142 G~~~~L~v~--~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~ 214 (520)
T PF07944_consen 142 GNERALDVA--TKLADWVYRRLSRLGPEPGQKMGYPEHGGI-----NEALVRLYEITGDERYLDLAEYFVDQRGFDPYDL 214 (520)
T ss_pred CcHHHHHHH--HHHHHHHHHHhccCCHHHhhcccccccchH-----HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCch
Confidence 665444443 5778888 33322221111111111122 1334444443322 33333333433221 11
Q ss_pred CCCcCCCCCCC-----Cchh---HhHHHHHHHHHhccCC-ccc-HHHHHHHHHhCCC-CCCcccCC
Q 018000 207 EGGIAGEPGSE-----AHGG---YTFCGLAAMILINEAD-RLD-LDALIGWVVFRQG-VEGGFQGR 261 (362)
Q Consensus 207 dGGFg~~pg~e-----sh~~---~TfcALaaL~llg~~~-~~d-~~~l~~WL~~rQ~-~eGGF~GR 261 (362)
.-+....|+.+ +|+. |-+.+++-+..+...+ ..+ .+++.+.+..+++ ..||+.++
T Consensus 215 ~~~~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~ 280 (520)
T PF07944_consen 215 AYGQDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSD 280 (520)
T ss_pred hhcCccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCC
Confidence 12233334433 5553 5666666666654322 222 5777888887777 77888877
No 62
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=90.21 E-value=0.73 Score=45.62 Aligned_cols=140 Identities=17% Similarity=0.103 Sum_probs=79.9
Q ss_pred CchhhhHH----HHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhcc----CC-
Q 018000 119 PHLATTYA----AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNI----LD- 189 (362)
Q Consensus 119 shl~~Ty~----Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~----~~- 189 (362)
.|..++|+ +|.+|+..+. .+....+.+++...+.. ..|.. .-.+|+ .|++++++.-. ..
T Consensus 139 g~P~TnyYq~sL~vLALCv~~~-----~~~~~~v~kL~~~~~~~-~~~~~--~~sVDT----~AmA~LALtCv~~~~~~~ 206 (326)
T PF01122_consen 139 GHPLTNYYQYSLGVLALCVHNK-----RVSLSVVAKLLKAENHN-FYHGS--QFSVDT----GAMAVLALTCVKNSNPNG 206 (326)
T ss_dssp TS-SSGHHHHHHHHHHHHHTTH-----HHHHHHHHHHHHHHHSS-TSS-S--TCHHHH----HHHHHHHHHHHHTTTSTT
T ss_pred CCCCCcccchHHHHHHHHccCC-----CcCHHHHHHHHHHHHhh-cccCC--CCCccH----HHHHHHHHHHHhccCcCc
Confidence 34455553 4556666653 34445566777665553 22222 224566 55666655321 11
Q ss_pred -------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc---ccHHHHHHHHHhCCCCCCccc
Q 018000 190 -------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR---LDLDALIGWVVFRQGVEGGFQ 259 (362)
Q Consensus 190 -------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~---~d~~~l~~WL~~rQ~~eGGF~ 259 (362)
...++++++.|++-|..||-||. .+.|--|+.+|...+.... .+-.++++++... ..+|.|+
T Consensus 207 ~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~~G~F~ 278 (326)
T PF01122_consen 207 PELRRRIQQAIRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-ISQGAFQ 278 (326)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HTTTTT-
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hhcCCCC
Confidence 13467888999999999999984 4668888998888877532 4578899999863 3578887
Q ss_pred CCCCCCCcccccchHHHHHHHHhhhhhcc
Q 018000 260 GRTNKLVDGCYSFWQGGVFALLRRFHSII 288 (362)
Q Consensus 260 GR~nKlvD~CYsfW~~a~l~ll~~~~~~~ 288 (362)
.- -=+-..||.|..-...|
T Consensus 279 nP----------~a~aQiLPaL~gKTYLD 297 (326)
T PF01122_consen 279 NP----------MAIAQILPALNGKTYLD 297 (326)
T ss_dssp SH----------HHHHHHHHHHTT--GGG
T ss_pred CH----------HHHHHHHHHHcCCCccc
Confidence 53 22445565555544444
No 63
>PLN02592 ent-copalyl diphosphate synthase
Probab=82.72 E-value=2.3 Score=47.05 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=39.0
Q ss_pred HHHHHHHhhccCCCCCCCCCCC--CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh
Q 018000 95 DRTIEFLSRCQDPNGGYGGGPG--QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC 154 (362)
Q Consensus 95 ~~~i~~l~~~Q~~dGGFgg~pg--~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s 154 (362)
...++||+..|.+|||||..+. ..--+.+|.|||.||..-+.. -.. .++.+.||.+
T Consensus 118 P~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~--~~~--i~rGl~fi~~ 175 (800)
T PLN02592 118 PSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH--PEK--CEKGMSFFRE 175 (800)
T ss_pred HHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc--HHH--HHHHHHHHHH
Confidence 4789999999999999997533 224578899999999775421 012 2456666664
No 64
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=80.00 E-value=24 Score=41.77 Aligned_cols=67 Identities=18% Similarity=0.542 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhc------cCCCCCceecc----CChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCCCCC
Q 018000 46 RKNHVEYLLRGL------QQLGPSFCSLD----ANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYG 112 (362)
Q Consensus 46 r~~H~~yl~~~l------~~l~~~~~~lD----~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dGGFg 112 (362)
+.+-.+||..+. ++-+++|...- +.-.|++=+++-++..-... +++..+.++++|+...|.++|.|-
T Consensus 966 k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~ 1044 (1436)
T KOG1366|consen 966 KRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFK 1044 (1436)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEe
Confidence 344566766654 34678886432 24579999999999888765 467788999999999999999884
No 65
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=79.40 E-value=5.2 Score=39.06 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=62.4
Q ss_pred hHHHHHHHHhhccCCCCCCCCC-CCC-CCchhhhH---HHHHHHHHcC----CCCCCChhh----------HHHHHHHHH
Q 018000 93 LEDRTIEFLSRCQDPNGGYGGG-PGQ-MPHLATTY---AAVNALISLG----GEKSLPSIN----------RSKVYTFLK 153 (362)
Q Consensus 93 ~~~~~i~~l~~~Q~~dGGFgg~-pg~-~shl~~Ty---~Av~sL~ilg----~~~~l~~id----------r~~~~~fL~ 153 (362)
-..+.++||++.|.|+|||... |-. .-|-..|| +.+..|.+|. ....+..+| .++.+++|+
T Consensus 63 A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL 142 (289)
T PF09492_consen 63 AFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCIL 142 (289)
T ss_dssp HHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999863 221 13444555 4555555542 122233332 257899999
Q ss_pred hcCCC----CCceeeccC------------CCcccchHHHHHHHHHHhccCC--H---HHHHHHHHHHHhccCCCCCc
Q 018000 154 CMKDP----SGAFRMHDA------------GEIDVRACYTAISVASILNILD--D---ELLQNVGNYILSCQTYEGGI 210 (362)
Q Consensus 154 s~Q~~----dGgF~~~~~------------ge~D~r~~Y~al~~~~LL~~~~--~---~~~~~~~~yI~scQ~~dGGF 210 (362)
.+|.. -.+|....+ -..-+.+.-++-.+..|+.+.. + ..++.+++|+.++.-.+.-+
T Consensus 143 ~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~ 220 (289)
T PF09492_consen 143 KTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRW 220 (289)
T ss_dssp HHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred HHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCcee
Confidence 99972 234543110 1123334445666677776653 2 34678999998876554433
No 66
>PLN02592 ent-copalyl diphosphate synthase
Probab=75.16 E-value=65 Score=35.98 Aligned_cols=126 Identities=15% Similarity=0.228 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCC-HHhHHHHHHHHhhccCCCC-CCCCCCCCCCch
Q 018000 44 LQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD-ADLEDRTIEFLSRCQDPNG-GYGGGPGQMPHL 121 (362)
Q Consensus 44 l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~-~~~~~~~i~~l~~~Q~~dG-GFgg~pg~~shl 121 (362)
-..++-.+||.+.+++.+++.-+.-+..+.---|.|..|.-||.... +..++.+++.+.++-...| ||++ ....+.+
T Consensus 282 ~~d~~cl~YL~~~~~k~~GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~-~~~~~Dl 360 (800)
T PLN02592 282 TKDENCLEYLNKAVQRFNGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWAR-NSHVHDI 360 (800)
T ss_pred cCchHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCccccc-CCCcCCH
Confidence 34577789998888776665444444455566788889999997532 4567788999988654433 3432 1235788
Q ss_pred hhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCC-CcccchHHHHHH
Q 018000 122 ATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-EIDVRACYTAIS 180 (362)
Q Consensus 122 ~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~g-e~D~r~~Y~al~ 180 (362)
..|.-++..|...|.+ +..+-..+| .. +|.|....++ ..|+++.+..--
T Consensus 361 d~TALaFRLLRqhGy~-----VS~DvF~~F----~~-~g~F~~~~ge~~~Dv~glL~LYe 410 (800)
T PLN02592 361 DDTAMGFRLLRLHGHQ-----VSADVFKHF----EK-GGEFFCFAGQSTQAVTGMFNLYR 410 (800)
T ss_pred HHHHHHHHHHHHcCCC-----CChHHHHhh----cC-CCCccccccccccchHHHHHHHH
Confidence 8999999999999953 222333344 23 7899854432 357766544433
No 67
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=74.91 E-value=3.2 Score=41.16 Aligned_cols=63 Identities=27% Similarity=0.219 Sum_probs=43.4
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceee
Q 018000 94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM 164 (362)
Q Consensus 94 ~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~ 164 (362)
.+++++.|.+.|.++|-||. +.+|--|+++|...+....-..-+..++++++.+-. ++|.|..
T Consensus 217 i~~~~~kIl~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~n 279 (326)
T PF01122_consen 217 IRSLVEKILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQN 279 (326)
T ss_dssp HHHHHHHHHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-S
T ss_pred HHHHHHHHHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCCC
Confidence 45667788999999999984 678999999998887642211245678889998854 4899964
No 68
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.75 E-value=1.3e+02 Score=30.36 Aligned_cols=224 Identities=15% Similarity=0.166 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHhccC--CCCC--cee--ccCChhHHHHHHHHHHHHhCC------CCCHHhHHHHHHHHhhccCCCCCC
Q 018000 44 LQRKNHVEYLLRGLQQ--LGPS--FCS--LDANRPWICYWILHSMALLGE------FVDADLEDRTIEFLSRCQDPNGGY 111 (362)
Q Consensus 44 l~r~~H~~yl~~~l~~--l~~~--~~~--lD~sr~w~~Yw~l~sL~lLg~------~~~~~~~~~~i~~l~~~Q~~dGGF 111 (362)
-.++++.++..+++.. -|.+ |.. -|..+ .++=-+.-++.|+-. ++++..++++++||.+.....-.
T Consensus 73 ~~~~~~~~~~~~gi~~GtdP~spdyw~~~~~~dQ-~~VEaa~la~aL~~a~~~lW~~L~~~~k~~l~~wL~~~~~~~~~- 150 (361)
T PF10022_consen 73 KLREKLRELYRKGIANGTDPKSPDYWGFIGDYDQ-RLVEAASLALALLRAPEWLWDPLDEEEKENLVDWLKQIRGIKPP- 150 (361)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCccccCCcccchh-hHhHHHHHHHHHHHCHHHHHhhCCHHHHHHHHHHHHhcCcCCCc-
Confidence 5566777777777642 2322 221 12211 233233333444332 48899999999999977654322
Q ss_pred CCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHH-------
Q 018000 112 GGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASI------- 184 (362)
Q Consensus 112 gg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~L------- 184 (362)
..-.+...-..-..|..+|.+ ++....+..++-+.+.-..||=|+--+....| -|..+++-.+
T Consensus 151 -----~nNW~lF~v~v~~~L~~~G~~--~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~D---YYns~aih~y~l~~~~~ 220 (361)
T PF10022_consen 151 -----DNNWLLFRVMVEAFLKKVGEE--YDEERIDYDLERIEEWYLGDGWYSDGPEFQFD---YYNSWAIHPYLLLYARL 220 (361)
T ss_pred -----cchhHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHHHhccCCccccCCccCCc---chHHHHHHHHHHHHHHH
Confidence 223344444455566667754 44433456666777777777755544555566 6777766432
Q ss_pred hccCC----HHHHHHHHHHHHhcc---CCCCCcCCCCCCCCchhHhHHHHHH---HHHhccC--Cccc-------HHHHH
Q 018000 185 LNILD----DELLQNVGNYILSCQ---TYEGGIAGEPGSEAHGGYTFCGLAA---MILINEA--DRLD-------LDALI 245 (362)
Q Consensus 185 L~~~~----~~~~~~~~~yI~scQ---~~dGGFg~~pg~esh~~~TfcALaa---L~llg~~--~~~d-------~~~l~ 245 (362)
.+... ....+++.+|..... ..||.+- |.+.| ..|=|.+.+. +++++.. +.++ +.+.+
T Consensus 221 ~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~--~~GRS-ltYRfA~~a~~~~~a~~~~lp~~~~~~g~vR~~l~~~l 297 (361)
T PF10022_consen 221 MGDEDPERAARYRQRAQRFAEDYERMFSPDGAAP--PFGRS-LTYRFAAFAFLAAAALAGVLPEPLISPGQVRRALSRVL 297 (361)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcC--Ccccc-HHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHHHHH
Confidence 22222 134567777776643 4566543 33322 3444444444 4445541 1112 23455
Q ss_pred HHHHhC-CCC--C----CcccCCCC----CCCcccccchHHHHHHHHh
Q 018000 246 GWVVFR-QGV--E----GGFQGRTN----KLVDGCYSFWQGGVFALLR 282 (362)
Q Consensus 246 ~WL~~r-Q~~--e----GGF~GR~n----KlvD~CYsfW~~a~l~ll~ 282 (362)
+|..++ ..+ + =||.|.-- ...-.--.||+.-+|-.|.
T Consensus 298 r~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~ 345 (361)
T PF10022_consen 298 RWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLG 345 (361)
T ss_pred HHHHhCCCCCCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhc
Confidence 666555 442 2 36766421 2233445599998885554
No 69
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.86 E-value=84 Score=34.25 Aligned_cols=160 Identities=25% Similarity=0.276 Sum_probs=0.0
Q ss_pred CCCCCHHhHHHHHHHHhhccCC-CCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceee
Q 018000 86 GEFVDADLEDRTIEFLSRCQDP-NGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM 164 (362)
Q Consensus 86 g~~~~~~~~~~~i~~l~~~Q~~-dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~ 164 (362)
+..++++..++++..|.+...+ .||||+.|--++....-+..-..+. -+ +...++.+.+-|..+-. ||-.-
T Consensus 177 ~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~~~l~~Llr~~~~-~~-----d~~~~~~~~~TL~~ma~--GGIyD 248 (667)
T COG1331 177 GEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPPHLLLFLLRYSLR-TG-----DERALDMVLRTLDAMAR--GGIYD 248 (667)
T ss_pred cccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCChHHHHHHHHHHHh-hC-----CHHHHHHHHHHHHHHHc--cCCcc
Q ss_pred ccCCC-----cccc----------------hHHHHHHHHHHhccCCHHHHHHHHHHHHh-ccCCCCCc-----CCCCCCC
Q 018000 165 HDAGE-----IDVR----------------ACYTAISVASILNILDDELLQNVGNYILS-CQTYEGGI-----AGEPGSE 217 (362)
Q Consensus 165 ~~~ge-----~D~r----------------~~Y~al~~~~LL~~~~~~~~~~~~~yI~s-cQ~~dGGF-----g~~pg~e 217 (362)
|.+|. +|-. -..++-+-...=+..=....+++++||.+ ...++||| +.++| +
T Consensus 249 hlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~ggFyss~DAD~~g-~ 327 (667)
T COG1331 249 HLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPEGGFYSSLDADSDG-E 327 (667)
T ss_pred ccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCCceeecccccCcc-c
Q ss_pred CchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCC--CCCcccCCC
Q 018000 218 AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQG--VEGGFQGRT 262 (362)
Q Consensus 218 sh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~--~eGGF~GR~ 262 (362)
--..||+----.-.+|| ....+....-. .+|.|.||.
T Consensus 328 EG~~Y~Ws~eEi~~~Lg--------~d~~~~~~~f~vs~~GnfeGrn 366 (667)
T COG1331 328 EGKYYTWSVEELKEVLG--------EDAELACKYFDVSEEGNFEGRN 366 (667)
T ss_pred CCCeeecCHHHHHHHhc--------ccHHHHHHHcccCCCCCcCCce
No 70
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=64.98 E-value=7.7 Score=37.87 Aligned_cols=114 Identities=23% Similarity=0.147 Sum_probs=55.8
Q ss_pred CcccchHHHHHHHHHHhccC--C---HHHHHHHHHHHHhccCCCCCcCCC-CCC-CCchhHhH---HHHHHHHHhc----
Q 018000 169 EIDVRACYTAISVASILNIL--D---DELLQNVGNYILSCQTYEGGIAGE-PGS-EAHGGYTF---CGLAAMILIN---- 234 (362)
Q Consensus 169 e~D~r~~Y~al~~~~LL~~~--~---~~~~~~~~~yI~scQ~~dGGFg~~-pg~-esh~~~Tf---cALaaL~llg---- 234 (362)
..|=..|+..+.-+.-+-.. + ...+.+.++||++-|.++|||-.. |.. .-|...|| ..+-.|.+|.
T Consensus 35 TiDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~ 114 (289)
T PF09492_consen 35 TIDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAE 114 (289)
T ss_dssp E-GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHC
T ss_pred cccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHh
Confidence 34555677766544322111 1 145789999999999999999764 321 12333344 2333444442
Q ss_pred -cCCc------------ccHHHHHHHHHhCCC-CC---Cccc------------CCCCCCCcccccchHHHHHHHHh
Q 018000 235 -EADR------------LDLDALIGWVVFRQG-VE---GGFQ------------GRTNKLVDGCYSFWQGGVFALLR 282 (362)
Q Consensus 235 -~~~~------------~d~~~l~~WL~~rQ~-~e---GGF~------------GR~nKlvD~CYsfW~~a~l~ll~ 282 (362)
..+. --+++++.+|+..|. .+ .+|. +|.--++-.|-+=-++-+..|+.
T Consensus 115 ~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~ 191 (289)
T PF09492_consen 115 GKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMS 191 (289)
T ss_dssp T-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCT
T ss_pred hcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhc
Confidence 1111 136889999999998 22 2332 24445566666555555554443
No 71
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=64.85 E-value=1.1e+02 Score=33.39 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=79.4
Q ss_pred CChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHH
Q 018000 69 ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKV 148 (362)
Q Consensus 69 ~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~ 148 (362)
.+-..-+|+++.++..||.+++..+.++++.-|...+..| ..+.++-.|+.+++.|+..-.+..+ .+++
T Consensus 121 ~s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kd----------ds~~s~g~al~~aa~L~~~a~l~~~-~~~i 189 (636)
T PF05817_consen 121 DSSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKD----------DSLLSLGYALHAAAQLSKQADLADI-VERI 189 (636)
T ss_pred CccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHhhccchhhhHH-HHHH
Confidence 3445559999999999999886667788888888777764 4456666788888888743222110 1222
Q ss_pred HHHHHhcCCCCCceeeccCCCcccch-HHHHHHHHHHhcc---CCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhH
Q 018000 149 YTFLKCMKDPSGAFRMHDAGEIDVRA-CYTAISVASILNI---LDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTF 224 (362)
Q Consensus 149 ~~fL~s~Q~~dGgF~~~~~ge~D~r~-~Y~al~~~~LL~~---~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~Tf 224 (362)
-+=+.+.-.-||..--..+|-.-+-. ...+...+.-.+. ++.+-+-+..+|+++.++ ++...+..+-.
T Consensus 190 eD~v~qaDEv~~~~LqFeggLs~TA~vv~g~~~la~~~~k~~~i~~dQivklanylLsrr~--------v~s~k~a~~l~ 261 (636)
T PF05817_consen 190 EDAVAQADEVDGKYLQFEGGLSTTALVVRGIYKLADAVGKKPPIKEDQIVKLANYLLSRRS--------VQSPKDAFNLL 261 (636)
T ss_pred HHHHHhhhhhcccceeecCCchhhHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhcCCC--------CCCHHHHHHHH
Confidence 23333333335554444444322210 1111111122232 234556788999998764 22333444555
Q ss_pred HHHHHHH
Q 018000 225 CGLAAMI 231 (362)
Q Consensus 225 cALaaL~ 231 (362)
.|+.+|+
T Consensus 262 ~al~~L~ 268 (636)
T PF05817_consen 262 EALKSLS 268 (636)
T ss_pred HHHHHHh
Confidence 5555544
No 72
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.76 E-value=2.3e+02 Score=28.55 Aligned_cols=187 Identities=20% Similarity=0.236 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCC----CCC
Q 018000 44 LQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPG----QMP 119 (362)
Q Consensus 44 l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg----~~s 119 (362)
-.|++.+++|+..-..- .-+.|=.||--.+-..|.-+|.+.+.+..+..++.+.++.--||=|+-|+. .+.
T Consensus 132 ~~k~~l~~wL~~~~~~~-----~~~nNW~lF~v~v~~~L~~~G~~~d~~~i~~~l~~~e~~Y~GdGWY~DG~~~~~DYYn 206 (361)
T PF10022_consen 132 EEKENLVDWLKQIRGIK-----PPDNNWLLFRVMVEAFLKKVGEEYDEERIDYDLERIEEWYLGDGWYSDGPEFQFDYYN 206 (361)
T ss_pred HHHHHHHHHHHhcCcCC-----CccchhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhccCCccccCCccCCcchH
Confidence 56778888997644322 236676666666677788889988888888999999999888876665653 233
Q ss_pred chhhhHHHHHHHHHcCCCCC-CChhhHHHHHHHHHh---cCCCCCceeeccCCCcccc-hHHHHHHHHHHhccC-----C
Q 018000 120 HLATTYAAVNALISLGGEKS-LPSINRSKVYTFLKC---MKDPSGAFRMHDAGEIDVR-ACYTAISVASILNIL-----D 189 (362)
Q Consensus 120 hl~~Ty~Av~sL~ilg~~~~-l~~idr~~~~~fL~s---~Q~~dGgF~~~~~ge~D~r-~~Y~al~~~~LL~~~-----~ 189 (362)
--+.=++.+..+.+.++... ....-++++.+|... +-.+||++-.--.. .-=| ++...++.+.+.+.+ +
T Consensus 207 s~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~~~GRS-ltYRfA~~a~~~~~a~~~~lp~~~~~ 285 (361)
T PF10022_consen 207 SWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAPPFGRS-LTYRFAAFAFLAAAALAGVLPEPLIS 285 (361)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCcccc-HHHHHHHHHHHHHHHHcCCCCccCCC
Confidence 34444555556666665321 111124556666665 44689987643211 0011 122334455555552 2
Q ss_pred HH----HHHHHHHHHHhc-cCC--CC----CcCCC-C-CCC--CchhHhHHHHHHHHHhccC
Q 018000 190 DE----LLQNVGNYILSC-QTY--EG----GIAGE-P-GSE--AHGGYTFCGLAAMILINEA 236 (362)
Q Consensus 190 ~~----~~~~~~~yI~sc-Q~~--dG----GFg~~-p-g~e--sh~~~TfcALaaL~llg~~ 236 (362)
.- ...++.+|..+- .+. || ||.+. + -.| +-.+.-|+|..++..|+-+
T Consensus 286 ~g~vR~~l~~~lr~~~~~p~~f~~~G~LtiG~~~~~~~m~e~Y~~~gSpYwa~k~Fl~L~Lp 347 (361)
T PF10022_consen 286 PGQVRRALSRVLRWWLEQPGIFDEDGWLTIGFYGPNPPMAENYNSPGSPYWASKAFLPLGLP 347 (361)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCcCCCcCCCChhhhhccCCCCCHHHHHHHHHHhcCC
Confidence 22 233455555544 343 34 44432 1 112 4567778888888777654
No 73
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=45.73 E-value=3e+02 Score=26.91 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhc-c-CCCCCCCCCC---C----CCCchhhhHHHHHHHHH----cCCCCCCChhhHHHHHHHHHh-cCCC
Q 018000 93 LEDRTIEFLSRC-Q-DPNGGYGGGP---G----QMPHLATTYAAVNALIS----LGGEKSLPSINRSKVYTFLKC-MKDP 158 (362)
Q Consensus 93 ~~~~~i~~l~~~-Q-~~dGGFgg~p---g----~~shl~~Ty~Av~sL~i----lg~~~~l~~idr~~~~~fL~s-~Q~~ 158 (362)
..+.++.|.... . .+.|||...- | ..-++..+-..|-+++. .+.++.+.. -+++++||.+ +..+
T Consensus 15 ~~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~--A~~~~~fl~~~~~d~ 92 (384)
T cd00249 15 LLEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEA--AEHGLEYLDRHGRDP 92 (384)
T ss_pred HHHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHH--HHHHHHHHHHhCcCC
Confidence 346778887663 2 3468886531 1 12333334444444432 333322222 2578899998 5555
Q ss_pred C-Cceeecc--CCC-cccch-HHH----HHHHHHHhccC-CH---HHHHHHHHHHHhcc-CCCCCc
Q 018000 159 S-GAFRMHD--AGE-IDVRA-CYT----AISVASILNIL-DD---ELLQNVGNYILSCQ-TYEGGI 210 (362)
Q Consensus 159 d-GgF~~~~--~ge-~D~r~-~Y~----al~~~~LL~~~-~~---~~~~~~~~yI~scQ-~~dGGF 210 (362)
+ |+|.-.. .|. .|... .|. +.+.+.+.... ++ ...+.+.++|.+-. ..+||+
T Consensus 93 ~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 93 DHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred CCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 6 8886532 232 22222 332 22222332222 22 34566777776643 234654
No 74
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=42.69 E-value=3.3e+02 Score=26.46 Aligned_cols=66 Identities=9% Similarity=0.060 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhccCCCCCcCCC---CC--CCCchhHhHHHHHHHHH---hccCCc----ccHHHHHHHHHhC-CCCCCc
Q 018000 192 LLQNVGNYILSCQTYEGGIAGE---PG--SEAHGGYTFCGLAAMIL---INEADR----LDLDALIGWVVFR-QGVEGG 257 (362)
Q Consensus 192 ~~~~~~~yI~scQ~~dGGFg~~---pg--~esh~~~TfcALaaL~l---lg~~~~----~d~~~l~~WL~~r-Q~~eGG 257 (362)
..++.+++|.+.|..+|.|-.. |. ...+..-|.....+|.. .+..+. ...+++++.|.++ -.++|-
T Consensus 216 ~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 216 IAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp HHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred HHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 3567788889999999998754 33 33344444444444422 222211 2357889999988 445554
No 75
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=42.32 E-value=4.9e+02 Score=28.39 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=54.8
Q ss_pred CChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCC--------------CCC-CCC-------------CCCCCc
Q 018000 69 ANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPN--------------GGY-GGG-------------PGQMPH 120 (362)
Q Consensus 69 ~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~d--------------GGF-gg~-------------pg~~sh 120 (362)
.+..--+||++.++.+||.++++ .+.++.++.+--... +-. +.. -...+.
T Consensus 46 ~~dLes~yyav~glk~Lg~~~~~--~~~~C~~~~~~~~~s~~~~e~lfya~~~~~~L~C~~~~~~~~~~~l~~~l~~~s~ 123 (636)
T PF05817_consen 46 SSDLESAYYAVLGLKLLGIKVPD--SKAACKFLKKALDESSNDLESLFYAASASKALKCKVSVSNEVKSLLKAALSEDSS 123 (636)
T ss_pred cccHHHHHHHHhhHHHhCCCCCC--hhhHHHHHHHhhccccchHHHHHHHHHHHhhcCCcccCcHHHHHHHHHHhcCCcc
Confidence 34455689999999999987653 445555544321111 000 111 112467
Q ss_pred hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCc
Q 018000 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGA 161 (362)
Q Consensus 121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGg 161 (362)
+..-|+||.+|..+|-+ .+..|.+++++-|...+.+|.+
T Consensus 124 ~~~iy~av~sl~~lg~~--v~~~~~~~v~k~l~~~l~kdds 162 (636)
T PF05817_consen 124 VSQIYYAVSSLKLLGLK--VDEADSDEVVKALQASLKKDDS 162 (636)
T ss_pred HHHHHHHHHHHHHcCCC--cccccHHHHHHHHHHHhccccc
Confidence 77789999999999843 3334777888888877766544
No 76
>PLN02279 ent-kaur-16-ene synthase
Probab=42.14 E-value=3.9e+02 Score=29.89 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCC-HHhHHHHHHHHhhccCCCCCCCCCCCCCCchhh
Q 018000 45 QRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD-ADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLAT 123 (362)
Q Consensus 45 ~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~-~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~ 123 (362)
.-++-.+||.+.+++.+|+.-+.-+..+.-.-|.+..|.-||.+.. +..++.+++.+.++... | .++....+..
T Consensus 243 ~~~~~~~yL~~~~~~~~g~vP~~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~-~----~~~~~~Dl~~ 317 (784)
T PLN02279 243 QNAGCLRYLRSLLQKFGNAVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQ-G----EEEIFLDLAT 317 (784)
T ss_pred CChHHHHHHHHHHHhcCCCCCCCCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcc-c----ccCCCCCHHH
Confidence 4577789998888777666554444455667788999999997543 44677888888765542 2 2334578888
Q ss_pred hHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCC-CcccchHHHHHHHHHHhccCCHHHHHHHH
Q 018000 124 TYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-EIDVRACYTAISVASILNILDDELLQNVG 197 (362)
Q Consensus 124 Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~g-e~D~r~~Y~al~~~~LL~~~~~~~~~~~~ 197 (362)
|.-+.-.|..-|.+ .+ .+-..+| + .++ |....++ ..|+++.+..--+..+. ...+...+++.
T Consensus 318 tAl~FRLLR~hGy~--VS---~dvf~~F----~-~~~-F~~~l~~~~~dv~gmL~LY~AS~l~-~~gE~iLdeA~ 380 (784)
T PLN02279 318 CALAFRILRLNGYD--VS---SDPLKQF----A-EDH-FSDSLGGYLKDTGAVLELFRASQIS-YPDESLLEKQN 380 (784)
T ss_pred HHHHHHHHHHcCCC--CC---hhHHhhc----C-CCc-ccchhcccchhhHHHHHHHHHHhcC-CCccHHHHHHH
Confidence 88888899988853 11 2223333 2 244 8766543 45887777666555543 33333334433
No 77
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=34.55 E-value=16 Score=26.79 Aligned_cols=7 Identities=57% Similarity=1.407 Sum_probs=6.2
Q ss_pred HHHHHcc
Q 018000 351 RYLLLCS 357 (362)
Q Consensus 351 ~yil~c~ 357 (362)
-|||+||
T Consensus 47 aYilLCC 53 (61)
T PF15221_consen 47 AYILLCC 53 (61)
T ss_pred HHHHHHH
Confidence 4999999
No 78
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=33.57 E-value=1.1e+02 Score=32.26 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhccCCCCCcCCCCCC-----------CCchhHhH----HHHHH-HHHhccCCccc-HHHHHHHH
Q 018000 192 LLQNVGNYILSCQTYEGGIAGEPGS-----------EAHGGYTF----CGLAA-MILINEADRLD-LDALIGWV 248 (362)
Q Consensus 192 ~~~~~~~yI~scQ~~dGGFg~~pg~-----------esh~~~Tf----cALaa-L~llg~~~~~d-~~~l~~WL 248 (362)
-++..++.|.+||..||=++..+.. +.|-.|+. .|+.+ ....|....++ +.++.+|+
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~ 157 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWV 157 (520)
T ss_pred HHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 3567889999999998854433221 23444544 23332 33456555566 57899999
No 79
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=27.92 E-value=53 Score=25.87 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=25.0
Q ss_pred HHHhccCCHHHHHHHHHHHHhccCCCCCcCCC
Q 018000 182 ASILNILDDELLQNVGNYILSCQTYEGGIAGE 213 (362)
Q Consensus 182 ~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~ 213 (362)
-..||++..+.++.+++||++.-+..-||-..
T Consensus 47 PkFLn~LGteIiEnAVefiLrSMtR~tgF~E~ 78 (88)
T PF15144_consen 47 PKFLNLLGTEIIENAVEFILRSMTRSTGFMEF 78 (88)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhhcccCceec
Confidence 34566666788999999999988887787643
No 80
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=26.26 E-value=55 Score=25.80 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=23.1
Q ss_pred HHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCC
Q 018000 82 MALLGEFVDADLEDRTIEFLSRCQDPNGGYGGG 114 (362)
Q Consensus 82 L~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~ 114 (362)
|.+||. +.++.+++||++..++.-||..-
T Consensus 50 Ln~LGt----eIiEnAVefiLrSMtR~tgF~E~ 78 (88)
T PF15144_consen 50 LNLLGT----EIIENAVEFILRSMTRSTGFMEF 78 (88)
T ss_pred HHHhhH----HHHHHHHHHHHHHhhcccCceec
Confidence 456664 57899999999999998898753
No 81
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=23.38 E-value=1.4e+02 Score=27.95 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=52.6
Q ss_pred HHHHHHHHcCCCCCCChhhHHHHHHHHHhcCC-----CCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH-
Q 018000 126 AAVNALISLGGEKSLPSINRSKVYTFLKCMKD-----PSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY- 199 (362)
Q Consensus 126 ~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~-----~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y- 199 (362)
..+.++.++.....+..-+++.+.+|+...-. +.|.........-++......++++.+++ +....+.+++.
T Consensus 118 ~~~~a~~~l~~~~~~~~~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~nNh~~~~~~~~~~~ai~l~--d~~~~~~a~~~~ 195 (272)
T PF05426_consen 118 RWLDAAELLRDYPGWTEADRKRFENWFREYLEWLLTSRYGRDERSAKNNHGTWANAAVMAIAIFLD--DDELYDRAVNRF 195 (272)
T ss_dssp HHHHHHHCTTTSSSS-HHHHHHHHHHHHHHHHHHHCSHHHCCCCT-SSHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhchhhhccCCccCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 45556666644445777777888888876432 11111111111112212222222222332 34566666665
Q ss_pred HHh----ccCCCCCcCCCCCC-CCchhHhHHHHHHHHHhc
Q 018000 200 ILS----CQTYEGGIAGEPGS-EAHGGYTFCGLAAMILIN 234 (362)
Q Consensus 200 I~s----cQ~~dGGFg~~pg~-esh~~~TfcALaaL~llg 234 (362)
... .-.+||.+-..... +-...|+..+|.+|.++-
T Consensus 196 ~~~~~~~qi~~dG~~p~e~~R~~~~~~Y~~~~L~~l~~~a 235 (272)
T PF05426_consen 196 KKGIINKQIDPDGSQPDESGRGERSQHYHNFALQALLTLA 235 (272)
T ss_dssp HHHCHHCCC-TTS-BCCHHCSGCCHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhccccccccccccCCCCCCchhHHHHHHHHHHHH
Confidence 332 23457765443333 556788889999987763
No 82
>PRK13619 psbV cytochrome c-550; Provisional
Probab=20.74 E-value=1.6e+02 Score=26.24 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHH----HHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCCC
Q 018000 44 LQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILH----SMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGG 114 (362)
Q Consensus 44 l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~----sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg~ 114 (362)
=+.+..+.|++. |.+|-..|+ |+.++ +.+++-. .+++++...+..||+.--...|+|||+
T Consensus 92 dnV~aLVdymk~-----PtsyDG~~~------~a~~hpsi~~~di~P~mr~LtdedL~~iAg~IL~~pk~~~~WGGg 157 (160)
T PRK13619 92 DNVLALVDYLKH-----PTSYDGEDD------YSELHPNVSRPDIFPELRNFTEDDLYDVAGYMLVAPKLDERWGGT 157 (160)
T ss_pred ccHHHHHHHHhC-----Ccccccchh------hhhhcccccccccccccCCCCHHHHHHHHHHHHhccccccccCCc
Confidence 334445666654 777766554 33333 2333211 377889999999998876667899876
Done!