Query 018000
Match_columns 362
No_of_seqs 307 out of 1529
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:18:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7a_B Farnesyltransferase bet 100.0 1.3E-81 4.4E-86 639.1 27.7 284 3-286 17-342 (520)
2 3dra_B Geranylgeranyltransfera 100.0 1.5E-73 5.3E-78 566.5 21.6 261 43-360 3-332 (390)
3 2h6f_B Protein farnesyltransfe 100.0 7E-72 2.4E-76 563.7 26.4 311 2-360 34-346 (437)
4 1n4q_B Geranyltransferase type 100.0 3.6E-68 1.2E-72 527.7 20.0 237 42-283 18-285 (377)
5 3dss_B Geranylgeranyl transfer 100.0 1.7E-64 5.9E-69 494.1 24.0 238 42-283 16-254 (331)
6 3dss_B Geranylgeranyl transfer 100.0 7.8E-40 2.7E-44 319.8 22.5 236 43-283 65-303 (331)
7 2h6f_B Protein farnesyltransfe 100.0 1.1E-32 3.6E-37 278.1 18.5 237 44-284 121-376 (437)
8 1n4q_B Geranyltransferase type 100.0 1E-31 3.5E-36 266.3 22.0 235 44-283 67-334 (377)
9 3dra_B Geranylgeranyltransfera 100.0 4.7E-31 1.6E-35 261.9 20.2 240 43-283 52-362 (390)
10 3q7a_B Farnesyltransferase bet 100.0 2.7E-29 9.3E-34 255.4 19.5 239 43-285 108-425 (520)
11 2sqc_A Squalene-hopene cyclase 99.9 7E-22 2.4E-26 207.7 23.2 223 45-273 332-609 (631)
12 1w6k_A Lanosterol synthase; cy 99.8 2.6E-19 8.9E-24 191.0 23.2 224 46-270 411-701 (732)
13 1w6k_A Lanosterol synthase; cy 99.7 3.7E-17 1.3E-21 174.4 19.0 236 46-282 358-663 (732)
14 2sqc_A Squalene-hopene cyclase 99.7 1.3E-16 4.3E-21 167.8 20.5 237 46-283 283-568 (631)
15 2wy7_A Complement C3D fragment 99.6 1.4E-14 4.7E-19 139.4 17.7 203 57-261 10-276 (310)
16 1qqf_A Protein (complement C3D 99.6 4.7E-14 1.6E-18 133.3 19.3 166 94-261 40-260 (277)
17 1hzf_A Complement factor C4A; 99.3 8.2E-11 2.8E-15 115.8 16.0 201 57-260 47-345 (367)
18 2pn5_A TEP1R, thioester-contai 99.2 4.6E-10 1.6E-14 126.7 17.9 201 57-260 831-1087(1325)
19 1qqf_A Protein (complement C3D 99.1 1.2E-09 4.2E-14 102.9 14.8 178 46-232 33-272 (277)
20 2wy7_A Complement C3D fragment 99.0 3.8E-09 1.3E-13 101.3 14.5 167 58-233 67-289 (310)
21 2hr0_B Complement C3 alpha' ch 98.9 2.6E-08 8.9E-13 108.7 18.4 201 57-260 255-520 (915)
22 4acq_A Alpha-2-macroglobulin; 98.8 4.7E-08 1.6E-12 111.2 16.6 218 57-281 942-1244(1451)
23 1hzf_A Complement factor C4A; 98.7 3.7E-07 1.3E-11 89.6 16.3 168 57-233 103-359 (367)
24 4fxk_B Complement C4-A alpha c 98.3 3.8E-05 1.3E-09 82.0 21.2 106 59-164 326-440 (767)
25 1r76_A Pectate lyase; A-helica 98.3 2.3E-06 7.8E-11 84.9 9.7 163 93-259 82-334 (408)
26 2b39_A C3; thioester, immune d 98.2 4.2E-05 1.5E-09 88.2 19.2 199 57-260 1002-1267(1661)
27 2hr0_B Complement C3 alpha' ch 98.1 3.1E-05 1.1E-09 84.5 14.2 167 58-233 312-534 (915)
28 2pn5_A TEP1R, thioester-contai 98.1 2.8E-05 9.5E-10 87.8 14.1 179 46-233 867-1101(1325)
29 1r76_A Pectate lyase; A-helica 97.9 3.4E-05 1.2E-09 76.5 9.7 118 93-211 176-334 (408)
30 2bb6_A TCII, TC II, transcobal 97.9 1.4E-05 4.8E-10 79.6 6.3 115 126-259 141-269 (414)
31 3prx_B Cobra venom factor; imm 97.8 2.9E-06 9.8E-11 97.6 0.0 211 60-280 989-1265(1642)
32 2bb6_A TCII, TC II, transcobal 97.8 0.00015 5E-09 72.3 12.2 133 75-231 139-282 (414)
33 1gxm_A Pectate lyase; mechanis 97.8 5.3E-06 1.8E-10 80.2 1.7 154 97-253 36-251 (332)
34 4acq_A Alpha-2-macroglobulin; 97.8 0.00026 8.9E-09 80.8 15.1 163 58-232 996-1240(1451)
35 3cu7_A Complement C5; Mg domai 97.6 0.00046 1.6E-08 79.7 14.9 96 69-164 1012-1120(1676)
36 2pmv_A Gastric intrinsic facto 97.5 0.00012 4.1E-09 72.5 6.9 110 127-259 120-245 (399)
37 1gxm_A Pectate lyase; mechanis 97.5 6.9E-05 2.4E-09 72.4 4.8 124 147-270 35-202 (332)
38 4fxk_B Complement C4-A alpha c 96.6 0.015 5E-07 62.0 12.8 135 117-251 335-503 (767)
39 2b39_A C3; thioester, immune d 96.3 0.025 8.6E-07 65.3 13.3 135 117-251 1013-1178(1661)
40 2pmv_A Gastric intrinsic facto 95.7 0.013 4.4E-07 58.0 5.9 62 93-163 184-245 (399)
41 3prx_B Cobra venom factor; imm 95.2 0.0032 1.1E-07 72.6 0.0 137 115-251 995-1162(1642)
42 3cu7_A Complement C5; Mg domai 95.0 0.043 1.5E-06 63.5 8.3 83 152-234 1056-1156(1676)
43 3pya_A ENT-copalyl diphosphate 89.6 0.42 1.4E-05 50.8 6.2 56 95-154 53-110 (727)
44 3p5p_A Taxadiene synthase; cla 89.6 0.42 1.4E-05 51.0 6.3 57 94-154 55-113 (764)
45 3s9v_A Abietadiene synthase, c 89.3 0.45 1.5E-05 51.0 6.2 56 95-154 77-134 (785)
46 3sdr_A Alpha-bisabolene syntha 89.1 0.48 1.6E-05 51.0 6.3 56 95-154 104-161 (817)
47 3s9v_A Abietadiene synthase, c 78.2 22 0.00074 38.0 13.1 143 46-199 244-389 (785)
48 3p5p_A Taxadiene synthase; cla 77.3 25 0.00087 37.4 13.3 143 46-199 220-365 (764)
49 3sdr_A Alpha-bisabolene syntha 63.7 47 0.0016 35.6 11.7 143 46-199 272-417 (817)
50 3k11_A Putative glycosyl hydro 59.7 1.1E+02 0.0039 30.2 12.9 166 93-258 169-371 (445)
51 3ren_A Glycosyl hydrolase, fam 49.0 49 0.0017 31.8 8.0 156 69-231 166-346 (350)
52 3pya_A ENT-copalyl diphosphate 47.1 2.6E+02 0.0089 29.5 13.8 142 46-199 219-363 (727)
53 1fp3_A N-acyl-D-glucosamine 2- 31.1 1.1E+02 0.0037 29.0 7.3 114 94-211 19-167 (402)
54 2gz6_A N-acetyl-D-glucosamine 30.3 2.3E+02 0.008 26.2 9.6 110 93-204 16-151 (388)
55 3gt5_A N-acetylglucosamine 2-e 25.5 1.4E+02 0.0048 28.5 7.1 114 146-259 16-157 (402)
56 3k11_A Putative glycosyl hydro 24.6 3.9E+02 0.013 26.2 10.2 163 48-212 172-373 (445)
57 3pmm_A Putative cytoplasmic pr 21.9 2.9E+02 0.01 26.3 8.6 68 146-213 266-342 (382)
No 1
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=1.3e-81 Score=639.08 Aligned_cols=284 Identities=39% Similarity=0.729 Sum_probs=261.5
Q ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHhhhcC--CCch-hhhhhhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHH
Q 018000 3 PDTEPRGTVTQREQSMVLNDVNMLYHIYATV--PPIA-QTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWIL 79 (362)
Q Consensus 3 ~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~--~~~~-~~~~~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l 79 (362)
.++|+++|.||++|.+||+.|.++|+..... ..+. ....+.|.|++|++||+++|..||.+|+++|++|+|++||+|
T Consensus 17 ~~~d~~~T~Ts~~Q~~te~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~~Hi~yl~~~L~~LP~~y~~~Dasr~wl~Yw~l 96 (520)
T 3q7a_B 17 LPSNSRPSATLDEQAETEDLISQLFDLTADPNALVSEHGKRYSGLRKQEHTQFLASSFFQLPGKFVSLDASRPWLVFWTV 96 (520)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHHHHHHBCCTTCSSCCTTSBCCCCCHHHHHHHHHHHHSCBCGGGGGGGGGHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHhhhCChhhhhcccchHHHHHHHH
Confidence 5789999999999999999999999863211 0011 112457999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCC--CCCCchhhhHHHHHHHHHcCCC---CCCChhh--HHHHHHHH
Q 018000 80 HSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGP--GQMPHLATTYAAVNALISLGGE---KSLPSIN--RSKVYTFL 152 (362)
Q Consensus 80 ~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~p--g~~shl~~Ty~Av~sL~ilg~~---~~l~~id--r~~~~~fL 152 (362)
++|+|||.+++++.++++|+||++||+++|||+++| ++.+|+++||+||++|++++.. ++++.|| |+++++||
T Consensus 97 ~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL 176 (520)
T 3q7a_B 97 HSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFF 176 (520)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHH
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHH
Confidence 999999988988999999999999999999999999 9999999999999999999975 3577899 99999999
Q ss_pred HhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCC--------------------
Q 018000 153 KCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAG-------------------- 212 (362)
Q Consensus 153 ~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~-------------------- 212 (362)
.++|++||||.++.+|+.|+|+||||++++.+|+.++.++++++++||++||++|||||.
T Consensus 177 ~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp 256 (520)
T 3q7a_B 177 MRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEP 256 (520)
T ss_dssp HHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CC
T ss_pred HHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCcccccccccccccccccccc
Confidence 999999999999988999999999999999999999999999999999999999999999
Q ss_pred ---CCCCCCchhHhHHHHHHHHHhccC------CcccHHHHHHHHHhCCC---CCCcccCCCCCCCcccccchHHHHHHH
Q 018000 213 ---EPGSEAHGGYTFCGLAAMILINEA------DRLDLDALIGWVVFRQG---VEGGFQGRTNKLVDGCYSFWQGGVFAL 280 (362)
Q Consensus 213 ---~pg~esh~~~TfcALaaL~llg~~------~~~d~~~l~~WL~~rQ~---~eGGF~GR~nKlvD~CYsfW~~a~l~l 280 (362)
.|+.|||++|||||||+|+||++. +.+|++++++||++||. .+|||+||+||+||+|||||++++|+|
T Consensus 257 ~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~i 336 (520)
T 3q7a_B 257 SCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPV 336 (520)
T ss_dssp SEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHH
T ss_pred ccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHH
Confidence 789999999999999999999996 46899999999999998 359999999999999999999999999
Q ss_pred Hhhhhh
Q 018000 281 LRRFHS 286 (362)
Q Consensus 281 l~~~~~ 286 (362)
|+++..
T Consensus 337 L~~~~~ 342 (520)
T 3q7a_B 337 AEELVR 342 (520)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999843
No 2
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=1.5e-73 Score=566.47 Aligned_cols=261 Identities=29% Similarity=0.412 Sum_probs=240.4
Q ss_pred hhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCC-CCHHhHHHHHHHHhhccCCC----CCCCCCC--
Q 018000 43 ELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQDPN----GGYGGGP-- 115 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~-~~~~~~~~~i~~l~~~Q~~d----GGFgg~p-- 115 (362)
.|+|+||++||+++|+.||.+|+++|++|||++||+|++|+|||.+ +.++.++++++||.+||.++ |||+++|
T Consensus 3 ~l~~~kHiky~~~~L~~Lp~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~ 82 (390)
T 3dra_B 3 QLLINKHEKFFNRCLIGLPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYF 82 (390)
T ss_dssp CCCHHHHHHHHHHHHHCCCGGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGG
T ss_pred cccHHHHHHHHHHHHHhCCcchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCccC
Confidence 5899999999999999999999999999999999999999999985 36778999999999998764 9999985
Q ss_pred ---C---CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCC---C-CCceeecc-----------CCCcccch
Q 018000 116 ---G---QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKD---P-SGAFRMHD-----------AGEIDVRA 174 (362)
Q Consensus 116 ---g---~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~---~-dGgF~~~~-----------~ge~D~r~ 174 (362)
+ +.+|+++||+||++|++||++ +++.|||+++++||.++|+ | ||||.++. +||.|+|+
T Consensus 83 ~~~g~~~~~~hl~~Ty~Al~~L~ilg~~-~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~ 161 (390)
T 3dra_B 83 QKTNQKYDCPNLSSTLFALYNLLILKSP-YHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRV 161 (390)
T ss_dssp GGSCTTTSCCBHHHHHHHHHHHHHTTCC-GGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHH
T ss_pred CCCCCccCcccHHHHHHHHHHHHHhCch-hhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHH
Confidence 5 789999999999999999976 5688999999999999999 7 89999654 68999999
Q ss_pred HHHHHHHHHHhccCC-------------HHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccH
Q 018000 175 CYTAISVASILNILD-------------DELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDL 241 (362)
Q Consensus 175 ~Y~al~~~~LL~~~~-------------~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~ 241 (362)
||||+++++||+..+ .++++++++||++||++|||||..|+.|||++|||||||||++|++. ..|+
T Consensus 162 ~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~d~ 240 (390)
T 3dra_B 162 CYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LEKL 240 (390)
T ss_dssp HHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GGGC
T ss_pred HHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cccH
Confidence 999999999999887 56789999999999999999999999999999999999999999998 5789
Q ss_pred HHHHHHHHhCCC----------------------------CCCcccCCCCCCCcccccchHHHHHHHHhhhhhccCCCCC
Q 018000 242 DALIGWVVFRQG----------------------------VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGESPT 293 (362)
Q Consensus 242 ~~l~~WL~~rQ~----------------------------~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~~~~~~ 293 (362)
+++++||++||. ++|||+|||||+||+|||||++++|+||++.. .
T Consensus 241 ~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~~~~------~- 313 (390)
T 3dra_B 241 KSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNF------I- 313 (390)
T ss_dssp HHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHCGGG------G-
T ss_pred HHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhcccc------c-
Confidence 999999999998 47999999999999999999999999998510 0
Q ss_pred CcccCCcccccCCCccccCCCCCCCCCCCcccccCCCcccccccccCcccccHHHHHHHHHHccCCc
Q 018000 294 PVDQRGAECSIDNTQTTTASDVSEGDGSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQ 360 (362)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~~ 360 (362)
.++|+++|++|||.|||++
T Consensus 314 ------------------------------------------------~l~d~~~l~~yiL~c~Q~~ 332 (390)
T 3dra_B 314 ------------------------------------------------KLVDLNKAEDYLLNKTQNQ 332 (390)
T ss_dssp ------------------------------------------------GGSCHHHHHHHHHHTTBCT
T ss_pred ------------------------------------------------cccCHHHHHHHHHHhccCC
Confidence 3899999999999999985
No 3
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=7e-72 Score=563.69 Aligned_cols=311 Identities=48% Similarity=0.873 Sum_probs=282.9
Q ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHH
Q 018000 2 EPDTEPRGTVTQREQSMVLNDVNMLYHIYATVPPIAQTLMMELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHS 81 (362)
Q Consensus 2 ~~~~~~~~t~ts~~q~~~e~~~~~~~~~~~~~~~~~~~~~~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~s 81 (362)
..+++++.|.||++|.+||+.|.++|+.+.....+ ..+.|.+++|++||.++++.+|++|..+|++|+|++||+|++
T Consensus 34 ~~~~~~~~t~ts~~Q~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~hi~~l~~~lq~~~gg~~a~D~~r~~l~y~~l~a 110 (437)
T 2h6f_B 34 RLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLV---PRLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHS 110 (437)
T ss_dssp SCCCTTCCCHHHHHHHHHHHHHHHHHHTTCBTTBC---CCCCCCHHHHHHHHHHHTTEECGGGGGGTTCHHHHHHHHHHH
T ss_pred ecccCCCCCCCHHHHHHHHHHHHHHHHHHhhcccC---CcccccHHHHHHHHHHcCCCCCCCcccccCCCccHHHHHHHH
Confidence 35789999999999999999999999887643111 125799999999999998889999999999999999999999
Q ss_pred HHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCc
Q 018000 82 MALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGA 161 (362)
Q Consensus 82 L~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGg 161 (362)
|++||.+++++.++++++||++||++||||++.+++.+|+..||+||.+|.++|..++++.++++++++||+++|++|||
T Consensus 111 L~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGs 190 (437)
T 2h6f_B 111 LELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190 (437)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSC
T ss_pred HHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCC
Confidence 99999888888999999999999999999999999999999999999999999964335678899999999999999999
Q ss_pred eeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccH
Q 018000 162 FRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDL 241 (362)
Q Consensus 162 F~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~ 241 (362)
|.++++|+.|+|++||||+++.+++..+.+.++++++||++||++|||||..|+.|||+++|||||+||.++|+.+.+++
T Consensus 191 f~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~ 270 (437)
T 2h6f_B 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNL 270 (437)
T ss_dssp BBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCH
T ss_pred eeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccH
Confidence 99998999999999999999999998877888999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHhCCC-CCCcccCCCCCCCcccccchHHHHHHHHhhhhhccCC-CCCCcccCCcccccCCCccccCCCCCCCC
Q 018000 242 DALIGWVVFRQG-VEGGFQGRTNKLVDGCYSFWQGGVFALLRRFHSIIGE-SPTPVDQRGAECSIDNTQTTTASDVSEGD 319 (362)
Q Consensus 242 ~~l~~WL~~rQ~-~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
+++++||.+||. ++|||+|||||+||+|||||++++|+||++++...+. .+ .
T Consensus 271 ~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~--------------------------~ 324 (437)
T 2h6f_B 271 KSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPAL--------------------------S 324 (437)
T ss_dssp HHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTC--------------------------C
T ss_pred HHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhccccccc--------------------------c
Confidence 999999999999 8999999999999999999999999999998643221 11 0
Q ss_pred CCCcccccCCCcccccccccCcccccHHHHHHHHHHccCCc
Q 018000 320 GSSDEISSQGDEHCHFQHREREPLFHSIALQRYLLLCSQVQ 360 (362)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~yil~c~q~~ 360 (362)
. ..+++|+++|++|||.|||.+
T Consensus 325 ~-------------------~~~l~d~~~l~~yIL~~~Q~~ 346 (437)
T 2h6f_B 325 M-------------------SHWMFHQQALQEYILMCCQCP 346 (437)
T ss_dssp S-------------------SCCSSCHHHHHHHHHHHSBCT
T ss_pred c-------------------ccccCCHHHHHHHHHHHccCC
Confidence 0 126999999999999999986
No 4
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=3.6e-68 Score=527.67 Aligned_cols=237 Identities=31% Similarity=0.607 Sum_probs=222.1
Q ss_pred hhhhHHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccC---------CCCCCC
Q 018000 42 MELQRKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQD---------PNGGYG 112 (362)
Q Consensus 42 ~~l~r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~---------~dGGFg 112 (362)
+.|.|++|++||+++++.+|.+|+++|++|+|++||+|++|++||. ++...++++|+||++||+ ++|||+
T Consensus 18 ~~l~~~~H~~y~~~~l~~lp~~~~~~d~~r~~~~yw~l~~L~lLg~-l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~ 96 (377)
T 1n4q_B 18 LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDS-LDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR 96 (377)
T ss_dssp CCCCHHHHHHHHHHHHHEECGGGGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred cccCHHHHHHHHHHHhhcCCccccccccchHHHHHHHHHHHHHhCC-CCccCHHHHHHHHHHhcCCccccccCCCCCccC
Confidence 4699999999999999999999999999999999999999999997 444458999999999999 689999
Q ss_pred CCCCC-----------------CCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeec-cCCCcccch
Q 018000 113 GGPGQ-----------------MPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMH-DAGEIDVRA 174 (362)
Q Consensus 113 g~pg~-----------------~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~-~~ge~D~r~ 174 (362)
+++++ .+|+++||+||++|++++.. ++.|||+++++||.++|+|||||.+. .+|+.|+|+
T Consensus 97 g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~--~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~Dirf 174 (377)
T 1n4q_B 97 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDD--LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRF 174 (377)
T ss_dssp SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCC--STTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHH
T ss_pred CCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHH
Confidence 98764 59999999999999999964 78899999999999999999999986 789999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcc----cHHHHHHHHHh
Q 018000 175 CYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRL----DLDALIGWVVF 250 (362)
Q Consensus 175 ~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~----d~~~l~~WL~~ 250 (362)
||||++++++++..+.++++++++||++||++|||||..|+.|||+++||||+|+|.+++..+.. +++++++||++
T Consensus 175 tY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~ 254 (377)
T 1n4q_B 175 VYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIM 254 (377)
T ss_dssp HHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHh
Confidence 99999999999988788899999999999999999999999999999999999999999987654 79999999999
Q ss_pred CCCCCCcccCCCCCCCcccccchHHHHHHHHhh
Q 018000 251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLRR 283 (362)
Q Consensus 251 rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ll~~ 283 (362)
|| +|||+|||||+||+|||||++++|+||++
T Consensus 255 rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~ 285 (377)
T 1n4q_B 255 RQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKI 285 (377)
T ss_dssp TB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTC
T ss_pred cC--CCCcCCCCCcchhHHHHHHHHHHHHHhCC
Confidence 99 89999999999999999999999999974
No 5
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=1.7e-64 Score=494.10 Aligned_cols=238 Identities=29% Similarity=0.525 Sum_probs=227.8
Q ss_pred hhhhHHHHHHHHHHhc-cCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000 42 MELQRKNHVEYLLRGL-QQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120 (362)
Q Consensus 42 ~~l~r~~H~~yl~~~l-~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh 120 (362)
.+|.|++|++||++++ +.+|..|..+|++|+|++||++++|++||. ++..+++++++||++||++||||+++|++.+|
T Consensus 16 ~~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~-l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~ 94 (331)
T 3dss_B 16 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQ-LHRMNKEEILVFIKSCQHECGGVSASIGHDPH 94 (331)
T ss_dssp CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBC
T ss_pred hhhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHhhhcCCCCCcCCCCCCCcc
Confidence 5799999999999986 468999999999999999999999999997 66678999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI 200 (362)
Q Consensus 121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI 200 (362)
+.+||+||++|++++. ++.+|++++++||.++|++||||.++++||.|+|+||||++++.+++.++.+.++++++||
T Consensus 95 l~~Ty~Al~~L~~l~~---~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L 171 (331)
T 3dss_B 95 LLYTLSAVQILTLYDS---IHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFV 171 (331)
T ss_dssp HHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---ccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999974 7889999999999999999999999999999999999999999999988778899999999
Q ss_pred HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHH
Q 018000 201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL 280 (362)
Q Consensus 201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~l 280 (362)
++||++||||+..|+.|||++||||||++|.+++..+.++++++++||.+||.++|||+||+||++|+|||||++++|.+
T Consensus 172 ~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~l 251 (331)
T 3dss_B 172 LSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKI 251 (331)
T ss_dssp HTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHH
T ss_pred HHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 018000 281 LRR 283 (362)
Q Consensus 281 l~~ 283 (362)
+++
T Consensus 252 lg~ 254 (331)
T 3dss_B 252 IGR 254 (331)
T ss_dssp TTC
T ss_pred cCC
Confidence 874
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=7.8e-40 Score=319.79 Aligned_cols=236 Identities=18% Similarity=0.272 Sum_probs=218.0
Q ss_pred hhhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCc
Q 018000 43 ELQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPH 120 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~sh 120 (362)
.++|+++++||.++. +.+|+|... ..+++..+|.++.+|.+++. ++..+++++++||.++|++||||++.+..++|
T Consensus 65 ~~~r~~~i~~l~s~Q-~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~-~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d 142 (331)
T 3dss_B 65 RMNKEEILVFIKSCQ-HECGGVSASIGHDPHLLYTLSAVQILTLYDS-IHVINVDKVVAYVQSLQKEDGSFAGDIWGEID 142 (331)
T ss_dssp GSCHHHHHHHHHHTB-CTTSCBBSSTTSCBCHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBC
T ss_pred hhhHHHHHHHHhhhc-CCCCCcCCCCCCCccHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHhccCCCCCCEecccCCCCc
Confidence 478999999999976 457888763 23578889999999999986 66678999999999999999999998888999
Q ss_pred hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018000 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNYI 200 (362)
Q Consensus 121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI 200 (362)
+..||+|+.+|.++|. ++.++++++++||+++|++||||..+++.++++..||||++++.+++..+..+++++++||
T Consensus 143 ~~~ty~Al~~L~llg~---~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL 219 (331)
T 3dss_B 143 TRFSFCAVATLALLGK---LDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWL 219 (331)
T ss_dssp HHHHHHHHHHHHHHTC---GGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 9999999999999996 4667889999999999999999999999999999999999999999887767789999999
Q ss_pred HhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCC-CcccCCCCCCCcccccchHHHHHH
Q 018000 201 LSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVE-GGFQGRTNKLVDGCYSFWQGGVFA 279 (362)
Q Consensus 201 ~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~e-GGF~GR~nKlvD~CYsfW~~a~l~ 279 (362)
.++|++||||++.|+.++|..||||++++|.++|+.+.+|++++++||.++|+.+ |||+.+|++.+|..++||+++.|.
T Consensus 220 ~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls 299 (331)
T 3dss_B 220 CERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLS 299 (331)
T ss_dssp HTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHH
T ss_pred HHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988899999999999999976 999999999999999999999999
Q ss_pred HHhh
Q 018000 280 LLRR 283 (362)
Q Consensus 280 ll~~ 283 (362)
+++.
T Consensus 300 ~~g~ 303 (331)
T 3dss_B 300 LLGE 303 (331)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 9974
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=1.1e-32 Score=278.09 Aligned_cols=237 Identities=15% Similarity=0.167 Sum_probs=210.4
Q ss_pred hhHHHHHHHHHHhccCCCCCceec--cCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCCCCCCCCCCCC
Q 018000 44 LQRKNHVEYLLRGLQQLGPSFCSL--DANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNGGYGGGPGQMP 119 (362)
Q Consensus 44 l~r~~H~~yl~~~l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~s 119 (362)
..+++.++||.++.. ..|+|... +.+.+..+|.+|.+|.++|.. .+...++++++||+++|++||||++.++.++
T Consensus 121 ~~~~r~v~~l~s~Q~-~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~ 199 (437)
T 2h6f_B 121 IVATDVCQFLELCQS-PEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEV 199 (437)
T ss_dssp HHHHHHHHHHHHHBC-TTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCB
T ss_pred HHHHHHHHHHHHhCC-CCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCc
Confidence 467889999998654 57888763 456888999999999999974 3445689999999999999999999888899
Q ss_pred chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000 120 HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILDDELLQNVGNY 199 (362)
Q Consensus 120 hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y 199 (362)
|+..||+|+.+|.++|.. +....+++++||+++|++||||...++++++...||||++++.+++..+...++++++|
T Consensus 200 d~~~ty~A~~~L~llg~~---~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~w 276 (437)
T 2h6f_B 200 DVRSAYCAASVASLTNII---TPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQW 276 (437)
T ss_dssp SHHHHHHHHHHHHHTTCC---CTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHH
T ss_pred cchhHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHH
Confidence 999999999999999853 44456789999999999999999999999999899999999988887776788999999
Q ss_pred HHhccC-CCCCcCCCCCCCCchhHhHHHHHHHHHhccC-------------CcccHHHHHHHHHh-CCCCCCcccCCCCC
Q 018000 200 ILSCQT-YEGGIAGEPGSEAHGGYTFCGLAAMILINEA-------------DRLDLDALIGWVVF-RQGVEGGFQGRTNK 264 (362)
Q Consensus 200 I~scQ~-~dGGFg~~pg~esh~~~TfcALaaL~llg~~-------------~~~d~~~l~~WL~~-rQ~~eGGF~GR~nK 264 (362)
|++||. .+|||.+.|+..+++-|||+++++|.+|+.. ..+|.+++.+||.. .|..+|||+.++++
T Consensus 277 L~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~ 356 (437)
T 2h6f_B 277 VTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGK 356 (437)
T ss_dssp HHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTS
T ss_pred HHhcCCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCC
Confidence 999999 7899999999999999999999999999753 15789999999987 78899999999999
Q ss_pred CCcccccchHHHHHHHHhhh
Q 018000 265 LVDGCYSFWQGGVFALLRRF 284 (362)
Q Consensus 265 lvD~CYsfW~~a~l~ll~~~ 284 (362)
.+|...+|..++.|.+++..
T Consensus 357 ~~D~yHT~y~L~gLsl~~~~ 376 (437)
T 2h6f_B 357 SRDFYHTCYCLSGLSIAQHF 376 (437)
T ss_dssp CCCHHHHHHHHHHHHHHHEE
T ss_pred CCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999853
No 8
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=1e-31 Score=266.32 Aligned_cols=235 Identities=14% Similarity=0.201 Sum_probs=211.7
Q ss_pred hhHHHHHHHHHHhccC--------CCCCceec-------------------cCChhHHHHHHHHHHHHhCCCCCHHhHHH
Q 018000 44 LQRKNHVEYLLRGLQQ--------LGPSFCSL-------------------DANRPWICYWILHSMALLGEFVDADLEDR 96 (362)
Q Consensus 44 l~r~~H~~yl~~~l~~--------l~~~~~~l-------------------D~sr~w~~Yw~l~sL~lLg~~~~~~~~~~ 96 (362)
+++++.++|+.++... ..++|... |..++..+|.+|.+|.+|+..++..++++
T Consensus 67 ~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~ 146 (377)
T 1n4q_B 67 VNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEA 146 (377)
T ss_dssp SCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHH
T ss_pred cCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHH
Confidence 5699999999986541 24667543 34789999999999999998777778899
Q ss_pred HHHHHhhccCCCCCCCCC-CCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchH
Q 018000 97 TIEFLSRCQDPNGGYGGG-PGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRAC 175 (362)
Q Consensus 97 ~i~~l~~~Q~~dGGFgg~-pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~ 175 (362)
+++||+++|.+||+|.+. .....++-.||+|+.+|.++|. +..++++++++||+++|++||||...+++|+..-.|
T Consensus 147 ~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~---~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T 223 (377)
T 1n4q_B 147 CLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNN---WSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGST 223 (377)
T ss_dssp HHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTC---GGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHH
T ss_pred HHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHH
Confidence 999999999999999986 4568899999999999999996 466788999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCHH----HHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCcccHHHHHHHHHhC
Q 018000 176 YTAISVASILNILDDE----LLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADRLDLDALIGWVVFR 251 (362)
Q Consensus 176 Y~al~~~~LL~~~~~~----~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~r 251 (362)
||||+++.+++..+.. .++++++||.+.| +|||.++|+..++.-|+|+.+++|.+|+..+.+|.+++.+||...
T Consensus 224 ~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~c 301 (377)
T 1n4q_B 224 FCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILST 301 (377)
T ss_dssp HHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHH
Confidence 9999999999865433 7899999999999 999999999999999999999999999998889999999999999
Q ss_pred CCC-CCcccCCCCCCCcccccchHHHHHHHHhh
Q 018000 252 QGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRR 283 (362)
Q Consensus 252 Q~~-eGGF~GR~nKlvD~CYsfW~~a~l~ll~~ 283 (362)
|.+ .|||+.+|++.+|.-.||..++.|.+++.
T Consensus 302 Q~~~~GGf~~~p~~~~D~~HT~~~LagLsl~~~ 334 (377)
T 1n4q_B 302 QDRLVGGFAKWPDSHPDALHAYFGICGLSLMEE 334 (377)
T ss_dssp BCTTTCSBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 997 89999999999999999999999999974
No 9
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.97 E-value=4.7e-31 Score=261.87 Aligned_cols=240 Identities=18% Similarity=0.204 Sum_probs=209.4
Q ss_pred hhhHHHHHHHHHHhccC---CCCCceec----------cCChhHHHHHHHHHHHHhCCC-CCHHhHHHHHHHHhhccC--
Q 018000 43 ELQRKNHVEYLLRGLQQ---LGPSFCSL----------DANRPWICYWILHSMALLGEF-VDADLEDRTIEFLSRCQD-- 106 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~~---l~~~~~~l----------D~sr~w~~Yw~l~sL~lLg~~-~~~~~~~~~i~~l~~~Q~-- 106 (362)
..+|++.++|+.+|... ..++|... +...++.+|++|.+|.+||.+ ++..+|+++++||.+||.
T Consensus 52 ~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~ 131 (390)
T 3dra_B 52 NQELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKD 131 (390)
T ss_dssp HHHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCS
T ss_pred hHHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCC
Confidence 45688999999998642 12566543 567899999999999999986 355679999999999999
Q ss_pred -C-CCCCCCCC-----------CCCCchhhhHHHHHHHHHcCCCCC----------CChhhHHHHHHHHHhcCCCCCcee
Q 018000 107 -P-NGGYGGGP-----------GQMPHLATTYAAVNALISLGGEKS----------LPSINRSKVYTFLKCMKDPSGAFR 163 (362)
Q Consensus 107 -~-dGGFgg~p-----------g~~shl~~Ty~Av~sL~ilg~~~~----------l~~idr~~~~~fL~s~Q~~dGgF~ 163 (362)
+ ||||+..+ +.+.++-.||+|++++.+|+.... ...+|.+++++||.++|+.||||.
T Consensus 132 ~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg 211 (390)
T 3dra_B 132 GINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFS 211 (390)
T ss_dssp STTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBC
T ss_pred CCCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcC
Confidence 7 89999543 568999999999999999986421 015889999999999999999999
Q ss_pred eccCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccC----------------------------CCCCcCCCCC
Q 018000 164 MHDAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQT----------------------------YEGGIAGEPG 215 (362)
Q Consensus 164 ~~~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~----------------------------~dGGFg~~pg 215 (362)
..++.|+....||||+++++||+.+ ..+++++++||.++|. .+|||.++|+
T Consensus 212 ~~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~n 290 (390)
T 3dra_B 212 STIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGREN 290 (390)
T ss_dssp SSTTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTT
T ss_pred CCCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCC
Confidence 9999999999999999999999876 3678999999999998 4799999999
Q ss_pred CCCchhHhHHHHHHHHHhcc--CCcccHHHHHHHHHhC-CCC-CCcccCCCCCCCcccccchHHHHHHHHhh
Q 018000 216 SEAHGGYTFCGLAAMILINE--ADRLDLDALIGWVVFR-QGV-EGGFQGRTNKLVDGCYSFWQGGVFALLRR 283 (362)
Q Consensus 216 ~esh~~~TfcALaaL~llg~--~~~~d~~~l~~WL~~r-Q~~-eGGF~GR~nKlvD~CYsfW~~a~l~ll~~ 283 (362)
..+|.-|+||++++|.+|+. .+.+|.+++.+||..+ |.. .|||+.+|.+.+|...||..++.|++++.
T Consensus 291 Kl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~~ 362 (390)
T 3dra_B 291 KLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWNH 362 (390)
T ss_dssp CCBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCC
Confidence 99999999999999999995 5678999999999997 454 89999999999999999999999999984
No 10
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.96 E-value=2.7e-29 Score=255.44 Aligned_cols=239 Identities=17% Similarity=0.154 Sum_probs=211.2
Q ss_pred hhhHHHHHHHHHHhccCCCCCcee----ccCChhHHHHHHHHHHHHhCCC-----CCHHh--HHHHHHHHhhccCCCCCC
Q 018000 43 ELQRKNHVEYLLRGLQQLGPSFCS----LDANRPWICYWILHSMALLGEF-----VDADL--EDRTIEFLSRCQDPNGGY 111 (362)
Q Consensus 43 ~l~r~~H~~yl~~~l~~l~~~~~~----lD~sr~w~~Yw~l~sL~lLg~~-----~~~~~--~~~~i~~l~~~Q~~dGGF 111 (362)
...+++.++||.++.. ..|+|.. .+.+.+..+|.+|.+|.+|+.. ++..+ ++++++||.++|.+||+|
T Consensus 108 ~~~~~~~I~~Ils~Q~-~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF 186 (520)
T 3q7a_B 108 QGTKDRVVSTLLHFLS-PKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGF 186 (520)
T ss_dssp HHHHHHHHHHHHTTBC-TTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCB
T ss_pred hHHHHHHHHHHHHHcC-CCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCE
Confidence 3578899999998754 5778875 3567899999999999999974 33455 889999999999999999
Q ss_pred CCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceee-----------------------ccCC
Q 018000 112 GGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM-----------------------HDAG 168 (362)
Q Consensus 112 gg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~-----------------------~~~g 168 (362)
.+..+...++-.||+|+.+|.++|. +..++.+++++||+++|+.||||.. .|++
T Consensus 187 ~g~~wGe~Dir~TY~Al~~L~lLg~---~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~ 263 (520)
T 3q7a_B 187 VVCEGGEVDVRGTYCLLVVATLLDI---ITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMA 263 (520)
T ss_dssp BSSTTCCBCHHHHHHHHHHHHHHTC---CCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECS
T ss_pred ecCCCCCchHHHHHHHHHHHHHcCC---CChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCC
Confidence 9877778999999999999999985 4677889999999999999999998 6789
Q ss_pred CcccchHHHHHHHHHHhccCC------HHHHHHHHHHHHhccC---CCCCcCCCCCCCCchhHhHHHHHHHHHhccC---
Q 018000 169 EIDVRACYTAISVASILNILD------DELLQNVGNYILSCQT---YEGGIAGEPGSEAHGGYTFCGLAAMILINEA--- 236 (362)
Q Consensus 169 e~D~r~~Y~al~~~~LL~~~~------~~~~~~~~~yI~scQ~---~dGGFg~~pg~esh~~~TfcALaaL~llg~~--- 236 (362)
|+..-.||||++++.||+.++ ..++++++.||...|. .+|||.++|+..+|+-|+||..++|.||+..
T Consensus 264 EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~ 343 (520)
T 3q7a_B 264 EAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRR 343 (520)
T ss_dssp CCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhc
Confidence 999999999999999999763 4678999999999997 3599999999999999999999999999863
Q ss_pred -----------------------------CcccHHHHHHHHH-hCCCCC---CcccCCCCCCCcccccchHHHHHHHHhh
Q 018000 237 -----------------------------DRLDLDALIGWVV-FRQGVE---GGFQGRTNKLVDGCYSFWQGGVFALLRR 283 (362)
Q Consensus 237 -----------------------------~~~d~~~l~~WL~-~rQ~~e---GGF~GR~nKlvD~CYsfW~~a~l~ll~~ 283 (362)
..+|.+++.+||+ ..|... |||+.+|.|.+|...+|..++.|++++.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh 423 (520)
T 3q7a_B 344 EKSRKVKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQH 423 (520)
T ss_dssp HHHHHC---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCC
Confidence 2478999999998 588876 9999999999999999999999999986
Q ss_pred hh
Q 018000 284 FH 285 (362)
Q Consensus 284 ~~ 285 (362)
..
T Consensus 424 ~~ 425 (520)
T 3q7a_B 424 KM 425 (520)
T ss_dssp CE
T ss_pred CC
Confidence 54
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.89 E-value=7e-22 Score=207.75 Aligned_cols=223 Identities=17% Similarity=0.154 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHhccCCCCC------------ceecc----CChhHHHHHHHHHHHHhCCCC---CHHhHHHHHHHHhhcc
Q 018000 45 QRKNHVEYLLRGLQQLGPS------------FCSLD----ANRPWICYWILHSMALLGEFV---DADLEDRTIEFLSRCQ 105 (362)
Q Consensus 45 ~r~~H~~yl~~~l~~l~~~------------~~~lD----~sr~w~~Yw~l~sL~lLg~~~---~~~~~~~~i~~l~~~Q 105 (362)
..+|.++||.+.....++. +.-.+ ....|.+.+++.+|..++.+. .++..+++++||+++|
T Consensus 332 ~~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q 411 (631)
T 2sqc_A 332 RLVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQ 411 (631)
T ss_dssp HHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhc
Confidence 3567889999876543332 21111 145899999999999999742 2346789999999999
Q ss_pred CCCCCCCCCCC-------------------CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc
Q 018000 106 DPNGGYGGGPG-------------------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD 166 (362)
Q Consensus 106 ~~dGGFgg~pg-------------------~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~ 166 (362)
++||||+..+. ..+++..|..++.+|..++.+ .....++++++||.++|++||||.+..
T Consensus 412 ~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~--~~~~~i~rai~~L~~~Q~~DGsw~g~w 489 (631)
T 2sqc_A 412 SSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYD--DAWKVIRRAVEYLKREQKPDGSWFGRW 489 (631)
T ss_dssp CTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCC--TTSHHHHHHHHHHHHHCCTTSCCCCSS
T ss_pred CCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 99999975321 127788999999999999853 223456899999999999999996543
Q ss_pred CCCcccchHHHHHHHHHHhccCC----HHHHHHHHHHHHhccCCCCCcCCCC----------CCCCchhHhHHHHHHHHH
Q 018000 167 AGEIDVRACYTAISVASILNILD----DELLQNVGNYILSCQTYEGGIAGEP----------GSEAHGGYTFCGLAAMIL 232 (362)
Q Consensus 167 ~ge~D~r~~Y~al~~~~LL~~~~----~~~~~~~~~yI~scQ~~dGGFg~~p----------g~esh~~~TfcALaaL~l 232 (362)
+++.+|+.+.++..|.... ...++++++||++||+.||||+..+ +.++|...|+|||.+|..
T Consensus 490 ----g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ 565 (631)
T 2sqc_A 490 ----GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIA 565 (631)
T ss_dssp ----BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHH
T ss_pred ----CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 4677898877766554332 4678999999999999999998653 467899999999999999
Q ss_pred hccCCcccHHHHHHHHHhCCCCCCcccCCCCC---CCcccccch
Q 018000 233 INEADRLDLDALIGWVVFRQGVEGGFQGRTNK---LVDGCYSFW 273 (362)
Q Consensus 233 lg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nK---lvD~CYsfW 273 (362)
++..+...++++++||.++|.++|||...... .+..||--|
T Consensus 566 ag~~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y 609 (631)
T 2sqc_A 566 GGRAESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGY 609 (631)
T ss_dssp TTCSSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEE
T ss_pred cCCCChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeec
Confidence 99876667899999999999999999887543 568898753
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.83 E-value=2.6e-19 Score=191.01 Aligned_cols=224 Identities=13% Similarity=0.123 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhccCC-------------CCCceecc----CChhHHHHHHHHHHHHhCC-------CCCHHhHHHHHHHH
Q 018000 46 RKNHVEYLLRGLQQL-------------GPSFCSLD----ANRPWICYWILHSMALLGE-------FVDADLEDRTIEFL 101 (362)
Q Consensus 46 r~~H~~yl~~~l~~l-------------~~~~~~lD----~sr~w~~Yw~l~sL~lLg~-------~~~~~~~~~~i~~l 101 (362)
.++-++||.++...- +|+|.-.+ ....+.+-+++.+|..++. .++++..+++++||
T Consensus 411 l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wL 490 (732)
T 1w6k_A 411 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL 490 (732)
T ss_dssp HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 457788998876422 15554322 1356788889999888742 35667789999999
Q ss_pred hhccCCCCCCCCCCC---------------------CCCchhhhHHHHHHHHHcCCC-CCCC----hhhHHHHHHHHHhc
Q 018000 102 SRCQDPNGGYGGGPG---------------------QMPHLATTYAAVNALISLGGE-KSLP----SINRSKVYTFLKCM 155 (362)
Q Consensus 102 ~~~Q~~dGGFgg~pg---------------------~~shl~~Ty~Av~sL~ilg~~-~~l~----~idr~~~~~fL~s~ 155 (362)
+++|++||||+.... ..+++..|.+++.+|..++.. .... ....+++++||.+.
T Consensus 491 ls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~ 570 (732)
T 1w6k_A 491 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ 570 (732)
T ss_dssp HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence 999999999963211 235778899999999988631 0111 12357899999999
Q ss_pred CCCCCceeeccCCCcccchHHHHHHHHHHhccCC-H----HHHHHHHHHHHhccCCCCCcCCC----------CCCCCch
Q 018000 156 KDPSGAFRMHDAGEIDVRACYTAISVASILNILD-D----ELLQNVGNYILSCQTYEGGIAGE----------PGSEAHG 220 (362)
Q Consensus 156 Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~-~----~~~~~~~~yI~scQ~~dGGFg~~----------pg~esh~ 220 (362)
|++||||.+.. +..++.++++++.++.+++... . ..++++++||+++|+.||||+.. ++.++|.
T Consensus 571 Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v 649 (732)
T 1w6k_A 571 QRADGSWEGSW-GVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI 649 (732)
T ss_dssp SCTTSCCCCSS-BSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred cCCCCCccCcC-CCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCH
Confidence 99999998755 3344445555555566666532 1 57899999999999999999974 3567899
Q ss_pred hHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCCCC--CCCcccc
Q 018000 221 GYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGRTN--KLVDGCY 270 (362)
Q Consensus 221 ~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR~n--KlvD~CY 270 (362)
..|.+||.+|..++..+...++++++||.++|..+|||.-++. ..+..||
T Consensus 650 ~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~ 701 (732)
T 1w6k_A 650 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCA 701 (732)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEE
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhh
Confidence 9999999999988887666789999999999999999996643 3466787
No 13
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.74 E-value=3.7e-17 Score=174.40 Aligned_cols=236 Identities=17% Similarity=0.193 Sum_probs=165.0
Q ss_pred HHHHHHHHHHhccCCCCCceecc--CChhHHHHHHHHHHHHhCCCCC---HHhHHHHHHHHhhccCCC------------
Q 018000 46 RKNHVEYLLRGLQQLGPSFCSLD--ANRPWICYWILHSMALLGEFVD---ADLEDRTIEFLSRCQDPN------------ 108 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~~~~---~~~~~~~i~~l~~~Q~~d------------ 108 (362)
..+|++.|.+.+..-+.+..... .+..|-+-+++.+|.-.|..-+ ....+++++||+++|..+
T Consensus 358 ~~~~l~~l~~~l~~~~dG~~~q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~ 437 (732)
T 1w6k_A 358 FQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQM 437 (732)
T ss_dssp HHHHHHTSGGGEEEETTEEEECSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCC
T ss_pred HHHHHHHHHHhheeCCCCceeCCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCC
Confidence 44577777665443343333332 3788999999999988875322 235689999999999876
Q ss_pred --CCCCCCCC--CCCchhhhHHHHHHHHHcCCCC-----CCChhhHHHHHHHHHhcCCCCCceeecc-------------
Q 018000 109 --GGYGGGPG--QMPHLATTYAAVNALISLGGEK-----SLPSINRSKVYTFLKCMKDPSGAFRMHD------------- 166 (362)
Q Consensus 109 --GGFgg~pg--~~shl~~Ty~Av~sL~ilg~~~-----~l~~idr~~~~~fL~s~Q~~dGgF~~~~------------- 166 (362)
|||+.... ..+++..|..++.+|..+.... ....-..+++++||.++|++||||....
T Consensus 438 ~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~ 517 (732)
T 1w6k_A 438 RKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNP 517 (732)
T ss_dssp CTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCC
T ss_pred CCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcc
Confidence 88876543 4689999999999998874210 1222234789999999999999995321
Q ss_pred ---CCCcccc--hHHH---HHHHHHHhccC--------CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHH
Q 018000 167 ---AGEIDVR--ACYT---AISVASILNIL--------DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAM 230 (362)
Q Consensus 167 ---~ge~D~r--~~Y~---al~~~~LL~~~--------~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL 230 (362)
.+...+. .+++ ++.++.+++.. ....++++++||+++|+.||||.+..+. .+.+.|++++.+|
T Consensus 518 ~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~-~~~Y~T~~al~AL 596 (732)
T 1w6k_A 518 SEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEAF 596 (732)
T ss_dssp CSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHHH
T ss_pred hhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCC-ccchHHHHHHHHH
Confidence 1122222 2233 33334434321 1356889999999999999999876543 5666799999999
Q ss_pred HHhccCCc-----ccHHHHHHHHHhCCCCCCcccCCC----------CCCCcccccchHHHHHHHHh
Q 018000 231 ILINEADR-----LDLDALIGWVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALLR 282 (362)
Q Consensus 231 ~llg~~~~-----~d~~~l~~WL~~rQ~~eGGF~GR~----------nKlvD~CYsfW~~a~l~ll~ 282 (362)
.++|.... ..++++++||.++|..+|||..+. .+..|.+.+.|++-+|..++
T Consensus 597 ~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ag 663 (732)
T 1w6k_A 597 ACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVR 663 (732)
T ss_dssp HHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHTT
T ss_pred HHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence 99997542 358999999999999999998643 44678888888876665443
No 14
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.73 E-value=1.3e-16 Score=167.79 Aligned_cols=237 Identities=15% Similarity=0.073 Sum_probs=164.8
Q ss_pred HHHHHHHHHHhccCCCC-Ccee-ccCChhHHHHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCC-------------CC
Q 018000 46 RKNHVEYLLRGLQQLGP-SFCS-LDANRPWICYWILHSMALLGEFVDADLEDRTIEFLSRCQDPN-------------GG 110 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~-~~~~-lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~d-------------GG 110 (362)
.++|++.+.+.+-.-+. ++.. --.|..|-+.|++.+|..+|.+.+...++++++||.++|..+ ||
T Consensus 283 ~~~~~~~~~~~~~~~~dGg~~~~~~~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~Gg 362 (631)
T 2sqc_A 283 FIKGWEGLELYGVELDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGG 362 (631)
T ss_dssp HHHHHHGGGGGEEECTTSCEEECSSCCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCC
T ss_pred HHHHHHHHHhceEEcCCCceeeCCCCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCC
Confidence 56677777766533232 4432 234789999999999999998655667889999999998643 44
Q ss_pred CCC--CCCCCCchhhhHHHHHHHHHcCCCCC-CChhhHHHHHHHHHhcCCCCCceeeccCC----------------C--
Q 018000 111 YGG--GPGQMPHLATTYAAVNALISLGGEKS-LPSINRSKVYTFLKCMKDPSGAFRMHDAG----------------E-- 169 (362)
Q Consensus 111 Fgg--~pg~~shl~~Ty~Av~sL~ilg~~~~-l~~idr~~~~~fL~s~Q~~dGgF~~~~~g----------------e-- 169 (362)
|+. .+...|++..|..++.+|..++.... ...-..+++++||.++|++||||.....+ .
T Consensus 363 W~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d 442 (631)
T 2sqc_A 363 FAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTD 442 (631)
T ss_dssp BCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSC
T ss_pred CccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccC
Confidence 432 23346889999999999999885210 01112468999999999999999642110 1
Q ss_pred -cccchHHHHHHHHHHhccC-CHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCC-cccHHHHHH
Q 018000 170 -IDVRACYTAISVASILNIL-DDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEAD-RLDLDALIG 246 (362)
Q Consensus 170 -~D~r~~Y~al~~~~LL~~~-~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~-~~d~~~l~~ 246 (362)
.++--|..++.++..++.. ....++++++||+++|+.||||.+..+ ..+...|..++.+|..++... ...++++++
T Consensus 443 ~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~ 521 (631)
T 2sqc_A 443 PPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALD 521 (631)
T ss_dssp CCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 2222233334444434431 236789999999999999999965544 345666777888888887642 346899999
Q ss_pred HHHhCCCCCCcccCCC----------CCCCcccccchHHHHHHHHhh
Q 018000 247 WVVFRQGVEGGFQGRT----------NKLVDGCYSFWQGGVFALLRR 283 (362)
Q Consensus 247 WL~~rQ~~eGGF~GR~----------nKlvD~CYsfW~~a~l~ll~~ 283 (362)
||.++|.++|||...+ ....|...++|++.+|..++.
T Consensus 522 ~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~ 568 (631)
T 2sqc_A 522 WVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGR 568 (631)
T ss_dssp HHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999995432 235677888898888776554
No 15
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.61 E-value=1.4e-14 Score=139.39 Aligned_cols=203 Identities=12% Similarity=0.120 Sum_probs=135.6
Q ss_pred ccCCCCCceeccCChhHHHHHHHHHHHHhCCC--CCHHh-------HHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHH
Q 018000 57 LQQLGPSFCSLDANRPWICYWILHSMALLGEF--VDADL-------EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAA 127 (362)
Q Consensus 57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~--~~~~~-------~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~A 127 (362)
|...|.+-...-.++.+-..+++.-|+..+.- ++++. .++.+++++++|++||||+..++..++...|.++
T Consensus 10 L~~~P~GC~EQ~~~~~~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v 89 (310)
T 2wy7_A 10 LIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYV 89 (310)
T ss_dssp GCCCCCSSTTHHHHHHHHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHhHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHH
Confidence 33455443333345555555566555665541 12223 3445566999999999999988889999999999
Q ss_pred HHHHHHcCCCCCCChhhHHHHHHHHHh-cCCCCCceeeccC-------CCc----ccchHHHHHHHHHHhcc-------C
Q 018000 128 VNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHDA-------GEI----DVRACYTAISVASILNI-------L 188 (362)
Q Consensus 128 v~sL~ilg~~~~l~~idr~~~~~fL~s-~Q~~dGgF~~~~~-------ge~----D~r~~Y~al~~~~LL~~-------~ 188 (362)
+.+|..+......+.--.++.++||.+ .|++||+|..... |+. +.+.+++|.++.+|+.. .
T Consensus 90 ~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~ 169 (310)
T 2wy7_A 90 VKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQV 169 (310)
T ss_dssp HHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCC
Confidence 999999875211222223589999996 9999999986532 111 33456777777666543 1
Q ss_pred --CHHHHHHHHHHHHhccCC---------------------------------CCCcCCCCCCCC-chhHhHHHHHHHHH
Q 018000 189 --DDELLQNVGNYILSCQTY---------------------------------EGGIAGEPGSEA-HGGYTFCGLAAMIL 232 (362)
Q Consensus 189 --~~~~~~~~~~yI~scQ~~---------------------------------dGGFg~~pg~es-h~~~TfcALaaL~l 232 (362)
....++++++||.+||+. +|++-..|+..+ ....|.+||.+|..
T Consensus 170 ~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~ 249 (310)
T 2wy7_A 170 NSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQ 249 (310)
T ss_dssp TTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHh
Confidence 135678999999999764 334433333211 44577788888877
Q ss_pred hccCCcccHHHHHHHHHhCCCCCCcccCC
Q 018000 233 INEADRLDLDALIGWVVFRQGVEGGFQGR 261 (362)
Q Consensus 233 lg~~~~~d~~~l~~WL~~rQ~~eGGF~GR 261 (362)
.+.. .++.++++||.++|..+|||...
T Consensus 250 ~~~~--~~~~~~v~wL~~qq~~~Ggw~sT 276 (310)
T 2wy7_A 250 LKDF--DFVPPVVRWLNEQRYYGGGYGST 276 (310)
T ss_dssp HTCT--TTHHHHHHHHHHTTCCCCSTTCH
T ss_pred cCCh--hhHHHHHHHHHHccCCCCCeecc
Confidence 7653 56899999999999999999763
No 16
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.60 E-value=4.7e-14 Score=133.35 Aligned_cols=166 Identities=14% Similarity=0.193 Sum_probs=119.0
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh-cCCCCCceeeccC-----
Q 018000 94 EDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHDA----- 167 (362)
Q Consensus 94 ~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s-~Q~~dGgF~~~~~----- 167 (362)
+++.+++++++|++||||+..++..++...|.+++.+|..+......+.--.++.++||.+ .|++||+|.....
T Consensus 40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~ 119 (277)
T 1qqf_A 40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQE 119 (277)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchh
Confidence 3445556999999999999988889999999999999999875212222223588999996 9999999986532
Q ss_pred --CCc----ccchHHHHHHHHHHhcc-------C--CHHHHHHHHHHHHhccCC--------------------------
Q 018000 168 --GEI----DVRACYTAISVASILNI-------L--DDELLQNVGNYILSCQTY-------------------------- 206 (362)
Q Consensus 168 --ge~----D~r~~Y~al~~~~LL~~-------~--~~~~~~~~~~yI~scQ~~-------------------------- 206 (362)
|+. |.+.++++.++.+|+.. . ....++++++||.++++.
T Consensus 120 ~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~ 199 (277)
T 1qqf_A 120 MIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLT 199 (277)
T ss_dssp GGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred hcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 111 33456777777666543 1 135678999999999764
Q ss_pred -------CCCcCCCCCCC-CchhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccCC
Q 018000 207 -------EGGIAGEPGSE-AHGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQGR 261 (362)
Q Consensus 207 -------dGGFg~~pg~e-sh~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~GR 261 (362)
+|++-..|+.. .....|.+||.+|...+. ..++.++++||.++|..+|||..-
T Consensus 200 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~sT 260 (277)
T 1qqf_A 200 KFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGST 260 (277)
T ss_dssp HHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTCH
T ss_pred HHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeecc
Confidence 34443334321 134567777777777664 356899999999999999999863
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.26 E-value=8.2e-11 Score=115.77 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=126.6
Q ss_pred ccCCCCCceeccCChhHHHHHHHHHHHHhCC--CCC-------HHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHH
Q 018000 57 LQQLGPSFCSLDANRPWICYWILHSMALLGE--FVD-------ADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAA 127 (362)
Q Consensus 57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~--~~~-------~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~A 127 (362)
|...|.+....-.++..-..+++..|.-.+. .++ ....++.+++|+++|++||||+..++..++...|.++
T Consensus 47 L~~~P~Gc~EQ~~s~~~P~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v 126 (367)
T 1hzf_A 47 LLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFV 126 (367)
T ss_dssp TCCCCCSSHHHHHHHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHH
Confidence 4456766554444444434455555554332 022 1245678899999999999999877777888889999
Q ss_pred HHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCC------------CcccchHHHHHHHHHHhccC-------
Q 018000 128 VNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG------------EIDVRACYTAISVASILNIL------- 188 (362)
Q Consensus 128 v~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~g------------e~D~r~~Y~al~~~~LL~~~------- 188 (362)
+.+|..++.....+.--.+++++||.+.|++||+|...... +.++ .-+|+++..|+...
T Consensus 127 ~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~~--~lTA~vl~aL~~~g~~~~~~~ 204 (367)
T 1hzf_A 127 LKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETV--ALTAFVTIALHHGLAVFQDEG 204 (367)
T ss_dssp HHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHHH--HHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCcccc--cchHHHHHHHHhhhccccccc
Confidence 99998887431122222467899999999999999865211 1222 22344444443211
Q ss_pred -------CHHHHHHHHHHHHhc--cC------------------------------------CCCC---cCCCC------
Q 018000 189 -------DDELLQNVGNYILSC--QT------------------------------------YEGG---IAGEP------ 214 (362)
Q Consensus 189 -------~~~~~~~~~~yI~sc--Q~------------------------------------~dGG---Fg~~p------ 214 (362)
....++++++||.+. ++ .+|+ |+...
T Consensus 205 ~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~ 284 (367)
T 1hzf_A 205 AEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNA 284 (367)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSSCEECC---------
T ss_pred cchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCccccc
Confidence 123567888998766 21 1444 44311
Q ss_pred ---------------CCCC-chhHhHHHHHHHHHhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000 215 ---------------GSEA-HGGYTFCGLAAMILINEADRLDLDALIGWVVFRQGVEGGFQG 260 (362)
Q Consensus 215 ---------------g~es-h~~~TfcALaaL~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G 260 (362)
...+ ....|.+||.+|...+.. ...+.+.++||.+.|+.+|||..
T Consensus 285 ~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~~-~~~~~~iv~WL~~qrn~~Ggw~s 345 (367)
T 1hzf_A 285 VSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK-AEMADQASAWLTRQGSFQGGFRS 345 (367)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTSTTCSCS
T ss_pred ccccccccccccccCCCccchhHHHHHHHHHHHhccCc-hhhhHHHHHHHHhCcCCCCCccc
Confidence 0111 456788888888765432 34578999999999999999974
No 18
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.16 E-value=4.6e-10 Score=126.70 Aligned_cols=201 Identities=14% Similarity=0.139 Sum_probs=134.1
Q ss_pred ccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhHHHHH-------HHHhhccCCCCCCCCCCCCCCchhhhHHHHH
Q 018000 57 LQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLEDRTI-------EFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129 (362)
Q Consensus 57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~~~~i-------~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~ 129 (362)
|.+.|.+-...-.++..-..+++.-|.-.+. ++++.+++++ ++++++|++||||+..++..++...|.+++.
T Consensus 831 L~~~PyGC~EQ~~s~~~p~~~~~~yl~~~~~-~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~ 909 (1325)
T 2pn5_A 831 LLGVPTGCGEQNMVKFVPNILVLDYLHAIGS-KEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGT 909 (1325)
T ss_dssp CCSSCCCSTTGGGGGTHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHH
T ss_pred HhcCCCCchhHHHHHHhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHH
Confidence 3344544333345565555555655555554 5555455554 4569999999999999999999999999999
Q ss_pred HHHHcCCCC-CCChhhHHHHHHHHHhcCCCCCceeeccC-------CCcccchHHHHHHHHHHhccC-----CHHHHHHH
Q 018000 130 ALISLGGEK-SLPSINRSKVYTFLKCMKDPSGAFRMHDA-------GEIDVRACYTAISVASILNIL-----DDELLQNV 196 (362)
Q Consensus 130 sL~ilg~~~-~l~~idr~~~~~fL~s~Q~~dGgF~~~~~-------ge~D~r~~Y~al~~~~LL~~~-----~~~~~~~~ 196 (362)
+|..+.... ..+.--.+++++||.+.|++||+|..... |+.+.+.+|++.+.++|+... ....++++
T Consensus 910 ~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a 989 (1325)
T 2pn5_A 910 SMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKG 989 (1325)
T ss_dssp HHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHH
T ss_pred HHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHH
Confidence 999985421 12222246899999999999999976421 344555677776666665431 12356788
Q ss_pred HHHHHhccCC-CCCcCCC-----------C------------------------CCCCchhHhHHHHHHHHHhccCCccc
Q 018000 197 GNYILSCQTY-EGGIAGE-----------P------------------------GSEAHGGYTFCGLAAMILINEADRLD 240 (362)
Q Consensus 197 ~~yI~scQ~~-dGGFg~~-----------p------------------------g~esh~~~TfcALaaL~llg~~~~~d 240 (362)
++||.++|.. +++++.. + ...+....|.+||.+|...+. ...
T Consensus 990 ~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~ 1067 (1325)
T 2pn5_A 990 MTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEK--YTD 1067 (1325)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTC--HHH
T ss_pred HHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhcc--chh
Confidence 9999988765 6665321 0 002344566777777666553 335
Q ss_pred HHHHHHHHHhCCCCCCcccC
Q 018000 241 LDALIGWVVFRQGVEGGFQG 260 (362)
Q Consensus 241 ~~~l~~WL~~rQ~~eGGF~G 260 (362)
..++++||.++|..+|||.-
T Consensus 1068 ~~~~v~wL~~q~~~~g~w~s 1087 (1325)
T 2pn5_A 1068 GIPVMNWLVNQRYVTGSFPS 1087 (1325)
T ss_dssp HHHHHHHHHTTCCTTSSCSS
T ss_pred hHHHHHHHHhccCCCCCccc
Confidence 68899999998888899873
No 19
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.10 E-value=1.2e-09 Score=102.90 Aligned_cols=178 Identities=15% Similarity=0.210 Sum_probs=117.5
Q ss_pred HHHHHHHHHHh------ccCCCCCceecc--CChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhh-ccCCCCCCCCC
Q 018000 46 RKNHVEYLLRG------LQQLGPSFCSLD--ANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGG 114 (362)
Q Consensus 46 r~~H~~yl~~~------l~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~-~Q~~dGGFgg~ 114 (362)
+++-++|+.+. +++.+|+|..-+ .+.+|++-+++.+|..+.. .+++..++++++||.+ .|.+||+|.+.
T Consensus 33 ~~~~~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~ 112 (277)
T 1qqf_A 33 RQEALELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQED 112 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCC
Confidence 44555563333 345688887543 4678999999999999875 4677788999999995 99999999763
Q ss_pred CCC-------------CCchhhhHHHHHHHHHcCCC--CCCC--hhhHHHHHHHHHhcCCC-------------------
Q 018000 115 PGQ-------------MPHLATTYAAVNALISLGGE--KSLP--SINRSKVYTFLKCMKDP------------------- 158 (362)
Q Consensus 115 pg~-------------~shl~~Ty~Av~sL~ilg~~--~~l~--~idr~~~~~fL~s~Q~~------------------- 158 (362)
.+. .+.+..|++++.+|...+.. ..+. ....+++++||.+.+++
T Consensus 113 ~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~ 192 (277)
T 1qqf_A 113 GPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNK 192 (277)
T ss_dssp SCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTC
T ss_pred ccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCC
Confidence 221 22355677788888766320 0011 22356889999987653
Q ss_pred --------------CCceeeccCCC-cccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHh
Q 018000 159 --------------SGAFRMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYT 223 (362)
Q Consensus 159 --------------dGgF~~~~~ge-~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~T 223 (362)
+|.|-..+++. .+++ -++++++.++.......+++++.||.+.|+++|||+. .-.|
T Consensus 193 ~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve--~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T 263 (277)
T 1qqf_A 193 LEEPYLTKFLNTAKDRNRWEEPGQQLYNVE--ATSYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGS-------TQAT 263 (277)
T ss_dssp CCTTHHHHHHHHSBTTTBCCCTTCHHHHHH--HHHHHHHHHHHTTCTTSHHHHHHHHHHCCCCTTSTTC-------HHHH
T ss_pred hHHHHHHHHHHhccCCCCCCCCCCccchhH--HHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeec-------chHH
Confidence 33332222211 1332 3445555555544456788999999999999999975 3568
Q ss_pred HHHHHHHHH
Q 018000 224 FCGLAAMIL 232 (362)
Q Consensus 224 fcALaaL~l 232 (362)
..||-||+-
T Consensus 264 ~~aL~AL~~ 272 (277)
T 1qqf_A 264 FMVFQALAQ 272 (277)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877764
No 20
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.01 E-value=3.8e-09 Score=101.30 Aligned_cols=167 Identities=16% Similarity=0.213 Sum_probs=111.3
Q ss_pred cCCCCCceecc--CChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhh-ccCCCCCCCCCCCC-------------CC
Q 018000 58 QQLGPSFCSLD--ANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGGPGQ-------------MP 119 (362)
Q Consensus 58 ~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~-~Q~~dGGFgg~pg~-------------~s 119 (362)
++.+|+|..-+ .+.+|++-+++.+|..+.. .+++..++++++||.+ .|.+||+|.+..+. .+
T Consensus 67 q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~ 146 (310)
T 2wy7_A 67 RQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEK 146 (310)
T ss_dssp BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCH
T ss_pred cCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCccccccc
Confidence 45688887543 4678999999999999875 4677788999999996 99999999763221 23
Q ss_pred chhhhHHHHHHHHHcCCC--CCCC--hhhHHHHHHHHHhcCCC---------------------------------CCce
Q 018000 120 HLATTYAAVNALISLGGE--KSLP--SINRSKVYTFLKCMKDP---------------------------------SGAF 162 (362)
Q Consensus 120 hl~~Ty~Av~sL~ilg~~--~~l~--~idr~~~~~fL~s~Q~~---------------------------------dGgF 162 (362)
.+..|.+++.+|...+.. ..+. ....+++++||.+.+++ +|.|
T Consensus 147 ~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~ 226 (310)
T 2wy7_A 147 DMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNR 226 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTB
T ss_pred ccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCC
Confidence 355677788888766320 0011 22356888999987653 2222
Q ss_pred eeccCCC-cccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHh
Q 018000 163 RMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI 233 (362)
Q Consensus 163 ~~~~~ge-~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~ll 233 (362)
...+++. .+++ -++++++.++.......+++++.||.+.|+++|||.. --.|..||-||+..
T Consensus 227 w~~~~~~~~~ve--~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~y 289 (310)
T 2wy7_A 227 WEDPGKQLYNVE--ATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQY 289 (310)
T ss_dssp CCCSSCHHHHHH--HHHHHHHHHHHHTCTTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHHHHH
T ss_pred CCCCCCcccchH--HHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeec-------cHHHHHHHHHHHHH
Confidence 2222110 1332 3445555555444456788999999999999999964 25677777777664
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.92 E-value=2.6e-08 Score=108.70 Aligned_cols=201 Identities=12% Similarity=0.131 Sum_probs=125.5
Q ss_pred ccCCCCCceeccCChhHHHHHHHHHHHHhCCC--CCHHhH-------HHHHHHHhhccCCCCCCCCCCCCCCchhhhHHH
Q 018000 57 LQQLGPSFCSLDANRPWICYWILHSMALLGEF--VDADLE-------DRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAA 127 (362)
Q Consensus 57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~--~~~~~~-------~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~A 127 (362)
|...|.+-...-.++..-..+++.-|...+.- ++++.+ ++.+++++.+|++||||+..++..++...|.++
T Consensus 255 L~~yPyGC~EQ~~s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv 334 (915)
T 2hr0_B 255 LIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYV 334 (915)
T ss_dssp GCSSCCCSTTGGGGGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHH
T ss_pred HHhCCCCcHHHHHHhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCcceehHHH
Confidence 44456543333455655555566656655531 122233 345566889999999999988888899999999
Q ss_pred HHHHHHcCCCCCCChhhHHHHHHHHHh-cCCCCCceeeccC-------CCc----ccchHHHHHHHHHHhcc-------C
Q 018000 128 VNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHDA-------GEI----DVRACYTAISVASILNI-------L 188 (362)
Q Consensus 128 v~sL~ilg~~~~l~~idr~~~~~fL~s-~Q~~dGgF~~~~~-------ge~----D~r~~Y~al~~~~LL~~-------~ 188 (362)
+..|..+......+.--..++++||.+ .|++||+|..... |.. +...++.|.++.+|+.. .
T Consensus 335 ~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~ 414 (915)
T 2hr0_B 335 VKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQV 414 (915)
T ss_dssp HHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTC
T ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCc
Confidence 999988864211222224678999995 9999999975321 111 11224445444444322 1
Q ss_pred --CHHHHHHHHHHHHhccCC---------------------------------CCC-cCCCCCCC-CchhHhHHHHHHHH
Q 018000 189 --DDELLQNVGNYILSCQTY---------------------------------EGG-IAGEPGSE-AHGGYTFCGLAAMI 231 (362)
Q Consensus 189 --~~~~~~~~~~yI~scQ~~---------------------------------dGG-Fg~~pg~e-sh~~~TfcALaaL~ 231 (362)
....++++++||.+.+.. +|. |.. ++.. +....|.+||.+|.
T Consensus 415 ~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~-~~~~~~~ve~TayaLlall 493 (915)
T 2hr0_B 415 NSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWED-PGKQLYNVEATSYALLALL 493 (915)
T ss_dssp TTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCC-SSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCC-CCCCccchHHHHHHHHHHH
Confidence 124567888898876543 121 221 1111 14456788888888
Q ss_pred HhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000 232 LINEADRLDLDALIGWVVFRQGVEGGFQG 260 (362)
Q Consensus 232 llg~~~~~d~~~l~~WL~~rQ~~eGGF~G 260 (362)
..+.. ....+.++||.++|..+|||..
T Consensus 494 ~~~~~--~~~~~~v~wL~~qq~~~Ggw~S 520 (915)
T 2hr0_B 494 QLKDF--DFVPPVVRWLNEQRYYGGGYGS 520 (915)
T ss_dssp HTTCT--TTHHHHHHHHHTCCCSSSSCCS
T ss_pred hcCCh--hhHHHHHHHHHhcccCCCCccc
Confidence 87764 3578999999999999999974
No 22
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.82 E-value=4.7e-08 Score=111.24 Aligned_cols=218 Identities=13% Similarity=0.128 Sum_probs=132.3
Q ss_pred ccCCCCCceeccCChhHHHHHHHHHHHHhCCCCCHHhH-------HHHHHHHhhccCCCCCCCCCCC----CCCchhhhH
Q 018000 57 LQQLGPSFCSLDANRPWICYWILHSMALLGEFVDADLE-------DRTIEFLSRCQDPNGGYGGGPG----QMPHLATTY 125 (362)
Q Consensus 57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~~~~~-------~~~i~~l~~~Q~~dGGFgg~pg----~~shl~~Ty 125 (362)
|.+.|.+-...-.++..-.-+++.-|.-.+. ++++.+ ++.+++++.+|++||||+..++ ..++...|.
T Consensus 942 L~~yPyGC~EQ~ms~~~P~l~~~~yL~~t~q-~~~~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTA 1020 (1451)
T 4acq_A 942 LLQMPYGCGEXNMVLFAPNIYVLDYLNETQQ-LTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTA 1020 (1451)
T ss_dssp GCCCCCSSTTTTHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHH
T ss_pred HHhCCCCchhhhhhhhhhHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHH
Confidence 4445544333333444444445555554554 554443 4567889999999999997653 468889999
Q ss_pred HHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeecc--------CCC-cccchHHHHHHHHHHh--ccC-CHHHH
Q 018000 126 AAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHD--------AGE-IDVRACYTAISVASIL--NIL-DDELL 193 (362)
Q Consensus 126 ~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~--------~ge-~D~r~~Y~al~~~~LL--~~~-~~~~~ 193 (362)
+++..|.........+.--..++++||.+.|++||+|.... +|. .++ .-.|.++.+|+ +.. ....+
T Consensus 1021 yv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~--~lTAyvl~aL~~~g~~~~~~~i 1098 (1451)
T 4acq_A 1021 FVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEV--TLSAYITIALLEIPLTVTHPVV 1098 (1451)
T ss_dssp HHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHH--HHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCCc--cchHHHHHHHHHcCCCCCCHHH
Confidence 99999998874322233335688999999999999998421 221 233 12233323332 221 22446
Q ss_pred HHHHHHHHhc------------------------------------------cCCCCC---cCCCCC------------C
Q 018000 194 QNVGNYILSC------------------------------------------QTYEGG---IAGEPG------------S 216 (362)
Q Consensus 194 ~~~~~yI~sc------------------------------------------Q~~dGG---Fg~~pg------------~ 216 (362)
+++++||.++ -..+|| |+.... .
T Consensus 1099 ~~A~~~L~~~~~~~~~~~~~~~~y~~AllAyAlal~g~~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~ 1178 (1451)
T 4acq_A 1099 RNALFCLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQA 1178 (1451)
T ss_dssp HHHHHHHHHHHHHHTSSCSSSTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCT
T ss_pred HHHHHHHHHhhhhcccccccCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCC
Confidence 6666666654 112455 432211 0
Q ss_pred -CCchhHhHHHHHHHHHhccC----CcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHHH
Q 018000 217 -EAHGGYTFCGLAAMILINEA----DRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALL 281 (362)
Q Consensus 217 -esh~~~TfcALaaL~llg~~----~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~ll 281 (362)
.+....|.+||.+|..++.. +.....+.++||.+.|...|||..- -|+....-+++-+...
T Consensus 1179 ~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~Ggf~ST----QdTv~aL~ALa~Y~~~ 1244 (1451)
T 4acq_A 1179 PSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSST----QDTVVALHALSKYGAA 1244 (1451)
T ss_dssp TGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTSCCSSH----HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCCCcccH----HHHHHHHHHHHHHHHh
Confidence 12456788999888877632 2234678999999999999999743 2666666666655554
No 23
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.69 E-value=3.7e-07 Score=89.59 Aligned_cols=168 Identities=15% Similarity=0.160 Sum_probs=106.1
Q ss_pred ccCCCCCceecc--CChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCCCCC------------CCCc
Q 018000 57 LQQLGPSFCSLD--ANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGGPG------------QMPH 120 (362)
Q Consensus 57 l~~l~~~~~~lD--~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg------------~~sh 120 (362)
+++-+|+|..-+ ...+|++-+++.+|..++. .+++...+++++||.+.|++||+|.+... ..+.
T Consensus 103 ~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~~~~~ 182 (367)
T 1hzf_A 103 FRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDET 182 (367)
T ss_dssp TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSSTTHH
T ss_pred ccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCCCccc
Confidence 345688886543 3678999999999988873 46677889999999999999999986421 1233
Q ss_pred hhhhHHHHHHHHHcCCC--CCC-------ChhhHHHHHHHHHhc--CC--------------------------------
Q 018000 121 LATTYAAVNALISLGGE--KSL-------PSINRSKVYTFLKCM--KD-------------------------------- 157 (362)
Q Consensus 121 l~~Ty~Av~sL~ilg~~--~~l-------~~idr~~~~~fL~s~--Q~-------------------------------- 157 (362)
+..|.+++.+|...+.. ... .....++.++||.+. ++
T Consensus 183 ~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~ 262 (367)
T 1hzf_A 183 VALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVAHNNLM 262 (367)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 66778888888765421 000 001235677888654 21
Q ss_pred ----CCCc--eeeccC----------------------CC-cccchHHHHHHHHHHhcc-CCHHHHHHHHHHHHhccCCC
Q 018000 158 ----PSGA--FRMHDA----------------------GE-IDVRACYTAISVASILNI-LDDELLQNVGNYILSCQTYE 207 (362)
Q Consensus 158 ----~dGg--F~~~~~----------------------ge-~D~r~~Y~al~~~~LL~~-~~~~~~~~~~~yI~scQ~~d 207 (362)
.+|+ |-.... +. .++..+ +++++.++.. .+.+...++++||.+.|+++
T Consensus 263 ~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~T--AyaLLall~~~~~~~~~~~iv~WL~~qrn~~ 340 (367)
T 1hzf_A 263 AMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETT--AYALLHLLLHEGKAEMADQASAWLTRQGSFQ 340 (367)
T ss_dssp TTCEECSSCEECC------------------------CCCHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTST
T ss_pred HHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHH--HHHHHHHHhccCchhhhHHHHHHHHhCcCCC
Confidence 1232 111110 00 123222 3444444432 23466889999999999999
Q ss_pred CCcCCCCCCCCchhHhHHHHHHHHHh
Q 018000 208 GGIAGEPGSEAHGGYTFCGLAAMILI 233 (362)
Q Consensus 208 GGFg~~pg~esh~~~TfcALaaL~ll 233 (362)
|||+. --.|..||-||+..
T Consensus 341 Ggw~s-------TqdTvvAL~AL~~y 359 (367)
T 1hzf_A 341 GGFRS-------TQDTVIALDALSAY 359 (367)
T ss_dssp TCSCS-------HHHHHHHHHHHHHH
T ss_pred CCccc-------HHHHHHHHHHHHHH
Confidence 99974 25677888777653
No 24
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.32 E-value=3.8e-05 Score=82.01 Aligned_cols=106 Identities=8% Similarity=0.024 Sum_probs=76.1
Q ss_pred CCCCCceeccCChhHHHHHHHHHHHHhCCC--CCHHhHHHH-------HHHHhhccCCCCCCCCCCCCCCchhhhHHHHH
Q 018000 59 QLGPSFCSLDANRPWICYWILHSMALLGEF--VDADLEDRT-------IEFLSRCQDPNGGYGGGPGQMPHLATTYAAVN 129 (362)
Q Consensus 59 ~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~-------i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~ 129 (362)
..|.+-...-.++..-..|++.-|...+.. ++++.++++ ++-+++.|++||||+..++..++...|.+++-
T Consensus 326 ~~P~GC~EQ~ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~ 405 (767)
T 4fxk_B 326 RLPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLK 405 (767)
T ss_dssp SCCCCSTTGGGGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHH
T ss_pred hccccchhhHHHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHH
Confidence 455544444456666677888888777652 333444444 44467899999999998888899999999999
Q ss_pred HHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceee
Q 018000 130 ALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRM 164 (362)
Q Consensus 130 sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~ 164 (362)
+|......-..+.-.....++||.+.|.+||+|..
T Consensus 406 ~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e 440 (767)
T 4fxk_B 406 VLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQD 440 (767)
T ss_dssp HHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred HHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchh
Confidence 99988642122222345788999999999999974
No 25
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.28 E-value=2.3e-06 Score=84.91 Aligned_cols=163 Identities=13% Similarity=0.163 Sum_probs=93.2
Q ss_pred hHHHHHHHHhhccCCCCCCCCCCC--------------------------------------CCCchhhhHHHHHHHHHc
Q 018000 93 LEDRTIEFLSRCQDPNGGYGGGPG--------------------------------------QMPHLATTYAAVNALISL 134 (362)
Q Consensus 93 ~~~~~i~~l~~~Q~~dGGFgg~pg--------------------------------------~~shl~~Ty~Av~sL~il 134 (362)
..+++.+.|+..|.++|||.-... .......|..++.+|..+
T Consensus 82 ~A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv 161 (408)
T 1r76_A 82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV 161 (408)
T ss_dssp HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHH
Confidence 457899999999999999965211 012234588888888775
Q ss_pred CCC-C--CCChh--hHHHHHHHHHhcCCCCCceeeccC--CC-------c-ccchHHHHHHHHHHhcc-------CC---
Q 018000 135 GGE-K--SLPSI--NRSKVYTFLKCMKDPSGAFRMHDA--GE-------I-DVRACYTAISVASILNI-------LD--- 189 (362)
Q Consensus 135 g~~-~--~l~~i--dr~~~~~fL~s~Q~~dGgF~~~~~--ge-------~-D~r~~Y~al~~~~LL~~-------~~--- 189 (362)
... . .-... -..+.++||+.+|.++|||.-..- +. . |+ +--++.++..++. ++
T Consensus 162 ~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDv--t~rvle~L~~~~~~~~~~~~~~~~~ 239 (408)
T 1r76_A 162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDA--LVHVAELLSDIAAGRDGFGFVPPAI 239 (408)
T ss_dssp HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGH--HHHHHHHHHHHHHTCTTCTTSCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHH--HHHHHHHHHHHHhccCcccccchhh
Confidence 321 0 00010 125789999999999999964311 00 1 22 2222222322222 11
Q ss_pred ----HHHHHHHHHHHHhccCC-CCCcCCCCCCCCchhH-------------hHHHHHHH----HHhccCCcc-----cHH
Q 018000 190 ----DELLQNVGNYILSCQTY-EGGIAGEPGSEAHGGY-------------TFCGLAAM----ILINEADRL-----DLD 242 (362)
Q Consensus 190 ----~~~~~~~~~yI~scQ~~-dGGFg~~pg~esh~~~-------------TfcALaaL----~llg~~~~~-----d~~ 242 (362)
...++++++||+++|-. ||.+-.. +--|..- +.+++.+. .||+....- -++
T Consensus 240 ~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rW--g~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~ 317 (408)
T 1r76_A 240 RTRALEATNAAIHCIVETQVVQDGKRLGW--GQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIR 317 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEETTEECCC--CSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccCCcccch--hcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHH
Confidence 24578999999999999 8875421 1111111 11222222 334433221 279
Q ss_pred HHHHHHHhCCCCCCccc
Q 018000 243 ALIGWVVFRQGVEGGFQ 259 (362)
Q Consensus 243 ~l~~WL~~rQ~~eGGF~ 259 (362)
++++||.+.|.++|||.
T Consensus 318 ~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 318 GGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHHHHSCCCC----
T ss_pred HHHHHHHHhhcCCCcee
Confidence 99999999999999987
No 26
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.19 E-value=4.2e-05 Score=88.23 Aligned_cols=199 Identities=15% Similarity=0.166 Sum_probs=118.0
Q ss_pred ccCCCCCceeccCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHH-------HhhccCCCCCCCCCCCCCCchhhhHHH
Q 018000 57 LQQLGPSFCSLDANRPWICYWILHSMALLGEF--VDADLEDRTIEF-------LSRCQDPNGGYGGGPGQMPHLATTYAA 127 (362)
Q Consensus 57 l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~-------l~~~Q~~dGGFgg~pg~~shl~~Ty~A 127 (362)
|...|.+-...-.++..-..+++.-|...+.. +.++.+++++++ ++..|++||||+..++..++...|.++
T Consensus 1002 L~~~PyGC~EQ~~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv 1081 (1661)
T 2b39_A 1002 LIQTPSGCGEQNMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYV 1081 (1661)
T ss_dssp SSSSCCCSTTGGGGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHH
T ss_pred HhhcCCCchhhhhhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHH
Confidence 44456443333456655555666666666541 223444455544 568999999999988888999999999
Q ss_pred HHHHHHcCCCCCCChhhHHHHHHHHHh-cCCCCCceeecc--------CCC-----cccchHHHHHHHHHHhcc------
Q 018000 128 VNALISLGGEKSLPSINRSKVYTFLKC-MKDPSGAFRMHD--------AGE-----IDVRACYTAISVASILNI------ 187 (362)
Q Consensus 128 v~sL~ilg~~~~l~~idr~~~~~fL~s-~Q~~dGgF~~~~--------~ge-----~D~r~~Y~al~~~~LL~~------ 187 (362)
+..|..+...-..+.--..++++||.+ .|+++|+|.... +|. .++ .+.|.++.+|+..
T Consensus 1082 ~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~--~ltAyvl~aL~~~~~~~~~ 1159 (1661)
T 2b39_A 1082 VKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDV--SLTAFVLIALHEAKDICEA 1159 (1661)
T ss_dssp HHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSH--HHHHHHHHHHHHTTTTTTT
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCcc--ccHHHHHHHHHhccccccc
Confidence 999998864212222224678999995 999999996421 111 133 3344444444322
Q ss_pred -C--CHHHHHHHHHHHHhccC---------------------------------CCCC-cCCCCCC-CCchhHhHHHHHH
Q 018000 188 -L--DDELLQNVGNYILSCQT---------------------------------YEGG-IAGEPGS-EAHGGYTFCGLAA 229 (362)
Q Consensus 188 -~--~~~~~~~~~~yI~scQ~---------------------------------~dGG-Fg~~pg~-esh~~~TfcALaa 229 (362)
. ....+.++.+||.+... .+|. |. .++. ......|.+||.+
T Consensus 1160 ~~~~~~~~i~~a~~yL~~~~~~~~~~y~~A~layAL~l~g~~a~~~l~~L~~~~~~~~~W~-~~~~~~~~vE~tayaLla 1238 (1661)
T 2b39_A 1160 QVNSLGRSIAKAGDFLENHYRELRRPYTVAIAAYALALLGKLEGDRLTKFLNTAKEKNRWE-EPNQKLYNVEATSYALLA 1238 (1661)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCC-CSSCHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCCcHHHHHHHHHhhccCCCCCC-CCCCCcchHHHHHHHHHH
Confidence 1 11234445555543211 0121 21 1111 1133467778888
Q ss_pred HHHhccCCcccHHHHHHHHHhCCCCCCcccC
Q 018000 230 MILINEADRLDLDALIGWVVFRQGVEGGFQG 260 (362)
Q Consensus 230 L~llg~~~~~d~~~l~~WL~~rQ~~eGGF~G 260 (362)
|...+... .....++||.+.|...|||..
T Consensus 1239 ll~~~~~~--~~~~iv~wL~~qr~~~gg~~S 1267 (1661)
T 2b39_A 1239 LLARKDYD--TTPPVVRWLNEQRYYGGGYGS 1267 (1661)
T ss_dssp HHHHTCTT--TSHHHHHHHHHCCTBTTBBCS
T ss_pred HHhcCChh--hHHHHHHHHHhcccCCCCccc
Confidence 77776543 367889999998888899975
No 27
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.07 E-value=3.1e-05 Score=84.49 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=104.7
Q ss_pred cCCCCCceec--cCChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhh-ccCCCCCCCCCCCC-------------CC
Q 018000 58 QQLGPSFCSL--DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSR-CQDPNGGYGGGPGQ-------------MP 119 (362)
Q Consensus 58 ~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~-~Q~~dGGFgg~pg~-------------~s 119 (362)
++-+|+|..- +.+.+|++=+++..|..+.. .+++...+++++||.+ .|.++|.|.+.... .+
T Consensus 312 Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~ 391 (915)
T 2hr0_B 312 RQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEK 391 (915)
T ss_dssp CCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTH
T ss_pred hcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCcccc
Confidence 4568888753 34568999999999888763 3677788999999995 99999999642110 13
Q ss_pred chhhhHHHHHHHHHcCCCC--CCChh--hHHHHHHHHHhcCCC---------------------------------CCce
Q 018000 120 HLATTYAAVNALISLGGEK--SLPSI--NRSKVYTFLKCMKDP---------------------------------SGAF 162 (362)
Q Consensus 120 hl~~Ty~Av~sL~ilg~~~--~l~~i--dr~~~~~fL~s~Q~~---------------------------------dGgF 162 (362)
.+..|.+++.+|...|... .+... ...++++||.+.+.. +|.|
T Consensus 392 ~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~ 471 (915)
T 2hr0_B 392 DMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNR 471 (915)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTB
T ss_pred ccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCC
Confidence 4566777888887775310 11111 234677888775432 1221
Q ss_pred eeccCCC-cccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHh
Q 018000 163 RMHDAGE-IDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILI 233 (362)
Q Consensus 163 ~~~~~ge-~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~ll 233 (362)
....++. .+++.+ +++++.++.........+++.||.+.|+.+|||... -.|..||-||+..
T Consensus 472 w~~~~~~~~~ve~T--ayaLlall~~~~~~~~~~~v~wL~~qq~~~Ggw~ST-------QdT~~Al~AL~~y 534 (915)
T 2hr0_B 472 WEDPGKQLYNVEAT--SYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGST-------QATFMVFQALAQY 534 (915)
T ss_dssp CCCSSCHHHHHHHH--HHHHHHHHHTTCTTTHHHHHHHHHTCCCSSSSCCSH-------HHHHHHHHHHHHH
T ss_pred CCCCCCCccchHHH--HHHHHHHHhcCChhhHHHHHHHHHhcccCCCCccch-------hhHHHHHHHHHHH
Confidence 1111110 133333 344444443333345788999999999999999742 4577777777654
No 28
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.06 E-value=2.8e-05 Score=87.84 Aligned_cols=179 Identities=17% Similarity=0.154 Sum_probs=109.4
Q ss_pred HHHHHHHHHHh------ccCCCCCceec--cCChhHHHHHHHHHHHHhC---CCCCHHhHHHHHHHHhhccCCCCCCCCC
Q 018000 46 RKNHVEYLLRG------LQQLGPSFCSL--DANRPWICYWILHSMALLG---EFVDADLEDRTIEFLSRCQDPNGGYGGG 114 (362)
Q Consensus 46 r~~H~~yl~~~------l~~l~~~~~~l--D~sr~w~~Yw~l~sL~lLg---~~~~~~~~~~~i~~l~~~Q~~dGGFgg~ 114 (362)
+++-.+++.+. +++-+|+|..- +.+.+|++-+++.+|..+. ..+++...+++++||.+.|.+||.|-+.
T Consensus 867 ~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 867 IDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp HHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCcccc
Confidence 45556666443 34557887643 4467899999999999874 3477788899999999999999998653
Q ss_pred CC---------CCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCC-CCceeec-------------------
Q 018000 115 PG---------QMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDP-SGAFRMH------------------- 165 (362)
Q Consensus 115 pg---------~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~-dGgF~~~------------------- 165 (362)
.. .....+.|.+++.+|.-.|....-.....+++++||.+.+.. +++|...
T Consensus 947 ~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~ 1026 (1325)
T 2pn5_A 947 GAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALN 1026 (1325)
T ss_dssp SCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHH
T ss_pred ccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHH
Confidence 11 112344444444444332210000012345677888876554 4544211
Q ss_pred ----------------cCCCcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHH
Q 018000 166 ----------------DAGEIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAA 229 (362)
Q Consensus 166 ----------------~~ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaa 229 (362)
+....+++.+ |+++++++.........+++.||++.|+.+|||.. --.|..||-|
T Consensus 1027 ~L~~~~~~~~~~~~~~w~~~s~ve~t--A~aLlall~~~~~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T~~aL~A 1097 (1325)
T 2pn5_A 1027 KLIDMSFIDADKNERFWNTTNPIETT--AYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFPS-------TQDTFVGLKA 1097 (1325)
T ss_dssp HHHHTCEEETTTTEEECCSSSHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTSSCSS-------HHHHHHHHHH
T ss_pred HHHhhhhhccCCCcccCCCCCchHHH--HHHHHHHhhhccchhhHHHHHHHHhccCCCCCccc-------hHHHHHHHHH
Confidence 0011233332 45555555544455678899999999999999973 2456777777
Q ss_pred HHHh
Q 018000 230 MILI 233 (362)
Q Consensus 230 L~ll 233 (362)
|...
T Consensus 1098 L~~y 1101 (1325)
T 2pn5_A 1098 LTKM 1101 (1325)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 29
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=97.91 E-value=3.4e-05 Score=76.55 Aligned_cols=118 Identities=11% Similarity=0.077 Sum_probs=72.7
Q ss_pred hHHHHHHHHhhccCCCCCCCCC-CCC---CCch----hhhHHHHHHHHHcCCC-CCCChhh----------HHHHHHHHH
Q 018000 93 LEDRTIEFLSRCQDPNGGYGGG-PGQ---MPHL----ATTYAAVNALISLGGE-KSLPSIN----------RSKVYTFLK 153 (362)
Q Consensus 93 ~~~~~i~~l~~~Q~~dGGFgg~-pg~---~shl----~~Ty~Av~sL~ilg~~-~~l~~id----------r~~~~~fL~ 153 (362)
-..|.++||+.+|+++|||+.. |.. ..|+ -.|--.+..|..++.. ..+..++ .++.++||+
T Consensus 176 Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll 255 (408)
T 1r76_A 176 AALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIV 255 (408)
T ss_dssp HHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHH
Confidence 4568999999999999999864 211 1111 1344556666665431 1122222 257899999
Q ss_pred hcCCC-CCceeeccC-----CC-----------cccchHHHHHHHHHHhccCCH-----HHHHHHHHHHHhccCCCCCcC
Q 018000 154 CMKDP-SGAFRMHDA-----GE-----------IDVRACYTAISVASILNILDD-----ELLQNVGNYILSCQTYEGGIA 211 (362)
Q Consensus 154 s~Q~~-dGgF~~~~~-----ge-----------~D~r~~Y~al~~~~LL~~~~~-----~~~~~~~~yI~scQ~~dGGFg 211 (362)
+.|.+ ||+|. ..+ |. .-+.+.=+++.+..|+....+ ..++++++||.++|+.||||-
T Consensus 256 ~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 256 ETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC----
T ss_pred HhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCcee
Confidence 99999 99997 432 11 122233344555566665432 258899999999999999986
No 30
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.87 E-value=1.4e-05 Score=79.58 Aligned_cols=115 Identities=15% Similarity=-0.013 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCC-------HHHHHHHH-
Q 018000 126 AAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD-------DELLQNVG- 197 (362)
Q Consensus 126 ~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~-------~~~~~~~~- 197 (362)
.+|.||+..|.+ + ++..++.|...+. +++|.....-.+|+ .|+++++|..+.. ...+++++
T Consensus 141 L~vLALC~~g~~-----v-~~~~v~~Ll~~~~-~~~~~~g~~~sVDT----~AMA~lAL~C~~~~~~~~~~~~~i~~al~ 209 (414)
T 2bb6_A 141 LGILALCVHQKR-----V-HDSVVGKLLYAVE-HKPHLLQDHVSVDT----MAMAGMAFSCLELSNLNPKQRNRINLALK 209 (414)
T ss_dssp HHHHHHHHTTCC-----C-CHHHHHHHHHHHH-SSSCSCCTTTHHHH----HHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCC-----c-cHHHHHHHHHHhh-ccCcCCCCcccccH----HHHHHHHHHHHhhcCCCcchHHHHHHHHH
Confidence 567788888753 2 2345555555554 34554222223454 4555555432211 23355555
Q ss_pred ---HHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccCCc---ccHHHHHHHHHhCCCCCCccc
Q 018000 198 ---NYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEADR---LDLDALIGWVVFRQGVEGGFQ 259 (362)
Q Consensus 198 ---~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~~~---~d~~~l~~WL~~rQ~~eGGF~ 259 (362)
++|++-|+.||+|| +...|..|+.||...+.... .+..++++||.+ |..+|+|+
T Consensus 210 ~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 210 RVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred HHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence 88889999999997 24558899999988887543 367789999998 99999997
No 31
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.80 E-value=2.9e-06 Score=97.57 Aligned_cols=211 Identities=13% Similarity=0.123 Sum_probs=0.0
Q ss_pred CCCCceeccCChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHH-------HhhccCCCCCCCCCCCCCCchhhhHHHHHH
Q 018000 60 LGPSFCSLDANRPWICYWILHSMALLGEF--VDADLEDRTIEF-------LSRCQDPNGGYGGGPGQMPHLATTYAAVNA 130 (362)
Q Consensus 60 l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~-------l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~s 130 (362)
+|.+-...-.++..-..+++.-|+..+.. +.++.+++++++ ++++|++||||+...+..++.+-|.+++-+
T Consensus 989 ~PyGCgEQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~ 1068 (1642)
T 3prx_B 989 TPSGCGEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKV 1068 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHH
Confidence 45443333344444444444444444331 113344555554 567999999999876677888899999988
Q ss_pred HHHcCCCCCCChhh---HHHHHHHHHh-cCCCCCceeecc--------CC----CcccchHHHHHHHHHHhccCC-----
Q 018000 131 LISLGGEKSLPSIN---RSKVYTFLKC-MKDPSGAFRMHD--------AG----EIDVRACYTAISVASILNILD----- 189 (362)
Q Consensus 131 L~ilg~~~~l~~id---r~~~~~fL~s-~Q~~dGgF~~~~--------~g----e~D~r~~Y~al~~~~LL~~~~----- 189 (362)
|...... ...|| ..++++||.+ .|++||+|.... +| +.++ +-+|.++.+|+....
T Consensus 1069 f~~A~~~--i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~--~lTA~vliaL~e~~~~~~~~ 1144 (1642)
T 3prx_B 1069 FAMAAKM--VAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEV--YLTAFILVALLESKTICNDY 1144 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhh--ccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcc--cchHHHHHHHHhcccccccc
Confidence 8876531 11133 3578999998 899999996421 22 2233 445555555543211
Q ss_pred ----HHHHHHHHHHHHhccC-----CC-------------------------CCcCC-CCCC-CCchhHhHHHHHHHHHh
Q 018000 190 ----DELLQNVGNYILSCQT-----YE-------------------------GGIAG-EPGS-EAHGGYTFCGLAAMILI 233 (362)
Q Consensus 190 ----~~~~~~~~~yI~scQ~-----~d-------------------------GGFg~-~pg~-esh~~~TfcALaaL~ll 233 (362)
...++++..||.+.-. |. |+.-+ .|+. ......|.+||.|+..+
T Consensus 1145 ~~~~~~~i~~a~~~L~~~~~~~~~~Y~~Ai~aYAl~l~~~~~~~~l~~l~~~~~~~W~~~~~~~~~VE~TaYaLLa~l~~ 1224 (1642)
T 3prx_B 1145 VNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQLNDDRVLMAASTGRDHWEEYNAHTHNIEGTSYALLALLKM 1224 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHhcc
Confidence 1235566666653210 00 11000 1111 12456788888887766
Q ss_pred ccCCcccHHHHHHHHHhCCCCCCcccCCCCCCCcccccchHHHHHHH
Q 018000 234 NEADRLDLDALIGWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFAL 280 (362)
Q Consensus 234 g~~~~~d~~~l~~WL~~rQ~~eGGF~GR~nKlvD~CYsfW~~a~l~l 280 (362)
+. .......++||.+.|+..|||..- -|++=..-+++-+..
T Consensus 1225 ~~--~~~a~~iv~WL~~qr~~~Ggf~ST----QdTvvaLqALa~Y~~ 1265 (1642)
T 3prx_B 1225 KK--FDQTGPIVRWLTDQNFYGETYGQT----QATVMAFQALAEYEI 1265 (1642)
T ss_dssp -----------------------------------------------
T ss_pred Cc--hhhHHHHHHHHHHhccCCCcccCc----HHHHHHHHHHHHHHH
Confidence 53 235688999999999999999853 244444444444433
No 32
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.80 E-value=0.00015 Score=72.28 Aligned_cols=133 Identities=11% Similarity=-0.021 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhCCCCCHHhHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCC----ChhhH--HHH
Q 018000 75 CYWILHSMALLGEFVDADLEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSL----PSINR--SKV 148 (362)
Q Consensus 75 ~Yw~l~sL~lLg~~~~~~~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l----~~idr--~~~ 148 (362)
.=|.+-+|.+-|..+++ +.+..+...|. +++|.-+ ....+-+|..|+++|..++..... ..|++ +.+
T Consensus 139 ~sL~vLALC~~g~~v~~----~~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l 211 (414)
T 2bb6_A 139 YSLGILALCVHQKRVHD----SVVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRV 211 (414)
T ss_dssp HHHHHHHHHHTTCCCCH----HHHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccH----HHHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Confidence 34666667777877654 45555555454 4566522 245789999999999999752111 11322 345
Q ss_pred HHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhc--cCCH---HHHHHHHHHHHhccCCCCCcCCCCCCCCchhHh
Q 018000 149 YTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN--ILDD---ELLQNVGNYILSCQTYEGGIAGEPGSEAHGGYT 223 (362)
Q Consensus 149 ~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~--~~~~---~~~~~~~~yI~scQ~~dGGFg~~pg~esh~~~T 223 (362)
+++|.+.|++||+|. ++.+ +++++-.|+. .... ....++.++|++ |..||+|+ .+..|
T Consensus 212 ~~~l~~~Q~~dG~FG-------N~~S--T~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~at 274 (414)
T 2bb6_A 212 QEKILKAQTPEGYFG-------NVYS--TPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMI 274 (414)
T ss_dssp HHHHHHTBCTTSCBS-------STTT--HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHH
T ss_pred HHHHHHhhcCCCCcc-------chhh--HHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHH
Confidence 688899999999994 3433 4555555543 3222 367789999999 99999997 34566
Q ss_pred HHHHHHHH
Q 018000 224 FCGLAAMI 231 (362)
Q Consensus 224 fcALaaL~ 231 (362)
.-+|-+|.
T Consensus 275 aQ~lpaL~ 282 (414)
T 2bb6_A 275 SQLLPVLN 282 (414)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 66665544
No 33
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.79 E-value=5.3e-06 Score=80.19 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=91.5
Q ss_pred HHHHHhhccCCCCCCCCCC-------------CCCCchhhhHHHHHHHHHcCCCCCCChh--hHHHHHHHHHhcCCCCCc
Q 018000 97 TIEFLSRCQDPNGGYGGGP-------------GQMPHLATTYAAVNALISLGGEKSLPSI--NRSKVYTFLKCMKDPSGA 161 (362)
Q Consensus 97 ~i~~l~~~Q~~dGGFgg~p-------------g~~shl~~Ty~Av~sL~ilg~~~~l~~i--dr~~~~~fL~s~Q~~dGg 161 (362)
+.+.|+..|+++|||.-.. ...+....|..++.+|+-+.....-... -.++.++||+.+|.++||
T Consensus 36 ~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGG 115 (332)
T 1gxm_A 36 RADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGA 115 (332)
T ss_dssp GHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCC
Confidence 4778889999999997631 1235666799999999776321000010 125789999999999999
Q ss_pred eeecc-C-CC-------c-ccchHHHHHHHHHHhcc----C------------CHHHHHHHHHHHHhccCCCCCcCCCCC
Q 018000 162 FRMHD-A-GE-------I-DVRACYTAISVASILNI----L------------DDELLQNVGNYILSCQTYEGGIAGEPG 215 (362)
Q Consensus 162 F~~~~-~-ge-------~-D~r~~Y~al~~~~LL~~----~------------~~~~~~~~~~yI~scQ~~dGGFg~~pg 215 (362)
|.... . +. . |+ +--++-++..++. . ....++++++||+++|-.+||+-+. .
T Consensus 116 WpqFdpd~~~Yl~~IpFnDDv--tarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~-W 192 (332)
T 1gxm_A 116 LPQFYPLKGGYSDHATFNDNG--MAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTV-W 192 (332)
T ss_dssp CBSEESCCSGGGGSEECGGGH--HHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECC-C
T ss_pred ccccCCCcccccccCCcchHH--HHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCe-e
Confidence 97531 1 10 1 22 2223333333321 1 1245789999999999999875432 1
Q ss_pred CCCchhHhH-------------HHHHHH----HHhccCCcc----cHHHHHHHHHhCCC
Q 018000 216 SEAHGGYTF-------------CGLAAM----ILINEADRL----DLDALIGWVVFRQG 253 (362)
Q Consensus 216 ~esh~~~Tf-------------cALaaL----~llg~~~~~----d~~~l~~WL~~rQ~ 253 (362)
+--|...|. |++.+. .+|+.+... -++++++||.+.|.
T Consensus 193 g~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 193 CAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp CSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred ccccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence 111222222 222222 234544322 27899999999997
No 34
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=97.76 E-value=0.00026 Score=80.76 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=105.2
Q ss_pred cCCCCCceec------cCChhHHHHHHHHHHHHhCC--CCCHHhHHHHHHHHhhccCCCCCCCCC-C--------CCCCc
Q 018000 58 QQLGPSFCSL------DANRPWICYWILHSMALLGE--FVDADLEDRTIEFLSRCQDPNGGYGGG-P--------GQMPH 120 (362)
Q Consensus 58 ~~l~~~~~~l------D~sr~w~~Yw~l~sL~lLg~--~~~~~~~~~~i~~l~~~Q~~dGGFgg~-p--------g~~sh 120 (362)
+.-+|+|..- +.+.+|++=+++..|..... .+++...+++++||.+.|.+||.|... + |...+
T Consensus 996 q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~ 1075 (1451)
T 4acq_A 996 KHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDE 1075 (1451)
T ss_dssp BCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCH
T ss_pred cCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCCCCC
Confidence 4567888754 24678999999999998874 467788999999999999999999731 1 11356
Q ss_pred hhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhc------------------------------------------CCC
Q 018000 121 LATTYAAVNALISLGGEKSLPSINRSKVYTFLKCM------------------------------------------KDP 158 (362)
Q Consensus 121 l~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~------------------------------------------Q~~ 158 (362)
+..|.+++.+|...|... .+ ...+++++||.+. ...
T Consensus 1076 ~~lTAyvl~aL~~~g~~~-~~-~~i~~A~~~L~~~~~~~~~~~~~~~~y~~AllAyAlal~g~~~~~~~~l~~L~~~a~~ 1153 (1451)
T 4acq_A 1076 VTLSAYITIALLEIPLTV-TH-PVVRNALFCLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEEAVK 1153 (1451)
T ss_dssp HHHHHHHHHHHHHTTCCT-TC-HHHHHHHHHHHHHHHHHTSSCSSSTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCB
T ss_pred ccchHHHHHHHHHcCCCC-CC-HHHHHHHHHHHHhhhhcccccccCChHHHHHHHHHHHhcCChhHHHHHHHHHHHHhhc
Confidence 777999999998887531 11 1234555555532 112
Q ss_pred CCceeeccCC-----------------CcccchHHHHHHHHHHhccC------CHHHHHHHHHHHHhccCCCCCcCCCCC
Q 018000 159 SGAFRMHDAG-----------------EIDVRACYTAISVASILNIL------DDELLQNVGNYILSCQTYEGGIAGEPG 215 (362)
Q Consensus 159 dGgF~~~~~g-----------------e~D~r~~Y~al~~~~LL~~~------~~~~~~~~~~yI~scQ~~dGGFg~~pg 215 (362)
+|+.. +++. ..+++. +|+++++++... +.....+++.||.+.|++.|||+..
T Consensus 1154 ~~~~~-~W~~~~~~~~~~~~~~~~~~~s~~vE~--TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~Ggf~ST-- 1228 (1451)
T 4acq_A 1154 KDNSV-HWERPQKPKAPVGHFYEPQAPSAEVEM--TSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSST-- 1228 (1451)
T ss_dssp CSSCB-CCCCCCCSSSCSSSTTCCCTTGGGGTH--HHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTSCCSSH--
T ss_pred cCCce-ecCCCCCCccccccccccCCchHHHHH--HHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCCCcccH--
Confidence 34421 1110 122322 344455555442 1235678999999999999999742
Q ss_pred CCCchhHhHHHHHHHHH
Q 018000 216 SEAHGGYTFCGLAAMIL 232 (362)
Q Consensus 216 ~esh~~~TfcALaaL~l 232 (362)
-.|..||-||+-
T Consensus 1229 -----QdTv~aL~ALa~ 1240 (1451)
T 4acq_A 1229 -----QDTVVALHALSK 1240 (1451)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHH
Confidence 356777776654
No 35
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.64 E-value=0.00046 Score=79.73 Aligned_cols=96 Identities=9% Similarity=0.010 Sum_probs=65.7
Q ss_pred CChhHHHHHHHHHHHHhCC----C-CCHHhHHHHHHH-------HhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCC
Q 018000 69 ANRPWICYWILHSMALLGE----F-VDADLEDRTIEF-------LSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGG 136 (362)
Q Consensus 69 ~sr~w~~Yw~l~sL~lLg~----~-~~~~~~~~~i~~-------l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~ 136 (362)
.++..-..+++.-|...+. . ..++.+++++++ ++..|++||||+..++..++...|.+++..|..+..
T Consensus 1012 ~s~~~P~~~~~~yL~~~~qw~~l~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~ 1091 (1676)
T 3cu7_A 1012 LMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNK 1091 (1676)
T ss_dssp HTTSHHHHHHHHHHHHTTCGGGCSSCHHHHHHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHT
T ss_pred HHhhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHh
Confidence 4554444455555555443 0 112345555555 568999999999887788999999999999988764
Q ss_pred CCCCChhhHHHHHHHHHh-cCCCCCceee
Q 018000 137 EKSLPSINRSKVYTFLKC-MKDPSGAFRM 164 (362)
Q Consensus 137 ~~~l~~idr~~~~~fL~s-~Q~~dGgF~~ 164 (362)
.-..+.--..++++||.+ .|+++|+|..
T Consensus 1092 ~~~v~~~~l~~a~~~L~~~~q~~~g~f~~ 1120 (1676)
T 3cu7_A 1092 YVEQNQNSICNSLLWLVENYQLDNGSFKE 1120 (1676)
T ss_dssp TSCCCHHHHHHHHHHHHHHSBCTTSCBCC
T ss_pred cccCCHHHHHHHHHHHHHhhCCCCCcccC
Confidence 212222224678999999 9999999964
No 36
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.52 E-value=0.00012 Score=72.52 Aligned_cols=110 Identities=13% Similarity=0.083 Sum_probs=77.5
Q ss_pred HHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhccCC--------------HHH
Q 018000 127 AVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILNILD--------------DEL 192 (362)
Q Consensus 127 Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~~~~--------------~~~ 192 (362)
+++||+..+. .+ +...++-|...++.+|+ .-.+|+ .|+++++|..+.. ...
T Consensus 120 ~vLALC~~~~-----~v-~~~~v~kLl~~~~~~g~-----~~sVDT----~AMa~LAL~C~~~~~~~~~~~~~~~~i~~a 184 (399)
T 2pmv_A 120 AILALCQKNS-----EA-TLPIAVRFAKTLLANSS-----PFNVDT----GAMATLALTCMYNKIPVGSEEGYRSLFGQV 184 (399)
T ss_dssp HHHHHHHHCH-----HH-HHHHHHHHHHHHHHCCS-----CCCHHH----HHHHHHHHHHHHTBCCTTCCSSHHHHHHHH
T ss_pred HHHHHHhcCC-----CC-CHHHHHHHHHHHHccCC-----cccchH----HHHHHHHHHHHhhccccccchhhHHHHHHH
Confidence 5666666663 23 34555555555555642 124565 5666666543211 245
Q ss_pred HHHHHHHHHhccCCCCCcCCCCCCCCchhHhHHHHHHHHHhccC--CcccHHHHHHHHHhCCCCCCccc
Q 018000 193 LQNVGNYILSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILINEA--DRLDLDALIGWVVFRQGVEGGFQ 259 (362)
Q Consensus 193 ~~~~~~yI~scQ~~dGGFg~~pg~esh~~~TfcALaaL~llg~~--~~~d~~~l~~WL~~rQ~~eGGF~ 259 (362)
+++++++|++-|+.||+|| +...|--|+.||...+.. ...+..+.++||.. |..+|+|+
T Consensus 185 i~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 185 LKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred HHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC
Confidence 7789999999999999997 578899999999999873 23478999999998 88999997
No 37
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=97.51 E-value=6.9e-05 Score=72.44 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=81.7
Q ss_pred HHHHHHHhcCCCCCceeecc-------------CCCcccchHHHHHHHHHHhccC--C---HHHHHHHHHHHHhccCCCC
Q 018000 147 KVYTFLKCMKDPSGAFRMHD-------------AGEIDVRACYTAISVASILNIL--D---DELLQNVGNYILSCQTYEG 208 (362)
Q Consensus 147 ~~~~fL~s~Q~~dGgF~~~~-------------~ge~D~r~~Y~al~~~~LL~~~--~---~~~~~~~~~yI~scQ~~dG 208 (362)
++.+-|+..|.++|||.... ..-.|...|..++..+.-+... . ...++++++||++.|..+|
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 35788889999999997531 1225665666655544322211 1 2567899999999999999
Q ss_pred CcCCC-CCCC-Cch------hHhHHHHHHHHHhccC----------------CcccHHHHHHHHHhCCCCCCcccCC--C
Q 018000 209 GIAGE-PGSE-AHG------GYTFCGLAAMILINEA----------------DRLDLDALIGWVVFRQGVEGGFQGR--T 262 (362)
Q Consensus 209 GFg~~-pg~e-sh~------~~TfcALaaL~llg~~----------------~~~d~~~l~~WL~~rQ~~eGGF~GR--~ 262 (362)
||+.. |... -|. .-|.-.|-.|..++.. ...-++++++||+..|.++||+.|| .
T Consensus 115 GWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~ 194 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA 194 (332)
T ss_dssp CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred CccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeecc
Confidence 99975 3221 011 2344566666666421 1123689999999999999999998 5
Q ss_pred CCCCcccc
Q 018000 263 NKLVDGCY 270 (362)
Q Consensus 263 nKlvD~CY 270 (362)
|....+.-
T Consensus 195 qydygT~~ 202 (332)
T 1gxm_A 195 QHGALDYQ 202 (332)
T ss_dssp EECTTTCC
T ss_pred cccccccc
Confidence 55555565
No 38
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=96.60 E-value=0.015 Score=61.99 Aligned_cols=135 Identities=18% Similarity=0.127 Sum_probs=80.5
Q ss_pred CCCchhhhHHHHHHHHHcCCCCCCChhhHHH-------HHHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHhc---
Q 018000 117 QMPHLATTYAAVNALISLGGEKSLPSINRSK-------VYTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASILN--- 186 (362)
Q Consensus 117 ~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~-------~~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL~--- 186 (362)
..+.++++..+...|...+....+..--+++ .+.=+.+.|++||||....++..++.-|-.++-++....
T Consensus 335 ~ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i 414 (767)
T 4fxk_B 335 TMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQV 414 (767)
T ss_dssp GGGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSS
T ss_pred HHHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhc
Confidence 4677777777777777666432232222333 445566789999999987665555432222222222222
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcCCCC------------CCCCchhHhHHHHHHHHHhccCCc------------ccHH
Q 018000 187 ILDDELLQNVGNYILSCQTYEGGIAGEP------------GSEAHGGYTFCGLAAMILINEADR------------LDLD 242 (362)
Q Consensus 187 ~~~~~~~~~~~~yI~scQ~~dGGFg~~p------------g~esh~~~TfcALaaL~llg~~~~------------~d~~ 242 (362)
..++..+.++..||++.|..+|.|.... +.+.....|.+.+.+|...+.... ..+.
T Consensus 415 ~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ 494 (767)
T 4fxk_B 415 GGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASIS 494 (767)
T ss_dssp SCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHH
Confidence 2456778899999999999999996421 112234567777777765443211 1245
Q ss_pred HHHHHHHhC
Q 018000 243 ALIGWVVFR 251 (362)
Q Consensus 243 ~l~~WL~~r 251 (362)
+++.||..+
T Consensus 495 ka~~~L~~~ 503 (767)
T 4fxk_B 495 KANSFLGEK 503 (767)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677777654
No 39
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=96.32 E-value=0.025 Score=65.35 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=80.4
Q ss_pred CCCchhhhHHHHHHHHHcCCCCCCChhhHHHH-------HHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHh---c
Q 018000 117 QMPHLATTYAAVNALISLGGEKSLPSINRSKV-------YTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---N 186 (362)
Q Consensus 117 ~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~-------~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL---~ 186 (362)
..+...+...+...|...+....+..-.++++ +.=+++.|++||||....+++.++.-|-.++-.+... .
T Consensus 1013 ~~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~ 1092 (1661)
T 2b39_A 1013 NMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLI 1092 (1661)
T ss_dssp GGGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS
T ss_pred hhhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcc
Confidence 35666666666665555543111111122334 4445578999999998776555553333333333222 2
Q ss_pred cCCHHHHHHHHHHHHh-ccCCCCCcCCCC--------C-----CCCchhHhHHHHHHHHHhccCC-------cccHHHHH
Q 018000 187 ILDDELLQNVGNYILS-CQTYEGGIAGEP--------G-----SEAHGGYTFCGLAAMILINEAD-------RLDLDALI 245 (362)
Q Consensus 187 ~~~~~~~~~~~~yI~s-cQ~~dGGFg~~p--------g-----~esh~~~TfcALaaL~llg~~~-------~~d~~~l~ 245 (362)
..+...+.++.+||.+ .|..+|.|.... | .+++...|.+++.+|.-.+... ...+.+++
T Consensus 1093 ~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~ 1172 (1661)
T 2b39_A 1093 AIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAG 1172 (1661)
T ss_dssp CCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHH
Confidence 3467788999999995 999999996421 1 1235666778888887765431 11356788
Q ss_pred HHHHhC
Q 018000 246 GWVVFR 251 (362)
Q Consensus 246 ~WL~~r 251 (362)
+||..+
T Consensus 1173 ~yL~~~ 1178 (1661)
T 2b39_A 1173 DFLENH 1178 (1661)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888654
No 40
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=95.66 E-value=0.013 Score=58.04 Aligned_cols=62 Identities=23% Similarity=0.154 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhccCCCCCCCCCCCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCcee
Q 018000 93 LEDRTIEFLSRCQDPNGGYGGGPGQMPHLATTYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFR 163 (362)
Q Consensus 93 ~~~~~i~~l~~~Q~~dGGFgg~pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~ 163 (362)
..++++.+|.+.|.+||+|| ++.+|--|+++|...+.. .-..-+..+.++||.+ |.+||+|.
T Consensus 184 ai~~~~~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~-~~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 184 VLKDIVEKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEP-SKKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HHHHHHHHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSC-CSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred HHHHHHHHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCC-ccccccHHHHHHHHHH-HhhCCCcC
Confidence 35667888999999999997 589999999999999864 2223367899999999 88999996
No 41
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=95.24 E-value=0.0032 Score=72.61 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCCCchhhhHHHHHHHHHcCCCCCCChhhHHHH-------HHHHHhcCCCCCceeeccCCCcccchHHHHHHHHHHh--
Q 018000 115 PGQMPHLATTYAAVNALISLGGEKSLPSINRSKV-------YTFLKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL-- 185 (362)
Q Consensus 115 pg~~shl~~Ty~Av~sL~ilg~~~~l~~idr~~~-------~~fL~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL-- 185 (362)
....++++++..++.-|...+....+..-.++++ +.-+++.|++||||....+++.++.-|-.++-++...
T Consensus 995 EQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~ 1074 (1642)
T 3prx_B 995 EQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAK 1074 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHh
Confidence 3446777777777666655443111111112333 4455568899999998755444443222222222211
Q ss_pred -cc-CCHHHHHHHHHHHHh-ccCCCCCcCCCC------------CCCCchhHhHHHHHHHHHhccCC-------cccHHH
Q 018000 186 -NI-LDDELLQNVGNYILS-CQTYEGGIAGEP------------GSEAHGGYTFCGLAAMILINEAD-------RLDLDA 243 (362)
Q Consensus 186 -~~-~~~~~~~~~~~yI~s-cQ~~dGGFg~~p------------g~esh~~~TfcALaaL~llg~~~-------~~d~~~ 243 (362)
.. .++..+.++++||.+ +|..||.|.... +.+.+...|.+.+.||.-.+... ...+.+
T Consensus 1075 ~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~ 1154 (1642)
T 3prx_B 1075 MVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKK 1154 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHH
Confidence 12 455678899999998 999999996431 12345556777777765544320 123577
Q ss_pred HHHHHHhC
Q 018000 244 LIGWVVFR 251 (362)
Q Consensus 244 l~~WL~~r 251 (362)
++.||.++
T Consensus 1155 a~~~L~~~ 1162 (1642)
T 3prx_B 1155 ATNYLLKK 1162 (1642)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 88888754
No 42
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=94.97 E-value=0.043 Score=63.45 Aligned_cols=83 Identities=10% Similarity=0.043 Sum_probs=53.1
Q ss_pred HHhcCCCCCceeeccCCCcccchHHHHHHHHHHh---ccCCHHHHHHHHHHHHh-ccCCCCCcCCCCC---C--------
Q 018000 152 LKCMKDPSGAFRMHDAGEIDVRACYTAISVASIL---NILDDELLQNVGNYILS-CQTYEGGIAGEPG---S-------- 216 (362)
Q Consensus 152 L~s~Q~~dGgF~~~~~ge~D~r~~Y~al~~~~LL---~~~~~~~~~~~~~yI~s-cQ~~dGGFg~~pg---~-------- 216 (362)
+++.|++||||....++..++.-|-.++-.+... ...++..+.++.+||.+ .|..+|.|..... .
T Consensus 1056 ~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~ 1135 (1676)
T 3cu7_A 1056 IMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPV 1135 (1676)
T ss_dssp GGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHH
T ss_pred HhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCccc
Confidence 4468999999998755555654333333333322 23567788999999999 9999999864211 0
Q ss_pred ---CCchhHhHHHHHHHHHhc
Q 018000 217 ---EAHGGYTFCGLAAMILIN 234 (362)
Q Consensus 217 ---esh~~~TfcALaaL~llg 234 (362)
+++...|.+++.+|.-.+
T Consensus 1136 ~~~~~~~~ltAyvl~aL~~~~ 1156 (1676)
T 3cu7_A 1136 EARENSLYLTAFTVIGIRKAF 1156 (1676)
T ss_dssp HHHHHHHHHHHHHHHHHHHTG
T ss_pred ccccCccccHHHHHHHHHhcc
Confidence 013345666777776554
No 43
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=89.64 E-value=0.42 Score=50.78 Aligned_cols=56 Identities=23% Similarity=0.191 Sum_probs=41.1
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCC--chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh
Q 018000 95 DRTIEFLSRCQDPNGGYGGGPGQMP--HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC 154 (362)
Q Consensus 95 ~~~i~~l~~~Q~~dGGFgg~pg~~s--hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s 154 (362)
...++||+..|.+||+||...+... -+.+|.+||.||..-+- ..-..++.+.||.+
T Consensus 53 p~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~----~~~~i~rGl~fl~~ 110 (727)
T 3pya_A 53 PSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNL----FPHQCNKGITFFRE 110 (727)
T ss_dssp HHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHH
Confidence 5789999999999999996422222 47899999999988542 22234577788875
No 44
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=89.59 E-value=0.42 Score=51.04 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=42.0
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCC--chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh
Q 018000 94 EDRTIEFLSRCQDPNGGYGGGPGQMP--HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC 154 (362)
Q Consensus 94 ~~~~i~~l~~~Q~~dGGFgg~pg~~s--hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s 154 (362)
-...++||+..|.+||+||...+... -+.+|.+||.||..-+. ..-..++.+.||.+
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~----~~~~i~~Gl~fl~~ 113 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKT----GHSQVQQGAEFIAE 113 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHH
Confidence 45789999999999999996432222 48899999999988653 22234677888875
No 45
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=89.28 E-value=0.45 Score=50.98 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=41.7
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCC--chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh
Q 018000 95 DRTIEFLSRCQDPNGGYGGGPGQMP--HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC 154 (362)
Q Consensus 95 ~~~i~~l~~~Q~~dGGFgg~pg~~s--hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s 154 (362)
...++||+..|.+||+||....... -+.+|.+||.||...+. ..-..++.+.||.+
T Consensus 77 p~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~----~~~~i~~Gl~fl~~ 134 (785)
T 3s9v_A 77 PETVEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRT----GETQVQKGIEFFRT 134 (785)
T ss_dssp HHHHHHHHHCCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHccc----CHHHHHHHHHHHHH
Confidence 5789999999999999997532222 38899999999998653 22234577788875
No 46
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=89.14 E-value=0.48 Score=50.99 Aligned_cols=56 Identities=18% Similarity=0.280 Sum_probs=41.9
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCC--chhhhHHHHHHHHHcCCCCCCChhhHHHHHHHHHh
Q 018000 95 DRTIEFLSRCQDPNGGYGGGPGQMP--HLATTYAAVNALISLGGEKSLPSINRSKVYTFLKC 154 (362)
Q Consensus 95 ~~~i~~l~~~Q~~dGGFgg~pg~~s--hl~~Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s 154 (362)
...++||+..|.+||+||....... -+.+|.+||.||...+. ..-..++.+.||.+
T Consensus 104 p~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~----~~~~i~~Gl~fl~~ 161 (817)
T 3sdr_A 104 PQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNV----GDLQVEQGIEFIKS 161 (817)
T ss_dssp HHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHH
Confidence 5789999999999999996433222 48899999999988653 22234577888876
No 47
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=78.17 E-value=22 Score=38.02 Aligned_cols=143 Identities=14% Similarity=0.212 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCC-HHhHHHHHHHHhhccCCCCCCCCCC-CCCCchhh
Q 018000 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD-ADLEDRTIEFLSRCQDPNGGYGGGP-GQMPHLAT 123 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~-~~~~~~~i~~l~~~Q~~dGGFgg~p-g~~shl~~ 123 (362)
-++..+||.+.+++.+++.-+.=+..+.---|.+..|.-||..-. +..++.+++.|.++.... |.+.++ +..+++-.
T Consensus 244 d~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~ 322 (785)
T 3s9v_A 244 NKKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDER-GIGWARENPVPDIDD 322 (785)
T ss_dssp CHHHHHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTT-CCCSSTTCSSCCHHH
T ss_pred ChhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhc-cccccccCCCCCHHH
Confidence 477789999888766655544444456667788889999997421 345678899998776544 444433 23468888
Q ss_pred hHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccC-CCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000 124 TYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA-GEIDVRACYTAISVASILNILDDELLQNVGNY 199 (362)
Q Consensus 124 Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~-ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y 199 (362)
|.-++..|...|.+ .+ .| =+...+..+|.|....+ -..|+++.+..--++.| ....+...+.+..|
T Consensus 323 tAl~FRlLR~~Gy~--VS-~d------vf~~F~d~~g~F~~~~~e~~~dv~g~L~LYeAS~l-~~~gE~iLdeA~~F 389 (785)
T 3s9v_A 323 TAMGLRILRLHGYN--VS-SD------VLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHV-SFPGETIMEEAKLC 389 (785)
T ss_dssp HHHHHHHHHHTTCC--CC-GG------GGGGGBCTTSCBCSSTTCCCCCHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--CC-HH------HHHHHHhcCCCeeeccccccccccccHHHHhHhhc-CCCCcHHHHHHHHH
Confidence 98899999999964 11 11 12233456899987653 24688777665554443 33333445555444
No 48
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=77.29 E-value=25 Score=37.38 Aligned_cols=143 Identities=15% Similarity=0.242 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCC-HHhHHHHHHHHhhccCCCCCCCCC-CCCCCchhh
Q 018000 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD-ADLEDRTIEFLSRCQDPNGGYGGG-PGQMPHLAT 123 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~-~~~~~~~i~~l~~~Q~~dGGFgg~-pg~~shl~~ 123 (362)
-++-.+||.+.+++.+++.-+.=+..+.---|.+..|.-||..-. +..++.+++.|.++.... |.+.+ ++..+++-.
T Consensus 220 d~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~ 298 (764)
T 3p5p_A 220 DEKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSER-GIGWGRDSLVPDLNT 298 (764)
T ss_dssp CHHHHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTT-CCCSSTTCSSCCHHH
T ss_pred ChhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhc-ccccccCCCCCCHHH
Confidence 367789999888776655544445556667788889999997421 345678899998876554 34433 334578888
Q ss_pred hHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccC-CCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000 124 TYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA-GEIDVRACYTAISVASILNILDDELLQNVGNY 199 (362)
Q Consensus 124 Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~-ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y 199 (362)
|.-++..|...|.+ .+ .| =+...+..+|.|....+ -..|+++.+..--++.| ........+.+..|
T Consensus 299 tAl~FRlLR~~Gy~--VS-~d------vf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l-~~~gE~iLdeA~~F 365 (764)
T 3p5p_A 299 TALGLRTLRMHGYN--VS-SD------VLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDL-AFPDERAMDDARKF 365 (764)
T ss_dssp HHHHHHHHHHTTCC--CC-GG------GGGGGBCTTSCBCSCTTCSCCCHHHHHHHHHHHTT-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC--cc-Hh------HHHhhhcCCCCccccccccccccHHHHHHHHHHhC-CCCCcHHHHHHHHH
Confidence 98899999999953 11 11 12233446899987643 24688777665544433 23323334444333
No 49
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=63.71 E-value=47 Score=35.61 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCC-HHhHHHHHHHHhhccCCCCCCCCC-CCCCCchhh
Q 018000 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD-ADLEDRTIEFLSRCQDPNGGYGGG-PGQMPHLAT 123 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~-~~~~~~~i~~l~~~Q~~dGGFgg~-pg~~shl~~ 123 (362)
-++-.+||.+.+++.+++.-+.=+..+.---|.+..|.-||..-. +..++.+++.|.++.... |.+.+ ++...++-.
T Consensus 272 d~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~-gi~~~~~~~~~Dl~~ 350 (817)
T 3sdr_A 272 DAKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNER-GIGWGRLNPIADLET 350 (817)
T ss_dssp CHHHHHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTT-CCCSSTTCSSCCHHH
T ss_pred ChhHHHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhc-ccccccCCCCCCHHH
Confidence 367789999888776665544445556667788889999997421 345678889988776554 34433 344578888
Q ss_pred hHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccCC-CcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000 124 TYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDAG-EIDVRACYTAISVASILNILDDELLQNVGNY 199 (362)
Q Consensus 124 Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~g-e~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y 199 (362)
|.-++..|...|.+ .+ .| =+...+..+|.|....+. ..|+++.+..--++.| ....+...+.+..|
T Consensus 351 tAl~FRlLR~~Gy~--VS-~d------vf~~F~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l-~~~gE~iLdeA~~F 417 (817)
T 3sdr_A 351 TALGFRLLRLHRYN--VS-PA------IFDNFKDANGKFICSTGQFNKDVASMLNLYRASQL-AFPGENILDEAKSF 417 (817)
T ss_dssp HHHHHHHHHHTTCC--CC-GG------GGGGGBCC--CBCCCSSCHHHHHHHHHHHHHHHTT-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--cc-Hh------HHHHHhhcCCCceechhhhchhhHHHHHHHHHHhc-CCCChHHHHHHHHH
Confidence 88889999999953 11 11 122334567889876532 3577666555444432 23333334444433
No 50
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=59.73 E-value=1.1e+02 Score=30.19 Aligned_cols=166 Identities=14% Similarity=0.086 Sum_probs=80.4
Q ss_pred hHHHHHHHHhhcc--CCCCCCCCCCCCCCc--hhhhHHHHHHHHHcCCCCC-CC--hhhH--HHHHHHHHhcCCC-CCce
Q 018000 93 LEDRTIEFLSRCQ--DPNGGYGGGPGQMPH--LATTYAAVNALISLGGEKS-LP--SINR--SKVYTFLKCMKDP-SGAF 162 (362)
Q Consensus 93 ~~~~~i~~l~~~Q--~~dGGFgg~pg~~sh--l~~Ty~Av~sL~ilg~~~~-l~--~idr--~~~~~fL~s~Q~~-dGgF 162 (362)
...+..+||...+ +++|||--....... +-.-|.++-.|+-++.... -. -++. +.+..+...+..| .|-|
T Consensus 169 ~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~ 248 (445)
T 3k11_A 169 LIQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLY 248 (445)
T ss_dssp HHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEE
T ss_pred HHHHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCE
Confidence 4456678898887 668999754211111 2344566666655442100 01 1111 1122223334433 4655
Q ss_pred eecc---CCC----cccchHHHHHHH-HHHhccCCH---------HHHHHHHHHHHhccCCCCCcCCCCCCC-CchhHhH
Q 018000 163 RMHD---AGE----IDVRACYTAISV-ASILNILDD---------ELLQNVGNYILSCQTYEGGIAGEPGSE-AHGGYTF 224 (362)
Q Consensus 163 ~~~~---~ge----~D~r~~Y~al~~-~~LL~~~~~---------~~~~~~~~yI~scQ~~dGGFg~~pg~e-sh~~~Tf 224 (362)
.-.. .+. .=.|+.=+++.. ..+|..++. ...++++++|+++|..+|-|-..+..+ +-...+.
T Consensus 249 ~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSa 328 (445)
T 3k11_A 249 RHGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSA 328 (445)
T ss_dssp CSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHH
T ss_pred eeeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccH
Confidence 3211 111 122333222222 222333321 456789999999999999887654332 1122233
Q ss_pred HHHHHHHH-----hccCCc----ccHHHHHHHHHhCCCCCCcc
Q 018000 225 CGLAAMIL-----INEADR----LDLDALIGWVVFRQGVEGGF 258 (362)
Q Consensus 225 cALaaL~l-----lg~~~~----~d~~~l~~WL~~rQ~~eGGF 258 (362)
.|+.+..| +|..+. .-.+++++.|..+...+|-.
T Consensus 329 TAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l 371 (445)
T 3k11_A 329 TAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQV 371 (445)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCB
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 33333333 343321 12467888888776666644
No 51
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=48.99 E-value=49 Score=31.84 Aligned_cols=156 Identities=13% Similarity=0.052 Sum_probs=86.1
Q ss_pred CChhHHHHHHHHHHHHhCCC--CCHHhHHHHHHHHhhccCCCC-CCCCCCCCCCchhhhH-------HHHH-H--HHHcC
Q 018000 69 ANRPWICYWILHSMALLGEF--VDADLEDRTIEFLSRCQDPNG-GYGGGPGQMPHLATTY-------AAVN-A--LISLG 135 (362)
Q Consensus 69 ~sr~w~~Yw~l~sL~lLg~~--~~~~~~~~~i~~l~~~Q~~dG-GFgg~pg~~shl~~Ty-------~Av~-s--L~ilg 135 (362)
+..+...||...++..|... .-....++.++.|..-.-+|+ +|..+..+...--.+| =++. . |+-.|
T Consensus 166 ~~~ln~SY~~~~a~~~f~~~~~~W~~l~~~g~~lL~~g~p~D~~~l~~~~~~~~~~~y~yd~~vn~iDalrv~L~La~~g 245 (350)
T 3ren_A 166 GNTTTLCYLDLPTMKLLSQVDKKWEGIYEKSNSIIENGKISEEVPLYRKVFYEETQKYDEEENVDFLLSTIVILNRIEAG 245 (350)
T ss_dssp CSEEEGGGCCHHHHHHHHHHCTHHHHHHHHHHHHHHTTBCCSSSCCBCSEEETTTTEECCCSEEEHHHHHHHHHHHHHTT
T ss_pred CCEeehHhcCHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCcccccCCcccccCCCCcccccccchHHHHHHHHHHHhcC
Confidence 55667889999888887641 223455667777777444452 4442211111122222 1222 2 33333
Q ss_pred CCCCCChhhHHHHHHHHHhc-C---CCCCceeeccCC--CcccchHHHHHHHHHHhccCCHHHHHHHHHHHHhccCCC--
Q 018000 136 GEKSLPSINRSKVYTFLKCM-K---DPSGAFRMHDAG--EIDVRACYTAISVASILNILDDELLQNVGNYILSCQTYE-- 207 (362)
Q Consensus 136 ~~~~l~~idr~~~~~fL~s~-Q---~~dGgF~~~~~g--e~D~r~~Y~al~~~~LL~~~~~~~~~~~~~yI~scQ~~d-- 207 (362)
.. .....+|++.. + .--|.|....+. .......+.|++++..+..-+.++.+.+.+-+..-|..+
T Consensus 246 ~~-------~~~~~~fl~~~~~~~g~l~~~y~~~tg~~~~~~eS~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~ 318 (350)
T 3ren_A 246 EN-------EESSIKWIKEKFKKDGFLVATYNGKNGDATSQIESPSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKD 318 (350)
T ss_dssp CC-------CHHHHHHHHHHHHHHSSCCSEEETTTCCBCCCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTT
T ss_pred CC-------cHHHHHHHHHHHhhcCCcceEEECCCCCcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCC
Confidence 21 23457888851 1 112444422211 112334566666665566667788888888888766555
Q ss_pred ----CCcCCCCCCCCchhHhHHHHHHHH
Q 018000 208 ----GGIAGEPGSEAHGGYTFCGLAAMI 231 (362)
Q Consensus 208 ----GGFg~~pg~esh~~~TfcALaaL~ 231 (362)
|||+.......|..--..+|-|..
T Consensus 319 s~yyGG~~~~~~~~~~sfdNL~~LlA~~ 346 (350)
T 3ren_A 319 SVLYGGFGDEKTNSVYSFDNLNALLAFQ 346 (350)
T ss_dssp STTTTSCSBTTTTBCBHHHHHHHHHHHH
T ss_pred cccCCcccccCCCceeeeccHHHHHHHH
Confidence 999987777777766666665554
No 52
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=47.12 E-value=2.6e+02 Score=29.47 Aligned_cols=142 Identities=17% Similarity=0.259 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhccCCCCCceeccCChhHHHHHHHHHHHHhCCCCC-HHhHHHHHHHHhhccCCCCCCCCCCC-CCCchhh
Q 018000 46 RKNHVEYLLRGLQQLGPSFCSLDANRPWICYWILHSMALLGEFVD-ADLEDRTIEFLSRCQDPNGGYGGGPG-QMPHLAT 123 (362)
Q Consensus 46 r~~H~~yl~~~l~~l~~~~~~lD~sr~w~~Yw~l~sL~lLg~~~~-~~~~~~~i~~l~~~Q~~dGGFgg~pg-~~shl~~ 123 (362)
-++-.+||++.+++.+++.-+.-+..+.---|.+..|.-||..-. +..++.+++.|.++...+ |.++.++ ...++-.
T Consensus 219 d~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~-g~~~~~~~~~~DL~~ 297 (727)
T 3pya_A 219 DSNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDN-GICWARCSHVQDIDD 297 (727)
T ss_dssp CHHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTT-CCCSSSSCSCCCHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhc-CcccccCCCCCCHHH
Confidence 466788998888766555444444555666788889999997421 345678899998776544 3443332 3568888
Q ss_pred hHHHHHHHHHcCCCCCCChhhHHHHHHHHHhcCCCCCceeeccC-CCcccchHHHHHHHHHHhccCCHHHHHHHHHH
Q 018000 124 TYAAVNALISLGGEKSLPSINRSKVYTFLKCMKDPSGAFRMHDA-GEIDVRACYTAISVASILNILDDELLQNVGNY 199 (362)
Q Consensus 124 Ty~Av~sL~ilg~~~~l~~idr~~~~~fL~s~Q~~dGgF~~~~~-ge~D~r~~Y~al~~~~LL~~~~~~~~~~~~~y 199 (362)
|.-++..|...|.+ .+ .| + +...+ .+|.|....+ -..|+++....--++. |....+...+.+..|
T Consensus 298 tAL~FRLLRqhGy~--VS-~D---v---F~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~-l~~~gE~iLdeA~~F 363 (727)
T 3pya_A 298 TAMAFRLLRQHGYQ--VS-AD---V---FKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQ-LAFPREEILKNAKEF 363 (727)
T ss_dssp HHHHHHHHHHTTCC--CC-GG---G---GGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHT-TCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--CC-HH---H---HHhcc-CCCcccccccccccccHHHHHHHHHHH-cCCCchHHHHHHHHH
Confidence 98899999999964 11 12 1 22333 5789984432 2457766655544443 333333344544444
No 53
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=31.08 E-value=1.1e+02 Score=29.00 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=54.2
Q ss_pred HHHHHHHHh-hccCC-CCCCCC------CCCCCCchhhhHH---HHHHH----HHc---CCCCCCChhhHHHHHHHHHhc
Q 018000 94 EDRTIEFLS-RCQDP-NGGYGG------GPGQMPHLATTYA---AVNAL----ISL---GGEKSLPSINRSKVYTFLKCM 155 (362)
Q Consensus 94 ~~~~i~~l~-~~Q~~-dGGFgg------~pg~~shl~~Ty~---Av~sL----~il---g~~~~l~~idr~~~~~fL~s~ 155 (362)
.++++.|.. ....+ .|||.+ .|- ++...++. .|.++ ..+ |.++.+.. .+++++||.+.
T Consensus 19 ~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~~--~~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~--A~~~~~fl~~~ 94 (402)
T 1fp3_A 19 LDRVMAFWLEHSHDREHGGFFTCLGRDGRVY--DDLKYVWLQGRQVWMYCRLYRKLERFHRPELLDA--AKAGGEFLLRH 94 (402)
T ss_dssp HHHHHHHHHHHSBCTTTSSBCCCBCTTSCBS--CCCEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCCCCEeeEECCCCCCC--CCccchhhhHHHHHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHh
Confidence 467888887 56654 689865 232 22222222 12222 222 43211111 25788999985
Q ss_pred -CCCCC--ceeecc--CCCc-c-cc----hHHHHHHHHHHhcc-CCH---HHHHHHHHHHHhcc--CCCCCcC
Q 018000 156 -KDPSG--AFRMHD--AGEI-D-VR----ACYTAISVASILNI-LDD---ELLQNVGNYILSCQ--TYEGGIA 211 (362)
Q Consensus 156 -Q~~dG--gF~~~~--~ge~-D-~r----~~Y~al~~~~LL~~-~~~---~~~~~~~~yI~scQ--~~dGGFg 211 (362)
..++| +|.... .++. + .+ .++.+++.+.+... .+. ....++.++|.+-- ..+|+|.
T Consensus 95 ~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G~f~ 167 (402)
T 1fp3_A 95 ARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGR 167 (402)
T ss_dssp TBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGGGCC
T ss_pred ccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCcccC
Confidence 56564 787543 2321 2 12 23333333332222 122 23445666666643 4567774
No 54
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=30.35 E-value=2.3e+02 Score=26.25 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=53.5
Q ss_pred hHHHHHHHH-hhccCCCCCCCC-CC--C-CCCchhhhHHH---HHHH----HH-cCCCCCCChhhHHHHHHHHHhc-CCC
Q 018000 93 LEDRTIEFL-SRCQDPNGGYGG-GP--G-QMPHLATTYAA---VNAL----IS-LGGEKSLPSINRSKVYTFLKCM-KDP 158 (362)
Q Consensus 93 ~~~~~i~~l-~~~Q~~dGGFgg-~p--g-~~shl~~Ty~A---v~sL----~i-lg~~~~l~~idr~~~~~fL~s~-Q~~ 158 (362)
..++++.|. ...+.+.|||-. .. + ..+|-.++|.- |.++ .. .++++ +..+ -+++++||.+. ..+
T Consensus 16 l~~~~l~fw~~~~~D~~GGf~~~~~~d~~~~~~eK~l~~nar~i~~~a~a~~~~~~~~~-~~~~-A~~~~~~l~~~~~~~ 93 (388)
T 2gz6_A 16 LLNDVLPFWENHSLDSEGGYFTCLDRQGKVYDTDKFIWLQNRQVWTFSMLCNQLEKREN-WLKI-ARNGAKFLAQHGRDD 93 (388)
T ss_dssp HHHTHHHHHHHHCBCTTSSBCCEEBTTSCEEECCEEHHHHHHHHHHHHHHHHHTCCCHH-HHHH-HHHHHHHHHHHSBCT
T ss_pred HHHhHHHHHHhcCCCCCCCEEeEECCCCCcCCcchhHHHHHHHHHHHHHHHHHhcCCHH-HHHH-HHHHHHHHHHhcCCC
Confidence 456677777 557777888632 11 1 23454444421 1122 22 34321 1111 25789999984 778
Q ss_pred CCceeecc--CCCc-c-cchHHH-HHHHHHHhc---c-CCH---HHHHHHHHHHHhcc
Q 018000 159 SGAFRMHD--AGEI-D-VRACYT-AISVASILN---I-LDD---ELLQNVGNYILSCQ 204 (362)
Q Consensus 159 dGgF~~~~--~ge~-D-~r~~Y~-al~~~~LL~---~-~~~---~~~~~~~~yI~scQ 204 (362)
+|+|.... .|+. + .+.+|. ++++..+.. . ..+ ....++.++|.+..
T Consensus 94 ~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~ 151 (388)
T 2gz6_A 94 EGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRK 151 (388)
T ss_dssp TSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 89997542 3332 2 333442 222222221 1 122 23456777887754
No 55
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=25.52 E-value=1.4e+02 Score=28.47 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=56.9
Q ss_pred HHHHHHH-HhcCCCCCceeec--cCCCc---ccchHH-------HHHHHHHHhccCC-HHHHHHHHHHHHh-ccCCC-CC
Q 018000 146 SKVYTFL-KCMKDPSGAFRMH--DAGEI---DVRACY-------TAISVASILNILD-DELLQNVGNYILS-CQTYE-GG 209 (362)
Q Consensus 146 ~~~~~fL-~s~Q~~dGgF~~~--~~ge~---D~r~~Y-------~al~~~~LL~~~~-~~~~~~~~~yI~s-cQ~~d-GG 209 (362)
+.++.|- ...+.+.|||... ..|.. +-+.++ +...+..+++... ....+++++||.+ +...+ ||
T Consensus 16 ~~~l~fw~~~~~D~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~~~Gg 95 (402)
T 3gt5_A 16 SDTMAFYHPRCIDSAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNPATGG 95 (402)
T ss_dssp HHHHHHHTTTTBCTTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCTTTSC
T ss_pred HHHHHHHHhcCCCCCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccCCCCc
Confidence 4677765 4566688999742 22332 113333 2211112232211 1356788999987 56666 88
Q ss_pred cCCCC-CCC-----Cch-hHhHHHHHHHH--HhccCCccc-HHHHHHHHHhCCC-C-CCccc
Q 018000 210 IAGEP-GSE-----AHG-GYTFCGLAAMI--LINEADRLD-LDALIGWVVFRQG-V-EGGFQ 259 (362)
Q Consensus 210 Fg~~p-g~e-----sh~-~~TfcALaaL~--llg~~~~~d-~~~l~~WL~~rQ~-~-eGGF~ 259 (362)
|...- .++ .+. .|+|..+|.+. ..+....++ ..++.+++..+-. + .|||.
T Consensus 96 ~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~ 157 (402)
T 3gt5_A 96 YAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIKQAREWMDETWCLLERHFWDAEYGLYK 157 (402)
T ss_dssp BCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTEETTTTEEC
T ss_pred EEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcCCcCCCch
Confidence 87532 111 122 24444433332 233333333 4667778876643 3 46664
No 56
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.57 E-value=3.9e+02 Score=26.21 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=86.3
Q ss_pred HHHHHHHHhcc-CCCCCceecc--CChhHH--HHHHHHHHHHhCCCC-CHH--hHHHHHH----HHhhccCC-CCCC---
Q 018000 48 NHVEYLLRGLQ-QLGPSFCSLD--ANRPWI--CYWILHSMALLGEFV-DAD--LEDRTIE----FLSRCQDP-NGGY--- 111 (362)
Q Consensus 48 ~H~~yl~~~l~-~l~~~~~~lD--~sr~w~--~Yw~l~sL~lLg~~~-~~~--~~~~~i~----~l~~~Q~~-dGGF--- 111 (362)
+..+||...+. ...|.|..-+ ..++|+ +|.++--|.-++... ++. ..+.++. +...+.++ +|-|
T Consensus 172 ~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg 251 (445)
T 3k11_A 172 NYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHG 251 (445)
T ss_dssp HHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSE
T ss_pred HHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeee
Confidence 34556665542 3356776532 345663 555555555554311 122 3344332 33344544 3322
Q ss_pred -CCCCCC-------CCchhhhHHHHHHHHHcCCCCCCC--hhh-HHHHHHHHHhcCCCCCceeeccC---CCcccchHHH
Q 018000 112 -GGGPGQ-------MPHLATTYAAVNALISLGGEKSLP--SIN-RSKVYTFLKCMKDPSGAFRMHDA---GEIDVRACYT 177 (362)
Q Consensus 112 -gg~pg~-------~shl~~Ty~Av~sL~ilg~~~~l~--~id-r~~~~~fL~s~Q~~dGgF~~~~~---ge~D~r~~Y~ 177 (362)
....++ .++...+++.+.+|..+.....-. .++ -+++.+.+.+.|.++|.|....+ .-.|+ +=+
T Consensus 252 ~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~Es--SaT 329 (445)
T 3k11_A 252 WVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLET--SAT 329 (445)
T ss_dssp EETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEH--HHH
T ss_pred ecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCc--cHH
Confidence 111111 246667777777888776432110 011 25688899999999999875432 12343 334
Q ss_pred HHHHHHHh-----ccCCH----HHHHHHHHHHHhccCCCCCcCC
Q 018000 178 AISVASIL-----NILDD----ELLQNVGNYILSCQTYEGGIAG 212 (362)
Q Consensus 178 al~~~~LL-----~~~~~----~~~~~~~~yI~scQ~~dGGFg~ 212 (362)
|+.+..|+ +.++. ...+++.+.|.++-+.||-.++
T Consensus 330 Amfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~~ 373 (445)
T 3k11_A 330 AIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVEG 373 (445)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBCS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEec
Confidence 44443332 34443 3467888999988888886643
No 57
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=21.93 E-value=2.9e+02 Score=26.26 Aligned_cols=68 Identities=16% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCceeeccC-CCcccchHHHHHHHHHHh-----ccCCH---HHHHHHHHHHHhccCCCCCcCCC
Q 018000 146 SKVYTFLKCMKDPSGAFRMHDA-GEIDVRACYTAISVASIL-----NILDD---ELLQNVGNYILSCQTYEGGIAGE 213 (362)
Q Consensus 146 ~~~~~fL~s~Q~~dGgF~~~~~-ge~D~r~~Y~al~~~~LL-----~~~~~---~~~~~~~~yI~scQ~~dGGFg~~ 213 (362)
+++.+++.+.|.++|-|.-..+ .+.-...+=+|+.+..|+ +.++. ...+++.+.|.++-+.||-.+++
T Consensus 266 ~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~v 342 (382)
T 3pmm_A 266 DAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQT 342 (382)
T ss_dssp HHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCSC
T ss_pred HHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeCe
Done!