Query 018001
Match_columns 362
No_of_seqs 131 out of 374
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 08:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 98.7 2.3E-08 7.9E-13 98.9 6.7 171 77-303 217-387 (408)
2 3zy2_A Putative GDP-fucose pro 98.4 1.2E-06 4.1E-11 86.6 12.0 172 45-299 165-351 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 94.2 0.2 6.7E-06 51.7 10.3 83 208-295 335-420 (526)
4 2hhc_A NODZ, nodulation fucosy 84.6 4.2 0.00014 38.2 9.4 74 211-289 215-294 (330)
5 1l2m_A REP protein; A+B fold, 34.2 42 0.0014 28.1 4.3 28 192-220 17-44 (118)
6 2eqr_A N-COR1, N-COR, nuclear 30.3 31 0.0011 25.0 2.5 19 189-207 9-27 (61)
7 3l32_A Phosphoprotein; antipar 29.2 24 0.00083 24.9 1.7 22 78-99 2-23 (45)
8 1p3q_Q VPS9P, vacuolar protein 27.6 19 0.00064 26.4 0.9 37 228-269 15-51 (54)
9 2g7j_A Putative cytoplasmic pr 22.7 33 0.0011 28.8 1.6 19 195-213 3-21 (124)
10 2fr5_A Cytidine deaminase; tet 19.4 82 0.0028 26.9 3.5 39 202-245 104-142 (146)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=98.66 E-value=2.3e-08 Score=98.91 Aligned_cols=171 Identities=23% Similarity=0.223 Sum_probs=102.9
Q ss_pred cccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhcccccCCceEEEeechhhhhHhhccCCCCCChH
Q 018001 77 HALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEE 156 (362)
Q Consensus 77 ~ALrF~p~I~~lg~~LV~Rlr~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~yiAlHLRfE~DMlA~sgC~~g~~~~ 156 (362)
..|+|++.|.+.|+..++..-..... -+++..|. +-...........+++|+|+|+|-+.=+.+...|.-.
T Consensus 217 r~l~~s~~l~~~a~~fi~~~L~~~~~---~~h~r~~~--dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps---- 287 (408)
T 4ap5_A 217 RSMVFARHLREVGDEFRSRHLNSTDD---ADRIPFQE--DWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPS---- 287 (408)
T ss_dssp HTCCBCHHHHHHHHHHHHHHHCCCTT---TTTCCCCS--SGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCC----
T ss_pred HHhhhhHHHHHHHHHHHHHHhCcccc---eeecccch--hHhhhhcccccccCCCccccccccccchhhhhccCCC----
Confidence 47999999999999998876432100 01111110 0001111223344689999999976323333333311
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCChhhhhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEeeccccCccccchhHHhhC
Q 018001 157 ERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLY 236 (362)
Q Consensus 157 E~~eL~~~R~~~~~~~~~~~~~~~~i~~~~~R~~G~CPLtPeEvgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~F 236 (362)
......+ +.-+++.. +-+.||||+-+ .+..+.-|++.+
T Consensus 288 ~~~~~~~------------------------------------i~~~~~~~---~~~~VyiATD~---~~~~~~~l~~~~ 325 (408)
T 4ap5_A 288 LEGAVRK------------------------------------IRSLMKTH---RLDKVFVATDA---VRKEYEELKKLL 325 (408)
T ss_dssp HHHHHHH------------------------------------HHHHHHHH---TCSCEEEEECC---CHHHHHHHHHHC
T ss_pred HHHHHHH------------------------------------HHHHHHhc---CCCEEEEeCCC---chhHHHHHHHhC
Confidence 1111111 11122222 23469999864 344577899999
Q ss_pred CCcccccccCCccccccccccccccchhhheeeccCceeeecCCCCchhhhhhhccccccCCCCccc
Q 018001 237 PYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTI 303 (362)
Q Consensus 237 Pnl~tKe~L~s~eEL~~f~~~ss~~AALDy~Vc~~SDvFv~t~~G~nma~~V~GhR~y~G~~~~kTi 303 (362)
|.++.-.. ..+++..+. ....|.||-+||.+||+||+|... +|+..|.=.|-+.|+....|.
T Consensus 326 ~~~~~~~~--~~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~S-tfS~~I~~eR~~~G~~~~~t~ 387 (408)
T 4ap5_A 326 PEMVRFEP--TWEELELYK--DGGVAIIDQWICAHARFFIGTSVS-TFSFRIHEEREILGLDPKTTY 387 (408)
T ss_dssp TTEECCCC--CHHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTC-HHHHHHHHHHHHHTBCGGGTS
T ss_pred CCcEEecC--cchhhhccC--cchhhHHHHHHHHhCCeeEeCCcC-chhHHHHHHHHhcCCCCCccc
Confidence 98764322 234444444 445788999999999999998744 799999999999998754443
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.44 E-value=1.2e-06 Score=86.58 Aligned_cols=172 Identities=20% Similarity=0.221 Sum_probs=110.0
Q ss_pred hcCeEEEeccCCCCCCCCCchhhhhhhhhhcccccccchhHHHHHHHHHHHHhcccCCCCCCCcccCCCccchhhhhhhc
Q 018001 45 RNGVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRG 124 (362)
Q Consensus 45 ~~~Vi~l~~~~~rLa~~~~p~~iQrLRCrvnf~ALrF~p~I~~lg~~LV~Rlr~~~~~~~~~~~~~~g~~~~~~~~~~~~ 124 (362)
+|=|+.|++.....--..-.-.||| -|+++++|.+.|++.|+.--
T Consensus 165 ~~pVlAf~gaPa~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L--------------------------- 209 (362)
T 3zy2_A 165 EYPVLAFSSAPAPFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANL--------------------------- 209 (362)
T ss_dssp TCSEEEESSCSSCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHC---------------------------
T ss_pred cCceEeecCCCCCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhc---------------------------
Confidence 4789999987543211122335666 59999999999999998742
Q ss_pred ccccCCceEEEeechhhhhHhhccCCCC-CC--h---HHHHHHHHHHHhhhhhhhhcccCCCCCChhhhhcCC-----CC
Q 018001 125 QSAKASRYLAIHLRFEIDMVAHSLCEFG-GG--E---EERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEG-----LC 193 (362)
Q Consensus 125 ~~~~~~~yiAlHLRfE~DMlA~sgC~~g-~~--~---~E~~eL~~~R~~~~~~~~~~~~~~~~i~~~~~R~~G-----~C 193 (362)
++||||||||-=.|+.-. |.+- .+ . +.-..+ .| ....| .|
T Consensus 210 ----~rpyVgIHLR~G~DW~~a--C~hlk~~~~~~lfaSPQC~------Gy-----------------~~~~~~lt~emC 260 (362)
T 3zy2_A 210 ----AKPFVAVHLRNDADWVRV--CEHIDTTTNRPLFASEQCL------GE-----------------GHHLGTLTKEIC 260 (362)
T ss_dssp ----CSSEEEEEECCCHHHHHH--HHTCCTTTCCCCTTTHHHH------CG-----------------GGTTCCCCHHHH
T ss_pred ----CCCeEEEEEecCCcHHHH--HhhhccccCcccccCCccc------CC-----------------cccCcccchhcc
Confidence 238999999998899765 8752 11 0 000000 00 00111 13
Q ss_pred CCCHH----HHHHHHHHhCCCCCcEEEEeeccccCccccchhHHhhCCCcccccccCCccccccccccccccchhhheee
Q 018001 194 PLTPE----EAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGC 269 (362)
Q Consensus 194 PLtPe----Evgl~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDy~Vc 269 (362)
==+.+ .+..+++.++ -..||||+-. ...++-|+++|+.... .+.+ +.| -.|+||-+||
T Consensus 261 lPSle~I~rqIk~~vk~~~---lksVFIATDa----~~~~~ELk~~L~~~~v--~vv~---~~p------e~a~ID~~I~ 322 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIG---AKSVFVASDK----DHMIDEINEALKPYEI--EAHR---QEP------DDMYTSLAIM 322 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHT---CSEEEEEESS----CCCHHHHHHHHGGGTC--CEEC---CSS------CCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcC---CcEEEEecCC----HHHHHHHHHHhhccCc--eEEE---eCC------chhHHHHHHH
Confidence 11232 3344455553 5789999974 3457889998875211 1111 001 1799999999
Q ss_pred ccCceeeecCCCCchhhhhhhccccccCCC
Q 018001 270 TAANAFAMTDSGSQLSSLVSGYRIYYGGGK 299 (362)
Q Consensus 270 ~~SDvFv~t~~G~nma~~V~GhR~y~G~~~ 299 (362)
.+||+||+|.. |.|+..|.-.|--.|+.+
T Consensus 323 ~~A~~FIGN~~-SSFSa~I~rERdi~G~~~ 351 (362)
T 3zy2_A 323 GRADLFVGNCV-STFSHIVKRERDHAGQSP 351 (362)
T ss_dssp HHSSEEEECTT-CHHHHHHHHHHHHSSSSC
T ss_pred HhCCEeecCcc-ccccHHHHHHHHhcCCCC
Confidence 99999999874 479999999999998543
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=94.24 E-value=0.2 Score=51.73 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=53.1
Q ss_pred CCCCCcEEEEeeccccCccccchhHHhhCCCc--ccccccCCcccc-ccccccccccchhhheeeccCceeeecCCCCch
Q 018001 208 GFNRKTHVFVAGAQIYGGTRRLGALNSLYPYL--VTKENLLSATEL-EPFKNFSSQLAALDFIGCTAANAFAMTDSGSQL 284 (362)
Q Consensus 208 Gf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl--~tKe~L~s~eEL-~~f~~~ss~~AALDy~Vc~~SDvFv~t~~G~nm 284 (362)
..+..+.||||+.+ ...++-+++.||+. ++.........+ ..+...+-..+.+|.++.+++|+||.|.++ |+
T Consensus 335 ~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~sS-~~ 409 (526)
T 2de0_X 335 MQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSS-QV 409 (526)
T ss_dssp SCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECTTS-HH
T ss_pred cCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCCCC-HH
Confidence 46778999999886 35677788889986 222111111111 111101113577999999999999998755 78
Q ss_pred hhhhhhccccc
Q 018001 285 SSLVSGYRIYY 295 (362)
Q Consensus 285 a~~V~GhR~y~ 295 (362)
+.++...+.-.
T Consensus 410 srla~~l~~~~ 420 (526)
T 2de0_X 410 CRVAYEIMQTL 420 (526)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhcCc
Confidence 88887665433
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=84.65 E-value=4.2 Score=38.19 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=43.1
Q ss_pred CCcEEEEeeccccCccccchhHHhhCCCccccc-ccCCcc-ccccc--cc-cccccchhhheeeccCceee-ecCCCCch
Q 018001 211 RKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKE-NLLSAT-ELEPF--KN-FSSQLAALDFIGCTAANAFA-MTDSGSQL 284 (362)
Q Consensus 211 ~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe-~L~s~e-EL~~f--~~-~ss~~AALDy~Vc~~SDvFv-~t~~G~nm 284 (362)
.++.||||+-+. ..++-|++.||++..-. .+.... .-..+ .+ -....+.+|.+.-+.+|.+| .+..+ .|
T Consensus 215 ~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~Dm~LLS~cd~~I~~~~~S-TF 289 (330)
T 2hhc_A 215 KPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGGASALIDMYLLARCATVIRFPPTS-AF 289 (330)
T ss_dssp SCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHHHHHHHHHHHHTTCSEEEEESTTC-GG
T ss_pred CceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccchHHHHHHHHHHcCCeeEECCCCC-CH
Confidence 468899999875 35677999999843321 111000 00000 00 12346789999999999999 32223 57
Q ss_pred hhhhh
Q 018001 285 SSLVS 289 (362)
Q Consensus 285 a~~V~ 289 (362)
+-..+
T Consensus 290 s~~aa 294 (330)
T 2hhc_A 290 TRYAR 294 (330)
T ss_dssp GHHHH
T ss_pred HHHHH
Confidence 76554
No 5
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=34.24 E-value=42 Score=28.13 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeec
Q 018001 192 LCPLTPEEAVLMLAALGFNRKTHVFVAGA 220 (362)
Q Consensus 192 ~CPLtPeEvgl~L~alGf~~~T~IYlA~g 220 (362)
.|||++||+...|+.|--+.+ ..||...
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~ 44 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeeh
Confidence 699999999999999985554 5555444
No 6
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.31 E-value=31 Score=24.98 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=17.1
Q ss_pred cCCCCCCCHHHHHHHHHHh
Q 018001 189 SEGLCPLTPEEAVLMLAAL 207 (362)
Q Consensus 189 ~~G~CPLtPeEvgl~L~al 207 (362)
.+...|.||+|..+|++++
T Consensus 9 r~~~~~WT~eE~~~F~~~~ 27 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKF 27 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHH
Confidence 4677899999999999999
No 7
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=29.20 E-value=24 Score=24.94 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=18.6
Q ss_pred ccccchhHHHHHHHHHHHHhcc
Q 018001 78 ALQFAPKIQETGALLLRRLRKH 99 (362)
Q Consensus 78 ALrF~p~I~~lg~~LV~Rlr~~ 99 (362)
|+-|+.-+.++|.++|+||++.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtG 23 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSG 23 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHHHHHHHHHcc
Confidence 4567788999999999999873
No 8
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=27.60 E-value=19 Score=26.42 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=18.5
Q ss_pred cchhHHhhCCCcccccccCCccccccccccccccchhhheee
Q 018001 228 RLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGC 269 (362)
Q Consensus 228 ~l~~L~~~FPnl~tKe~L~s~eEL~~f~~~ss~~AALDy~Vc 269 (362)
.+..|++|||++- ++.+-+ =| ..|.+...+|||-...
T Consensus 15 ~~~~L~~MFP~lD-~evI~~--Vl--~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 15 TLNTLQNMFPDMD-PSLIED--VC--IAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHSTTSC-HHHHHH--HH--HHSCC--CGGGC----
T ss_pred HHHHHHHHcccCC-HHHHHH--HH--HHcCCCHHHHHHHHHh
Confidence 4788999999995 333211 11 1234556677775543
No 9
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=22.72 E-value=33 Score=28.78 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 018001 195 LTPEEAVLMLAALGFNRKT 213 (362)
Q Consensus 195 LtPeEvgl~L~alGf~~~T 213 (362)
|-|.||+.+|...||..+.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998764
No 10
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=19.44 E-value=82 Score=26.91 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=30.6
Q ss_pred HHHHHhCCCCCcEEEEeeccccCccccchhHHhhCCCccccccc
Q 018001 202 LMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENL 245 (362)
Q Consensus 202 l~L~alGf~~~T~IYlA~geiyGg~~~l~~L~~~FPnl~tKe~L 245 (362)
-+|.-+| .++.||++..+ |.....+|.++.|.-++.++|
T Consensus 104 q~l~E~~--~~~~v~~~~~~---g~~~~~~l~eLLP~~F~~~~l 142 (146)
T 2fr5_A 104 QVMREFG--TDWAVYMTKPD---GTFVVRTVQELLPASFGPEDL 142 (146)
T ss_dssp HHHHHTC--SSCEEEEECTT---SCEEEEEHHHHSTTCCCGGGG
T ss_pred HHHHHhC--CCCEEEEECCC---CCEEEEEHHHhCCCCCChHHH
Confidence 4677777 78999999874 544456899999999987776
Done!