Query 018003
Match_columns 362
No_of_seqs 370 out of 3557
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 100.0 6E-27 1.3E-31 205.8 17.9 208 118-352 16-238 (238)
2 PF01209 Ubie_methyltran: ubiE 99.9 2.6E-27 5.6E-32 210.3 12.1 210 115-351 9-233 (233)
3 PLN02233 ubiquinone biosynthes 99.9 5.9E-24 1.3E-28 192.9 18.6 180 171-350 67-260 (261)
4 PRK11088 rrmA 23S rRNA methylt 99.9 2.5E-24 5.4E-29 196.9 14.6 179 71-289 2-185 (272)
5 PLN02244 tocopherol O-methyltr 99.9 5E-22 1.1E-26 187.0 21.7 170 166-342 102-280 (340)
6 KOG1540 Ubiquinone biosynthesi 99.9 2E-22 4.4E-27 173.7 14.1 207 118-349 65-293 (296)
7 PLN02396 hexaprenyldihydroxybe 99.9 1.2E-21 2.6E-26 181.5 16.1 155 176-338 130-287 (322)
8 TIGR02752 MenG_heptapren 2-hep 99.9 2.1E-20 4.6E-25 167.1 20.7 182 167-351 35-231 (231)
9 PTZ00098 phosphoethanolamine N 99.9 3.4E-20 7.4E-25 168.5 19.9 163 163-340 38-202 (263)
10 COG2227 UbiG 2-polyprenyl-3-me 99.9 1.5E-21 3.3E-26 168.6 10.4 153 176-338 58-213 (243)
11 PF13489 Methyltransf_23: Meth 99.9 8.5E-21 1.8E-25 159.6 13.9 142 175-338 20-161 (161)
12 PRK05785 hypothetical protein; 99.9 8.6E-21 1.9E-25 168.5 13.8 162 178-352 52-225 (226)
13 TIGR00452 methyltransferase, p 99.8 5.7E-20 1.2E-24 169.6 19.1 166 167-343 111-276 (314)
14 PRK15068 tRNA mo(5)U34 methylt 99.8 5.2E-20 1.1E-24 171.6 18.5 166 167-343 112-277 (322)
15 PRK11036 putative S-adenosyl-L 99.8 4.1E-20 8.8E-25 167.6 17.3 178 167-350 35-217 (255)
16 PRK14103 trans-aconitate 2-met 99.8 1E-19 2.2E-24 165.1 18.5 158 167-336 19-180 (255)
17 PLN02336 phosphoethanolamine N 99.8 4.9E-19 1.1E-23 174.7 21.4 161 165-340 254-414 (475)
18 PRK10258 biotin biosynthesis p 99.8 2.6E-19 5.5E-24 162.1 17.3 152 166-335 31-182 (251)
19 PRK00216 ubiE ubiquinone/menaq 99.8 3.1E-18 6.7E-23 153.6 21.9 184 167-352 41-239 (239)
20 PRK08317 hypothetical protein; 99.8 1.5E-18 3.2E-23 155.6 19.6 167 167-343 9-179 (241)
21 PF08241 Methyltransf_11: Meth 99.8 1.2E-19 2.6E-24 138.5 10.6 95 182-283 1-95 (95)
22 PLN02490 MPBQ/MSBQ methyltrans 99.8 1.3E-18 2.8E-23 161.7 19.4 147 176-342 112-258 (340)
23 PF08003 Methyltransf_9: Prote 99.8 3.8E-19 8.3E-24 159.1 15.0 172 149-343 97-270 (315)
24 PRK15451 tRNA cmo(5)U34 methyl 99.8 1.9E-18 4.2E-23 155.8 18.2 160 177-340 56-230 (247)
25 KOG4300 Predicted methyltransf 99.8 6.8E-19 1.5E-23 147.3 13.4 176 168-352 67-244 (252)
26 PF02353 CMAS: Mycolic acid cy 99.8 1.3E-18 2.8E-23 158.0 15.5 162 166-343 51-220 (273)
27 PRK11873 arsM arsenite S-adeno 99.8 7.3E-18 1.6E-22 154.4 19.9 156 174-340 74-230 (272)
28 TIGR00740 methyltransferase, p 99.8 3.5E-18 7.5E-23 153.6 17.0 157 177-338 53-225 (239)
29 PF13847 Methyltransf_31: Meth 99.8 1.9E-18 4.1E-23 144.3 13.6 107 177-287 3-112 (152)
30 KOG1270 Methyltransferases [Co 99.8 4.3E-19 9.4E-24 154.3 9.4 150 178-337 90-246 (282)
31 smart00828 PKS_MT Methyltransf 99.8 8.6E-18 1.9E-22 149.5 17.4 146 180-343 2-147 (224)
32 COG2230 Cfa Cyclopropane fatty 99.8 1.6E-17 3.6E-22 148.7 17.7 162 166-343 61-226 (283)
33 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 5.7E-17 1.2E-21 143.8 21.2 178 168-350 30-222 (223)
34 PF07021 MetW: Methionine bios 99.8 2.4E-18 5.2E-23 144.8 11.4 162 167-345 5-172 (193)
35 TIGR02072 BioC biotin biosynth 99.8 2.2E-17 4.7E-22 148.1 16.3 142 177-339 34-175 (240)
36 PRK11207 tellurite resistance 99.8 4E-17 8.7E-22 142.1 17.3 145 168-338 21-168 (197)
37 PRK01683 trans-aconitate 2-met 99.8 4E-17 8.6E-22 148.4 17.8 159 167-335 21-182 (258)
38 PF12847 Methyltransf_18: Meth 99.8 7.3E-18 1.6E-22 133.1 10.4 106 177-285 1-111 (112)
39 TIGR00477 tehB tellurite resis 99.7 6.4E-17 1.4E-21 140.6 15.9 147 167-339 20-168 (195)
40 PRK05134 bifunctional 3-demeth 99.7 1.8E-16 3.8E-21 141.9 18.2 165 166-339 37-204 (233)
41 TIGR02716 C20_methyl_CrtF C-20 99.7 3.3E-16 7.3E-21 145.8 19.9 164 167-338 139-304 (306)
42 PRK06202 hypothetical protein; 99.7 1.8E-16 4E-21 141.7 16.4 160 174-343 57-225 (232)
43 TIGR01983 UbiG ubiquinone bios 99.7 4.8E-16 1.1E-20 138.2 17.6 155 177-340 45-203 (224)
44 TIGR02021 BchM-ChlM magnesium 99.7 3.3E-16 7.2E-21 138.8 16.1 161 166-340 42-206 (219)
45 TIGR02081 metW methionine bios 99.7 4.2E-16 9.1E-21 135.5 15.2 161 167-343 5-170 (194)
46 PRK00107 gidB 16S rRNA methylt 99.7 1.9E-15 4.1E-20 129.8 18.1 125 178-341 46-170 (187)
47 COG4106 Tam Trans-aconitate me 99.7 8.2E-16 1.8E-20 129.9 13.7 159 167-335 20-181 (257)
48 PRK12335 tellurite resistance 99.7 1.3E-15 2.8E-20 140.5 16.4 136 177-338 120-257 (287)
49 PLN02585 magnesium protoporphy 99.7 2.8E-15 6.2E-20 138.6 18.3 166 164-341 128-300 (315)
50 PRK11705 cyclopropane fatty ac 99.7 1.8E-15 4E-20 144.2 17.2 157 166-343 156-315 (383)
51 PF08242 Methyltransf_12: Meth 99.7 1.6E-17 3.5E-22 128.3 2.5 97 182-281 1-99 (99)
52 TIGR03840 TMPT_Se_Te thiopurin 99.7 3.9E-15 8.5E-20 130.7 17.9 138 176-335 33-182 (213)
53 PF13649 Methyltransf_25: Meth 99.7 1.6E-16 3.5E-21 123.2 7.7 95 181-279 1-101 (101)
54 TIGR00537 hemK_rel_arch HemK-r 99.7 7.8E-15 1.7E-19 125.9 17.6 139 168-344 10-169 (179)
55 PRK08287 cobalt-precorrin-6Y C 99.6 1.4E-14 3E-19 125.2 18.3 142 164-343 18-159 (187)
56 PLN02336 phosphoethanolamine N 99.6 4.6E-15 9.9E-20 146.5 16.6 148 167-336 27-178 (475)
57 PRK07580 Mg-protoporphyrin IX 99.6 8.8E-15 1.9E-19 130.6 16.5 163 166-342 49-216 (230)
58 PLN02232 ubiquinone biosynthes 99.6 2E-15 4.3E-20 127.0 11.5 144 205-349 1-158 (160)
59 TIGR03587 Pse_Me-ase pseudamin 99.6 1.7E-14 3.8E-19 125.9 16.9 102 177-289 43-146 (204)
60 TIGR00138 gidB 16S rRNA methyl 99.6 2E-14 4.3E-19 123.2 16.2 101 177-285 42-142 (181)
61 PRK06922 hypothetical protein; 99.6 4.5E-15 9.7E-20 146.3 13.4 107 177-287 418-539 (677)
62 PRK13255 thiopurine S-methyltr 99.6 3.8E-14 8.3E-19 124.9 17.4 141 174-336 34-186 (218)
63 TIGR02469 CbiT precorrin-6Y C5 99.6 1.9E-14 4.2E-19 115.3 14.3 114 167-286 9-123 (124)
64 PRK04266 fibrillarin; Provisio 99.6 3.9E-14 8.5E-19 125.3 16.8 141 172-344 67-214 (226)
65 PRK00121 trmB tRNA (guanine-N( 99.6 1.3E-14 2.7E-19 126.9 12.0 108 177-287 40-158 (202)
66 PF03848 TehB: Tellurite resis 99.6 2.9E-14 6.3E-19 121.8 13.6 143 169-337 22-166 (192)
67 PF05401 NodS: Nodulation prot 99.6 1.7E-14 3.8E-19 121.7 11.6 141 171-341 37-180 (201)
68 PRK13944 protein-L-isoaspartat 99.6 5.7E-14 1.2E-18 123.1 15.0 113 165-285 60-173 (205)
69 PRK14968 putative methyltransf 99.6 1.9E-13 4.1E-18 118.0 17.7 138 167-338 13-171 (188)
70 PRK00517 prmA ribosomal protei 99.6 2.1E-13 4.5E-18 123.2 17.5 140 166-351 110-249 (250)
71 smart00138 MeTrc Methyltransfe 99.6 3E-14 6.5E-19 129.4 12.0 109 177-285 99-242 (264)
72 PRK00377 cbiT cobalt-precorrin 99.5 3.6E-13 7.8E-18 117.4 17.7 118 164-286 27-146 (198)
73 PRK13942 protein-L-isoaspartat 99.5 1.6E-13 3.5E-18 120.8 14.6 113 164-285 63-176 (212)
74 PRK14121 tRNA (guanine-N(7)-)- 99.5 2.9E-13 6.3E-18 127.3 16.7 119 167-288 112-238 (390)
75 TIGR00091 tRNA (guanine-N(7)-) 99.5 5.7E-14 1.2E-18 122.0 11.1 108 178-288 17-135 (194)
76 PLN03075 nicotianamine synthas 99.5 1.4E-13 3.1E-18 124.9 13.9 107 177-285 123-233 (296)
77 KOG1271 Methyltransferases [Ge 99.5 2.7E-13 5.8E-18 111.7 13.9 131 178-341 68-206 (227)
78 PRK14967 putative methyltransf 99.5 1.1E-12 2.4E-17 116.5 18.8 153 174-336 33-208 (223)
79 TIGR03534 RF_mod_PrmC protein- 99.5 7.3E-13 1.6E-17 119.8 17.4 140 163-338 74-239 (251)
80 TIGR00080 pimt protein-L-isoas 99.5 4.3E-13 9.2E-18 118.5 14.9 112 165-285 65-177 (215)
81 PRK11188 rrmJ 23S rRNA methylt 99.5 3.5E-13 7.6E-18 118.2 13.9 101 175-289 49-169 (209)
82 PF05175 MTS: Methyltransferas 99.5 3E-13 6.4E-18 115.0 12.7 117 166-286 20-141 (170)
83 COG2264 PrmA Ribosomal protein 99.5 9.7E-13 2.1E-17 119.1 16.5 157 155-351 142-299 (300)
84 TIGR03438 probable methyltrans 99.5 8.3E-13 1.8E-17 122.5 16.5 107 177-285 63-177 (301)
85 COG4976 Predicted methyltransf 99.5 3.3E-14 7.3E-19 121.2 6.4 158 156-340 105-265 (287)
86 KOG2361 Predicted methyltransf 99.5 8.7E-14 1.9E-18 119.8 8.7 153 179-338 73-235 (264)
87 COG2242 CobL Precorrin-6B meth 99.5 8.3E-12 1.8E-16 104.7 19.3 120 161-287 18-137 (187)
88 PRK09489 rsmC 16S ribosomal RN 99.5 7E-13 1.5E-17 124.5 14.4 115 166-286 185-304 (342)
89 TIGR01177 conserved hypothetic 99.5 1.7E-12 3.7E-17 122.0 16.9 118 165-287 170-296 (329)
90 PF13659 Methyltransf_26: Meth 99.5 3.4E-13 7.4E-18 107.2 9.7 107 178-287 1-117 (117)
91 PTZ00146 fibrillarin; Provisio 99.5 3.5E-12 7.5E-17 115.5 17.1 141 173-342 128-273 (293)
92 PRK15001 SAM-dependent 23S rib 99.5 1.6E-12 3.4E-17 123.0 15.2 119 166-285 217-340 (378)
93 PRK07402 precorrin-6B methylas 99.5 2.4E-12 5.1E-17 112.1 15.3 117 164-287 27-144 (196)
94 TIGR00406 prmA ribosomal prote 99.4 2.3E-12 5.1E-17 118.7 15.6 102 177-286 159-260 (288)
95 PHA03411 putative methyltransf 99.4 3.7E-12 8E-17 114.0 16.1 144 156-334 45-208 (279)
96 PF06325 PrmA: Ribosomal prote 99.4 1.5E-12 3.3E-17 119.0 13.9 150 159-351 145-294 (295)
97 TIGR00536 hemK_fam HemK family 99.4 5.7E-12 1.2E-16 116.0 17.3 121 163-286 99-245 (284)
98 PRK00312 pcm protein-L-isoaspa 99.4 3.4E-12 7.5E-17 112.5 15.1 112 164-286 65-176 (212)
99 TIGR03533 L3_gln_methyl protei 99.4 1E-11 2.2E-16 114.1 18.7 111 172-285 116-251 (284)
100 KOG1541 Predicted protein carb 99.4 7.4E-13 1.6E-17 112.4 9.9 110 167-286 38-161 (270)
101 PRK14966 unknown domain/N5-glu 99.4 9E-12 1.9E-16 118.0 18.3 153 164-353 240-420 (423)
102 PRK13256 thiopurine S-methyltr 99.4 6.2E-12 1.3E-16 110.5 15.5 114 173-288 39-166 (226)
103 PF05148 Methyltransf_8: Hypot 99.4 4.4E-12 9.5E-17 107.9 13.1 157 142-352 40-198 (219)
104 PRK09328 N5-glutamine S-adenos 99.4 1.6E-11 3.4E-16 112.7 17.9 141 163-338 94-260 (275)
105 PF05724 TPMT: Thiopurine S-me 99.4 1.4E-11 3E-16 108.4 16.4 155 164-340 24-190 (218)
106 PRK11805 N5-glutamine S-adenos 99.4 3.6E-11 7.9E-16 111.5 18.2 105 178-285 134-263 (307)
107 PF00891 Methyltransf_2: O-met 99.4 1.2E-11 2.7E-16 111.1 14.6 145 168-329 91-241 (241)
108 COG4123 Predicted O-methyltran 99.4 1.6E-11 3.4E-16 108.5 13.9 117 168-286 35-171 (248)
109 PF01135 PCMT: Protein-L-isoas 99.4 5.4E-12 1.2E-16 110.1 10.6 113 165-286 60-173 (209)
110 KOG3045 Predicted RNA methylas 99.3 2.5E-11 5.5E-16 105.5 13.9 174 124-352 129-304 (325)
111 COG2518 Pcm Protein-L-isoaspar 99.3 2.2E-11 4.7E-16 104.5 13.2 111 165-286 60-170 (209)
112 PRK10901 16S rRNA methyltransf 99.3 4.8E-11 1E-15 116.0 17.0 118 167-288 234-375 (427)
113 cd02440 AdoMet_MTases S-adenos 99.3 2E-11 4.3E-16 93.5 11.2 101 180-284 1-103 (107)
114 PF06080 DUF938: Protein of un 99.3 7.3E-11 1.6E-15 101.1 15.4 172 166-345 15-197 (204)
115 PRK13943 protein-L-isoaspartat 99.3 2.7E-11 5.9E-16 112.5 13.6 111 166-285 69-180 (322)
116 PF08704 GCD14: tRNA methyltra 99.3 1.2E-10 2.5E-15 103.8 17.0 119 163-288 26-149 (247)
117 TIGR00438 rrmJ cell division p 99.3 5.9E-11 1.3E-15 102.6 14.5 103 171-287 26-148 (188)
118 PRK14901 16S rRNA methyltransf 99.3 2.8E-11 6E-16 117.9 13.9 120 166-288 241-387 (434)
119 TIGR00563 rsmB ribosomal RNA s 99.3 3.2E-11 6.9E-16 117.3 13.8 122 165-288 226-371 (426)
120 PF05219 DREV: DREV methyltran 99.3 2.3E-11 5.1E-16 107.0 11.4 97 177-287 94-190 (265)
121 PRK01544 bifunctional N5-gluta 99.3 8.3E-11 1.8E-15 116.3 16.6 104 178-284 139-268 (506)
122 COG2519 GCD14 tRNA(1-methylade 99.3 7.5E-11 1.6E-15 103.3 14.2 116 165-288 82-198 (256)
123 PF05891 Methyltransf_PK: AdoM 99.3 2.7E-11 5.9E-16 104.2 10.7 146 177-341 55-202 (218)
124 PF12147 Methyltransf_20: Puta 99.3 5.9E-10 1.3E-14 99.4 18.3 168 176-351 134-311 (311)
125 TIGR03704 PrmC_rel_meth putati 99.3 3.6E-10 7.8E-15 102.0 17.2 114 166-285 74-216 (251)
126 COG2813 RsmC 16S RNA G1207 met 99.3 1.5E-10 3.3E-15 104.3 14.5 119 163-286 144-267 (300)
127 KOG3010 Methyltransferase [Gen 99.2 6.9E-11 1.5E-15 102.1 11.1 104 179-287 35-139 (261)
128 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.2E-10 2.7E-15 105.9 13.0 115 171-288 65-202 (264)
129 PRK14903 16S rRNA methyltransf 99.2 1.2E-10 2.6E-15 113.1 13.4 120 167-289 227-370 (431)
130 PF02390 Methyltransf_4: Putat 99.2 9.8E-11 2.1E-15 101.4 11.5 100 180-287 20-135 (195)
131 KOG2940 Predicted methyltransf 99.2 3.3E-11 7.1E-16 103.0 8.0 151 178-336 73-223 (325)
132 PF11968 DUF3321: Putative met 99.2 2.6E-10 5.5E-15 97.9 13.4 147 163-353 33-194 (219)
133 smart00650 rADc Ribosomal RNA 99.2 2.3E-10 5E-15 97.1 13.2 109 167-285 3-113 (169)
134 COG2890 HemK Methylase of poly 99.2 6.5E-10 1.4E-14 101.7 17.0 124 180-339 113-262 (280)
135 PF03291 Pox_MCEL: mRNA cappin 99.2 8.2E-11 1.8E-15 109.7 11.0 167 177-344 62-271 (331)
136 PRK04457 spermidine synthase; 99.2 1.3E-10 2.8E-15 105.5 12.0 109 177-287 66-179 (262)
137 PRK14902 16S rRNA methyltransf 99.2 2.3E-10 5E-15 111.9 13.7 117 167-287 240-381 (444)
138 PRK14904 16S rRNA methyltransf 99.2 3.4E-10 7.3E-15 110.7 14.3 118 168-289 241-381 (445)
139 PRK00811 spermidine synthase; 99.2 2.7E-10 5.9E-15 104.6 11.6 109 177-285 76-191 (283)
140 PLN02672 methionine S-methyltr 99.1 1.2E-09 2.5E-14 114.8 16.5 135 178-343 119-306 (1082)
141 COG0220 Predicted S-adenosylme 99.1 5E-10 1.1E-14 98.7 10.7 109 170-287 41-166 (227)
142 PHA03412 putative methyltransf 99.1 9.4E-10 2E-14 96.5 12.3 115 155-280 29-158 (241)
143 KOG1975 mRNA cap methyltransfe 99.1 2.1E-10 4.6E-15 102.9 8.2 112 177-289 117-241 (389)
144 PRK01581 speE spermidine synth 99.1 8.1E-10 1.7E-14 102.8 12.2 107 177-284 150-267 (374)
145 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.3E-09 2.7E-14 112.2 13.6 107 177-285 538-656 (702)
146 PRK03612 spermidine synthase; 99.1 1E-09 2.2E-14 109.2 12.4 109 177-285 297-415 (521)
147 PLN02781 Probable caffeoyl-CoA 99.1 1.3E-09 2.9E-14 97.2 11.6 116 168-288 59-181 (234)
148 PRK15128 23S rRNA m(5)C1962 me 99.1 1.6E-09 3.4E-14 103.8 12.7 107 177-285 220-339 (396)
149 PF07942 N2227: N2227-like pro 99.1 2.4E-09 5.3E-14 96.2 12.6 158 166-340 41-242 (270)
150 PRK13168 rumA 23S rRNA m(5)U19 99.0 5.7E-09 1.2E-13 102.1 15.0 114 163-285 283-400 (443)
151 PRK10909 rsmD 16S rRNA m(2)G96 99.0 7.6E-09 1.7E-13 89.7 13.4 121 162-287 37-161 (199)
152 PLN02366 spermidine synthase 99.0 3.4E-09 7.4E-14 98.0 11.8 108 177-284 91-205 (308)
153 PRK03522 rumB 23S rRNA methylu 99.0 9.6E-09 2.1E-13 96.0 14.9 113 165-285 161-274 (315)
154 TIGR00417 speE spermidine synt 99.0 5.1E-09 1.1E-13 95.7 12.6 108 177-284 72-185 (270)
155 KOG2899 Predicted methyltransf 99.0 2.7E-09 5.9E-14 92.2 10.0 150 177-337 58-254 (288)
156 KOG3178 Hydroxyindole-O-methyl 99.0 8.1E-09 1.8E-13 94.7 12.0 151 179-344 179-334 (342)
157 TIGR00479 rumA 23S rRNA (uraci 99.0 1.3E-08 2.9E-13 99.3 14.3 113 164-284 279-395 (431)
158 COG3963 Phospholipid N-methylt 98.9 2.6E-08 5.6E-13 81.4 13.1 126 155-288 26-159 (194)
159 COG2263 Predicted RNA methylas 98.9 1.5E-08 3.2E-13 85.0 10.9 76 174-257 42-117 (198)
160 COG4122 Predicted O-methyltran 98.9 1.3E-08 2.8E-13 88.8 10.9 116 168-289 50-170 (219)
161 COG2521 Predicted archaeal met 98.9 6.9E-09 1.5E-13 89.3 8.8 147 170-341 127-278 (287)
162 PRK14896 ksgA 16S ribosomal RN 98.9 1.5E-08 3.2E-13 92.0 11.5 87 163-258 15-101 (258)
163 PRK00274 ksgA 16S ribosomal RN 98.9 1E-08 2.2E-13 93.8 10.3 87 162-256 27-113 (272)
164 PF03141 Methyltransf_29: Puta 98.9 1.7E-09 3.6E-14 103.3 4.9 116 161-288 97-222 (506)
165 KOG2904 Predicted methyltransf 98.9 2.6E-08 5.7E-13 87.7 11.9 124 163-288 131-288 (328)
166 PF10294 Methyltransf_16: Puta 98.9 2.2E-08 4.7E-13 85.3 11.1 113 175-288 43-159 (173)
167 PLN02476 O-methyltransferase 98.9 3.2E-08 6.8E-13 89.7 12.3 115 169-288 110-231 (278)
168 PF01170 UPF0020: Putative RNA 98.8 1.7E-07 3.7E-12 80.1 15.8 112 164-277 15-143 (179)
169 TIGR02085 meth_trns_rumB 23S r 98.8 2.9E-08 6.3E-13 94.9 12.0 112 166-285 222-334 (374)
170 PRK10611 chemotaxis methyltran 98.8 2.9E-08 6.3E-13 90.6 10.8 107 178-284 116-261 (287)
171 PRK11727 23S rRNA mA1618 methy 98.8 3.6E-07 7.7E-12 84.8 18.1 154 177-341 114-293 (321)
172 PRK01544 bifunctional N5-gluta 98.8 1.8E-08 3.9E-13 99.7 9.8 107 177-286 347-463 (506)
173 PF01739 CheR: CheR methyltran 98.8 2.1E-08 4.5E-13 86.7 8.8 108 177-284 31-174 (196)
174 TIGR00755 ksgA dimethyladenosi 98.8 1E-07 2.2E-12 86.4 13.6 86 163-257 15-103 (253)
175 PF05185 PRMT5: PRMT5 arginine 98.8 1.2E-07 2.6E-12 92.1 14.8 113 167-282 172-294 (448)
176 PF01596 Methyltransf_3: O-met 98.8 2.9E-08 6.2E-13 86.5 9.0 104 177-285 45-155 (205)
177 KOG1269 SAM-dependent methyltr 98.8 1.6E-08 3.5E-13 95.1 7.9 110 176-288 109-218 (364)
178 PTZ00338 dimethyladenosine tra 98.8 5.4E-08 1.2E-12 89.6 11.1 88 163-256 22-109 (294)
179 PRK04338 N(2),N(2)-dimethylgua 98.8 9.6E-08 2.1E-12 91.1 13.1 100 178-284 58-157 (382)
180 KOG1499 Protein arginine N-met 98.7 4.7E-08 1E-12 89.5 9.6 103 176-282 59-164 (346)
181 COG1041 Predicted DNA modifica 98.7 9.5E-08 2.1E-12 88.0 10.9 119 163-286 183-311 (347)
182 KOG1661 Protein-L-isoaspartate 98.7 1.1E-07 2.4E-12 80.7 10.1 111 167-285 74-193 (237)
183 KOG1331 Predicted methyltransf 98.7 2.7E-08 6E-13 88.5 5.7 98 178-288 46-146 (293)
184 PLN02589 caffeoyl-CoA O-methyl 98.7 1.5E-07 3.2E-12 84.3 10.2 115 167-286 69-191 (247)
185 PRK04148 hypothetical protein; 98.7 3.5E-07 7.5E-12 73.4 11.1 106 166-289 5-113 (134)
186 KOG3191 Predicted N6-DNA-methy 98.6 3.9E-06 8.5E-11 69.8 16.5 128 173-335 39-188 (209)
187 TIGR00095 RNA methyltransferas 98.6 7.3E-07 1.6E-11 76.9 12.4 107 177-287 49-161 (189)
188 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 2.4E-07 5.3E-12 82.9 9.6 148 176-339 55-238 (256)
189 PF02527 GidB: rRNA small subu 98.6 6.3E-07 1.4E-11 76.6 11.8 98 180-285 51-148 (184)
190 KOG2915 tRNA(1-methyladenosine 98.6 2.5E-06 5.5E-11 75.3 15.6 114 166-286 94-211 (314)
191 TIGR00478 tly hemolysin TlyA f 98.6 1.1E-06 2.4E-11 77.7 13.7 144 168-340 65-217 (228)
192 PF02475 Met_10: Met-10+ like- 98.6 2.7E-07 5.9E-12 79.8 9.4 106 167-281 93-198 (200)
193 PRK11933 yebU rRNA (cytosine-C 98.6 7.7E-07 1.7E-11 86.9 13.3 112 174-288 110-245 (470)
194 COG0421 SpeE Spermidine syntha 98.6 4.5E-07 9.8E-12 82.6 10.9 104 179-284 78-189 (282)
195 PF04672 Methyltransf_19: S-ad 98.6 1.5E-06 3.3E-11 77.7 13.6 156 168-337 58-233 (267)
196 PF02384 N6_Mtase: N-6 DNA Met 98.6 3.7E-07 8E-12 85.3 10.1 131 156-287 25-185 (311)
197 PLN02823 spermine synthase 98.6 4.8E-07 1E-11 84.7 10.7 107 177-284 103-219 (336)
198 PRK05031 tRNA (uracil-5-)-meth 98.5 6E-07 1.3E-11 85.4 10.8 112 163-285 193-320 (362)
199 COG0030 KsgA Dimethyladenosine 98.5 7.8E-07 1.7E-11 79.5 10.5 87 163-256 16-103 (259)
200 COG1092 Predicted SAM-dependen 98.5 1.1E-06 2.4E-11 83.3 11.4 107 178-286 218-337 (393)
201 COG1352 CheR Methylase of chem 98.5 1.4E-06 3E-11 78.7 10.7 107 178-284 97-240 (268)
202 KOG1500 Protein arginine N-met 98.5 1.4E-06 3.1E-11 78.9 10.6 104 175-283 175-280 (517)
203 KOG3420 Predicted RNA methylas 98.5 4E-07 8.6E-12 72.7 6.1 85 169-258 40-124 (185)
204 TIGR02143 trmA_only tRNA (urac 98.4 1.4E-06 3.1E-11 82.6 10.8 112 163-285 184-311 (353)
205 COG0500 SmtA SAM-dependent met 98.4 4.7E-06 1E-10 68.5 12.7 104 181-290 52-160 (257)
206 PF10672 Methyltrans_SAM: S-ad 98.4 1.8E-06 4E-11 78.7 10.7 108 177-286 123-239 (286)
207 KOG0820 Ribosomal RNA adenine 98.4 1.7E-06 3.8E-11 76.4 9.9 86 164-255 45-130 (315)
208 TIGR03439 methyl_EasF probable 98.4 8.6E-06 1.9E-10 75.7 14.9 112 168-285 69-197 (319)
209 PRK00050 16S rRNA m(4)C1402 me 98.4 1.1E-06 2.3E-11 80.6 8.3 95 166-265 8-109 (296)
210 PF09243 Rsm22: Mitochondrial 98.4 3.9E-06 8.4E-11 76.7 11.8 117 166-289 22-143 (274)
211 PF03602 Cons_hypoth95: Conser 98.4 1.2E-06 2.6E-11 75.0 7.7 125 160-288 23-156 (183)
212 COG2265 TrmA SAM-dependent met 98.3 4.8E-06 1E-10 80.5 11.8 110 162-285 278-396 (432)
213 PRK00536 speE spermidine synth 98.3 4.9E-06 1.1E-10 75.0 11.0 99 177-285 72-171 (262)
214 PF01564 Spermine_synth: Sperm 98.3 1.7E-06 3.7E-11 77.8 7.8 111 177-287 76-193 (246)
215 KOG3987 Uncharacterized conser 98.3 1.3E-07 2.8E-12 80.0 0.4 110 163-286 95-208 (288)
216 KOG2798 Putative trehalase [Ca 98.3 5.7E-06 1.2E-10 74.5 10.5 158 166-339 135-336 (369)
217 COG0293 FtsJ 23S rRNA methylas 98.3 1.8E-05 3.9E-10 68.1 12.8 100 176-289 44-163 (205)
218 COG2520 Predicted methyltransf 98.3 2.5E-05 5.3E-10 72.8 14.7 116 165-289 178-293 (341)
219 PF08123 DOT1: Histone methyla 98.3 2.3E-06 5.1E-11 74.4 7.5 117 167-284 32-157 (205)
220 TIGR02987 met_A_Alw26 type II 98.2 8.7E-06 1.9E-10 81.6 11.7 97 157-256 4-120 (524)
221 COG0144 Sun tRNA and rRNA cyto 98.2 2.3E-05 5E-10 74.3 13.4 119 167-288 146-291 (355)
222 COG4627 Uncharacterized protei 98.2 5.6E-07 1.2E-11 72.7 1.9 59 231-289 30-90 (185)
223 PRK11783 rlmL 23S rRNA m(2)G24 98.2 3.1E-05 6.6E-10 80.1 14.3 139 146-288 160-350 (702)
224 KOG1663 O-methyltransferase [S 98.2 2.9E-05 6.4E-10 67.3 11.5 113 167-285 63-183 (237)
225 COG2835 Uncharacterized conser 98.2 1.2E-06 2.6E-11 58.7 2.3 46 67-121 4-49 (60)
226 PF00398 RrnaAD: Ribosomal RNA 98.1 1.5E-05 3.2E-10 72.6 10.0 105 163-277 16-123 (262)
227 COG4798 Predicted methyltransf 98.1 2.3E-05 5E-10 66.0 10.1 152 168-338 39-203 (238)
228 PF01728 FtsJ: FtsJ-like methy 98.1 4.1E-06 9E-11 71.8 5.8 97 177-287 23-141 (181)
229 COG0742 N6-adenine-specific me 98.1 6E-05 1.3E-09 64.0 12.6 125 160-287 24-156 (187)
230 COG0357 GidB Predicted S-adeno 98.1 3.5E-05 7.5E-10 67.2 11.3 130 178-342 68-197 (215)
231 PRK11827 hypothetical protein; 98.1 1.6E-06 3.4E-11 58.9 1.9 46 67-121 4-49 (60)
232 PF04816 DUF633: Family of unk 98.1 5.6E-05 1.2E-09 65.8 12.0 123 181-340 1-124 (205)
233 KOG2352 Predicted spermine/spe 98.1 3.8E-05 8.3E-10 73.6 11.4 102 180-286 51-162 (482)
234 TIGR00308 TRM1 tRNA(guanine-26 98.0 7.8E-05 1.7E-09 71.0 12.7 102 178-286 45-148 (374)
235 KOG3115 Methyltransferase-like 98.0 2E-05 4.3E-10 66.8 7.5 107 178-287 61-185 (249)
236 COG0116 Predicted N6-adenine-s 98.0 0.00012 2.6E-09 68.8 13.3 138 145-286 161-345 (381)
237 KOG3201 Uncharacterized conser 98.0 6.9E-06 1.5E-10 67.0 4.2 123 166-288 18-143 (201)
238 PF13679 Methyltransf_32: Meth 97.9 0.00012 2.6E-09 60.0 10.8 105 176-287 24-133 (141)
239 PF05958 tRNA_U5-meth_tr: tRNA 97.9 3.7E-05 8.1E-10 72.9 8.8 73 163-241 183-255 (352)
240 PRK11760 putative 23S rRNA C24 97.9 0.0001 2.2E-09 68.2 11.1 87 176-278 210-296 (357)
241 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.9 6.7E-05 1.5E-09 68.9 9.8 116 168-286 76-220 (283)
242 PF09445 Methyltransf_15: RNA 97.9 1.9E-05 4.1E-10 65.8 5.5 72 180-255 2-76 (163)
243 KOG1709 Guanidinoacetate methy 97.9 5.6E-05 1.2E-09 64.7 7.6 104 176-284 100-205 (271)
244 PF01269 Fibrillarin: Fibrilla 97.9 0.00028 6.2E-09 61.2 12.1 107 173-287 69-180 (229)
245 TIGR00006 S-adenosyl-methyltra 97.8 0.00011 2.5E-09 67.5 9.8 97 165-265 8-111 (305)
246 COG3897 Predicted methyltransf 97.8 9.2E-05 2E-09 62.6 8.3 113 167-288 69-182 (218)
247 PF07091 FmrO: Ribosomal RNA m 97.8 0.00026 5.7E-09 62.6 10.7 153 163-344 93-247 (251)
248 COG4262 Predicted spermidine s 97.8 0.00032 6.9E-09 64.8 11.3 103 178-285 290-407 (508)
249 COG2384 Predicted SAM-dependen 97.7 0.0015 3.3E-08 56.5 14.2 136 166-339 7-142 (226)
250 TIGR01444 fkbM_fam methyltrans 97.7 0.00015 3.2E-09 59.4 7.9 59 180-241 1-59 (143)
251 PF03059 NAS: Nicotianamine sy 97.6 0.00075 1.6E-08 61.2 11.7 107 178-285 121-230 (276)
252 COG1189 Predicted rRNA methyla 97.6 0.0015 3.3E-08 57.2 13.1 142 175-339 77-223 (245)
253 PF03966 Trm112p: Trm112p-like 97.6 3E-05 6.4E-10 55.0 1.7 47 67-113 3-68 (68)
254 COG4076 Predicted RNA methylas 97.5 0.00018 3.8E-09 60.4 5.6 97 179-282 34-132 (252)
255 KOG4589 Cell division protein 97.5 0.001 2.2E-08 55.9 9.9 100 176-289 68-188 (232)
256 KOG2187 tRNA uracil-5-methyltr 97.5 0.00013 2.8E-09 70.3 5.2 76 161-241 367-442 (534)
257 COG1889 NOP1 Fibrillarin-like 97.5 0.0063 1.4E-07 52.0 14.3 105 173-287 72-182 (231)
258 PF03269 DUF268: Caenorhabditi 97.4 0.0003 6.5E-09 57.6 5.3 135 178-344 2-149 (177)
259 PF13578 Methyltransf_24: Meth 97.3 7.5E-05 1.6E-09 57.9 0.6 100 182-285 1-105 (106)
260 KOG1122 tRNA and rRNA cytosine 97.2 0.0021 4.6E-08 60.6 9.3 112 173-288 237-374 (460)
261 PF06962 rRNA_methylase: Putat 97.2 0.0022 4.8E-08 51.9 8.0 82 203-288 1-95 (140)
262 KOG2730 Methylase [General fun 97.1 0.00057 1.2E-08 58.9 4.1 91 161-255 77-172 (263)
263 COG0286 HsdM Type I restrictio 97.1 0.0072 1.6E-07 59.9 12.3 130 157-288 166-329 (489)
264 PLN02668 indole-3-acetate carb 97.0 0.029 6.3E-07 53.4 14.8 159 178-336 64-304 (386)
265 PF01795 Methyltransf_5: MraW 96.9 0.0019 4.2E-08 59.4 6.4 86 166-255 9-100 (310)
266 PF03141 Methyltransf_29: Puta 96.9 0.0016 3.5E-08 63.0 5.9 96 177-285 365-467 (506)
267 PF05971 Methyltransf_10: Prot 96.9 0.0054 1.2E-07 56.3 8.9 97 164-261 84-190 (299)
268 KOG4058 Uncharacterized conser 96.8 0.0044 9.5E-08 50.1 6.4 119 158-284 53-171 (199)
269 TIGR00027 mthyl_TIGR00027 meth 96.8 0.074 1.6E-06 48.3 15.2 166 168-338 73-248 (260)
270 COG5459 Predicted rRNA methyla 96.7 0.006 1.3E-07 56.3 7.4 119 168-289 104-229 (484)
271 PF01861 DUF43: Protein of unk 96.7 0.13 2.9E-06 45.4 15.5 98 177-280 44-143 (243)
272 PRK10742 putative methyltransf 96.7 0.013 2.8E-07 52.2 9.2 92 167-260 76-176 (250)
273 PF11599 AviRa: RRNA methyltra 96.6 0.033 7.1E-07 48.1 10.8 119 166-284 40-213 (246)
274 PF03492 Methyltransf_7: SAM d 96.6 0.14 2.9E-06 48.4 16.1 157 177-333 16-245 (334)
275 COG0275 Predicted S-adenosylme 96.6 0.019 4.1E-07 52.2 9.6 88 164-255 10-103 (314)
276 PF04989 CmcI: Cephalosporin h 96.6 0.0068 1.5E-07 52.4 6.5 105 178-287 33-149 (206)
277 PF13719 zinc_ribbon_5: zinc-r 96.5 0.0015 3.3E-08 40.1 1.8 36 70-109 1-36 (37)
278 KOG2198 tRNA cytosine-5-methyl 96.5 0.031 6.8E-07 52.2 11.0 114 172-288 150-299 (375)
279 PF06859 Bin3: Bicoid-interact 96.5 0.00082 1.8E-08 51.7 0.4 84 248-340 1-92 (110)
280 KOG2793 Putative N2,N2-dimethy 96.3 0.035 7.7E-07 49.5 9.9 112 177-289 86-203 (248)
281 COG1565 Uncharacterized conser 96.2 0.24 5.1E-06 46.5 14.7 167 174-341 74-306 (370)
282 PF13717 zinc_ribbon_4: zinc-r 96.1 0.0037 8.1E-08 38.1 1.9 35 70-108 1-35 (36)
283 COG1064 AdhP Zn-dependent alco 96.1 0.052 1.1E-06 50.7 9.9 98 173-287 162-261 (339)
284 COG1063 Tdh Threonine dehydrog 95.9 0.14 3.1E-06 48.6 12.8 98 177-289 168-273 (350)
285 KOG1099 SAM-dependent methyltr 95.8 0.026 5.7E-07 49.1 6.3 97 179-289 43-167 (294)
286 PF04445 SAM_MT: Putative SAM- 95.8 0.033 7.2E-07 49.3 7.0 92 167-260 63-163 (234)
287 PRK01747 mnmC bifunctional tRN 95.8 0.05 1.1E-06 56.3 9.5 132 177-343 57-230 (662)
288 cd08283 FDH_like_1 Glutathione 95.6 0.17 3.7E-06 48.7 12.1 106 172-286 179-307 (386)
289 PRK00420 hypothetical protein; 95.6 0.0073 1.6E-07 46.8 2.0 30 72-111 24-53 (112)
290 TIGR02098 MJ0042_CXXC MJ0042 f 95.5 0.0088 1.9E-07 36.9 1.6 36 70-109 1-36 (38)
291 PF02636 Methyltransf_28: Puta 95.4 0.053 1.2E-06 49.0 7.3 79 178-261 19-108 (252)
292 PF07757 AdoMet_MTase: Predict 95.4 0.02 4.3E-07 43.9 3.7 33 177-211 58-90 (112)
293 KOG1596 Fibrillarin and relate 95.4 0.084 1.8E-06 46.4 7.9 98 175-286 154-262 (317)
294 PF02005 TRM: N2,N2-dimethylgu 95.4 0.08 1.7E-06 50.7 8.6 103 178-286 50-155 (377)
295 KOG1562 Spermidine synthase [A 95.4 0.046 1E-06 49.5 6.5 104 177-285 121-236 (337)
296 PHA01634 hypothetical protein 95.2 0.15 3.2E-06 40.4 8.1 46 177-223 28-73 (156)
297 PRK09424 pntA NAD(P) transhydr 95.1 0.31 6.8E-06 48.4 12.0 101 175-286 162-286 (509)
298 PRK09880 L-idonate 5-dehydroge 94.9 0.24 5.2E-06 46.7 10.4 98 174-286 166-267 (343)
299 KOG0822 Protein kinase inhibit 94.8 0.15 3.2E-06 49.9 8.5 102 178-284 368-477 (649)
300 COG1645 Uncharacterized Zn-fin 94.7 0.017 3.8E-07 45.7 1.7 25 72-107 29-53 (131)
301 COG3129 Predicted SAM-dependen 94.7 0.14 3E-06 44.9 7.2 105 155-260 50-165 (292)
302 PRK11524 putative methyltransf 94.6 0.14 3.1E-06 47.1 7.7 59 162-223 194-252 (284)
303 PF14803 Nudix_N_2: Nudix N-te 94.5 0.022 4.7E-07 34.1 1.4 29 74-107 3-31 (34)
304 PF08271 TF_Zn_Ribbon: TFIIB z 94.5 0.026 5.6E-07 35.9 1.9 31 72-110 1-31 (43)
305 KOG0024 Sorbitol dehydrogenase 94.5 0.67 1.5E-05 42.8 11.5 105 171-289 163-277 (354)
306 TIGR01206 lysW lysine biosynth 94.4 0.03 6.5E-07 37.4 2.0 33 71-110 2-34 (54)
307 KOG1088 Uncharacterized conser 94.4 0.02 4.3E-07 44.0 1.3 27 94-120 94-120 (124)
308 PF08274 PhnA_Zn_Ribbon: PhnA 94.3 0.025 5.4E-07 32.8 1.3 27 72-108 3-29 (30)
309 COG3315 O-Methyltransferase in 94.2 0.87 1.9E-05 42.1 12.1 169 167-338 83-262 (297)
310 PF01555 N6_N4_Mtase: DNA meth 94.2 0.15 3.2E-06 44.7 6.8 56 161-219 176-231 (231)
311 PRK13699 putative methylase; P 94.2 0.22 4.8E-06 44.2 7.8 61 161-224 148-208 (227)
312 PRK09678 DNA-binding transcrip 94.2 0.044 9.5E-07 38.9 2.6 50 71-121 1-52 (72)
313 KOG2539 Mitochondrial/chloropl 94.1 0.097 2.1E-06 50.4 5.5 109 177-288 200-318 (491)
314 COG1997 RPL43A Ribosomal prote 94.1 0.033 7.2E-07 40.5 1.8 32 70-110 34-65 (89)
315 COG1867 TRM1 N2,N2-dimethylgua 94.0 0.48 1E-05 44.5 9.8 103 178-287 53-156 (380)
316 COG3510 CmcI Cephalosporin hyd 94.0 0.34 7.4E-06 41.2 8.0 107 177-291 69-186 (237)
317 KOG2671 Putative RNA methylase 94.0 0.17 3.6E-06 46.9 6.6 123 163-288 193-357 (421)
318 PF03514 GRAS: GRAS domain fam 93.9 1.2 2.5E-05 42.8 12.7 121 167-288 100-246 (374)
319 KOG1501 Arginine N-methyltrans 93.9 0.13 2.8E-06 49.1 5.9 61 179-242 68-128 (636)
320 PRK00464 nrdR transcriptional 93.8 0.037 8E-07 45.7 1.9 40 72-111 1-41 (154)
321 PF05430 Methyltransf_30: S-ad 93.8 0.11 2.3E-06 41.5 4.5 87 230-351 31-123 (124)
322 KOG2920 Predicted methyltransf 93.7 0.073 1.6E-06 48.1 3.8 107 177-284 116-233 (282)
323 PF10571 UPF0547: Uncharacteri 93.6 0.04 8.6E-07 30.8 1.3 24 73-109 2-25 (26)
324 cd08237 ribitol-5-phosphate_DH 93.3 0.65 1.4E-05 43.8 9.9 95 175-286 161-257 (341)
325 COG3809 Uncharacterized protei 93.3 0.044 9.5E-07 38.9 1.3 37 71-114 1-37 (88)
326 PRK00398 rpoP DNA-directed RNA 93.2 0.093 2E-06 33.8 2.8 32 70-110 2-33 (46)
327 PF09297 zf-NADH-PPase: NADH p 93.2 0.061 1.3E-06 31.7 1.7 27 73-108 5-31 (32)
328 PRK13699 putative methylase; P 93.1 0.22 4.8E-06 44.2 5.9 51 233-283 3-70 (227)
329 PF10354 DUF2431: Domain of un 93.1 1.6 3.5E-05 36.7 10.7 127 184-343 3-155 (166)
330 cd00315 Cyt_C5_DNA_methylase C 93.1 0.31 6.8E-06 44.6 7.0 68 180-257 2-71 (275)
331 PHA00626 hypothetical protein 92.9 0.071 1.5E-06 35.3 1.7 34 72-110 1-35 (59)
332 TIGR00497 hsdM type I restrict 92.8 1.6 3.5E-05 43.6 12.2 130 157-287 195-357 (501)
333 COG1568 Predicted methyltransf 92.7 1.5 3.2E-05 39.7 10.3 96 177-285 152-260 (354)
334 PF09862 DUF2089: Protein of u 92.7 0.056 1.2E-06 42.0 1.3 24 74-110 1-24 (113)
335 TIGR00561 pntA NAD(P) transhyd 92.7 0.57 1.2E-05 46.6 8.6 96 176-282 162-281 (511)
336 COG4301 Uncharacterized conser 92.6 3.5 7.5E-05 36.8 12.3 107 177-286 78-194 (321)
337 PF14446 Prok-RING_1: Prokaryo 92.5 0.08 1.7E-06 35.1 1.6 28 72-110 6-33 (54)
338 COG1198 PriA Primosomal protei 92.4 1.6 3.5E-05 45.2 11.7 109 179-290 484-605 (730)
339 KOG1227 Putative methyltransfe 92.3 0.13 2.8E-06 46.8 3.2 102 178-287 195-298 (351)
340 PTZ00357 methyltransferase; Pr 92.3 0.76 1.6E-05 46.6 8.8 100 180-280 703-830 (1072)
341 cd08254 hydroxyacyl_CoA_DH 6-h 91.9 2.7 5.8E-05 39.1 12.0 96 174-286 162-264 (338)
342 TIGR00595 priA primosomal prot 91.8 4.3 9.4E-05 40.6 13.7 33 179-211 262-294 (505)
343 COG1656 Uncharacterized conser 91.7 0.072 1.6E-06 44.0 0.9 42 69-110 95-142 (165)
344 PRK00432 30S ribosomal protein 91.6 0.12 2.6E-06 34.0 1.8 27 73-109 22-48 (50)
345 cd08230 glucose_DH Glucose deh 91.4 2.1 4.6E-05 40.5 10.8 94 175-286 170-270 (355)
346 TIGR01202 bchC 2-desacetyl-2-h 91.3 1.5 3.2E-05 40.7 9.4 88 177-286 144-232 (308)
347 PRK05580 primosome assembly pr 91.2 3.9 8.5E-05 42.5 13.1 31 180-210 431-461 (679)
348 TIGR02822 adh_fam_2 zinc-bindi 91.2 3.8 8.3E-05 38.3 12.1 94 173-286 161-255 (329)
349 PF00107 ADH_zinc_N: Zinc-bind 91.1 1.4 3.1E-05 34.7 8.0 86 187-288 1-92 (130)
350 TIGR03451 mycoS_dep_FDH mycoth 90.9 3.8 8.3E-05 38.7 12.0 97 174-285 173-276 (358)
351 smart00659 RPOLCX RNA polymera 90.8 0.23 5E-06 31.7 2.3 29 71-109 2-30 (44)
352 PRK14873 primosome assembly pr 90.7 3.8 8.2E-05 42.4 12.3 96 178-285 430-536 (665)
353 PF07191 zinc-ribbons_6: zinc- 90.6 0.14 3.1E-06 35.9 1.4 28 72-110 2-29 (70)
354 PRK10220 hypothetical protein; 90.5 0.22 4.7E-06 38.0 2.4 31 71-111 3-33 (111)
355 PF09538 FYDLN_acid: Protein o 90.5 0.15 3.3E-06 39.4 1.6 33 69-111 7-39 (108)
356 TIGR00686 phnA alkylphosphonat 90.3 0.21 4.5E-06 38.1 2.1 30 72-111 3-32 (109)
357 smart00661 RPOL9 RNA polymeras 90.0 0.35 7.7E-06 31.8 2.9 33 73-112 2-34 (52)
358 cd08281 liver_ADH_like1 Zinc-d 89.9 4.1 8.8E-05 38.8 11.3 99 172-285 186-290 (371)
359 PF11781 RRN7: RNA polymerase 89.7 0.19 4.1E-06 30.5 1.3 28 70-107 7-34 (36)
360 KOG2352 Predicted spermine/spe 89.7 0.44 9.5E-06 46.4 4.3 110 177-290 295-421 (482)
361 KOG1253 tRNA methyltransferase 89.5 0.39 8.4E-06 46.7 3.8 105 177-287 109-218 (525)
362 PF02150 RNA_POL_M_15KD: RNA p 89.4 0.27 5.9E-06 29.7 1.7 32 72-111 2-33 (35)
363 COG2933 Predicted SAM-dependen 89.2 1.8 4E-05 38.8 7.4 87 176-278 210-296 (358)
364 PF14353 CpXC: CpXC protein 89.0 0.22 4.7E-06 39.9 1.5 40 72-111 2-51 (128)
365 PF13453 zf-TFIIB: Transcripti 89.0 0.21 4.5E-06 31.3 1.1 32 73-111 1-32 (41)
366 TIGR03366 HpnZ_proposed putati 89.0 5.6 0.00012 36.2 11.0 98 174-286 117-219 (280)
367 PF06677 Auto_anti-p27: Sjogre 88.9 0.3 6.5E-06 30.6 1.7 24 72-105 18-41 (41)
368 KOG3924 Putative protein methy 88.9 2.3 4.9E-05 40.4 8.2 123 166-289 181-312 (419)
369 cd05188 MDR Medium chain reduc 88.9 5.4 0.00012 35.4 10.8 96 176-287 133-234 (271)
370 COG3677 Transposase and inacti 88.8 0.26 5.5E-06 39.6 1.8 42 70-115 29-70 (129)
371 PF03119 DNA_ligase_ZBD: NAD-d 88.7 0.25 5.5E-06 28.2 1.2 22 73-103 1-22 (28)
372 PF01096 TFIIS_C: Transcriptio 88.7 0.2 4.2E-06 31.1 0.8 36 73-108 2-38 (39)
373 PF01927 Mut7-C: Mut7-C RNAse 88.5 0.27 5.9E-06 40.5 1.8 40 71-110 91-136 (147)
374 PF13240 zinc_ribbon_2: zinc-r 88.3 0.25 5.5E-06 26.7 1.0 21 74-107 2-22 (23)
375 PF11312 DUF3115: Protein of u 88.2 0.99 2.1E-05 41.6 5.4 110 178-287 87-244 (315)
376 PF04606 Ogr_Delta: Ogr/Delta- 87.9 0.23 5.1E-06 32.2 0.8 39 73-112 1-41 (47)
377 PLN02740 Alcohol dehydrogenase 87.8 8.1 0.00018 36.9 11.8 98 173-285 194-300 (381)
378 cd08239 THR_DH_like L-threonin 87.8 14 0.0003 34.5 13.2 99 172-286 158-263 (339)
379 cd08232 idonate-5-DH L-idonate 87.7 7.8 0.00017 36.1 11.4 94 177-285 165-262 (339)
380 PF08792 A2L_zn_ribbon: A2L zi 87.7 0.55 1.2E-05 27.9 2.2 30 71-109 3-32 (33)
381 PF13248 zf-ribbon_3: zinc-rib 87.6 0.29 6.2E-06 27.3 1.0 23 71-106 2-24 (26)
382 KOG2651 rRNA adenine N-6-methy 87.3 1.9 4.1E-05 40.8 6.6 42 177-219 153-194 (476)
383 TIGR02300 FYDLN_acid conserved 87.3 0.36 7.8E-06 38.0 1.7 31 70-110 8-38 (129)
384 COG1326 Uncharacterized archae 87.2 0.28 6.1E-06 41.5 1.1 37 71-110 6-42 (201)
385 PRK11524 putative methyltransf 87.0 0.52 1.1E-05 43.3 2.9 56 230-285 7-80 (284)
386 PF03604 DNA_RNApol_7kD: DNA d 87.0 0.49 1.1E-05 27.9 1.7 27 72-108 1-27 (32)
387 smart00440 ZnF_C2C2 C2C2 Zinc 86.6 0.42 9.1E-06 29.8 1.4 36 73-108 2-38 (40)
388 PF05711 TylF: Macrocin-O-meth 86.5 2.9 6.3E-05 37.5 7.3 110 175-287 72-214 (248)
389 KOG2906 RNA polymerase III sub 86.0 0.39 8.5E-06 35.8 1.2 34 71-111 1-34 (105)
390 PF03811 Zn_Tnp_IS1: InsA N-te 85.8 0.83 1.8E-05 27.7 2.3 32 71-105 5-36 (36)
391 PF07754 DUF1610: Domain of un 85.7 0.71 1.5E-05 25.2 1.8 23 74-105 1-23 (24)
392 PHA02768 hypothetical protein; 85.6 0.31 6.7E-06 32.6 0.4 43 71-115 5-48 (55)
393 PF11899 DUF3419: Protein of u 85.5 1 2.2E-05 43.1 4.1 61 219-283 268-332 (380)
394 PF05206 TRM13: Methyltransfer 85.4 3.5 7.6E-05 37.3 7.3 66 175-243 16-86 (259)
395 PRK06266 transcription initiat 85.3 0.41 8.8E-06 40.7 1.2 35 65-107 111-145 (178)
396 COG1062 AdhC Zn-dependent alco 85.3 12 0.00026 35.2 10.6 105 167-286 175-286 (366)
397 smart00531 TFIIE Transcription 85.1 0.44 9.5E-06 39.2 1.3 39 67-108 95-133 (147)
398 PF01780 Ribosomal_L37ae: Ribo 85.0 0.52 1.1E-05 34.9 1.4 32 70-110 34-65 (90)
399 PRK05786 fabG 3-ketoacyl-(acyl 84.9 19 0.00042 31.3 11.9 103 178-287 5-137 (238)
400 TIGR00373 conserved hypothetic 84.8 0.4 8.8E-06 39.9 0.9 35 65-107 103-137 (158)
401 TIGR02819 fdhA_non_GSH formald 84.6 14 0.0003 35.6 11.6 105 173-286 181-300 (393)
402 cd00401 AdoHcyase S-adenosyl-L 84.4 7.8 0.00017 37.6 9.6 98 167-285 190-289 (413)
403 PF14205 Cys_rich_KTR: Cystein 84.3 0.79 1.7E-05 30.3 1.9 36 72-110 5-40 (55)
404 smart00834 CxxC_CXXC_SSSS Puta 84.3 0.67 1.5E-05 28.7 1.6 31 70-106 4-34 (41)
405 COG0686 Ald Alanine dehydrogen 84.3 4 8.6E-05 37.7 7.0 98 177-282 167-265 (371)
406 PLN02586 probable cinnamyl alc 84.2 8.6 0.00019 36.5 9.9 95 176-285 182-278 (360)
407 COG1327 Predicted transcriptio 84.0 0.57 1.2E-05 38.1 1.4 39 72-110 1-40 (156)
408 PRK14892 putative transcriptio 83.9 1.1 2.4E-05 34.0 2.8 40 65-110 15-54 (99)
409 KOG2782 Putative SAM dependent 83.7 0.66 1.4E-05 40.3 1.7 92 165-259 31-129 (303)
410 KOG3507 DNA-directed RNA polym 83.7 1.3 2.8E-05 29.7 2.7 34 66-109 15-48 (62)
411 cd05213 NAD_bind_Glutamyl_tRNA 83.6 20 0.00042 33.4 11.8 133 167-330 167-302 (311)
412 COG3877 Uncharacterized protei 83.0 0.61 1.3E-05 35.3 1.1 28 70-110 5-32 (122)
413 PF02254 TrkA_N: TrkA-N domain 83.0 14 0.00031 28.3 9.2 86 186-286 4-97 (116)
414 PRK12495 hypothetical protein; 82.8 0.75 1.6E-05 39.8 1.7 33 67-110 38-70 (226)
415 TIGR01384 TFS_arch transcripti 82.6 0.82 1.8E-05 35.1 1.8 27 73-110 2-28 (104)
416 COG1096 Predicted RNA-binding 82.5 0.81 1.8E-05 38.7 1.8 28 72-110 150-177 (188)
417 PLN02827 Alcohol dehydrogenase 82.5 19 0.00042 34.3 11.6 96 174-284 190-294 (378)
418 cd00350 rubredoxin_like Rubred 82.4 0.95 2.1E-05 26.8 1.6 24 72-106 2-25 (33)
419 PF09986 DUF2225: Uncharacteri 82.3 0.97 2.1E-05 39.7 2.3 41 70-110 4-60 (214)
420 TIGR02818 adh_III_F_hyde S-(hy 82.2 23 0.00051 33.6 12.0 101 172-286 180-288 (368)
421 TIGR00244 transcriptional regu 82.1 0.82 1.8E-05 37.2 1.6 39 72-110 1-40 (147)
422 COG1998 RPS31 Ribosomal protei 82.0 0.88 1.9E-05 29.4 1.4 26 73-108 21-47 (51)
423 KOG0821 Predicted ribosomal RN 82.0 4.2 9.2E-05 35.5 6.0 72 166-242 39-110 (326)
424 PF10237 N6-adenineMlase: Prob 81.9 15 0.00032 30.7 9.1 105 165-286 11-124 (162)
425 PRK07806 short chain dehydroge 81.9 27 0.00059 30.7 11.7 102 178-285 6-134 (248)
426 PF07282 OrfB_Zn_ribbon: Putat 81.9 0.89 1.9E-05 31.9 1.6 31 70-109 27-57 (69)
427 PRK10309 galactitol-1-phosphat 81.8 21 0.00045 33.5 11.4 98 174-286 157-261 (347)
428 COG4888 Uncharacterized Zn rib 81.7 0.68 1.5E-05 34.7 1.0 40 68-110 19-58 (104)
429 TIGR03655 anti_R_Lar restricti 81.7 1.1 2.5E-05 29.7 1.9 36 72-110 2-38 (53)
430 PF00145 DNA_methylase: C-5 cy 81.6 13 0.00027 34.5 9.8 66 180-257 2-70 (335)
431 COG1571 Predicted DNA-binding 81.6 0.82 1.8E-05 43.8 1.7 34 68-111 347-380 (421)
432 PF14740 DUF4471: Domain of un 81.6 2.5 5.5E-05 38.7 4.8 67 246-337 220-286 (289)
433 PF08996 zf-DNA_Pol: DNA Polym 81.5 0.89 1.9E-05 39.1 1.7 45 65-109 12-56 (188)
434 PF04072 LCM: Leucine carboxyl 81.1 3.5 7.6E-05 35.1 5.4 95 167-262 67-171 (183)
435 TIGR00280 L37a ribosomal prote 81.0 0.87 1.9E-05 33.8 1.3 32 70-110 34-65 (91)
436 PTZ00255 60S ribosomal protein 80.9 0.98 2.1E-05 33.5 1.5 32 70-110 35-66 (90)
437 KOG1269 SAM-dependent methyltr 80.8 5.3 0.00011 38.1 6.8 108 178-289 181-317 (364)
438 cd08245 CAD Cinnamyl alcohol d 80.7 23 0.00051 32.7 11.3 97 173-285 158-256 (330)
439 PRK10458 DNA cytosine methylas 80.6 31 0.00067 34.2 12.2 73 164-242 68-146 (467)
440 PF02737 3HCDH_N: 3-hydroxyacy 80.5 35 0.00075 28.9 11.6 101 180-288 1-117 (180)
441 TIGR02825 B4_12hDH leukotriene 80.1 35 0.00075 31.6 12.2 98 171-285 132-237 (325)
442 PLN03154 putative allyl alcoho 80.0 31 0.00066 32.5 11.9 98 172-285 153-258 (348)
443 PRK07109 short chain dehydroge 79.7 33 0.00072 32.1 12.0 76 177-258 7-95 (334)
444 cd05278 FDH_like Formaldehyde 79.7 22 0.00047 33.1 10.8 97 174-285 164-267 (347)
445 cd08285 NADP_ADH NADP(H)-depen 79.6 28 0.0006 32.6 11.5 98 173-285 162-266 (351)
446 PF02153 PDH: Prephenate dehyd 79.6 3.7 8.1E-05 37.1 5.3 29 191-219 1-29 (258)
447 PF05050 Methyltransf_21: Meth 79.5 4 8.8E-05 33.5 5.1 38 183-220 1-42 (167)
448 PRK08324 short chain dehydroge 79.5 23 0.00049 37.0 11.6 103 177-286 421-558 (681)
449 PRK12939 short chain dehydroge 79.4 18 0.00038 31.8 9.6 75 178-258 7-94 (250)
450 smart00778 Prim_Zn_Ribbon Zinc 79.3 2 4.3E-05 26.2 2.3 30 72-106 4-33 (37)
451 PF05129 Elf1: Transcription e 79.1 0.84 1.8E-05 33.4 0.7 44 65-111 16-59 (81)
452 COG2888 Predicted Zn-ribbon RN 79.0 1.3 2.7E-05 29.9 1.4 38 65-107 21-59 (61)
453 cd08300 alcohol_DH_class_III c 79.0 35 0.00076 32.3 12.1 99 173-286 182-289 (368)
454 cd08294 leukotriene_B4_DH_like 78.9 39 0.00084 31.1 12.1 98 171-285 137-241 (329)
455 PF07279 DUF1442: Protein of u 78.8 44 0.00096 29.2 11.3 102 176-285 40-148 (218)
456 COG0270 Dcm Site-specific DNA 78.8 22 0.00048 33.4 10.4 122 179-334 4-141 (328)
457 PRK03976 rpl37ae 50S ribosomal 78.8 1.1 2.4E-05 33.2 1.3 32 70-110 35-66 (90)
458 PRK06701 short chain dehydroge 78.5 25 0.00054 32.2 10.5 104 177-286 45-182 (290)
459 PRK07819 3-hydroxybutyryl-CoA 78.4 5.6 0.00012 36.6 6.1 100 179-286 6-122 (286)
460 cd08234 threonine_DH_like L-th 78.4 27 0.00058 32.3 10.9 99 172-286 154-258 (334)
461 COG0287 TyrA Prephenate dehydr 78.1 9.3 0.0002 35.0 7.3 89 179-282 4-95 (279)
462 COG4306 Uncharacterized protei 78.0 1.2 2.5E-05 34.9 1.2 47 65-111 33-81 (160)
463 PRK14890 putative Zn-ribbon RN 77.8 1.4 3E-05 29.8 1.4 35 68-107 22-57 (59)
464 PRK07576 short chain dehydroge 77.7 28 0.0006 31.2 10.5 75 177-257 8-95 (264)
465 PF12760 Zn_Tnp_IS1595: Transp 77.7 1.7 3.7E-05 27.9 1.8 27 72-106 19-45 (46)
466 COG1996 RPC10 DNA-directed RNA 77.7 1.5 3.2E-05 28.6 1.4 33 69-110 4-36 (49)
467 COG1592 Rubrerythrin [Energy p 77.7 1.6 3.4E-05 36.5 2.0 25 71-107 134-158 (166)
468 PF14354 Lar_restr_allev: Rest 77.6 1.7 3.7E-05 29.6 1.9 35 70-106 2-37 (61)
469 PF11253 DUF3052: Protein of u 77.6 27 0.00059 27.7 8.7 72 246-343 43-114 (127)
470 cd05285 sorbitol_DH Sorbitol d 77.6 42 0.0009 31.3 12.0 99 171-285 156-265 (343)
471 PRK08339 short chain dehydroge 77.5 51 0.0011 29.5 12.2 76 178-258 8-95 (263)
472 PRK12380 hydrogenase nickel in 77.3 1.6 3.4E-05 34.2 1.8 33 65-108 64-96 (113)
473 cd08277 liver_alcohol_DH_like 77.0 35 0.00076 32.3 11.4 99 173-286 180-287 (365)
474 PRK00423 tfb transcription ini 76.9 1.6 3.4E-05 40.7 2.0 32 70-109 10-41 (310)
475 PRK08265 short chain dehydroge 76.8 30 0.00065 30.9 10.4 72 178-258 6-90 (261)
476 KOG2918 Carboxymethyl transfer 76.6 50 0.0011 30.7 11.3 159 177-342 87-279 (335)
477 COG1779 C4-type Zn-finger prot 76.3 1.2 2.7E-05 37.9 1.0 45 66-110 9-55 (201)
478 cd08231 MDR_TM0436_like Hypoth 76.2 56 0.0012 30.7 12.6 94 176-285 176-280 (361)
479 PRK05854 short chain dehydroge 76.0 56 0.0012 30.2 12.3 78 177-258 13-103 (313)
480 PLN02514 cinnamyl-alcohol dehy 76.0 31 0.00066 32.6 10.7 96 176-285 179-275 (357)
481 PRK09072 short chain dehydroge 75.8 41 0.0009 29.9 11.1 76 178-260 5-92 (263)
482 PRK07814 short chain dehydroge 75.7 48 0.001 29.5 11.5 75 177-257 9-96 (263)
483 PRK07502 cyclohexadienyl dehyd 75.6 15 0.00032 34.1 8.2 90 179-283 7-98 (307)
484 TIGR01562 FdhE formate dehydro 75.5 1.9 4E-05 40.0 2.0 39 71-110 184-222 (305)
485 PF09723 Zn-ribbon_8: Zinc rib 74.8 2 4.2E-05 27.0 1.4 31 70-106 4-34 (42)
486 PHA02998 RNA polymerase subuni 74.8 1.9 4.1E-05 36.1 1.7 41 70-110 142-183 (195)
487 PLN02178 cinnamyl-alcohol dehy 74.7 16 0.00034 35.0 8.4 94 176-285 177-273 (375)
488 PRK14811 formamidopyrimidine-D 74.5 1.8 3.9E-05 39.5 1.7 31 73-110 237-267 (269)
489 cd08261 Zn_ADH7 Alcohol dehydr 74.5 46 0.00099 30.9 11.4 97 173-285 155-258 (337)
490 cd08263 Zn_ADH10 Alcohol dehyd 74.4 53 0.0011 31.0 11.9 95 175-285 185-287 (367)
491 COG1255 Uncharacterized protei 74.3 9 0.0002 29.9 5.1 89 178-288 14-105 (129)
492 cd08236 sugar_DH NAD(P)-depend 74.3 58 0.0013 30.2 12.0 98 172-285 154-258 (343)
493 cd08301 alcohol_DH_plants Plan 74.3 48 0.001 31.4 11.6 99 173-286 183-290 (369)
494 cd08255 2-desacetyl-2-hydroxye 74.0 42 0.00092 30.0 10.7 96 173-285 93-190 (277)
495 PRK05978 hypothetical protein; 73.9 2.3 5E-05 34.9 2.0 39 65-111 27-65 (148)
496 COG4121 Uncharacterized conser 73.7 26 0.00055 31.6 8.7 132 177-343 58-232 (252)
497 cd08295 double_bond_reductase_ 73.6 42 0.0009 31.3 10.8 99 171-285 145-251 (338)
498 TIGR00100 hypA hydrogenase nic 73.5 2.1 4.5E-05 33.6 1.6 33 65-108 64-96 (115)
499 PF04423 Rad50_zn_hook: Rad50 73.5 1.2 2.7E-05 29.6 0.3 12 73-84 22-33 (54)
500 KOG1098 Putative SAM-dependent 73.5 7.1 0.00015 39.4 5.5 98 175-287 42-160 (780)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.95 E-value=6e-27 Score=205.83 Aligned_cols=208 Identities=24% Similarity=0.297 Sum_probs=159.6
Q ss_pred ecCCCCCCcCCCCccchhcccCchhhHHHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHH
Q 018003 118 TAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK 197 (362)
Q Consensus 118 ~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~ 197 (362)
.+...+..|+.. |+++|+..++.|++... ..+...+|.+|||+|||||.++..+++
T Consensus 16 vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~i---------------~~~~~~~g~~vLDva~GTGd~a~~~~k 71 (238)
T COG2226 16 VFDKVAKKYDLM---------NDLMSFGLHRLWRRALI---------------SLLGIKPGDKVLDVACGTGDMALLLAK 71 (238)
T ss_pred HHHhhHHHHHhh---------cccccCcchHHHHHHHH---------------HhhCCCCCCEEEEecCCccHHHHHHHH
Confidence 455566677765 78899999999998763 233334799999999999999999999
Q ss_pred hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccC
Q 018003 198 SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277 (362)
Q Consensus 198 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp 277 (362)
....++|+|+|+|+.|++.|+++.... ...+++++++|++.+||++++||+|++.++|++++|+.++|+|+.|+|||
T Consensus 72 ~~g~g~v~~~D~s~~ML~~a~~k~~~~---~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKp 148 (238)
T COG2226 72 SVGTGEVVGLDISESMLEVAREKLKKK---GVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKP 148 (238)
T ss_pred hcCCceEEEEECCHHHHHHHHHHhhcc---CccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcC
Confidence 866789999999999999999998775 12349999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEccCCCCcchhhhHHH-----HHhh-------hhccccc-ccccccCCHHHHHHHHHHCCCEEE--EEEEec
Q 018003 278 GGVFVGTTYIVDGPFNLIPFSRLL-----RQVC-------FLDLKIV-GFSIPVLGFDDLKRIFRQFQLVVN--LKLFYG 342 (362)
Q Consensus 278 gG~li~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~-~~~~~~~s~~~l~~ll~~~Gf~~v--~~~~~g 342 (362)
||++++.+...............+ .... ...+.+. .....+.+.+++...++++||+.+ +..++|
T Consensus 149 gG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G 228 (238)
T COG2226 149 GGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFG 228 (238)
T ss_pred CeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeee
Confidence 999999887764322221111111 0110 0011111 114566789999999999999755 466678
Q ss_pred eeEEEEeeCc
Q 018003 343 HIQHYIVKIP 352 (362)
Q Consensus 343 ~~~~~~~~kp 352 (362)
....+.+.|+
T Consensus 229 ~~~l~~g~K~ 238 (238)
T COG2226 229 IVALHRGYKP 238 (238)
T ss_pred eEEEEEEecC
Confidence 8888877764
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.95 E-value=2.6e-27 Score=210.31 Aligned_cols=210 Identities=22% Similarity=0.311 Sum_probs=92.5
Q ss_pred eeeecCCCCCCcCCCCccchhcccCchhhHHHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHH
Q 018003 115 FDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194 (362)
Q Consensus 115 ~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~ 194 (362)
+.-+++..+..|+.. |..+++..++.||+.. .+.+...++.+|||+|||||.++..
T Consensus 9 v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~---------------~~~~~~~~g~~vLDv~~GtG~~~~~ 64 (233)
T PF01209_consen 9 VRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKL---------------IKLLGLRPGDRVLDVACGTGDVTRE 64 (233)
T ss_dssp -------------------------------------SHH---------------HHHHT--S--EEEEET-TTSHHHHH
T ss_pred HHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHH---------------HhccCCCCCCEEEEeCCChHHHHHH
Confidence 444566777788765 6788899999998854 3344566788999999999999999
Q ss_pred HHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHh
Q 018003 195 FAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISR 273 (362)
Q Consensus 195 l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r 273 (362)
+++. ++.++|+|+|+|+.|++.|++++... ...+++++++|++++|+++++||+|++.+.+++++|+.++|+|+.|
T Consensus 65 l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~---~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~R 141 (233)
T PF01209_consen 65 LARRVGPNGKVVGVDISPGMLEVARKKLKRE---GLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYR 141 (233)
T ss_dssp HGGGSS---EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHH
T ss_pred HHHHCCCccEEEEecCCHHHHHHHHHHHHhh---CCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHH
Confidence 8876 55679999999999999999998875 2359999999999999999999999999999999999999999999
Q ss_pred hccCCcEEEEEEEccCCCCcc-----------hhhhHHHHHhhhhcccccc-cccccCCHHHHHHHHHHCCCEEEE--EE
Q 018003 274 VLRPGGVFVGTTYIVDGPFNL-----------IPFSRLLRQVCFLDLKIVG-FSIPVLGFDDLKRIFRQFQLVVNL--KL 339 (362)
Q Consensus 274 ~LkpgG~li~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~l~~ll~~~Gf~~v~--~~ 339 (362)
+|||||++++.+......... .|++..+.......|.+.. ....+.+.+++.++++++||+.++ ..
T Consensus 142 VLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~ 221 (233)
T PF01209_consen 142 VLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPL 221 (233)
T ss_dssp HEEEEEEEEEEEEEB-SSHHHHHHHHH-----------------------------------------------------
T ss_pred HcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999988876432111 1111211111111222221 145667899999999999998654 56
Q ss_pred EeceeEEEEeeC
Q 018003 340 FYGHIQHYIVKI 351 (362)
Q Consensus 340 ~~g~~~~~~~~k 351 (362)
.+|....+++.|
T Consensus 222 ~~G~~~i~~g~K 233 (233)
T PF01209_consen 222 TFGIVTIHVGTK 233 (233)
T ss_dssp ------------
T ss_pred ccccccccccCC
Confidence 677777776654
No 3
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.92 E-value=5.9e-24 Score=192.93 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=131.1
Q ss_pred hhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 018003 171 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249 (362)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~f 249 (362)
+.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++..........++.++++|++.+|+++++|
T Consensus 67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sf 146 (261)
T PLN02233 67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYF 146 (261)
T ss_pred HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCE
Confidence 3445566889999999999999988876 455699999999999999988754210112458999999999999999999
Q ss_pred eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHh----hh------hcccc-ccccccc
Q 018003 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQV----CF------LDLKI-VGFSIPV 318 (362)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~-~~~~~~~ 318 (362)
|+|++..+++|++|+..+++++.|+|||||.+++.++.........+....+... .. ..+.+ ......+
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988764321111111000000 00 00000 0112457
Q ss_pred CCHHHHHHHHHHCCCEEEEEEEe--ceeEEEEee
Q 018003 319 LGFDDLKRIFRQFQLVVNLKLFY--GHIQHYIVK 350 (362)
Q Consensus 319 ~s~~~l~~ll~~~Gf~~v~~~~~--g~~~~~~~~ 350 (362)
++.+++.++++++||+.++.... |....++++
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 89999999999999988765443 445555543
No 4
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.92 E-value=2.5e-24 Score=196.95 Aligned_cols=179 Identities=23% Similarity=0.348 Sum_probs=130.2
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCCCCCCcCCCCccchhcccCchhhHHHhhhh
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 150 (362)
+++||+|+++|.... ..++|+++|+++..++||+++++........... ..+++. -
T Consensus 2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d--~~~~~~-----------a 57 (272)
T PRK11088 2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGD--NKEMMQ-----------A 57 (272)
T ss_pred cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCCc--CHHHHH-----------H
Confidence 489999999996543 6799999988889999999999753332221110 001111 1
Q ss_pred hhhhccCCCCCcHH--HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHhhcC
Q 018003 151 RQNFVWGGFPGPEK--EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQES 225 (362)
Q Consensus 151 ~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~ 225 (362)
|+.|.+.+++.+.. ..+.+.+.+. ....+|||+|||+|.++..+++..+. ..++|+|+|+.+++.|+++
T Consensus 58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----- 131 (272)
T PRK11088 58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----- 131 (272)
T ss_pred HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence 34454555544322 2233444443 34578999999999999998876432 3799999999999999875
Q ss_pred CCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 226 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 226 ~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
.+++.+.++|+..+|+++++||+|++... | ..++++.|+|||||++++.++...
T Consensus 132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------~-~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYA------P-CKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred ---CCCCeEEEeecccCCCcCCceeEEEEecC------C-CCHHHHHhhccCCCEEEEEeCCCc
Confidence 46788999999999999999999998654 1 246899999999999999987653
No 5
>PLN02244 tocopherol O-methyltransferase
Probab=99.90 E-value=5e-22 Score=186.99 Aligned_cols=170 Identities=18% Similarity=0.112 Sum_probs=130.2
Q ss_pred HHHHHhhcCC-----CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003 166 FELMKGYLKP-----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (362)
Q Consensus 166 ~~~l~~~l~~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 240 (362)
++.+.+.+.. .++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++.+.. +...++.++++|+.
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~--g~~~~v~~~~~D~~ 178 (340)
T PLN02244 102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ--GLSDKVSFQVADAL 178 (340)
T ss_pred HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEEcCcc
Confidence 4445555554 567899999999999999999874 459999999999999999987665 22457999999999
Q ss_pred CCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCc----chhhhHHHHHhhhhccccccccc
Q 018003 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN----LIPFSRLLRQVCFLDLKIVGFSI 316 (362)
Q Consensus 241 ~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
.+|+++++||+|++..+++|++|+..+++++.|+|||||++++.++....... ..+............+. ..
T Consensus 179 ~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~----~p 254 (340)
T PLN02244 179 NQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY----LP 254 (340)
T ss_pred cCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc----CC
Confidence 99999999999999999999999999999999999999999999876432211 11111111111110000 22
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003 317 PVLGFDDLKRIFRQFQLVVNLKLFYG 342 (362)
Q Consensus 317 ~~~s~~~l~~ll~~~Gf~~v~~~~~g 342 (362)
.+.+.+++.++++++||++++...+.
T Consensus 255 ~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 255 AWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred CCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 45689999999999999988776543
No 6
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.89 E-value=2e-22 Score=173.73 Aligned_cols=207 Identities=20% Similarity=0.185 Sum_probs=155.0
Q ss_pred ecCCCCCCcCCCCccchhcccCchhhHHHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHH
Q 018003 118 TAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK 197 (362)
Q Consensus 118 ~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~ 197 (362)
+++..+..|+-+ |+.++...+|.|...+ ...+.+.++.++||++||||..+..+.+
T Consensus 65 vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~---------------v~~L~p~~~m~~lDvaGGTGDiaFril~ 120 (296)
T KOG1540|consen 65 VFESVAKKYDIM---------NDAMSLGIHRLWKDMF---------------VSKLGPGKGMKVLDVAGGTGDIAFRILR 120 (296)
T ss_pred HHHHHHHHHHHH---------HHHhhcchhHHHHHHh---------------hhccCCCCCCeEEEecCCcchhHHHHHH
Confidence 355555667655 7778888888896655 4467788889999999999999988887
Q ss_pred hCCC------CEEEEEeCCHHHHHHHHHHHhhcCCCC-CCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHH
Q 018003 198 SGLF------SLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 270 (362)
Q Consensus 198 ~~~~------~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~ 270 (362)
.-.. .+|+++|++++|+..++++..+. +.. ...+.|+++|++++||++.+||+.++.+.|..++|++++|+|
T Consensus 121 ~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~E 199 (296)
T KOG1540|consen 121 HVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALRE 199 (296)
T ss_pred hhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHH
Confidence 6433 68999999999999999987553 222 234999999999999999999999999999999999999999
Q ss_pred HHhhccCCcEEEEEEEccCCCCcch-----------hhhHHHHHhhhhcccccc-cccccCCHHHHHHHHHHCCCEEEE-
Q 018003 271 ISRVLRPGGVFVGTTYIVDGPFNLI-----------PFSRLLRQVCFLDLKIVG-FSIPVLGFDDLKRIFRQFQLVVNL- 337 (362)
Q Consensus 271 i~r~LkpgG~li~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~s~~~l~~ll~~~Gf~~v~- 337 (362)
++|+|||||+|.+.++......... |.+..+....+..+++.. ....+.+.+++..+.+++||..+.
T Consensus 200 AYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~ 279 (296)
T KOG1540|consen 200 AYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNG 279 (296)
T ss_pred HHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccccc
Confidence 9999999999999887654321111 112222222222222221 146678999999999999997654
Q ss_pred --EEEeceeEEEEe
Q 018003 338 --KLFYGHIQHYIV 349 (362)
Q Consensus 338 --~~~~g~~~~~~~ 349 (362)
..++|....+.+
T Consensus 280 ye~lt~Gv~aIH~g 293 (296)
T KOG1540|consen 280 YENLTFGVVAIHSG 293 (296)
T ss_pred cccceeeeeeeehh
Confidence 555665555443
No 7
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.88 E-value=1.2e-21 Score=181.51 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=120.4
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
.++.+|||||||+|.++..+++.+. +|+|+|+++++++.|+++.+.. ....++.++++|++++++.+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhhccCCCCEEEEh
Confidence 3577999999999999999988754 9999999999999999876543 11347999999999998888899999999
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHh-hhhcccccccc--cccCCHHHHHHHHHHCC
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQV-CFLDLKIVGFS--IPVLGFDDLKRIFRQFQ 332 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~s~~~l~~ll~~~G 332 (362)
++|||+.|+..+++++.++|||||.+++.+++.... .+...+... ....+...+.| ..+++++++.++|+++|
T Consensus 206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aG 281 (322)
T PLN02396 206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRAS 281 (322)
T ss_pred hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcC
Confidence 999999999999999999999999999999875321 111111000 00000111112 35789999999999999
Q ss_pred CEEEEE
Q 018003 333 LVVNLK 338 (362)
Q Consensus 333 f~~v~~ 338 (362)
|++++.
T Consensus 282 f~i~~~ 287 (322)
T PLN02396 282 VDVKEM 287 (322)
T ss_pred CeEEEE
Confidence 988765
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.87 E-value=2.1e-20 Score=167.08 Aligned_cols=182 Identities=21% Similarity=0.218 Sum_probs=135.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
+.++..+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.+++++... ...++.++++|+..++++
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA---GLHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc---CCCceEEEEechhcCCCC
Confidence 44566677777899999999999999999876 45679999999999999999987654 246899999999998888
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchh-----------hhHHHHHhhhhcc-cccc
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP-----------FSRLLRQVCFLDL-KIVG 313 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~ 313 (362)
+++||+|++..+++|++++..+++++.++|+|||++++.++.......+.. .+..........+ ...+
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE 191 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence 889999999999999999999999999999999999988765432211111 1110000000000 0011
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEEE--eceeEEEEeeC
Q 018003 314 FSIPVLGFDDLKRIFRQFQLVVNLKLF--YGHIQHYIVKI 351 (362)
Q Consensus 314 ~~~~~~s~~~l~~ll~~~Gf~~v~~~~--~g~~~~~~~~k 351 (362)
....+++.++++++|+++||++++... +|....++++|
T Consensus 192 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 192 STRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 145678999999999999998765544 45666666654
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.86 E-value=3.4e-20 Score=168.48 Aligned_cols=163 Identities=13% Similarity=0.131 Sum_probs=129.5
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
......++..+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++... ..++.+.++|+...
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKK 111 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccC
Confidence 4446677777888889999999999999998887753 45999999999999999987543 25799999999988
Q ss_pred CCCCCcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCC
Q 018003 243 PFASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG 320 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 320 (362)
|+++++||+|++..+++|++ ++..+++++.++|||||.+++.++....... +......... .. ...+.+
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~---~~~~~~~~~~-----~~-~~~~~~ 182 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN---WDEEFKAYIK-----KR-KYTLIP 182 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC---cHHHHHHHHH-----hc-CCCCCC
Confidence 98889999999999999986 7889999999999999999999886543211 1111211111 01 345679
Q ss_pred HHHHHHHHHHCCCEEEEEEE
Q 018003 321 FDDLKRIFRQFQLVVNLKLF 340 (362)
Q Consensus 321 ~~~l~~ll~~~Gf~~v~~~~ 340 (362)
..++.++|+++||+++....
T Consensus 183 ~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 183 IQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred HHHHHHHHHHCCCCeeeEEe
Confidence 99999999999998887654
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.86 E-value=1.5e-21 Score=168.64 Aligned_cols=153 Identities=19% Similarity=0.255 Sum_probs=121.2
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
-++.+|||||||-|.++..+++.|. +|+|+|+++.+++.|+.+.... .-.+.+.+..++++....++||+|+|.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~----gv~i~y~~~~~edl~~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALES----GVNIDYRQATVEDLASAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhc----cccccchhhhHHHHHhcCCCccEEEEh
Confidence 4688999999999999999999996 9999999999999999987776 455778888888877666899999999
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh-hcccccc--cccccCCHHHHHHHHHHCC
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF-LDLKIVG--FSIPVLGFDDLKRIFRQFQ 332 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~s~~~l~~ll~~~G 332 (362)
.||||++||..+++++.+++||||.++++|++.. ..+++..+...-+ ..+-..+ ....+..++++...+...|
T Consensus 132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt----~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT----LKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC----HHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 9999999999999999999999999999999964 2232222111100 0011111 1356788999999999999
Q ss_pred CEEEEE
Q 018003 333 LVVNLK 338 (362)
Q Consensus 333 f~~v~~ 338 (362)
+.....
T Consensus 208 ~~~~~~ 213 (243)
T COG2227 208 LKIIDR 213 (243)
T ss_pred ceEEee
Confidence 977654
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.85 E-value=8.5e-21 Score=159.63 Aligned_cols=142 Identities=26% Similarity=0.430 Sum_probs=110.1
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (362)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~ 254 (362)
..++.+|||+|||+|.++..+++.+. +++|+|+++.+++. . +......+....+.++++||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPDGSFDLIIC 84 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccccchhhHhh
Confidence 45688999999999999999988877 99999999999887 1 233444444455556789999999
Q ss_pred cccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCE
Q 018003 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV 334 (362)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~ 334 (362)
+.+|+|++|+..+|+++.++|||||++++.++.... ........ +........ |..+++.++++.+++++||+
T Consensus 85 ~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 85 NDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD-----PSPRSFLK-WRYDRPYGG-HVHFFSPDELRQLLEQAGFE 157 (161)
T ss_dssp ESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS-----HHHHHHHH-CCGTCHHTT-TTEEBBHHHHHHHHHHTTEE
T ss_pred HHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc-----hhhhHHHh-cCCcCccCc-eeccCCHHHHHHHHHHCCCE
Confidence 999999999999999999999999999999998632 11111111 111111113 78899999999999999999
Q ss_pred EEEE
Q 018003 335 VNLK 338 (362)
Q Consensus 335 ~v~~ 338 (362)
+++.
T Consensus 158 iv~~ 161 (161)
T PF13489_consen 158 IVEE 161 (161)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 8863
No 12
>PRK05785 hypothetical protein; Provisional
Probab=99.85 E-value=8.6e-21 Score=168.46 Aligned_cols=162 Identities=25% Similarity=0.204 Sum_probs=118.5
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v 257 (362)
+.+|||+|||+|.++..+++.. ..+|+|+|+|++|++.|+++ ..++++|++.+|+++++||+|++..+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecCh
Confidence 6799999999999999998884 35999999999999999873 23578999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCC----------cchhhhHHHHHhhhhccccc-ccccccCCHHHHHH
Q 018003 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF----------NLIPFSRLLRQVCFLDLKIV-GFSIPVLGFDDLKR 326 (362)
Q Consensus 258 l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~l~~ 326 (362)
++|++|+..+++++.|+|||.+ .++....++... ...|++..+.......|.+. .....+.+.+++.+
T Consensus 120 l~~~~d~~~~l~e~~RvLkp~~-~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~ 198 (226)
T PRK05785 120 LHASDNIEKVIAEFTRVSRKQV-GFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE 198 (226)
T ss_pred hhccCCHHHHHHHHHHHhcCce-EEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999942 233322222110 01111111111111112111 12456678999999
Q ss_pred HHHH-CCCEEEEEEEeceeEEEEeeCc
Q 018003 327 IFRQ-FQLVVNLKLFYGHIQHYIVKIP 352 (362)
Q Consensus 327 ll~~-~Gf~~v~~~~~g~~~~~~~~kp 352 (362)
++++ .++...+..++|....++++|.
T Consensus 199 ~~~~~~~~~~~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 199 IFEKYADIKVYEERGLGLVYFVVGSSR 225 (226)
T ss_pred HHHHHhCceEEEEccccEEEEEEEeeC
Confidence 9999 5566777888899988888763
No 13
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.85 E-value=5.7e-20 Score=169.57 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=123.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
..+...+...++++|||||||+|.++..++..++ ..|+|+|+|+.|+.+++...... ....++.+..++++++|..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~lp~~- 186 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQLHEL- 186 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHHCCCC-
Confidence 5667777777789999999999999998888875 47999999999988754321111 0135788888999888754
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR 326 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 326 (362)
.+||+|+++++++|+++|..+|++++++|||||.|++.+...++..... .... .... .... .....+..++..
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~-l~p~--~ry~---k~~n-v~flpS~~~L~~ 259 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTV-LVPK--DRYA---KMKN-VYFIPSVSALKN 259 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccc-cCch--HHHH---hccc-cccCCCHHHHHH
Confidence 4799999999999999999999999999999999999987654422111 0000 0000 0011 234568999999
Q ss_pred HHHHCCCEEEEEEEece
Q 018003 327 IFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 327 ll~~~Gf~~v~~~~~g~ 343 (362)
+|+++||+.++......
T Consensus 260 ~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 260 WLEKVGFENFRILDVLK 276 (314)
T ss_pred HHHHCCCeEEEEEeccC
Confidence 99999999988765433
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.85 E-value=5.2e-20 Score=171.58 Aligned_cols=166 Identities=21% Similarity=0.237 Sum_probs=124.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
..+...+.+.++.+|||||||+|.++..++..++ ..|+|+|+|+.++.+++...... ....++.++.+|++.+|+ +
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~--~~~~~i~~~~~d~e~lp~-~ 187 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL--GNDQRAHLLPLGIEQLPA-L 187 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc--CCCCCeEEEeCCHHHCCC-c
Confidence 5667777766789999999999999999999875 36999999999987654432211 013579999999999988 7
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR 326 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 326 (362)
++||+|++..+++|+.||..+++++++.|+|||.+++.+...++......+-. ..+. .... .....+..++..
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~---~~y~---~~~~-~~~lps~~~l~~ 260 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG---DRYA---KMRN-VYFIPSVPALKN 260 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch---hHHh---cCcc-ceeCCCHHHHHH
Confidence 88999999999999999999999999999999999998876543211110000 0000 1111 223458999999
Q ss_pred HHHHCCCEEEEEEEece
Q 018003 327 IFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 327 ll~~~Gf~~v~~~~~g~ 343 (362)
+|+++||+.++......
T Consensus 261 ~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 261 WLERAGFKDVRIVDVSV 277 (322)
T ss_pred HHHHcCCceEEEEeCCC
Confidence 99999999887765443
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.85 E-value=4.1e-20 Score=167.64 Aligned_cols=178 Identities=15% Similarity=0.155 Sum_probs=129.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA 245 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~ 245 (362)
+.+++.+. .++.+|||+|||+|.++..+++.+. +|+|+|+|++|++.|+++.... +...++.++++|+.+++ +.
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~--g~~~~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAK--GVSDNMQFIHCAAQDIAQHL 109 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc--CCccceEEEEcCHHHHhhhc
Confidence 34455554 3467999999999999999999875 9999999999999999988765 22357899999997764 56
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhh----HHHHHhhhhcccccccccccCCH
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS----RLLRQVCFLDLKIVGFSIPVLGF 321 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~ 321 (362)
+++||+|++..+++|+.+|..+++++.++|||||++++..++.+... ....+ ....................+++
T Consensus 110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 188 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLL-MHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDP 188 (255)
T ss_pred CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHH-HHHHHccChHHHHhcCccccccCCCCCCCCCH
Confidence 78999999999999999999999999999999999999888754210 00000 00001000000000002345889
Q ss_pred HHHHHHHHHCCCEEEEEEEeceeEEEEee
Q 018003 322 DDLKRIFRQFQLVVNLKLFYGHIQHYIVK 350 (362)
Q Consensus 322 ~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~ 350 (362)
+++.++++++||+++...-.+.+..|+..
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi~~~~~~~~~ 217 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGVRVFHDYLRN 217 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeEEEEeeccCc
Confidence 99999999999999876655555555543
No 16
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.84 E-value=1e-19 Score=165.07 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=118.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
..+++.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++ .++.++++|++.++ ++
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PK 87 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CC
Confidence 45566677777899999999999999999998776799999999999999976 25789999998775 56
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHH--Hhhhhccccc--ccccccCCHH
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR--QVCFLDLKIV--GFSIPVLGFD 322 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~s~~ 322 (362)
++||+|+++.++||++|+..+++++.++|||||.+++..+..... ........+. ..+....... .....+.+.+
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDA-PSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCC-hhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 789999999999999999999999999999999999986542111 1111112111 1111000000 1023457899
Q ss_pred HHHHHHHHCCCEEE
Q 018003 323 DLKRIFRQFQLVVN 336 (362)
Q Consensus 323 ~l~~ll~~~Gf~~v 336 (362)
.+.++|+++||++.
T Consensus 167 ~~~~~l~~aGf~v~ 180 (255)
T PRK14103 167 GYAELLTDAGCKVD 180 (255)
T ss_pred HHHHHHHhCCCeEE
Confidence 99999999999753
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.83 E-value=4.9e-19 Score=174.69 Aligned_cols=161 Identities=16% Similarity=0.121 Sum_probs=128.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~ 244 (362)
..+.+.+.+...++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.|+++.... ..++.+.++|+...++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence 34556666666678899999999999998888764 469999999999999999876543 4579999999999888
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL 324 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 324 (362)
++++||+|++..+++|++|+..++++++++|||||.+++.++..........+ ... .. .. ...+.+.+++
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-~~~---~~----~~--g~~~~~~~~~ 398 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF-AEY---IK----QR--GYDLHDVQAY 398 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH-HHH---HH----hc--CCCCCCHHHH
Confidence 88899999999999999999999999999999999999998876432121111 111 11 11 2356789999
Q ss_pred HHHHHHCCCEEEEEEE
Q 018003 325 KRIFRQFQLVVNLKLF 340 (362)
Q Consensus 325 ~~ll~~~Gf~~v~~~~ 340 (362)
.++++++||+++....
T Consensus 399 ~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 399 GQMLKDAGFDDVIAED 414 (475)
T ss_pred HHHHHHCCCeeeeeec
Confidence 9999999999886554
No 18
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.83 E-value=2.6e-19 Score=162.13 Aligned_cols=152 Identities=26% Similarity=0.321 Sum_probs=120.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
.+.+.+.+...++.+|||+|||+|.++..+.+.+. +++|+|+|+.|++.++++. ....++++|++.+|++
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCC
Confidence 35566666665678999999999999999888764 9999999999999998862 2356889999999998
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK 325 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 325 (362)
+++||+|+++.++++.+|+..+++++.++|||||.++++++..... +.+........ ..+....+++.+++.
T Consensus 101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~----~el~~~~~~~~----~~~~~~~~~~~~~l~ 172 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL----PELHQAWQAVD----ERPHANRFLPPDAIE 172 (251)
T ss_pred CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch----HHHHHHHHHhc----cCCccccCCCHHHHH
Confidence 8999999999999999999999999999999999999998876432 11222111111 112246788999999
Q ss_pred HHHHHCCCEE
Q 018003 326 RIFRQFQLVV 335 (362)
Q Consensus 326 ~ll~~~Gf~~ 335 (362)
.++...|++.
T Consensus 173 ~~l~~~~~~~ 182 (251)
T PRK10258 173 QALNGWRYQH 182 (251)
T ss_pred HHHHhCCcee
Confidence 9999988854
No 19
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.82 E-value=3.1e-18 Score=153.60 Aligned_cols=184 Identities=21% Similarity=0.208 Sum_probs=135.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
..+...+...++.+|||+|||+|.++..++..++ ..+++|+|+++.+++.+++++... ....++.++.+|+...++.
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL--GLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc--ccccCeEEEecccccCCCC
Confidence 3445555555678999999999999999988875 579999999999999999987653 1235789999999888877
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHH--------hhhhcc----cccc
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--------VCFLDL----KIVG 313 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~ 313 (362)
.++||+|++..+++|+.++..+++++.++|+|||.+++.+.................. .+.... ....
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAE 198 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHH
Confidence 7899999999999999999999999999999999999887755322111110000000 000000 0001
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEEEe--ceeEEEEeeCc
Q 018003 314 FSIPVLGFDDLKRIFRQFQLVVNLKLFY--GHIQHYIVKIP 352 (362)
Q Consensus 314 ~~~~~~s~~~l~~ll~~~Gf~~v~~~~~--g~~~~~~~~kp 352 (362)
....+++.+++.++|+++||+.++.... |.+..+++.||
T Consensus 199 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 199 SIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 0135678999999999999988766654 66788888776
No 20
>PRK08317 hypothetical protein; Provisional
Probab=99.82 E-value=1.5e-18 Score=155.58 Aligned_cols=167 Identities=28% Similarity=0.253 Sum_probs=129.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++.... ..++.+..+|+...+++
T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCC
Confidence 456667777778999999999999999998875 5679999999999999999874333 56899999999988888
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCC---cchhhhHHHHHhhhhcccccccccccCCHH
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF---NLIPFSRLLRQVCFLDLKIVGFSIPVLGFD 322 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 322 (362)
+++||+|++..+++|++++..+++++.++|||||.+++.++...... ............+.. . ....++..
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~ 158 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD-----H-FADPWLGR 158 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh-----c-CCCCcHHH
Confidence 89999999999999999999999999999999999999887543211 111223333222220 1 23345667
Q ss_pred HHHHHHHHCCCEEEEEEEece
Q 018003 323 DLKRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 323 ~l~~ll~~~Gf~~v~~~~~g~ 343 (362)
.+.++|+++||+.+.......
T Consensus 159 ~~~~~l~~aGf~~~~~~~~~~ 179 (241)
T PRK08317 159 RLPGLFREAGLTDIEVEPYTL 179 (241)
T ss_pred HHHHHHHHcCCCceeEEEEEE
Confidence 899999999998876655443
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.81 E-value=1.2e-19 Score=138.53 Aligned_cols=95 Identities=35% Similarity=0.579 Sum_probs=84.3
Q ss_pred EEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCC
Q 018003 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261 (362)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~ 261 (362)
||+|||+|.++..+++. +..+++|+|+++++++.++++... .++.+..+|++.+|+++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence 89999999999999999 446999999999999999998654 36679999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccCCcEEEE
Q 018003 262 SSPSTGVAEISRVLRPGGVFVG 283 (362)
Q Consensus 262 ~d~~~~l~~i~r~LkpgG~li~ 283 (362)
+++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999985
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.81 E-value=1.3e-18 Score=161.75 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=118.1
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
.++.+|||+|||+|.++..+++..+..+++++|+|++|++.|+++.. ..++.++.+|++.+++++++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEc
Confidence 35779999999999999888877555699999999999999998743 246889999999999988999999999
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEE
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVV 335 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~ 335 (362)
.+++|++++..+++++.++|||||.+++..+.... .+..+..... ...+.+.+++.++++++||+.
T Consensus 186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~-----~~~~r~~~~~---------~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT-----FWLSRFFADV---------WMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc-----hhHHHHhhhh---------hccCCCHHHHHHHHHHCCCeE
Confidence 99999999999999999999999999887654321 1122111111 123468999999999999998
Q ss_pred EEEEEec
Q 018003 336 NLKLFYG 342 (362)
Q Consensus 336 v~~~~~g 342 (362)
++....+
T Consensus 252 V~i~~i~ 258 (340)
T PLN02490 252 VKLKRIG 258 (340)
T ss_pred EEEEEcC
Confidence 8776543
No 23
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.81 E-value=3.8e-19 Score=159.11 Aligned_cols=172 Identities=19% Similarity=0.271 Sum_probs=127.9
Q ss_pred hhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH--HHhhcCC
Q 018003 149 GWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE--FVQQESN 226 (362)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~--~~~~~~~ 226 (362)
-||..+.| +++..++..-.|++|||||||.|+++..++.+|+ ..|+|+|++.....+.+. ++...
T Consensus 97 EWrSd~KW----------~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~-- 163 (315)
T PF08003_consen 97 EWRSDWKW----------DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQ-- 163 (315)
T ss_pred cccccchH----------HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCC--
Confidence 36666655 7888888777899999999999999999999986 579999999876665332 22211
Q ss_pred CCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh
Q 018003 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF 306 (362)
Q Consensus 227 ~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
...+......++++|. .+.||+|++.+||+|..+|...|++++..|+|||.+++.|...++.....-.-.. ...
T Consensus 164 --~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~---rYa 237 (315)
T PF08003_consen 164 --DPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPED---RYA 237 (315)
T ss_pred --CccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCC---ccc
Confidence 2334444456788886 7889999999999999999999999999999999999999987664322110000 000
Q ss_pred hcccccccccccCCHHHHHHHHHHCCCEEEEEEEece
Q 018003 307 LDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 307 ~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~ 343 (362)
.... .+...|...+..+|+++||+.++......
T Consensus 238 ---~m~n-v~FiPs~~~L~~wl~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 238 ---KMRN-VWFIPSVAALKNWLERAGFKDVRCVDVSP 270 (315)
T ss_pred ---CCCc-eEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence 1111 34446999999999999999988765543
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.81 E-value=1.9e-18 Score=155.80 Aligned_cols=160 Identities=13% Similarity=0.134 Sum_probs=117.4
Q ss_pred CCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003 177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~ 254 (362)
++.+|||+|||+|..+..+++. .++.+++|+|+|+.|++.|++++... ....++.++++|+..+|++ .+|+|++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~--~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY--KAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 5789999999999999888773 46679999999999999999998764 1234799999999988764 4999999
Q ss_pred cccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh--hcc---------cccccccccCCH
Q 018003 255 GAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF--LDL---------KIVGFSIPVLGF 321 (362)
Q Consensus 255 ~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~s~ 321 (362)
+.++||+++. ..+++++.++|||||.|++.+..........+.+........ ..+ ..........+.
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 9999999743 579999999999999999988654332222332222111111 000 001112344789
Q ss_pred HHHHHHHHHCCCEEEEEEE
Q 018003 322 DDLKRIFRQFQLVVNLKLF 340 (362)
Q Consensus 322 ~~l~~ll~~~Gf~~v~~~~ 340 (362)
++..++|+++||..+...+
T Consensus 212 ~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 212 ETHKARLHKAGFEHSELWF 230 (247)
T ss_pred HHHHHHHHHcCchhHHHHH
Confidence 9999999999998765543
No 25
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.80 E-value=6.8e-19 Score=147.31 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=134.0
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEE-EEEecCCCCC-CC
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP-FA 245 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~d~~~~p-~~ 245 (362)
.+..++.......+||+|||||.+...+... +..+|+++|+++.|-+++.+.+++. ...++. +++++.+++| ++
T Consensus 67 ~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l~ 142 (252)
T KOG4300|consen 67 GIYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQLA 142 (252)
T ss_pred hhHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcccc
Confidence 3444555555567899999999998776543 5679999999999999999988776 256676 9999999998 88
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK 325 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 325 (362)
++++|+|++..+|....||.+.|+++.|+|+|||++++.+.....+..+..+++...+..+ +... ....++.+.+
T Consensus 143 d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~---~~~~-dGC~ltrd~~- 217 (252)
T KOG4300|consen 143 DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLW---HLES-DGCVLTRDTG- 217 (252)
T ss_pred cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhh---heec-cceEEehhHH-
Confidence 9999999999999999999999999999999999999999887655444444444433332 2222 3445666666
Q ss_pred HHHHHCCCEEEEEEEeceeEEEEeeCc
Q 018003 326 RIFRQFQLVVNLKLFYGHIQHYIVKIP 352 (362)
Q Consensus 326 ~ll~~~Gf~~v~~~~~g~~~~~~~~kp 352 (362)
+.|+++.|+..+.........|....|
T Consensus 218 e~Leda~f~~~~~kr~~~~ttw~~V~~ 244 (252)
T KOG4300|consen 218 ELLEDAEFSIDSCKRFNFGTTWVIVEP 244 (252)
T ss_pred HHhhhcccccchhhcccCCceEEEEec
Confidence 577889998877766666554443333
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.80 E-value=1.3e-18 Score=158.01 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=115.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
++.+.+.+..++|.+|||||||.|.++..++++. +++|+|+++|+++.+.+++++++. +...++.+...|..+++.
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~--gl~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA--GLEDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS--TSSSTEEEEES-GGG----
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEEeeccccCC-
Confidence 5667778888899999999999999999999994 469999999999999999999876 345689999999987753
Q ss_pred CCcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcc------hhhhHHHHHhhhhcccccccccc
Q 018003 246 SSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL------IPFSRLLRQVCFLDLKIVGFSIP 317 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
+||.|++..++||+. +...+++++.++|||||++++.+......... .+|+.+ +..++ ..
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~k--------yiFPg--g~ 194 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRK--------YIFPG--GY 194 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHH--------HTSTT--S-
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEE--------eeCCC--CC
Confidence 899999999999995 55799999999999999999887665321100 022211 12233 45
Q ss_pred cCCHHHHHHHHHHCCCEEEEEEEece
Q 018003 318 VLGFDDLKRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 318 ~~s~~~l~~ll~~~Gf~~v~~~~~g~ 343 (362)
..+..++...+++.||++......+.
T Consensus 195 lps~~~~~~~~~~~~l~v~~~~~~~~ 220 (273)
T PF02353_consen 195 LPSLSEILRAAEDAGLEVEDVENLGR 220 (273)
T ss_dssp --BHHHHHHHHHHTT-EEEEEEE-HH
T ss_pred CCCHHHHHHHHhcCCEEEEEEEEcCc
Confidence 67888999999999999888776653
No 27
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.79 E-value=7.3e-18 Score=154.41 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=121.1
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEE
Q 018003 174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V 252 (362)
...++.+|||+|||+|..+..+++. ++..+|+|+|+++.+++.|+++.... ...++.++.+|++.+++++++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~---g~~~v~~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA---GYTNVEFRLGEIEALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc---CCCCEEEEEcchhhCCCCCCceeEE
Confidence 3456889999999999987766654 55568999999999999999987664 2358899999999999888899999
Q ss_pred EecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCC
Q 018003 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQ 332 (362)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~G 332 (362)
+++.+++|++++..+++++.++|||||++++.+...... ....+......+. +.....++..++.++|+++|
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~e~~~~l~~aG 222 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE--LPEEIRNDAELYA------GCVAGALQEEEYLAMLAEAG 222 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC--CCHHHHHhHHHHh------ccccCCCCHHHHHHHHHHCC
Confidence 999999999999999999999999999999987765432 1111111111110 11234568899999999999
Q ss_pred CEEEEEEE
Q 018003 333 LVVNLKLF 340 (362)
Q Consensus 333 f~~v~~~~ 340 (362)
|..++...
T Consensus 223 f~~v~i~~ 230 (272)
T PRK11873 223 FVDITIQP 230 (272)
T ss_pred CCceEEEe
Confidence 98776543
No 28
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.79 E-value=3.5e-18 Score=153.56 Aligned_cols=157 Identities=12% Similarity=0.111 Sum_probs=118.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~ 254 (362)
++.+|||+|||+|.++..+++.. ++.+++|+|+|+.|++.|++++... ....++.++++|+..++++ .+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCCCC--CCCEEee
Confidence 57799999999999999988863 5679999999999999999988764 1234789999999988764 4899999
Q ss_pred cccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhc--c----------cccccccccCC
Q 018003 255 GAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLD--L----------KIVGFSIPVLG 320 (362)
Q Consensus 255 ~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~s 320 (362)
..+++|+++ +..+++++.++|||||.+++.++.........+.+..+...+... + .... +....+
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~s 207 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALEN-VMRTDS 207 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc-cCCCCC
Confidence 999999964 478999999999999999999876533222223332222211100 0 0111 445689
Q ss_pred HHHHHHHHHHCCCEEEEE
Q 018003 321 FDDLKRIFRQFQLVVNLK 338 (362)
Q Consensus 321 ~~~l~~ll~~~Gf~~v~~ 338 (362)
.+++..+++++||..++.
T Consensus 208 ~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 208 IETHKARLKNVGFSHVEL 225 (239)
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 999999999999986543
No 29
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.79 E-value=1.9e-18 Score=144.31 Aligned_cols=107 Identities=22% Similarity=0.435 Sum_probs=95.9
Q ss_pred CCCeEEEEcCccchHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEE
Q 018003 177 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH 253 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~ 253 (362)
.+.+|||+|||+|.++..++ +.++..+++|+|+|++|++.|+++++.. ...++.++++|+.+++ ++ +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~---~~~ni~~~~~d~~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL---GLDNIEFIQGDIEDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT---TSTTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc---cccccceEEeehhccccccC-CCeeEEE
Confidence 46799999999999999999 4566779999999999999999988765 2458999999999977 55 7899999
Q ss_pred ecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
+..+++|+.++..+++++.++||+||.+++..+.
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999999999887
No 30
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.78 E-value=4.3e-19 Score=154.31 Aligned_cols=150 Identities=22% Similarity=0.238 Sum_probs=113.3
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCC----CEEEEEecCCCCCCCCCcceEEE
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE----NFLLVRADISRLPFASSSIDAVH 253 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~d~~~~p~~~~~fD~V~ 253 (362)
|++|||+|||+|.++..|++.|. +|+|+|+++.|++.|++...... .... ++++.+.|++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhcc---cccceee
Confidence 57899999999999999999987 99999999999999999843331 1112 3667777777763 4599999
Q ss_pred ecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchh-hhHHHHHhhhhccccccc--ccccCCHHHHHHHHHH
Q 018003 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP-FSRLLRQVCFLDLKIVGF--SIPVLGFDDLKRIFRQ 330 (362)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~s~~~l~~ll~~ 330 (362)
|..++||+.||+.++..+.++|||||.+++++-+......... ++...--.+ -..|. -..|.++.++..++++
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~i----vp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRI----VPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHh----cCCCCcCHHHcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999988743211111 111111111 11121 2567899999999999
Q ss_pred CCCEEEE
Q 018003 331 FQLVVNL 337 (362)
Q Consensus 331 ~Gf~~v~ 337 (362)
+++.+..
T Consensus 240 ~~~~v~~ 246 (282)
T KOG1270|consen 240 NGAQVND 246 (282)
T ss_pred cCcchhh
Confidence 9996643
No 31
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.78 E-value=8.6e-18 Score=149.51 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=118.3
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccccc
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~ 259 (362)
+|||||||+|.++..+++..+..+++|+|+|+++++.+++++... +...++.++.+|+...|++ ++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 799999999999999998876679999999999999999988764 2346789999999776654 5899999999999
Q ss_pred CCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE
Q 018003 260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL 339 (362)
Q Consensus 260 h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~ 339 (362)
|++++..+++++.++|||||.+++.++..+..... . .... ...+.+..+|.++++++||+.++..
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~-------~~~~-~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-------E-------HEET-TSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-------c-------cccc-ccccCCHHHHHHHHHHCCCeEEEeE
Confidence 99999999999999999999999988754311000 0 0001 2346789999999999999998877
Q ss_pred Eece
Q 018003 340 FYGH 343 (362)
Q Consensus 340 ~~g~ 343 (362)
..+.
T Consensus 144 ~~~~ 147 (224)
T smart00828 144 DASL 147 (224)
T ss_pred ECcH
Confidence 6544
No 32
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.6e-17 Score=148.70 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=131.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
++.+.+.+..++|.+|||||||.|.++..++++. +.+|+|+++|+++.+.++++++.. +...++++...|...+.
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~--gl~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR--GLEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc--CCCcccEEEeccccccc--
Confidence 5678888899999999999999999999999986 579999999999999999998887 33458899988888764
Q ss_pred CCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCC--cchhhhHHHHHhhhhcccccccccccCCH
Q 018003 246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF--NLIPFSRLLRQVCFLDLKIVGFSIPVLGF 321 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 321 (362)
+.||.|++..++||+.. ...+++.+.++|+|||++++.+....... ...+|..+ .+.+ .....+.
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~---------yiFP-gG~lPs~ 204 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDK---------YIFP-GGELPSI 204 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHH---------hCCC-CCcCCCH
Confidence 44999999999999976 78999999999999999999877654321 22223222 1222 4566788
Q ss_pred HHHHHHHHHCCCEEEEEEEece
Q 018003 322 DDLKRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 322 ~~l~~ll~~~Gf~~v~~~~~g~ 343 (362)
..+.+..+++||++.+....+.
T Consensus 205 ~~i~~~~~~~~~~v~~~~~~~~ 226 (283)
T COG2230 205 SEILELASEAGFVVLDVESLRP 226 (283)
T ss_pred HHHHHHHHhcCcEEehHhhhcH
Confidence 9999999999999887765543
No 33
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.77 E-value=5.7e-17 Score=143.84 Aligned_cols=178 Identities=20% Similarity=0.240 Sum_probs=128.2
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
.+...+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++.. . ..++.++.+|+.+.++..
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCCC
Confidence 3444444556889999999999999999988764 689999999999999998765 2 357899999999888777
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh--------cc----ccccc
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL--------DL----KIVGF 314 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~ 314 (362)
++||+|++..+++|+.++..+++++.++|+|||++++.+...................... .. .....
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES 184 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHH
Confidence 8999999999999999999999999999999999999876543221111111111000000 00 00011
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEEEe--ceeEEEEee
Q 018003 315 SIPVLGFDDLKRIFRQFQLVVNLKLFY--GHIQHYIVK 350 (362)
Q Consensus 315 ~~~~~s~~~l~~ll~~~Gf~~v~~~~~--g~~~~~~~~ 350 (362)
...+++.+++..+|+++||+.+..... +....++++
T Consensus 185 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~ 222 (223)
T TIGR01934 185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGK 222 (223)
T ss_pred HHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEec
Confidence 245678999999999999986544443 433455544
No 34
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.77 E-value=2.4e-18 Score=144.77 Aligned_cols=162 Identities=14% Similarity=0.249 Sum_probs=123.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C-CC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PF 244 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-p~ 244 (362)
+.+.+++.+ +.+|||+|||.|.++..|.+. .+.+.+|+|++++.+..|.++ .+.++++|++. + .|
T Consensus 5 ~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f 71 (193)
T PF07021_consen 5 QIIAEWIEP--GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADF 71 (193)
T ss_pred HHHHHHcCC--CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhC
Confidence 566777766 889999999999999999886 467999999999999998874 78899999965 4 38
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHH----HHHhhhhcccccccccccCC
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL----LRQVCFLDLKIVGFSIPVLG 320 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s 320 (362)
++++||.|+++.+|+++.+|..+|+|+.|+ |...+++.||..........+.+ ....+...+...+ +.+++|
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP-Nih~~T 147 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP-NIHLCT 147 (193)
T ss_pred CCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC-Cccccc
Confidence 899999999999999999999999999776 66888888876421111111100 0000011112233 788999
Q ss_pred HHHHHHHHHHCCCEEEEEEEeceeE
Q 018003 321 FDDLKRIFRQFQLVVNLKLFYGHIQ 345 (362)
Q Consensus 321 ~~~l~~ll~~~Gf~~v~~~~~g~~~ 345 (362)
.++++.++++.|+++.+....+...
T Consensus 148 i~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 148 IKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 9999999999999999888765543
No 35
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.76 E-value=2.2e-17 Score=148.08 Aligned_cols=142 Identities=27% Similarity=0.414 Sum_probs=116.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~ 256 (362)
.+.+|||+|||+|.++..+++.++..+++|+|+++.+++.++++.. .++.++.+|+...++++++||+|++.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence 3578999999999999999999887789999999999999988632 368899999999988889999999999
Q ss_pred cccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEE
Q 018003 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVN 336 (362)
Q Consensus 257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v 336 (362)
+++|+.++..+++++.++|||||.+++.++..... ..+..... . ....+.+..++.+++.++ |..+
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~~~~~~~---~---~~~~~~~~~~~~~~l~~~-f~~~ 172 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HELRQSFG---Q---HGLRYLSLDELKALLKNS-FELL 172 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HHHHHHHH---H---hccCCCCHHHHHHHHHHh-cCCc
Confidence 99999999999999999999999999998765421 11111111 0 145678899999999988 8655
Q ss_pred EEE
Q 018003 337 LKL 339 (362)
Q Consensus 337 ~~~ 339 (362)
...
T Consensus 173 ~~~ 175 (240)
T TIGR02072 173 TLE 175 (240)
T ss_pred EEE
Confidence 443
No 36
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.76 E-value=4e-17 Score=142.12 Aligned_cols=145 Identities=19% Similarity=0.221 Sum_probs=111.1
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~ 247 (362)
.+.+.+...++.+|||+|||+|.++..+++++. +|+|+|+|+.+++.++++.+.. ...++.+.++|+..++++ +
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~ 94 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAE---NLDNLHTAVVDLNNLTFD-G 94 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHc---CCCcceEEecChhhCCcC-C
Confidence 445555555678999999999999999999875 9999999999999999887765 134688899999887764 5
Q ss_pred cceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEc-cCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003 248 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYI-VDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL 324 (362)
Q Consensus 248 ~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 324 (362)
+||+|++..+++|++ +...+++++.++|||||.+++.+.. .+.. .. ..+ ....++.+++
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~~----------------~~~-~~~~~~~~el 156 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-PC----------------TVG-FPFAFKEGEL 156 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-CC----------------CCC-CCCccCHHHH
Confidence 799999999999886 4568999999999999997655432 2211 00 001 1244788899
Q ss_pred HHHHHHCCCEEEEE
Q 018003 325 KRIFRQFQLVVNLK 338 (362)
Q Consensus 325 ~~ll~~~Gf~~v~~ 338 (362)
.+.++ ||+++..
T Consensus 157 ~~~~~--~~~~~~~ 168 (197)
T PRK11207 157 RRYYE--GWEMVKY 168 (197)
T ss_pred HHHhC--CCeEEEe
Confidence 98887 8977654
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.76 E-value=4e-17 Score=148.42 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=117.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
..++..+...++.+|||||||+|.++..+++..+..+++|+|+|+.|++.|+++ ..++.++.+|+..++ +.
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQ-PP 91 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccC-CC
Confidence 456666666778899999999999999999887777999999999999999986 356889999998765 45
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHH--Hhhhhcccccc-cccccCCHHH
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR--QVCFLDLKIVG-FSIPVLGFDD 323 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~s~~~ 323 (362)
++||+|+++.+++|++|+..+++++.++|||||.+++..+..... .....+..+. ..+...+...+ ....+.+...
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 170 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDE-PSHVLMREVAENGPWEQNLPDRGARRAPLPPPHA 170 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCC-HHHHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence 689999999999999999999999999999999999976542111 1101111111 00110001011 0234567888
Q ss_pred HHHHHHHCCCEE
Q 018003 324 LKRIFRQFQLVV 335 (362)
Q Consensus 324 l~~ll~~~Gf~~ 335 (362)
+.+++.++|+.+
T Consensus 171 ~~~~l~~~g~~v 182 (258)
T PRK01683 171 YYDALAPAACRV 182 (258)
T ss_pred HHHHHHhCCCce
Confidence 999999999854
No 38
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=7.3e-18 Score=133.09 Aligned_cols=106 Identities=28% Similarity=0.391 Sum_probs=88.4
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCCCCCCCcceEEEec
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAG 255 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~p~~~~~fD~V~~~ 255 (362)
|+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++... ....++.++++|+ ..... .+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--GLSDRITFVQGDAEFDPDF-LEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT--TTTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECccccCccc-CCCCCEEEEC
Confidence 578999999999999999999656679999999999999999998433 2368999999999 33332 3569999999
Q ss_pred c-cccCC---CCHHHHHHHHHhhccCCcEEEEEE
Q 018003 256 A-AIHCW---SSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 256 ~-vl~h~---~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
. +++++ .++..+++++.+.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 55544 345789999999999999999876
No 39
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.74 E-value=6.4e-17 Score=140.60 Aligned_cols=147 Identities=15% Similarity=0.150 Sum_probs=110.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
..+.+.+...++.+|||+|||+|.++..+++++. +|+|+|+|+.+++.++++.+.. ..++.+..+|+...+++
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~- 92 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARE----NLPLRTDAYDINAAALN- 92 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHh----CCCceeEeccchhcccc-
Confidence 3455555555678999999999999999999875 9999999999999999887665 23477888888766654
Q ss_pred CcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003 247 SSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL 324 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 324 (362)
++||+|++..+++|++ +...+++++.++|||||++++.+.......+ ...+ ....+++.++
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~----------------~~~~-~~~~~~~~el 155 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP----------------CHMP-FSFTFKEDEL 155 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC----------------CCCC-cCccCCHHHH
Confidence 5799999999999985 3468999999999999997766543221100 0001 2245889999
Q ss_pred HHHHHHCCCEEEEEE
Q 018003 325 KRIFRQFQLVVNLKL 339 (362)
Q Consensus 325 ~~ll~~~Gf~~v~~~ 339 (362)
.++++ +|+++...
T Consensus 156 ~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 156 RQYYA--DWELLKYN 168 (195)
T ss_pred HHHhC--CCeEEEee
Confidence 99886 58766544
No 40
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.73 E-value=1.8e-16 Score=141.92 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=121.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-C
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F 244 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~ 244 (362)
++.+...+...++.+|||+|||+|.++..+.+.+. +++++|+++.+++.+++++... ..++.++..|+...+ .
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALES----GLKIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHc----CCceEEEecCHHHhhhh
Confidence 34555555556788999999999999999988764 8999999999999999887665 346788888887664 3
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHH-HHhhhhc-ccccccccccCCHH
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-RQVCFLD-LKIVGFSIPVLGFD 322 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~s~~ 322 (362)
..++||+|++..+++|++++..+++.+.++|+|||.+++..+..... ....... ....... ......+..+++.+
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLK---SYLLAIVGAEYVLRMLPKGTHDYKKFIKPS 187 (233)
T ss_pred cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChH---HHHHHHhhHHHHhhhcCcccCchhhcCCHH
Confidence 45789999999999999999999999999999999999887653211 0000000 0000000 01111145678999
Q ss_pred HHHHHHHHCCCEEEEEE
Q 018003 323 DLKRIFRQFQLVVNLKL 339 (362)
Q Consensus 323 ~l~~ll~~~Gf~~v~~~ 339 (362)
++.++++++||+++...
T Consensus 188 ~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 188 ELAAWLRQAGLEVQDIT 204 (233)
T ss_pred HHHHHHHHCCCeEeeee
Confidence 99999999999988664
No 41
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.73 E-value=3.3e-16 Score=145.82 Aligned_cols=164 Identities=15% Similarity=0.054 Sum_probs=121.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
..+.+.+...++.+|||||||+|.++..++++.|..+++++|. +.+++.++++++.. +...+++++.+|+...+++.
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--gl~~rv~~~~~d~~~~~~~~ 215 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--GVADRMRGIAVDIYKESYPE 215 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--CccceEEEEecCccCCCCCC
Confidence 4556666666778999999999999999999998889999998 78999999888765 23467999999997666543
Q ss_pred CcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003 247 SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL 324 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 324 (362)
+|+|++.+++|++.+. ..++++++++|||||++++.+...+... .+....+..... ..........+.+.+++
T Consensus 216 --~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~ 290 (306)
T TIGR02716 216 --ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFDYLSHYIL-GAGMPFSVLGFKEQARY 290 (306)
T ss_pred --CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CchhhHHHHHHH-HcccccccccCCCHHHH
Confidence 6999999999998765 4789999999999999999987654321 122222211111 00000002234558999
Q ss_pred HHHHHHCCCEEEEE
Q 018003 325 KRIFRQFQLVVNLK 338 (362)
Q Consensus 325 ~~ll~~~Gf~~v~~ 338 (362)
.++|+++||+.++.
T Consensus 291 ~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 291 KEILESLGYKDVTM 304 (306)
T ss_pred HHHHHHcCCCeeEe
Confidence 99999999988764
No 42
>PRK06202 hypothetical protein; Provisional
Probab=99.72 E-value=1.8e-16 Score=141.72 Aligned_cols=160 Identities=14% Similarity=0.069 Sum_probs=112.3
Q ss_pred CCCCCCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 018003 174 KPVLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~f 249 (362)
...++.+|||+|||+|.++..+++ .++..+++|+|+|+.|++.|+++... .++.+...+...++..+++|
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~f 130 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERF 130 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCCc
Confidence 334577999999999999888765 35556999999999999999886432 35677777777777777899
Q ss_pred eEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh---cccccccccccCCHHHH
Q 018003 250 DAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL---DLKIVGFSIPVLGFDDL 324 (362)
Q Consensus 250 D~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~l 324 (362)
|+|+++.++||++++ ..+++++.++++ |.+++.+...... ...-+.......... .......+..+++++++
T Consensus 131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-HHHHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 999999999999986 479999999998 5666666554311 000000000000000 00111124678999999
Q ss_pred HHHHHHCCCEEEEEEEece
Q 018003 325 KRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 325 ~~ll~~~Gf~~v~~~~~g~ 343 (362)
.+++++ ||++...+.+..
T Consensus 208 ~~ll~~-Gf~~~~~~~~~~ 225 (232)
T PRK06202 208 AALAPQ-GWRVERQWPFRY 225 (232)
T ss_pred HHHhhC-CCeEEeccceee
Confidence 999999 999877665543
No 43
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.71 E-value=4.8e-16 Score=138.20 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=116.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-CCcceEEEec
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG 255 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~ 255 (362)
.+.+|||+|||+|.++..+++.+. .++|+|+++.+++.+++++... ...++.+..+|+.+.+.. .++||+|++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKD---PLLKIEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHc---CCCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence 477999999999999998888765 7999999999999999987765 112688899998776644 3789999999
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHH-Hhhhhcc--cccccccccCCHHHHHHHHHHCC
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QVCFLDL--KIVGFSIPVLGFDDLKRIFRQFQ 332 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~s~~~l~~ll~~~G 332 (362)
++++|+.++..+++++.++|+|||.+++.+++.+. ..+..... ....... ........+++..++.++++++|
T Consensus 120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP----KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc----hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 99999999999999999999999999988765431 11111110 0000000 01111345779999999999999
Q ss_pred CEEEEEEE
Q 018003 333 LVVNLKLF 340 (362)
Q Consensus 333 f~~v~~~~ 340 (362)
|++++...
T Consensus 196 ~~i~~~~~ 203 (224)
T TIGR01983 196 LRVKDVKG 203 (224)
T ss_pred Ceeeeeee
Confidence 99887653
No 44
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.71 E-value=3.3e-16 Score=138.83 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=115.4
Q ss_pred HHHHHhhcC--CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003 166 FELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (362)
Q Consensus 166 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p 243 (362)
.+.+.+++. ..++.+|||+|||+|.++..+++.+. +++|+|+|++|++.|++++... ....++.+.++|+..++
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGR--DVAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECChhhCC
Confidence 344555555 45678999999999999999988754 9999999999999999988654 11247999999998875
Q ss_pred CCCCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003 244 FASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF 321 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 321 (362)
++||+|++..+++|++. +..+++++.+++++++++.+... . ........+...+. ...... +..+++.
T Consensus 118 ---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~--~---~~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 187 (219)
T TIGR02021 118 ---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK--T---AWLAFLKMIGELFP-GSSRAT-SAYLHPM 187 (219)
T ss_pred ---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC--c---hHHHHHHHHHhhCc-Cccccc-ceEEecH
Confidence 78999999999999864 46789999999987655543211 1 11111111111111 111112 4567899
Q ss_pred HHHHHHHHHCCCEEEEEEE
Q 018003 322 DDLKRIFRQFQLVVNLKLF 340 (362)
Q Consensus 322 ~~l~~ll~~~Gf~~v~~~~ 340 (362)
+++.++++++||+++....
T Consensus 188 ~~~~~~l~~~Gf~v~~~~~ 206 (219)
T TIGR02021 188 TDLERALGELGWKIVREGL 206 (219)
T ss_pred HHHHHHHHHcCceeeeeec
Confidence 9999999999998886643
No 45
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.70 E-value=4.2e-16 Score=135.52 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=111.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C-CC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PF 244 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-p~ 244 (362)
+.+.+.+. ++.+|||+|||+|.++..+++.. ...++|+|+++++++.+++ .++.++++|+.. + ++
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~ 71 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAF 71 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhccccc
Confidence 45566655 36799999999999999887653 3578999999999999875 256788899865 4 46
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh--cc-cccccccccCCH
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL--DL-KIVGFSIPVLGF 321 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~s~ 321 (362)
++++||+|++++++||++|+..+++++.|+++ .++++.|+.........+..+-...... .+ .....+.++++.
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 148 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTI 148 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcH
Confidence 77899999999999999999999999988765 4555555432100000000000000000 00 011115678999
Q ss_pred HHHHHHHHHCCCEEEEEEEece
Q 018003 322 DDLKRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 322 ~~l~~ll~~~Gf~~v~~~~~g~ 343 (362)
+++.++++++||++++...+.+
T Consensus 149 ~~~~~ll~~~Gf~v~~~~~~~~ 170 (194)
T TIGR02081 149 ADFEDLCGELNLRILDRAAFDV 170 (194)
T ss_pred HHHHHHHHHCCCEEEEEEEecc
Confidence 9999999999999988777644
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.69 E-value=1.9e-15 Score=129.77 Aligned_cols=125 Identities=18% Similarity=0.137 Sum_probs=103.4
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v 257 (362)
+.+|||+|||+|..+..++...+..+|+|+|+++.|++.|+++++.. ...+++++.+|+.+++. .++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~---~l~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL---GLKNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc---CCCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 78999999999999999988777789999999999999999998876 13459999999988876 77899999875
Q ss_pred ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEE
Q 018003 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNL 337 (362)
Q Consensus 258 l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~ 337 (362)
+.++..+++++.++|||||++++.... .....+..+.+..|+.+.+
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~-------------------------------~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGR-------------------------------DPEEEIAELPKALGGKVEE 166 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCC-------------------------------ChHHHHHHHHHhcCceEee
Confidence 467889999999999999999977532 1233577788888997666
Q ss_pred EEEe
Q 018003 338 KLFY 341 (362)
Q Consensus 338 ~~~~ 341 (362)
.+.+
T Consensus 167 ~~~~ 170 (187)
T PRK00107 167 VIEL 170 (187)
T ss_pred eEEE
Confidence 5544
No 47
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.68 E-value=8.2e-16 Score=129.94 Aligned_cols=159 Identities=15% Similarity=0.139 Sum_probs=122.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
..+...+...+..+|.|+|||+|..+..++++.|+..++|+|-|++|++.|+++ .++..|..+|+..+. +.
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~ 90 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PE 90 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CC
Confidence 456777788888999999999999999999999999999999999999999887 688999999998875 46
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHH--hhhhcccccc-cccccCCHHH
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--VCFLDLKIVG-FSIPVLGFDD 323 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~s~~~ 323 (362)
..+|+++++.+|++++|-..+|..+...|.|||+|.+..|..-.. +....+...-. .+...+...+ ......+...
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-psH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-PSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCc-hhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 789999999999999999999999999999999999988865322 11112222111 0110001100 1355678888
Q ss_pred HHHHHHHCCCEE
Q 018003 324 LKRIFRQFQLVV 335 (362)
Q Consensus 324 l~~ll~~~Gf~~ 335 (362)
..++|...+-++
T Consensus 170 Yy~lLa~~~~rv 181 (257)
T COG4106 170 YYELLAPLACRV 181 (257)
T ss_pred HHHHhCccccee
Confidence 999998776643
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.68 E-value=1.3e-15 Score=140.46 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=106.8
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~ 256 (362)
++++|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++++.. ..++.+...|+...++ +++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~----~l~v~~~~~D~~~~~~-~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKE----NLNIRTGLYDINSASI-QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEechhcccc-cCCccEEEEcc
Confidence 356999999999999999999875 9999999999999999988765 3478888999877665 67899999999
Q ss_pred cccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCE
Q 018003 257 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV 334 (362)
Q Consensus 257 vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~ 334 (362)
+++|++ +...+++++.++|+|||++++..+....... ...+ ....+++.+++++++. |+
T Consensus 193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~----------------~~~p-~~~~~~~~el~~~~~~--~~ 253 (287)
T PRK12335 193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP----------------CPMP-FSFTFKEGELKDYYQD--WE 253 (287)
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC----------------CCCC-CCcccCHHHHHHHhCC--CE
Confidence 999986 4468999999999999998776543221100 0001 2455889999999864 87
Q ss_pred EEEE
Q 018003 335 VNLK 338 (362)
Q Consensus 335 ~v~~ 338 (362)
+++.
T Consensus 254 i~~~ 257 (287)
T PRK12335 254 IVKY 257 (287)
T ss_pred EEEE
Confidence 7654
No 49
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.68 E-value=2.8e-15 Score=138.64 Aligned_cols=166 Identities=16% Similarity=0.159 Sum_probs=109.3
Q ss_pred HHHHHHHhhcCC---CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCC--CCCCCEEEEEec
Q 018003 164 KEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--FPKENFLLVRAD 238 (362)
Q Consensus 164 ~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~d 238 (362)
..++.+.+++.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++...... ....++.+..+|
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 344555555543 2578999999999999999998865 999999999999999998765310 012467888888
Q ss_pred CCCCCCCCCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccccc
Q 018003 239 ISRLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSI 316 (362)
Q Consensus 239 ~~~~p~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (362)
+..+ +++||+|++..+++|+++.. .+++.+.+ +.+||.++...+. . ....++..+.+.+. ...... ..
T Consensus 206 l~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~--~--~~~~~l~~~g~~~~-g~~~~~-r~ 275 (315)
T PLN02585 206 LESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPK--T--LYYDILKRIGELFP-GPSKAT-RA 275 (315)
T ss_pred hhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCc--c--hHHHHHHHHHhhcC-CCCcCc-ee
Confidence 8654 47899999999999997653 45666665 4566554422221 1 11112222222111 000001 12
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003 317 PVLGFDDLKRIFRQFQLVVNLKLFY 341 (362)
Q Consensus 317 ~~~s~~~l~~ll~~~Gf~~v~~~~~ 341 (362)
.++++++++++|+++||++.+....
T Consensus 276 y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 276 YLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred eeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 3568999999999999998765433
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.67 E-value=1.8e-15 Score=144.22 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=117.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
...+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|+++.+. .++.+...|...+
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l--- 225 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence 4556677777789999999999999999988764 35999999999999999998643 2578888888765
Q ss_pred CCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCC-cchhhhHHHHHhhhhcccccccccccCCHH
Q 018003 246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQVCFLDLKIVGFSIPVLGFD 322 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 322 (362)
+++||+|++..+++|+.+ +..+++++.++|||||.+++.+...+... ....|+.+ +.. + ...+.+..
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~--------yif-p-~g~lps~~ 295 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINK--------YIF-P-NGCLPSVR 295 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCcee--------eec-C-CCcCCCHH
Confidence 468999999999999964 46899999999999999999877544211 11112111 111 2 23456788
Q ss_pred HHHHHHHHCCCEEEEEEEece
Q 018003 323 DLKRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 323 ~l~~ll~~~Gf~~v~~~~~g~ 343 (362)
++...++ .||++.+...++.
T Consensus 296 ~i~~~~~-~~~~v~d~~~~~~ 315 (383)
T PRK11705 296 QIAQASE-GLFVMEDWHNFGA 315 (383)
T ss_pred HHHHHHH-CCcEEEEEecChh
Confidence 8888766 5898777655443
No 51
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.67 E-value=1.6e-17 Score=128.30 Aligned_cols=97 Identities=27% Similarity=0.398 Sum_probs=66.0
Q ss_pred EEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEeccccc
Q 018003 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIH 259 (362)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~~~vl~ 259 (362)
||||||+|.++..+.+..+..+++|+|+|+.|++.+++++.... ..+......+..+.. ...++||+|++..++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999999777799999999999999988887751 233344444433322 1125899999999999
Q ss_pred CCCCHHHHHHHHHhhccCCcEE
Q 018003 260 CWSSPSTGVAEISRVLRPGGVF 281 (362)
Q Consensus 260 h~~d~~~~l~~i~r~LkpgG~l 281 (362)
|++++..+++++.++|||||+|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999986
No 52
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.67 E-value=3.9e-15 Score=130.66 Aligned_cols=138 Identities=19% Similarity=0.206 Sum_probs=102.9
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC---------CCCCCCEEEEEecCCCCCCC-
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLLVRADISRLPFA- 245 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------~~~~~~~~~~~~d~~~~p~~- 245 (362)
.++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... -....+++++++|+..++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 3578999999999999999999987 99999999999998644321100 00134789999999887643
Q ss_pred CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003 246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD 323 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 323 (362)
.+.||.|+...+++|++.. ...++.+.++|||||++++.+...+.... .+ ....++.++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~------------------~g-pp~~~~~~e 171 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM------------------AG-PPFSVSPAE 171 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC------------------CC-cCCCCCHHH
Confidence 4679999999999999643 36899999999999998888775431100 01 234588999
Q ss_pred HHHHHHHCCCEE
Q 018003 324 LKRIFRQFQLVV 335 (362)
Q Consensus 324 l~~ll~~~Gf~~ 335 (362)
+++++.. +|.+
T Consensus 172 L~~~f~~-~~~i 182 (213)
T TIGR03840 172 VEALYGG-HYEI 182 (213)
T ss_pred HHHHhcC-CceE
Confidence 9998863 4543
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.67 E-value=1.6e-16 Score=123.19 Aligned_cols=95 Identities=32% Similarity=0.514 Sum_probs=79.9
Q ss_pred EEEEcCccchHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec-c
Q 018003 181 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-A 256 (362)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~-~ 256 (362)
|||+|||+|..+..+.+.. +..+++|+|+|++|++.++++.... ..+++++++|+.++++.+++||+|++. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999999999874 3469999999999999999998765 458999999999999888899999995 5
Q ss_pred cccCCCCH--HHHHHHHHhhccCCc
Q 018003 257 AIHCWSSP--STGVAEISRVLRPGG 279 (362)
Q Consensus 257 vl~h~~d~--~~~l~~i~r~LkpgG 279 (362)
+++|+.+. ..+++++.++|||||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 59998654 589999999999998
No 54
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.66 E-value=7.8e-15 Score=125.87 Aligned_cols=139 Identities=14% Similarity=0.165 Sum_probs=111.4
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~ 247 (362)
.+...+...++.+|||+|||+|.++..+++.++ +++|+|+++.+++.++++++.. ..++.++.+|....+ .+
T Consensus 10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~--~~ 81 (179)
T TIGR00537 10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN----NVGLDVVMTDLFKGV--RG 81 (179)
T ss_pred HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEccccccc--CC
Confidence 444555555567999999999999999999886 8999999999999999988765 346888999986654 45
Q ss_pred cceEEEecccccCCCC---------------------HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh
Q 018003 248 SIDAVHAGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF 306 (362)
Q Consensus 248 ~fD~V~~~~vl~h~~d---------------------~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
+||+|+++..+++.++ ...+++++.++|||||.+++..+...
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------- 144 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------- 144 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------
Confidence 8999999988776653 24579999999999999998765321
Q ss_pred hcccccccccccCCHHHHHHHHHHCCCEEEEEEEecee
Q 018003 307 LDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHI 344 (362)
Q Consensus 307 ~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~ 344 (362)
...++..++++.||+.......|.+
T Consensus 145 -------------~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 145 -------------GEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred -------------ChHHHHHHHHhCCCeEEEEEEeecC
Confidence 2456788999999988777777765
No 55
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.65 E-value=1.4e-14 Score=125.24 Aligned_cols=142 Identities=16% Similarity=0.058 Sum_probs=109.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p 243 (362)
.....+...+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.++++++.. ...++.++.+|+.. +
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~---~~~~i~~~~~d~~~-~ 93 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF---GCGNIDIIPGEAPI-E 93 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh---CCCCeEEEecCchh-h
Confidence 3334455667666788999999999999999998887789999999999999999988765 12468899988742 3
Q ss_pred CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD 323 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 323 (362)
+ .++||+|++....++ ...+++++.++|+|||++++..... -+..+
T Consensus 94 ~-~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~ 139 (187)
T PRK08287 94 L-PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHS 139 (187)
T ss_pred c-CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHH
Confidence 3 357999999876543 4678999999999999998864321 12346
Q ss_pred HHHHHHHCCCEEEEEEEece
Q 018003 324 LKRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 324 l~~ll~~~Gf~~v~~~~~g~ 343 (362)
+.+++++.||+.++......
T Consensus 140 ~~~~l~~~g~~~~~~~~~~~ 159 (187)
T PRK08287 140 ALAHLEKCGVSELDCVQLQV 159 (187)
T ss_pred HHHHHHHCCCCcceEEEEEE
Confidence 77899999997666544443
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.64 E-value=4.6e-15 Score=146.52 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=114.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC--CCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPF 244 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~p~ 244 (362)
..+.+.+...++.+|||+|||+|.++..+++.+. +++|+|+++.|++.+++.... ..++.++++|+. .+++
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccCC
Confidence 4556666666678999999999999999998865 999999999999987664221 468899999996 4677
Q ss_pred CCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHH
Q 018003 245 ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFD 322 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 322 (362)
++++||+|++..+++|+++. ..+++++.++|||||++++.+.......... . .. . ...+.+..
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~----~---------~~-~-~~~~~~~~ 164 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK----R---------KN-N-PTHYREPR 164 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc----c---------cC-C-CCeecChH
Confidence 78899999999999999874 6899999999999999999875432110000 0 00 1 23445678
Q ss_pred HHHHHHHHCCCEEE
Q 018003 323 DLKRIFRQFQLVVN 336 (362)
Q Consensus 323 ~l~~ll~~~Gf~~v 336 (362)
.|.+++.++||...
T Consensus 165 ~~~~~f~~~~~~~~ 178 (475)
T PLN02336 165 FYTKVFKECHTRDE 178 (475)
T ss_pred HHHHHHHHheeccC
Confidence 99999999999654
No 57
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.64 E-value=8.8e-15 Score=130.60 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=110.7
Q ss_pred HHHHHhhcCC---CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 166 FELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 166 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
.+.+..++.. .++.+|||+|||+|.++..+++.+. .++|+|+|+.+++.|++++... ....++.+..+|+.
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~-- 122 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEA--GLAGNITFEVGDLE-- 122 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc--CCccCcEEEEcCch--
Confidence 3444444432 4578999999999999999998875 7999999999999999987664 11247889999854
Q ss_pred CCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCC
Q 018003 243 PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG 320 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 320 (362)
..+++||+|++..+++|++++ ..+++++.+++++++. +...+. . ........+...+. ...... +...++
T Consensus 123 -~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~-i~~~~~-~---~~~~~~~~l~~~~~-~~~~~~-~~~~~~ 194 (230)
T PRK07580 123 -SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLI-FTFAPY-T---PLLALLHWIGGLFP-GPSRTT-RIYPHR 194 (230)
T ss_pred -hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEE-EEECCc-c---HHHHHHHHhccccC-CccCCC-CccccC
Confidence 345789999999999998755 4678888887654443 322211 1 11111111111111 001111 356688
Q ss_pred HHHHHHHHHHCCCEEEEEEEec
Q 018003 321 FDDLKRIFRQFQLVVNLKLFYG 342 (362)
Q Consensus 321 ~~~l~~ll~~~Gf~~v~~~~~g 342 (362)
..++.++++++||++.+.....
T Consensus 195 ~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 195 EKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred HHHHHHHHHHCCCceEeeeecc
Confidence 9999999999999988765543
No 58
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.64 E-value=2e-15 Score=126.99 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=100.8
Q ss_pred EEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003 205 VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 205 ~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~ 284 (362)
+|+|+|++|++.|+++..........+++++++|++++|+++++||+|++..+++|++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998876532111134799999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCcchhhhHHHH--------Hhh---hhccccc-ccccccCCHHHHHHHHHHCCCEEEEEEE--eceeEEEEe
Q 018003 285 TYIVDGPFNLIPFSRLLR--------QVC---FLDLKIV-GFSIPVLGFDDLKRIFRQFQLVVNLKLF--YGHIQHYIV 349 (362)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~-~~~~~~~s~~~l~~ll~~~Gf~~v~~~~--~g~~~~~~~ 349 (362)
++...... .......+. ... ...+.+. .....+.+++++.++|+++||+.+.... +|....+++
T Consensus 81 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 158 (160)
T PLN02232 81 DFNKSNQS-VTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA 158 (160)
T ss_pred ECCCCChH-HHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence 87653221 110000000 000 0011111 0024667999999999999998765544 344444443
No 59
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.63 E-value=1.7e-14 Score=125.94 Aligned_cols=102 Identities=13% Similarity=0.185 Sum_probs=85.6
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~ 256 (362)
++.+|||+|||+|.++..+.+..+..+++|+|+|+.|++.|+++ ..++.+.++|+.. |+++++||+|++..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~--------~~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--------LPNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh--------CCCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 46789999999999999998875567999999999999999885 3457788999887 88889999999999
Q ss_pred cccCCC--CHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 257 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 257 vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
+++|++ +...+++++.|++ ++.+++.+...+
T Consensus 114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 999995 2357888888887 567777776543
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.62 E-value=2e-14 Score=123.19 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=85.5
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~ 256 (362)
++.+|||+|||+|.++..++..++..+|+|+|+|+.|++.++++++.. ...++.++++|+..++ ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~---~~~~i~~i~~d~~~~~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL---GLNNVEIVNGRAEDFQ-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh---CCCCeEEEecchhhcc-ccCCccEEEehh
Confidence 378999999999999999888777779999999999999999887765 1347999999998874 357899999876
Q ss_pred cccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
+.+...+++.+.++|+|||.+++..
T Consensus 118 ----~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 ----LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3456678899999999999999763
No 61
>PRK06922 hypothetical protein; Provisional
Probab=99.62 E-value=4.5e-15 Score=146.29 Aligned_cols=107 Identities=22% Similarity=0.365 Sum_probs=93.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEe
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA 254 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~ 254 (362)
++.+|||+|||+|.++..+++..++.+++|+|+|+.|++.|+++.... ..++.++++|+..+| +++++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 578999999999999999988878889999999999999999876554 357888999998887 77899999999
Q ss_pred cccccCCC-------------CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 255 GAAIHCWS-------------SPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 255 ~~vl~h~~-------------d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
+.++||+. ++..+++++.++|||||.+++.+..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 99998762 4578999999999999999998754
No 62
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.61 E-value=3.8e-14 Score=124.87 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=102.6
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC---------CCCCCCEEEEEecCCCCCC
Q 018003 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLLVRADISRLPF 244 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------~~~~~~~~~~~~d~~~~p~ 244 (362)
...++.+|||+|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... -....++.+.++|+..++.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence 334578999999999999999999987 99999999999998753211100 0013578999999988753
Q ss_pred C-CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003 245 A-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF 321 (362)
Q Consensus 245 ~-~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 321 (362)
. .+.||.|+...+++|++.. ...++.+.++|||||++++.+...... . ..+ ....++.
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~-~-----------------~~g-Pp~~~~~ 172 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQE-E-----------------LAG-PPFSVSD 172 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCc-c-----------------CCC-CCCCCCH
Confidence 3 3589999999999999633 478999999999999866655543211 0 001 2246899
Q ss_pred HHHHHHHHHCCCEEE
Q 018003 322 DDLKRIFRQFQLVVN 336 (362)
Q Consensus 322 ~~l~~ll~~~Gf~~v 336 (362)
+++++++.. +|.+.
T Consensus 173 ~el~~~~~~-~~~i~ 186 (218)
T PRK13255 173 EEVEALYAG-CFEIE 186 (218)
T ss_pred HHHHHHhcC-CceEE
Confidence 999999864 25443
No 63
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=1.9e-14 Score=115.34 Aligned_cols=114 Identities=23% Similarity=0.186 Sum_probs=92.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA 245 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~ 245 (362)
..+...+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++.. ...++.++.+|+.. ++..
T Consensus 9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF---GVSNIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh---CCCceEEEeccccccChhh
Confidence 4455566666678999999999999999999876679999999999999999987765 23578888888765 3333
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
.++||+|++....++ ...+++++.+.|||||.+++...
T Consensus 86 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence 468999999776543 45889999999999999998753
No 64
>PRK04266 fibrillarin; Provisional
Probab=99.60 E-value=3.9e-14 Score=125.31 Aligned_cols=141 Identities=11% Similarity=0.116 Sum_probs=102.1
Q ss_pred hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC----CCCCC
Q 018003 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASS 247 (362)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----p~~~~ 247 (362)
.+...++.+|||+|||+|.++..+++......|+|+|+++.|++.+.++++.. .++.++.+|+... ++ .+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l-~~ 140 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHV-VE 140 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhc-cc
Confidence 46777899999999999999999998754468999999999999887765543 5789999998642 22 25
Q ss_pred cceEEEecccccCCCCHH---HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003 248 SIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL 324 (362)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 324 (362)
+||+|++. +.+|. .+++++.++|||||.++++.+...-. + ... +...+ ++.
T Consensus 141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d-----~------------~~~--~~~~~--~~~ 194 (226)
T PRK04266 141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSID-----V------------TKD--PKEIF--KEE 194 (226)
T ss_pred cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccccc-----C------------cCC--HHHHH--HHH
Confidence 69999853 33443 46899999999999999975532100 0 000 11111 344
Q ss_pred HHHHHHCCCEEEEEEEecee
Q 018003 325 KRIFRQFQLVVNLKLFYGHI 344 (362)
Q Consensus 325 ~~ll~~~Gf~~v~~~~~g~~ 344 (362)
.++++++||+.++....+..
T Consensus 195 ~~~l~~aGF~~i~~~~l~p~ 214 (226)
T PRK04266 195 IRKLEEGGFEILEVVDLEPY 214 (226)
T ss_pred HHHHHHcCCeEEEEEcCCCC
Confidence 59999999999988776533
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.59 E-value=1.3e-14 Score=126.89 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=90.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCCC--CCCCcceEEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP--FASSSIDAVH 253 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~p--~~~~~fD~V~ 253 (362)
++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++... ...++.++++|+ +.++ +++++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE---GLTNLRLLCGDAVEVLLDMFPDGSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc---CCCCEEEEecCHHHHHHHHcCccccceEE
Confidence 467999999999999999988877779999999999999999988765 136799999999 7666 6778999999
Q ss_pred ecccccCCC--------CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 254 AGAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 254 ~~~vl~h~~--------d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
++....+.. ....+++++.++|||||.+++.+..
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 876543222 1367899999999999999998754
No 66
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.58 E-value=2.9e-14 Score=121.79 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=102.7
Q ss_pred HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCc
Q 018003 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (362)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~ 248 (362)
+.+.+...+++++||+|||.|+.+.+|+++|. .|+++|.|+..++.+++..+.. .-.+...+.|+....++ +.
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~----~l~i~~~~~Dl~~~~~~-~~ 94 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEE----GLDIRTRVADLNDFDFP-EE 94 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT----T-TEEEEE-BGCCBS-T-TT
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhc----CceeEEEEecchhcccc-CC
Confidence 44445555678999999999999999999998 9999999999999998877666 45699999999888765 67
Q ss_pred ceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003 249 IDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR 326 (362)
Q Consensus 249 fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 326 (362)
||+|++..+++|++.+ ..+++.+...++|||++++.+...... . + ...+ ....+.+.++..
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d--~-p-------------~~~~-~~f~~~~~EL~~ 157 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD--Y-P-------------CPSP-FPFLLKPGELRE 157 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS--S----------------SS---S--B-TTHHHH
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC--C-C-------------CCCC-CCcccCHHHHHH
Confidence 9999999999998644 478999999999999999877643211 0 0 0001 223456678888
Q ss_pred HHHHCCCEEEE
Q 018003 327 IFRQFQLVVNL 337 (362)
Q Consensus 327 ll~~~Gf~~v~ 337 (362)
.+. ||++++
T Consensus 158 ~y~--dW~il~ 166 (192)
T PF03848_consen 158 YYA--DWEILK 166 (192)
T ss_dssp HTT--TSEEEE
T ss_pred HhC--CCeEEE
Confidence 875 687654
No 67
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.58 E-value=1.7e-14 Score=121.70 Aligned_cols=141 Identities=14% Similarity=0.187 Sum_probs=103.2
Q ss_pred hhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcce
Q 018003 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (362)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD 250 (362)
..++...-.++||+|||.|.++..|+.+.. +++++|+|+.+++.|+++++.. +++.+.++|+.+. .+.++||
T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~FD 108 (201)
T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRFD 108 (201)
T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EE
T ss_pred HhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCee
Confidence 346666667999999999999999999975 9999999999999999998875 7999999999775 3678999
Q ss_pred EEEecccccCCCCH---HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHH
Q 018003 251 AVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRI 327 (362)
Q Consensus 251 ~V~~~~vl~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 327 (362)
+|++..+++++.+. ..+++.+...|+|||.+++.++... .-+ . + .+.+..+++..+
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-------~c~----~-w---------gh~~ga~tv~~~ 167 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-------NCR----R-W---------GHAAGAETVLEM 167 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-------HHH----H-T---------T-S--HHHHHHH
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-------ccc----c-c---------CcccchHHHHHH
Confidence 99999999999764 4689999999999999999876311 000 1 1 233588899999
Q ss_pred HHHCCCEEEEEEEe
Q 018003 328 FRQFQLVVNLKLFY 341 (362)
Q Consensus 328 l~~~Gf~~v~~~~~ 341 (362)
|++. |+.++....
T Consensus 168 ~~~~-~~~~~~~~~ 180 (201)
T PF05401_consen 168 LQEH-LTEVERVEC 180 (201)
T ss_dssp HHHH-SEEEEEEEE
T ss_pred HHHH-hhheeEEEE
Confidence 9875 655555443
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=5.7e-14 Score=123.06 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=92.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p 243 (362)
....+.+.+...++.+|||+|||+|..+..+++.. ...+|+++|+++++++.|++++... +...++.++.+|+....
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--GYWGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEECCcccCC
Confidence 34667777777788999999999999998888763 3458999999999999999988765 11246899999997654
Q ss_pred CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
...++||+|++..+++|++ +++.+.|+|||++++..
T Consensus 138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 4567899999999988874 46889999999998754
No 69
>PRK14968 putative methyltransferase; Provisional
Probab=99.57 E-value=1.9e-13 Score=118.01 Aligned_cols=138 Identities=18% Similarity=0.272 Sum_probs=102.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
..+.+.+...++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.+++++... +....++.++.+|+.. ++.+
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~-~~~~ 88 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLN-NIRNNGVEVIRSDLFE-PFRG 88 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEeccccc-cccc
Confidence 444555544667899999999999999999885 49999999999999999988765 1111128888998865 3445
Q ss_pred CcceEEEecccccCCC---------------------CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhh
Q 018003 247 SSIDAVHAGAAIHCWS---------------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVC 305 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~---------------------d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
.+||+|+++..+.+.. ....+++++.++|||||.+++..+..
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------- 151 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------- 151 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-----------------
Confidence 5899999876543211 13467999999999999998765321
Q ss_pred hhcccccccccccCCHHHHHHHHHHCCCEEEEE
Q 018003 306 FLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLK 338 (362)
Q Consensus 306 ~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~ 338 (362)
...+.+.++++++||++...
T Consensus 152 -------------~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 152 -------------TGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred -------------CCHHHHHHHHHHCCCeeeee
Confidence 23456889999999976543
No 70
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.56 E-value=2.1e-13 Score=123.23 Aligned_cols=140 Identities=19% Similarity=0.280 Sum_probs=102.7
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
++.+.... .++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.|+++++.+ .....+.+..+
T Consensus 110 l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~--~~~~~~~~~~~-------- 176 (250)
T PRK00517 110 LEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN--GVELNVYLPQG-------- 176 (250)
T ss_pred HHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc--CCCceEEEccC--------
Confidence 34444433 3578999999999999988887765 36999999999999999988765 11122332222
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK 325 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 325 (362)
+.+||+|+++...+. ...+++++.++|||||.++++.... ...+.+.
T Consensus 177 ~~~fD~Vvani~~~~---~~~l~~~~~~~LkpgG~lilsgi~~------------------------------~~~~~v~ 223 (250)
T PRK00517 177 DLKADVIVANILANP---LLELAPDLARLLKPGGRLILSGILE------------------------------EQADEVL 223 (250)
T ss_pred CCCcCEEEEcCcHHH---HHHHHHHHHHhcCCCcEEEEEECcH------------------------------hhHHHHH
Confidence 226999998754322 3577899999999999999875431 1235688
Q ss_pred HHHHHCCCEEEEEEEeceeEEEEeeC
Q 018003 326 RIFRQFQLVVNLKLFYGHIQHYIVKI 351 (362)
Q Consensus 326 ~ll~~~Gf~~v~~~~~g~~~~~~~~k 351 (362)
..+++.||+.++....+.+..+..+|
T Consensus 224 ~~l~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 224 EAYEEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred HHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence 89999999999888887776666665
No 71
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.56 E-value=3e-14 Score=129.43 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=85.2
Q ss_pred CCCeEEEEcCccch----HHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHhh------cC-----------C----
Q 018003 177 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQ------ES-----------N---- 226 (362)
Q Consensus 177 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~~~~a~~~~~~------~~-----------~---- 226 (362)
++.+|+|+|||+|. ++..+.+.++ ..+++|+|+|+.|++.|++.+-. .. +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 3444544432 46899999999999999985310 00 0
Q ss_pred ---CCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEE
Q 018003 227 ---FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 227 ---~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~ 285 (362)
....++.|.++|+...+++.++||+|+|.++++|++++. .+++++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 001368999999999887788999999999999997554 79999999999999999853
No 72
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.55 E-value=3.6e-13 Score=117.44 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=93.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
+........+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.++++++.. +...++.++.+|+.+.
T Consensus 27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--GVLNNIVLIKGEAPEI 104 (198)
T ss_pred HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh--CCCCCeEEEEechhhh
Confidence 33344456777778999999999999999888765 45569999999999999999988765 1135789999998663
Q ss_pred -CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 243 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 243 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+...+.||+|++.. ...++..+++++.++|||||++++...
T Consensus 105 l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 105 LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 33346899999854 235778899999999999999997543
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=1.6e-13 Score=120.76 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=92.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
.....+.+.+...++.+|||||||+|.++..+++. +...+|+++|+++++++.++++++.. ...++.++.+|....
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~---g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL---GYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEECCcccC
Confidence 33466777777788999999999999999888876 34469999999999999999998875 245799999998766
Q ss_pred CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
....+.||+|++....++++ +.+.+.|||||++++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 55668899999988776652 45677899999998854
No 74
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.53 E-value=2.9e-13 Score=127.31 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=95.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PF 244 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~ 244 (362)
+.+.+.+....+..+||||||+|.++..+++..|+..++|+|+++.+++.+.+++... ...++.++++|+..+ .+
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~---gL~NV~~i~~DA~~ll~~~ 188 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL---NLKNLLIINYDARLLLELL 188 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHHhhhhC
Confidence 3455555555667999999999999999999998889999999999999999988765 246899999998654 46
Q ss_pred CCCcceEEEecccccCCCCH------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003 245 ASSSIDAVHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~------~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
+++++|.|++++...|...+ ..+++++.|+|+|||.+.+.|-..
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 78999999975432222111 579999999999999999988543
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.53 E-value=5.7e-14 Score=122.04 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=88.6
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCcceEEEe
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHA 254 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~fD~V~~ 254 (362)
..+|||||||+|.++..+++..++.+++|+|+++.+++.|++++... ...++.++++|+..++ ++++++|.|++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~---~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL---GLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh---CCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 56999999999999999999988889999999999999999887765 2358999999997653 45668999998
Q ss_pred cccccCCCCH--------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003 255 GAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 255 ~~vl~h~~d~--------~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
+....+.... ..+++++.++|||||.|++.+...
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 7653332211 468999999999999999987543
No 76
>PLN03075 nicotianamine synthase; Provisional
Probab=99.53 E-value=1.4e-13 Score=124.93 Aligned_cols=107 Identities=10% Similarity=0.115 Sum_probs=88.7
Q ss_pred CCCeEEEEcCccchHHHHH--HHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003 177 LGGNIIDASCGSGLFSRIF--AKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l--~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~ 254 (362)
++.+|+|||||.|.++..+ +...++++++|+|+++++++.|++.+... .+...++.|..+|+.+.+-..+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccccCCcCEEEE
Confidence 6789999999988554443 34567789999999999999999988542 12356899999999876433578999999
Q ss_pred cccccCC--CCHHHHHHHHHhhccCCcEEEEEE
Q 018003 255 GAAIHCW--SSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 255 ~~vl~h~--~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
. +++++ .++.++++++.+.|+|||.+++-.
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 99988 689999999999999999999876
No 77
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.53 E-value=2.7e-13 Score=111.69 Aligned_cols=131 Identities=22% Similarity=0.321 Sum_probs=106.6
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v 257 (362)
..+|||+|||+|.++..|++.+.....+|+|.|+.+++.|+...++. .....++|.+.|+....+..+.||+|+--..
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GFSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CCCcceeEEEeeccCCcccccceeEEeecCc
Confidence 34999999999999999999987677999999999999998887776 2234499999999988888899999997776
Q ss_pred ccCCC---C-----HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHH
Q 018003 258 IHCWS---S-----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFR 329 (362)
Q Consensus 258 l~h~~---d-----~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 329 (362)
+..+. | +...+..+.++|+|||+|+|.. .-||.+++.+.++
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS-------------------------------CN~T~dELv~~f~ 194 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS-------------------------------CNFTKDELVEEFE 194 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe-------------------------------cCccHHHHHHHHh
Confidence 65441 1 2356888999999999999864 2367888999999
Q ss_pred HCCCEEEEEEEe
Q 018003 330 QFQLVVNLKLFY 341 (362)
Q Consensus 330 ~~Gf~~v~~~~~ 341 (362)
..||+....+..
T Consensus 195 ~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 195 NFNFEYLSTVPT 206 (227)
T ss_pred cCCeEEEEeecc
Confidence 999977665443
No 78
>PRK14967 putative methyltransferase; Provisional
Probab=99.52 E-value=1.1e-12 Score=116.50 Aligned_cols=153 Identities=16% Similarity=0.108 Sum_probs=101.6
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEE
Q 018003 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~ 253 (362)
...++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++... ..++.++.+|+... +++++||+|+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~----~~~~~~~~~d~~~~-~~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA----GVDVDVRRGDWARA-VEFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh----CCeeEEEECchhhh-ccCCCeeEEE
Confidence 34567899999999999999988865 358999999999999999988765 34688889998653 4567899999
Q ss_pred ecccccCCCC---------------------HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccc
Q 018003 254 AGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIV 312 (362)
Q Consensus 254 ~~~vl~h~~d---------------------~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (362)
++--...-.. ...+++++.++|||||++++...... .....+..+..... .....
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~---~~~~~~~~l~~~g~-~~~~~ 182 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS---GVERTLTRLSEAGL-DAEVV 182 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc---CHHHHHHHHHHCCC-CeEEE
Confidence 9743221110 24578899999999999998765442 11223333322111 11111
Q ss_pred ccccccCCHHH--HHHHHHHCCCEEE
Q 018003 313 GFSIPVLGFDD--LKRIFRQFQLVVN 336 (362)
Q Consensus 313 ~~~~~~~s~~~--l~~ll~~~Gf~~v 336 (362)
..+...+.... ...++++.||...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (223)
T PRK14967 183 ASQWIPFGPVLRARAAWLERRGLLPP 208 (223)
T ss_pred EeeccCccHHHHHHHHHHHHcCCCCC
Confidence 11222233322 3477899999744
No 79
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.52 E-value=7.3e-13 Score=119.78 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=104.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
+..+..+.+.+.. .+.+|||+|||+|.++..+++..+..+++|+|+++.+++.+++++... ...++.++.+|+..
T Consensus 74 ~~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~~~~~~d~~~- 148 (251)
T TIGR03534 74 EELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL---GLDNVTFLQSDWFE- 148 (251)
T ss_pred HHHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---CCCeEEEEECchhc-
Confidence 3344555555543 356899999999999999999877779999999999999999988765 13469999999866
Q ss_pred CCCCCcceEEEeccccc------CCC------C--------------HHHHHHHHHhhccCCcEEEEEEEccCCCCcchh
Q 018003 243 PFASSSIDAVHAGAAIH------CWS------S--------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~------h~~------d--------------~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~ 296 (362)
++++++||+|+++-... ++. + ...+++++.++|+|||.+++...
T Consensus 149 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------- 218 (251)
T TIGR03534 149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------- 218 (251)
T ss_pred cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------
Confidence 45578899999853221 111 0 13578999999999999987531
Q ss_pred hhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEE
Q 018003 297 FSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLK 338 (362)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~ 338 (362)
+...+.+.++++++||+.+..
T Consensus 219 ---------------------~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 219 ---------------------YDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred ---------------------ccHHHHHHHHHHhCCCCceEE
Confidence 122457889999999977654
No 80
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.51 E-value=4.3e-13 Score=118.51 Aligned_cols=112 Identities=17% Similarity=0.173 Sum_probs=91.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p 243 (362)
....+.+.+...++.+|||+|||+|.++..+++... ..+|+++|+++.+++.|+++++.. ...++.++.+|.....
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~---g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL---GLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC---CCCCeEEEECCcccCC
Confidence 346677777778899999999999999999988743 457999999999999999998876 2467999999997654
Q ss_pred CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
...++||+|++.....++ .+.+.+.|||||++++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 445689999998776655 356788999999999864
No 81
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.50 E-value=3.5e-13 Score=118.22 Aligned_cols=101 Identities=21% Similarity=0.241 Sum_probs=81.1
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------CC
Q 018003 175 PVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA 245 (362)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------~~ 245 (362)
..++.+|||+|||+|.++..+++.. +.+.|+|+|+++ | . ...++.++++|+...+ +.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~--------~~~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----D--------PIVGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----c--------CCCCcEEEecCCCChHHHHHHHHHhC
Confidence 3558899999999999999988874 446999999988 1 1 1357899999998853 56
Q ss_pred CCcceEEEecccccCCCCH-----------HHHHHHHHhhccCCcEEEEEEEccC
Q 018003 246 SSSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
+++||+|++..+.++..++ ..+|+++.++|||||.|++.++..+
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 7899999998877665443 3589999999999999999876543
No 82
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.50 E-value=3e-13 Score=115.00 Aligned_cols=117 Identities=24% Similarity=0.344 Sum_probs=92.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
...+.+.+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.++++++.+ ...++.++..|..... +
T Consensus 20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n---~~~~v~~~~~d~~~~~-~ 95 (170)
T PF05175_consen 20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN---GLENVEVVQSDLFEAL-P 95 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT---TCTTEEEEESSTTTTC-C
T ss_pred HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc---Cccccccccccccccc-c
Confidence 34555555544678999999999999999999998778999999999999999999887 1233999999986533 3
Q ss_pred CCcceEEEecccccCCCC-----HHHHHHHHHhhccCCcEEEEEEE
Q 018003 246 SSSIDAVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d-----~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+++||+|+++--++.-.+ ...++++..+.|||||.+++...
T Consensus 96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 689999999977655443 35789999999999999987654
No 83
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=9.7e-13 Score=119.10 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=117.2
Q ss_pred ccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEE
Q 018003 155 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL 234 (362)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~ 234 (362)
-.+.+++....++.+.+++. ++.+|||+|||+|-++...++.|. ..++|+|+++.+++.|++++..+ .....+..
T Consensus 142 GTG~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N--~v~~~~~~ 216 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN--GVELLVQA 216 (300)
T ss_pred CCCCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc--CCchhhhc
Confidence 34556666677777877776 489999999999999999999986 57999999999999999999887 11111222
Q ss_pred EEecCCCCCCCCCcceEEEecccccCCCCH-HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccc
Q 018003 235 VRADISRLPFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVG 313 (362)
Q Consensus 235 ~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~-~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (362)
...+....+ ..++||+|+++-. .++ ..+...+.+.|||||+++++-...+
T Consensus 217 ~~~~~~~~~-~~~~~DvIVANIL----A~vl~~La~~~~~~lkpgg~lIlSGIl~~------------------------ 267 (300)
T COG2264 217 KGFLLLEVP-ENGPFDVIVANIL----AEVLVELAPDIKRLLKPGGRLILSGILED------------------------ 267 (300)
T ss_pred ccccchhhc-ccCcccEEEehhh----HHHHHHHHHHHHHHcCCCceEEEEeehHh------------------------
Confidence 222332222 2368999999763 233 4788999999999999999864321
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEEEeceeEEEEeeC
Q 018003 314 FSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKI 351 (362)
Q Consensus 314 ~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~k 351 (362)
..+.+.+.+.+.||++++....+.+..+..+|
T Consensus 268 ------q~~~V~~a~~~~gf~v~~~~~~~eW~~i~~kr 299 (300)
T COG2264 268 ------QAESVAEAYEQAGFEVVEVLEREEWVAIVGKR 299 (300)
T ss_pred ------HHHHHHHHHHhCCCeEeEEEecCCEEEEEEEc
Confidence 13468889999999999998887777766665
No 84
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.50 E-value=8.3e-13 Score=122.48 Aligned_cols=107 Identities=19% Similarity=0.293 Sum_probs=82.5
Q ss_pred CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCCCC----cce
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS----SID 250 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~~~----~fD 250 (362)
++.+|||+|||+|..+..+.+..+ ..+|+|+|+|++|++.+++++... .+..++.++++|+.+ +++... ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD--YPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh--CCCceEEEEEEcccchhhhhcccccCCeE
Confidence 467999999999999999998854 358999999999999999987764 123457778999976 343332 233
Q ss_pred EEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEE
Q 018003 251 AVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 251 ~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~ 285 (362)
++++..++++++. ...+|++++++|+|||.+++..
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 5555567888753 3478999999999999999754
No 85
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.49 E-value=3.3e-14 Score=121.18 Aligned_cols=158 Identities=19% Similarity=0.142 Sum_probs=115.2
Q ss_pred cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE
Q 018003 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235 (362)
Q Consensus 156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (362)
..+|..|+...++|. .....+-.++||+|||||.....+...-. +.+|+|+|++|++.|.++ ..--.+.
T Consensus 105 kL~Y~vP~~l~emI~-~~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eK--------g~YD~L~ 173 (287)
T COG4976 105 KLGYSVPELLAEMIG-KADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEK--------GLYDTLY 173 (287)
T ss_pred HhcCccHHHHHHHHH-hccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhc--------cchHHHH
Confidence 345555665544444 44444467999999999999999888765 899999999999999985 1112344
Q ss_pred EecCCCC-C-CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccc
Q 018003 236 RADISRL-P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVG 313 (362)
Q Consensus 236 ~~d~~~~-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (362)
++|+..+ + ..+..||+|++..|+.++.+...++.-....|+|||.|.++.-....... + ...+
T Consensus 174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f------------~l~p 238 (287)
T COG4976 174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG---F------------VLGP 238 (287)
T ss_pred HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC---e------------ecch
Confidence 5554322 2 34678999999999999999999999999999999999998765543211 1 1111
Q ss_pred ccccc-CCHHHHHHHHHHCCCEEEEEEE
Q 018003 314 FSIPV-LGFDDLKRIFRQFQLVVNLKLF 340 (362)
Q Consensus 314 ~~~~~-~s~~~l~~ll~~~Gf~~v~~~~ 340 (362)
+.+| .++..++.+++..||+++....
T Consensus 239 -s~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 239 -SQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred -hhhhccchHHHHHHHHhcCceEEEeec
Confidence 2222 4667899999999999887654
No 86
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.49 E-value=8.7e-14 Score=119.84 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=112.2
Q ss_pred CeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC----CCCCCCcceEE
Q 018003 179 GNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDAV 252 (362)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~p~~~~~fD~V 252 (362)
.+|||||||.|.....+.+..++ ..++++|.|+.+++..+++.... ..++...+.|+.. -|...+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceE
Confidence 38999999999999999887665 78999999999999998875544 4566666666643 34667899999
Q ss_pred EecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcc--cccccccccCCHHHHHHHH
Q 018003 253 HAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDL--KIVGFSIPVLGFDDLKRIF 328 (362)
Q Consensus 253 ~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~l~~ll 328 (362)
++.++|--++ ....++.++.++|||||.+++.++..... ...-.+-.+.+...+ +..|....+|+.+++..++
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl---aqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f 225 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL---AQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELF 225 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH---HHHhccCCceeecceEEccCCceeeeccHHHHHHHH
Confidence 9999998774 23588999999999999999998876321 110000011111111 2234345889999999999
Q ss_pred HHCCCEEEEE
Q 018003 329 RQFQLVVNLK 338 (362)
Q Consensus 329 ~~~Gf~~v~~ 338 (362)
.++||..++.
T Consensus 226 ~~agf~~~~~ 235 (264)
T KOG2361|consen 226 TKAGFEEVQL 235 (264)
T ss_pred Hhcccchhcc
Confidence 9999976544
No 87
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.48 E-value=8.3e-12 Score=104.68 Aligned_cols=120 Identities=22% Similarity=0.246 Sum_probs=101.5
Q ss_pred CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (362)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 240 (362)
+.++.....+..|.+.++.+++|||||+|..+..++..++.++++++|-++++++..+++.++. ..+|+.++.+|+.
T Consensus 18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f---g~~n~~vv~g~Ap 94 (187)
T COG2242 18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF---GVDNLEVVEGDAP 94 (187)
T ss_pred cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh---CCCcEEEEeccch
Confidence 3445556677889999999999999999999999998899999999999999999999998887 3789999999986
Q ss_pred CCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 241 ~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
+.--...+||.|+.... .+...+|+.+...|||||++++..-.
T Consensus 95 ~~L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 95 EALPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred HhhcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 53112227999999887 45678899999999999999986543
No 88
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.48 E-value=7e-13 Score=124.46 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=93.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
.+.+++.+.....++|||+|||+|.++..+++.++..+++++|+|+.+++.++++++.. .....++.+|.... .
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n----~l~~~~~~~D~~~~--~ 258 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN----GLEGEVFASNVFSD--I 258 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCEEEEcccccc--c
Confidence 35566666655566899999999999999999888789999999999999999988876 23456777787542 2
Q ss_pred CCcceEEEecccccCCC-----CHHHHHHHHHhhccCCcEEEEEEE
Q 018003 246 SSSIDAVHAGAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~-----d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
.++||+|+++..+|+.. ....+++++.+.|||||.+++...
T Consensus 259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 57899999998887642 346899999999999999998764
No 89
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.47 E-value=1.7e-12 Score=122.02 Aligned_cols=118 Identities=23% Similarity=0.290 Sum_probs=93.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~ 244 (362)
....+.......++.+|||+|||+|.++..++..+. .++|+|+++.|++.++++++.. +..++.+..+|+.++|+
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~---g~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHY---GIEDFFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHh---CCCCCeEEecchhcCCc
Confidence 344555555666788999999999999888777654 9999999999999999988765 13347899999999998
Q ss_pred CCCcceEEEecccc------c-C-C-CCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 245 ASSSIDAVHAGAAI------H-C-W-SSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 245 ~~~~fD~V~~~~vl------~-h-~-~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
++++||+|+++.-. . + . .-...+++++.++|||||++++..+.
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 88899999996321 1 1 1 11368999999999999999988764
No 90
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.46 E-value=3.4e-13 Score=107.17 Aligned_cols=107 Identities=22% Similarity=0.332 Sum_probs=87.7
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEec
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG 255 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~~ 255 (362)
|.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.+++++... ....++.++++|+...+ +.+++||+|+++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN--GLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC--TTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc--cCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 4689999999999999999998 569999999999999999998875 23467999999997765 678999999998
Q ss_pred ccccCCC--------CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 256 AAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 256 ~vl~h~~--------d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
--..... .-..+++++.++|||||.+++.+++
T Consensus 78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6654321 1247899999999999999998763
No 91
>PTZ00146 fibrillarin; Provisional
Probab=99.46 E-value=3.5e-12 Score=115.46 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=96.4
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC---CCCCCc
Q 018003 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSS 248 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---p~~~~~ 248 (362)
+...++.+|||+|||+|.++..+++. ++...|+++|+++.+.+...+.... ..++.++.+|+... ....++
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCC
Confidence 34567899999999999999999987 3456899999998765444443322 25888999998542 223457
Q ss_pred ceEEEecccccCCCCH-HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHH
Q 018003 249 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRI 327 (362)
Q Consensus 249 fD~V~~~~vl~h~~d~-~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 327 (362)
||+|++... . +|. ..++.++.++|||||.|++........ . .. + ....|+ +++ +.
T Consensus 203 vDvV~~Dva--~-pdq~~il~~na~r~LKpGG~~vI~ika~~id-~----------------g~-~-pe~~f~-~ev-~~ 258 (293)
T PTZ00146 203 VDVIFADVA--Q-PDQARIVALNAQYFLKNGGHFIISIKANCID-S----------------TA-K-PEVVFA-SEV-QK 258 (293)
T ss_pred CCEEEEeCC--C-cchHHHHHHHHHHhccCCCEEEEEEeccccc-c----------------CC-C-HHHHHH-HHH-HH
Confidence 999998764 2 343 456679999999999999953321100 0 00 0 112233 344 78
Q ss_pred HHHCCCEEEEEEEec
Q 018003 328 FRQFQLVVNLKLFYG 342 (362)
Q Consensus 328 l~~~Gf~~v~~~~~g 342 (362)
|+++||+.++.....
T Consensus 259 L~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 259 LKKEGLKPKEQLTLE 273 (293)
T ss_pred HHHcCCceEEEEecC
Confidence 899999988877654
No 92
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.46 E-value=1.6e-12 Score=122.96 Aligned_cols=119 Identities=16% Similarity=0.138 Sum_probs=94.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
.+.+++.++...+++|||+|||+|.++..+++++|..+|+++|.|+.+++.|+++++.+......++.++..|.... +.
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 45677777766567999999999999999999988889999999999999999998765111123678888887542 23
Q ss_pred CCcceEEEecccccCC---CC--HHHHHHHHHhhccCCcEEEEEE
Q 018003 246 SSSIDAVHAGAAIHCW---SS--PSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~---~d--~~~~l~~i~r~LkpgG~li~~~ 285 (362)
.++||+|+++-.+|.. .+ ...+++++.++|+|||.+++..
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4689999998666543 22 2478999999999999999985
No 93
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.46 E-value=2.4e-12 Score=112.11 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=91.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L 242 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~ 242 (362)
+....+...+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++.. ...++.++.+|+.. +
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~---~~~~v~~~~~d~~~~~ 103 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF---GVKNVEVIEGSAPECL 103 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCCeEEEECchHHHH
Confidence 3334567777777889999999999999999887766679999999999999999988765 13578999998854 2
Q ss_pred CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
+.....+|.++... ..+...+++++.++|+|||.+++..+.
T Consensus 104 ~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 104 AQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred hhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 22223467766532 235678999999999999999998764
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.45 E-value=2.3e-12 Score=118.72 Aligned_cols=102 Identities=20% Similarity=0.274 Sum_probs=80.6
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~ 256 (362)
++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.|++++..+ ....++....++... ...++||+|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n--~~~~~~~~~~~~~~~--~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELN--QVSDRLQVKLIYLEQ--PIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc--CCCcceEEEeccccc--ccCCCceEEEEec
Confidence 478999999999999988887763 58999999999999999988765 223456666665332 3357899999986
Q ss_pred cccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
..++ ...++.++.++|||||.++++..
T Consensus 234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 234 LAEV---IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred CHHH---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 5443 35789999999999999998764
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=99.45 E-value=3.7e-12 Score=114.04 Aligned_cols=144 Identities=14% Similarity=0.133 Sum_probs=106.5
Q ss_pred cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE
Q 018003 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235 (362)
Q Consensus 156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (362)
++.|++|...+..+. +....+.+|||+|||+|.++..++.+.+..+++|+|+++.+++.++++ ..++.++
T Consensus 45 ~G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n--------~~~v~~v 114 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL--------LPEAEWI 114 (279)
T ss_pred ceeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CcCCEEE
Confidence 356777777764443 233346799999999999988887765446999999999999999885 3478899
Q ss_pred EecCCCCCCCCCcceEEEecccccCCCCH--------------------HHHHHHHHhhccCCcEEEEEEEccCCCCcch
Q 018003 236 RADISRLPFASSSIDAVHAGAAIHCWSSP--------------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLI 295 (362)
Q Consensus 236 ~~d~~~~p~~~~~fD~V~~~~vl~h~~d~--------------------~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~ 295 (362)
++|+..+. ..++||+|+++..+.|.+.. ..+++....+|+|+|.+++.--..
T Consensus 115 ~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~------- 186 (279)
T PHA03411 115 TSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR------- 186 (279)
T ss_pred ECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc-------
Confidence 99998765 34689999999888775321 345677788999999776652111
Q ss_pred hhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCE
Q 018003 296 PFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV 334 (362)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~ 334 (362)
++ -..-+++++.+++|+++||.
T Consensus 187 ~~-----------------y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 187 PY-----------------YDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred cc-----------------ccccCCHHHHHHHHHhcCcE
Confidence 00 12336788999999999994
No 96
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.45 E-value=1.5e-12 Score=119.00 Aligned_cols=150 Identities=22% Similarity=0.304 Sum_probs=109.3
Q ss_pred CCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003 159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238 (362)
Q Consensus 159 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 238 (362)
+++....++.+.++... +.+|||+|||+|-++...++.|. .+|+|+|+++.+++.|+++++.+ +...++.+. .
T Consensus 145 H~TT~lcl~~l~~~~~~--g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N--~~~~~~~v~--~ 217 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKP--GKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELN--GVEDRIEVS--L 217 (295)
T ss_dssp CHHHHHHHHHHHHHSST--TSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHT--T-TTCEEES--C
T ss_pred CHHHHHHHHHHHHhccC--CCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHc--CCCeeEEEE--E
Confidence 34445556677777554 78999999999999999999885 58999999999999999998887 333355442 2
Q ss_pred CCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccccccc
Q 018003 239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPV 318 (362)
Q Consensus 239 ~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (362)
.... ..+.||+|+++-..+- ...++..+.++|+|||+++++-...
T Consensus 218 ~~~~--~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~------------------------------ 262 (295)
T PF06325_consen 218 SEDL--VEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILE------------------------------ 262 (295)
T ss_dssp TSCT--CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEG------------------------------
T ss_pred eccc--ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccH------------------------------
Confidence 2222 3488999999765332 2467888999999999999986532
Q ss_pred CCHHHHHHHHHHCCCEEEEEEEeceeEEEEeeC
Q 018003 319 LGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKI 351 (362)
Q Consensus 319 ~s~~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~k 351 (362)
-..+.+.+.+++ ||+.++....+.+..+..+|
T Consensus 263 ~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 263 EQEDEVIEAYKQ-GFELVEEREEGEWVALVFKK 294 (295)
T ss_dssp GGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEe
Confidence 123467788876 99999988888876666654
No 97
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.44 E-value=5.7e-12 Score=115.98 Aligned_cols=121 Identities=19% Similarity=0.171 Sum_probs=89.8
Q ss_pred HHHHHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003 163 EKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (362)
Q Consensus 163 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 241 (362)
+..++.+...+. ..+..+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++++.. ....++.++++|+..
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~--~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN--QLEHRVEFIQSNLFE 176 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECchhc
Confidence 333444444332 22236899999999999999999887779999999999999999998765 112359999999865
Q ss_pred CCCCCCcceEEEec-------------ccccCCC------------CHHHHHHHHHhhccCCcEEEEEEE
Q 018003 242 LPFASSSIDAVHAG-------------AAIHCWS------------SPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 242 ~p~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+++..+||+|+++ .++.|-| ....+++++.+.|+|||++++...
T Consensus 177 -~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 177 -PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred -cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 3344589999996 2333332 234678899999999999987653
No 98
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.44 E-value=3.4e-12 Score=112.49 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=90.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p 243 (362)
.....+...+...++.+|||+|||+|.++..+++... +++++|+++++++.++++++.. ...++.+..+|.....
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQL---GLHNVSVRHGDGWKGW 139 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHC---CCCceEEEECCcccCC
Confidence 3346667777778889999999999999988887754 8999999999999999998775 2456999999985532
Q ss_pred CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
...++||+|++...++++ .+++.+.|+|||++++...
T Consensus 140 ~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 234789999998877665 3567899999999998765
No 99
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.43 E-value=1e-11 Score=114.07 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=85.0
Q ss_pred hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceE
Q 018003 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (362)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~ 251 (362)
.+...++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++.. +...++.++++|+.. ++++++||+
T Consensus 116 ~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--~~~~~i~~~~~D~~~-~~~~~~fD~ 192 (284)
T TIGR03533 116 WLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--GLEDRVTLIQSDLFA-ALPGRKYDL 192 (284)
T ss_pred HhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECchhh-ccCCCCccE
Confidence 34333457999999999999999999877789999999999999999998775 123579999999854 234568999
Q ss_pred EEecc------cccCC-----CCH--------------HHHHHHHHhhccCCcEEEEEE
Q 018003 252 VHAGA------AIHCW-----SSP--------------STGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 252 V~~~~------vl~h~-----~d~--------------~~~l~~i~r~LkpgG~li~~~ 285 (362)
|+++- .+.++ .+| ..+++++.+.|+|||++++..
T Consensus 193 Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 193 IVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred EEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99861 11111 112 356888999999999999764
No 100
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.43 E-value=7.4e-13 Score=112.41 Aligned_cols=110 Identities=28% Similarity=0.367 Sum_probs=87.2
Q ss_pred HHHHhhcCCC--CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCCC
Q 018003 167 ELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP 243 (362)
Q Consensus 167 ~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~p 243 (362)
++.++.+... .+.-|||||||+|.-+..+...|. .++|+|+|+.|+++|.++ . -.-.++.+|+ +.+|
T Consensus 38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~--e------~egdlil~DMG~Glp 107 (270)
T KOG1541|consen 38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVER--E------LEGDLILCDMGEGLP 107 (270)
T ss_pred HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHh--h------hhcCeeeeecCCCCC
Confidence 4444444433 367899999999999999999886 899999999999999973 1 1234777887 6689
Q ss_pred CCCCcceEEEecccccCCC-------CHH----HHHHHHHhhccCCcEEEEEEE
Q 018003 244 FASSSIDAVHAGAAIHCWS-------SPS----TGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~-------d~~----~~l~~i~r~LkpgG~li~~~~ 286 (362)
|+.++||.+++...++++- +|. .++..++.+|++|++.++..+
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 9999999999988876652 333 578889999999999998755
No 101
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.43 E-value=9e-12 Score=118.02 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=107.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p 243 (362)
...+.+...+. ++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++++.. ..++.++++|+.+..
T Consensus 240 ~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 240 HLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----GARVEFAHGSWFDTD 313 (423)
T ss_pred HHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEcchhccc
Confidence 33444444443 356999999999999999988777779999999999999999998876 347999999986543
Q ss_pred C-CCCcceEEEeccccc-----CC----------------CC----HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhh
Q 018003 244 F-ASSSIDAVHAGAAIH-----CW----------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297 (362)
Q Consensus 244 ~-~~~~fD~V~~~~vl~-----h~----------------~d----~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~ 297 (362)
+ ..++||+|+++--.- +. .| ...+++++.+.|+|||.+++....
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------- 383 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------- 383 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc----------
Confidence 3 245799999964210 00 01 125566777899999998865421
Q ss_pred hHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE--EeceeEEEEeeCcc
Q 018003 298 SRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL--FYGHIQHYIVKIPS 353 (362)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~--~~g~~~~~~~~kp~ 353 (362)
-..+.+.+++++.||..++.. ..|......+++++
T Consensus 384 ---------------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~~ 420 (423)
T PRK14966 384 ---------------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMK 420 (423)
T ss_pred ---------------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEhh
Confidence 234578899999999655433 34555555555443
No 102
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.42 E-value=6.2e-12 Score=110.49 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=91.2
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc------C---CCCCCCEEEEEecCCCCC
Q 018003 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S---NFPKENFLLVRADISRLP 243 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~---~~~~~~~~~~~~d~~~~p 243 (362)
+...++.+||+.|||.|..+.+|+..|. +|+|+|+|+.+++.+.+..... . -....++.++++|+.+++
T Consensus 39 l~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3444578999999999999999999998 8999999999999986632100 0 011357999999999986
Q ss_pred CC---CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEcc
Q 018003 244 FA---SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 244 ~~---~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
.. .+.||+|+-...+.+++.. .+..+.+.++|+|||.+++.+...
T Consensus 117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 32 2689999999999999643 478999999999999999887654
No 103
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.41 E-value=4.4e-12 Score=107.94 Aligned_cols=157 Identities=18% Similarity=0.241 Sum_probs=99.5
Q ss_pred hhHHHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCC-CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 018003 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220 (362)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~ 220 (362)
.-..|+.++++....... .-++.+.+++...+ +..|.|+|||.+.++..+... . .|...|+-.
T Consensus 40 ~F~~YH~Gfr~Qv~~WP~----nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDLva--------- 103 (219)
T PF05148_consen 40 LFDIYHEGFRQQVKKWPV----NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDLVA--------- 103 (219)
T ss_dssp HHHHHHHHHHHHHCTSSS-----HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS----------
T ss_pred HHHHHHHHHHHHHhcCCC----CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeeccC---------
Confidence 334577788877643322 22345555554443 568999999999999765432 2 799999965
Q ss_pred HhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHH
Q 018003 221 VQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300 (362)
Q Consensus 221 ~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~ 300 (362)
.+-.+..+|+..+|++++++|++++.-+|.- .|...+++|..|+|||||.|.|.+..
T Consensus 104 ---------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~------------- 160 (219)
T PF05148_consen 104 ---------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVK------------- 160 (219)
T ss_dssp ---------SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEG-------------
T ss_pred ---------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEec-------------
Confidence 2334788999999999999999999988876 58899999999999999999998753
Q ss_pred HHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEE-eceeEEEEeeCc
Q 018003 301 LRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLF-YGHIQHYIVKIP 352 (362)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~-~g~~~~~~~~kp 352 (362)
.++-+.+.+.+.+++.||+...... ..++..+.-+|.
T Consensus 161 ---------------SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~ 198 (219)
T PF05148_consen 161 ---------------SRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKI 198 (219)
T ss_dssp ---------------GG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-
T ss_pred ---------------ccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEc
Confidence 3444678899999999998876543 344555554444
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=1.6e-11 Score=112.67 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=103.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
+...+.+.......++.+|||+|||+|.++..++...+..+++|+|+++.+++.+++++... ...++.++.+|+...
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~ 170 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEP 170 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCc
Confidence 33444555444555678999999999999999999887789999999999999999987721 246899999998543
Q ss_pred CCCCCcceEEEecccc------c--------CC------------CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchh
Q 018003 243 PFASSSIDAVHAGAAI------H--------CW------------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl------~--------h~------------~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~ 296 (362)
+..++||+|+++.-. + |- .....+++++.++|+|||.+++....
T Consensus 171 -~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~--------- 240 (275)
T PRK09328 171 -LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY--------- 240 (275)
T ss_pred -CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------
Confidence 335789999985221 1 11 11246788888999999999985310
Q ss_pred hhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEE
Q 018003 297 FSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLK 338 (362)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~ 338 (362)
...+.+.+++++.||..+..
T Consensus 241 ----------------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 241 ----------------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ----------------------hHHHHHHHHHHhCCCceeEE
Confidence 11345888999999976554
No 105
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.40 E-value=1.4e-11 Score=108.42 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=107.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC---------CCCCCCEEE
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLL 234 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------~~~~~~~~~ 234 (362)
..+....+.+...++.+||..|||.|..+..|+++|. +|+|+|+|+.+++.+.+...... .....++.+
T Consensus 24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 3334444445566778999999999999999999987 99999999999999854322100 012346899
Q ss_pred EEecCCCCCCCC-CcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccc
Q 018003 235 VRADISRLPFAS-SSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKI 311 (362)
Q Consensus 235 ~~~d~~~~p~~~-~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (362)
+++|+..++... ++||+|+-...+.-++ ...+..+.+.++|+|||.+++.+...+.. ..
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~------------------~~ 163 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQG------------------EM 163 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CS------------------CS
T ss_pred EEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCc------------------CC
Confidence 999999876433 5799999998888775 33588999999999999966665543211 00
Q ss_pred cccccccCCHHHHHHHHHHCCCEEEEEEE
Q 018003 312 VGFSIPVLGFDDLKRIFRQFQLVVNLKLF 340 (362)
Q Consensus 312 ~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~ 340 (362)
.+ .....+.+++++++. .+|++.....
T Consensus 164 ~G-PPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 164 EG-PPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp SS-SS----HHHHHHHHT-TTEEEEEEEE
T ss_pred CC-cCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 11 233468889999998 8887765544
No 106
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=3.6e-11 Score=111.49 Aligned_cols=105 Identities=19% Similarity=0.137 Sum_probs=82.6
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc-
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA- 256 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~- 256 (362)
..+|||+|||+|.++..++...+..+++++|+|+.+++.|+++++.. +...++.++++|+... ++.++||+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~--~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPP 210 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH--GLEDRVTLIESDLFAA-LPGRRYDLIVSNPP 210 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--CCCCcEEEEECchhhh-CCCCCccEEEECCC
Confidence 36899999999999999999877789999999999999999998875 1234699999998542 2356899999872
Q ss_pred -----c-------ccCCCC------------HHHHHHHHHhhccCCcEEEEEE
Q 018003 257 -----A-------IHCWSS------------PSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 257 -----v-------l~h~~d------------~~~~l~~i~r~LkpgG~li~~~ 285 (362)
. ++|.+. ...+++++.+.|+|||.+++..
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 112221 1367899999999999999754
No 107
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.37 E-value=1.2e-11 Score=111.14 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=105.8
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~ 247 (362)
.+.......+..+|+|||+|.|.++..++++.|+.+++..|+ |..++.+++ ..++.++.+|+. -+++.
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~- 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV- 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS-
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc-
Confidence 444555555667999999999999999999999999999999 888888887 369999999997 55555
Q ss_pred cceEEEecccccCCCCHH--HHHHHHHhhccCC--cEEEEEEEccCCCCcchhhh--HHHHHhhhhcccccccccccCCH
Q 018003 248 SIDAVHAGAAIHCWSSPS--TGVAEISRVLRPG--GVFVGTTYIVDGPFNLIPFS--RLLRQVCFLDLKIVGFSIPVLGF 321 (362)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~--~~l~~i~r~Lkpg--G~li~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~ 321 (362)
+|++++.++||+++|.. .+|+++++.|+|| |+|+|.++..+......... ..+....+ -... ...-.|.
T Consensus 159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~m---l~~~-~G~~rt~ 233 (241)
T PF00891_consen 159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNM---LVLT-GGKERTE 233 (241)
T ss_dssp -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHH---HHHH-SSS-EEH
T ss_pred -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHH---HHhc-CCCCcCH
Confidence 99999999999998765 7899999999999 99999998865442222211 01222221 1111 2455788
Q ss_pred HHHHHHHH
Q 018003 322 DDLKRIFR 329 (362)
Q Consensus 322 ~~l~~ll~ 329 (362)
++|+.+|.
T Consensus 234 ~e~~~ll~ 241 (241)
T PF00891_consen 234 EEWEALLK 241 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88888874
No 108
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.36 E-value=1.6e-11 Score=108.45 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=94.9
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CC
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FA 245 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~ 245 (362)
.|..+......++|||+|||+|..+..++++....+++|||+.+++.+.|++.++.+ ....++.++++|+..+. ..
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cchhceeEehhhHHHhhhccc
Confidence 555666666688999999999999999999966689999999999999999998874 45789999999998764 33
Q ss_pred CCcceEEEecccccCC------------------CCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 246 SSSIDAVHAGAAIHCW------------------SSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~------------------~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
..+||+|+|+--..-. .+.+..++...++|||||.+.+..+
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 4579999998432211 1245779999999999999998754
No 109
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.35 E-value=5.4e-12 Score=110.14 Aligned_cols=113 Identities=20% Similarity=0.232 Sum_probs=87.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p 243 (362)
....+.+.+..+++.+|||||||+|+++..++.. ++...|+++|.++..++.|+++++.. ...++.++++|...--
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~---~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL---GIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH---TTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh---ccCceeEEEcchhhcc
Confidence 3567888888999999999999999999999887 55558999999999999999999876 2458999999985533
Q ss_pred CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
-..+.||.|++......+ |. .+.+.||+||++++-.-
T Consensus 137 ~~~apfD~I~v~~a~~~i--p~----~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVPEI--PE----ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp GGG-SEEEEEESSBBSS----H----HHHHTEEEEEEEEEEES
T ss_pred ccCCCcCEEEEeeccchH--HH----HHHHhcCCCcEEEEEEc
Confidence 345689999999888754 33 36777999999997554
No 110
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.34 E-value=2.5e-11 Score=105.49 Aligned_cols=174 Identities=17% Similarity=0.186 Sum_probs=120.4
Q ss_pred CCcCCCCccchhcccCc-hhhHHHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCC
Q 018003 124 KDYGELMSPATEFFRMP-FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFS 202 (362)
Q Consensus 124 ~~Y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~ 202 (362)
..|......+..+|..+ ..-..|+.+++...........+..++.|... .....|.|+|||.+.++. ... .
T Consensus 129 qLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r---~~~~vIaD~GCGEakiA~--~~~---~ 200 (325)
T KOG3045|consen 129 QLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRR---PKNIVIADFGCGEAKIAS--SER---H 200 (325)
T ss_pred hhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhC---cCceEEEecccchhhhhh--ccc---c
Confidence 34555444455555543 33446777888766433333333333444332 234688999999998775 122 2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEE
Q 018003 203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282 (362)
Q Consensus 203 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li 282 (362)
.|+.+|+-+ .+-+++.+|+..+|+++++.|++++..+|.- .|...+++|+.|+|||||.++
T Consensus 201 kV~SfDL~a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~ 261 (325)
T KOG3045|consen 201 KVHSFDLVA------------------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLY 261 (325)
T ss_pred ceeeeeeec------------------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEE
Confidence 799999854 4566889999999999999999998888765 588999999999999999999
Q ss_pred EEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEE-eceeEEEEeeCc
Q 018003 283 GTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLF-YGHIQHYIVKIP 352 (362)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~-~g~~~~~~~~kp 352 (362)
|.+. ..++-+...+.+.|...||....... ...+..+..+|+
T Consensus 262 IAEv----------------------------~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~ 304 (325)
T KOG3045|consen 262 IAEV----------------------------KSRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKT 304 (325)
T ss_pred EEeh----------------------------hhhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecC
Confidence 9864 23556667799999999997654433 334455555544
No 111
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.2e-11 Score=104.45 Aligned_cols=111 Identities=21% Similarity=0.178 Sum_probs=93.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~ 244 (362)
...++.+.+.+.++.+|||||||+|+.+..+++... +|+.+|..++..+.|+++++.. +..|+.+.++|...---
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~l---g~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETL---GYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHc---CCCceEEEECCcccCCC
Confidence 357788889999999999999999999999999865 9999999999999999999887 35679999999855322
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
..+.||.|+.......+|++ +.+.|||||++++-.-
T Consensus 135 ~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence 45789999999988876543 5678999999998654
No 112
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=4.8e-11 Score=116.02 Aligned_cols=118 Identities=22% Similarity=0.276 Sum_probs=92.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--C
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F 244 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~ 244 (362)
..+...+.+.++.+|||+|||+|..+..+++.++...|+++|+++.+++.++++++.. ..++.++++|+..++ +
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~----g~~~~~~~~D~~~~~~~~ 309 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL----GLKATVIVGDARDPAQWW 309 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEcCcccchhhc
Confidence 3455567777899999999999999999998875579999999999999999998876 335789999998754 3
Q ss_pred CCCcceEEEecc------cccCC------CCH----------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003 245 ASSSIDAVHAGA------AIHCW------SSP----------STGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 245 ~~~~fD~V~~~~------vl~h~------~d~----------~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
..++||.|++.. ++.+- ..+ ..+|+++.++|||||++++++-..
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 456899999532 22211 122 268999999999999999887543
No 113
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.32 E-value=2e-11 Score=93.55 Aligned_cols=101 Identities=27% Similarity=0.406 Sum_probs=84.7
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-CCCcceEEEecccc
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAAI 258 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-~~~~fD~V~~~~vl 258 (362)
+|+|+|||.|.++..+.+ ....+++++|+++.+++.+++..... ...++.++..|+.+... ..++||+|++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence 589999999999999888 34569999999999999988533222 25678999999987653 46789999999999
Q ss_pred cC-CCCHHHHHHHHHhhccCCcEEEEE
Q 018003 259 HC-WSSPSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 259 ~h-~~d~~~~l~~i~r~LkpgG~li~~ 284 (362)
++ ..++..+++.+.+.|+|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98 778889999999999999999876
No 114
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.32 E-value=7.3e-11 Score=101.08 Aligned_cols=172 Identities=16% Similarity=0.167 Sum_probs=120.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCE-EEEEecCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISRLPF 244 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~~p~ 244 (362)
++.|.+++... +.+|||||||||..+.++++..|.....-.|+++..+...++.+.... ..|+ .-+..|+...+.
T Consensus 15 l~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~---~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 15 LEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG---LPNVRPPLALDVSAPPW 90 (204)
T ss_pred HHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC---CcccCCCeEeecCCCCC
Confidence 45666666552 226999999999999999999998889999999988766665554431 1222 233456554422
Q ss_pred --------CCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccc
Q 018003 245 --------ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGF 314 (362)
Q Consensus 245 --------~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (362)
..++||+|++.+++|-.+-. ..+++.+.++|+|||.|++.-|...+.....+--..+...+. ...+
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr---~rdp- 166 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLR---SRDP- 166 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHh---cCCC-
Confidence 24589999999999987643 588999999999999999988765433222222223333322 2223
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEEEeceeE
Q 018003 315 SIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQ 345 (362)
Q Consensus 315 ~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~~ 345 (362)
..-+.+.+++..+.+++||+..+.+.+..-+
T Consensus 167 ~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN 197 (204)
T PF06080_consen 167 EWGIRDIEDVEALAAAHGLELEEDIDMPANN 197 (204)
T ss_pred CcCccCHHHHHHHHHHCCCccCcccccCCCC
Confidence 5677889999999999999988777665543
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.32 E-value=2.7e-11 Score=112.48 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=88.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~ 244 (362)
...+.+.+...++.+|||+|||+|.++..+++... ...|+++|+++++++.|+++++.. +..++.++++|+...+.
T Consensus 69 ~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~---g~~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 69 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL---GIENVIFVCGDGYYGVP 145 (322)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEeCChhhccc
Confidence 35566666777789999999999999999988653 247999999999999999988765 24578999999876654
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
..++||+|++...+++++ ..+.+.|+|||++++..
T Consensus 146 ~~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 556899999987766542 34678999999988753
No 116
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.31 E-value=1.2e-10 Score=103.84 Aligned_cols=119 Identities=20% Similarity=0.329 Sum_probs=95.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 241 (362)
...+..+...++..||.+|||.|.|+|.++..+++. ++.++|+..|+.++.++.|+++++.. +...++.+.+.|+..
T Consensus 26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GLDDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TCCTTEEEEES-GGC
T ss_pred CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CCCCCceeEecceec
Confidence 445678888999999999999999999999999975 77789999999999999999999987 446689999999965
Q ss_pred CCCC---CCcceEEEecccccCCCCHHHHHHHHHhhc-cCCcEEEEEEEcc
Q 018003 242 LPFA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTYIV 288 (362)
Q Consensus 242 ~p~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpgG~li~~~~~~ 288 (362)
-.|. +..+|+|+.- +++|..++..+.++| ||||++.+-.|+.
T Consensus 104 ~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp G--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 4442 3579999853 589999999999999 9999999887763
No 117
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.31 E-value=5.9e-11 Score=102.60 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=77.2
Q ss_pred hhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------ 243 (362)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------ 243 (362)
.+....++.+|||+|||+|.++..+++.. ...+++++|+++.+ . ..++.++++|+.+.+
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---------~~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---------IENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---------CCCceEEEeeCCChhHHHHHH
Confidence 34445678999999999999999888774 44589999999854 1 246788999987643
Q ss_pred --CCCCcceEEEecccc--------cCCC---CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 244 --FASSSIDAVHAGAAI--------HCWS---SPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 244 --~~~~~fD~V~~~~vl--------~h~~---d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
++.++||+|++.... +|.. +...+++++.++|+|||++++..+.
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 346689999986432 2211 1357899999999999999987644
No 118
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=2.8e-11 Score=117.91 Aligned_cols=120 Identities=23% Similarity=0.236 Sum_probs=95.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p- 243 (362)
...+...+.+.++.+|||+|||+|..+..+++.. ..+.++++|+++.+++.+++++++. +..++.++++|+..++
T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~---g~~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL---GLKSIKILAADSRNLLE 317 (434)
T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc---CCCeEEEEeCChhhccc
Confidence 3455566777889999999999999999888863 3468999999999999999998876 2357899999998765
Q ss_pred ---CCCCcceEEEec------ccccCCCC----------------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 244 ---FASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 244 ---~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
...++||.|++. .++.+-++ ...+|.++.++|||||+++.+|-..
T Consensus 318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 445789999963 45555444 2477999999999999999887543
No 119
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.30 E-value=3.2e-11 Score=117.28 Aligned_cols=122 Identities=22% Similarity=0.215 Sum_probs=94.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~ 244 (362)
....+...+.+.++.+|||+|||+|..+..+++..+.++++++|+++.+++.+++++++. +. ...+.+..+|....+.
T Consensus 226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-g~-~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-GL-TIKAETKDGDGRGPSQ 303 (426)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-CC-CeEEEEeccccccccc
Confidence 344566677888899999999999999999988754579999999999999999999876 11 1233446677665443
Q ss_pred --CCCcceEEEec------ccccCCCC----------------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 245 --ASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 245 --~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
..++||.|++. +++.+.++ ...+|.++.++|||||.++.+|-..
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 46789999953 45666554 2478999999999999999998765
No 120
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.30 E-value=2.3e-11 Score=106.99 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=80.3
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~ 256 (362)
...++||||+|.|..+..++.... +|+++|.|+.|....+++ +..++..+ ++.-.+.+||+|.|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl~~~--~w~~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVLDID--DWQQTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEEehh--hhhccCCceEEEeehh
Confidence 456899999999999999988765 899999999998777763 44444333 3332356899999999
Q ss_pred cccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
+|..-.+|..+|++|++.|+|+|+++++...
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 9999999999999999999999999987654
No 121
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.30 E-value=8.3e-11 Score=116.28 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=80.3
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc-
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA- 256 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~- 256 (362)
+.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++... +...++.++.+|+.. +++.++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--EVTDRIQIIHSNWFE-NIEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc--CCccceeeeecchhh-hCcCCCccEEEECCC
Confidence 46899999999999999988777779999999999999999998765 223578999999754 23456899999852
Q ss_pred -------------cccCCCC------------HHHHHHHHHhhccCCcEEEEE
Q 018003 257 -------------AIHCWSS------------PSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 257 -------------vl~h~~d------------~~~~l~~i~r~LkpgG~li~~ 284 (362)
++.|-+. ...+++++.++|+|||.+++.
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2222211 124677888999999999875
No 122
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=7.5e-11 Score=103.31 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=100.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p 243 (362)
....+...++..+|.+|||.|.|+|.++.+|+.. ++.++|+.+|+.++.++.|++++... +...++.+..+|+.+.-
T Consensus 82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGDRVTLKLGDVREGI 159 (256)
T ss_pred CHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--ccccceEEEeccccccc
Confidence 3567888889999999999999999999999974 67789999999999999999999886 23445899999998876
Q ss_pred CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
+.+ .||+|+.- +++|..+++.+.++|||||.+++..|+.
T Consensus 160 ~~~-~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 160 DEE-DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ccc-ccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 555 89999853 5899999999999999999999988765
No 123
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.28 E-value=2.7e-11 Score=104.20 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=100.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~ 256 (362)
...+.||.|+|.|+.+..+.... ..+|..+|+.+..++.|++.+... ...-..+++..++++....++||+|++.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~---~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD---NPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG---GCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc---CCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 35689999999999998775543 359999999999999999876552 12346677777777654567999999999
Q ss_pred cccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCE
Q 018003 257 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV 334 (362)
Q Consensus 257 vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~ 334 (362)
++.|+.|.. .+|+.+...|+|+|++++-+......... + .... ..-.-+.+.++++++++|++
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~---~-----------D~~D-sSvTRs~~~~~~lF~~AGl~ 195 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDE---F-----------DEED-SSVTRSDEHFRELFKQAGLR 195 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEE---E-----------ETTT-TEEEEEHHHHHHHHHHCT-E
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcc---c-----------CCcc-CeeecCHHHHHHHHHHcCCE
Confidence 999998764 89999999999999999987765422100 0 1111 23345678999999999999
Q ss_pred EEEEEEe
Q 018003 335 VNLKLFY 341 (362)
Q Consensus 335 ~v~~~~~ 341 (362)
+++....
T Consensus 196 ~v~~~~Q 202 (218)
T PF05891_consen 196 LVKEEKQ 202 (218)
T ss_dssp EEEEEE-
T ss_pred EEEeccc
Confidence 9876554
No 124
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.26 E-value=5.9e-10 Score=99.38 Aligned_cols=168 Identities=11% Similarity=0.069 Sum_probs=123.3
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC---CCCCCcce
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSSID 250 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---p~~~~~fD 250 (362)
...-+||||.||.|..........+. .++...|.|+..++..++.+++. +...-++|.++|+.+. .--+...+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--GLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--CCccceEEEecCCCCHhHhhccCCCCC
Confidence 34679999999999998888777654 68999999999999999998886 2334459999998653 21234579
Q ss_pred EEEecccccCCCCHH---HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHH
Q 018003 251 AVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRI 327 (362)
Q Consensus 251 ~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l 327 (362)
+++.+..+|.++|-. ..|+.+.+++.|||.++.+.. ++.|-+..+-.....+....++.++.-|..++.++
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ------PwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~L 285 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ------PWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQL 285 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC------CCCcchHHHHHHHhcccCCCceEEEecCHHHHHHH
Confidence 999999999999854 578999999999999997653 23333332222222111222346788899999999
Q ss_pred HHHCCCEEE--EEEEeceeEEEEeeC
Q 018003 328 FRQFQLVVN--LKLFYGHIQHYIVKI 351 (362)
Q Consensus 328 l~~~Gf~~v--~~~~~g~~~~~~~~k 351 (362)
.+++||+.+ .+..+|.+++-+++|
T Consensus 286 v~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 286 VEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHcCCchhhheeccCCceEEEeecC
Confidence 999999653 445677777666543
No 125
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.26 E-value=3.6e-10 Score=101.97 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=82.8
Q ss_pred HHHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C
Q 018003 166 FELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P 243 (362)
Q Consensus 166 ~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p 243 (362)
++.+...+... .+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++.. +..++++|+.+. +
T Consensus 74 v~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~~l~ 147 (251)
T TIGR03704 74 VDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYDALP 147 (251)
T ss_pred HHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechhhcc
Confidence 34444444322 245899999999999999988766669999999999999999998765 247889998653 2
Q ss_pred C-CCCcceEEEecccc------c--------CCC--------C----HHHHHHHHHhhccCCcEEEEEE
Q 018003 244 F-ASSSIDAVHAGAAI------H--------CWS--------S----PSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 244 ~-~~~~fD~V~~~~vl------~--------h~~--------d----~~~~l~~i~r~LkpgG~li~~~ 285 (362)
- ..++||+|+++--. . |-+ | ...+++.+.++|||||++++..
T Consensus 148 ~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 148 TALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred hhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 13579999987421 1 110 1 1366777889999999999775
No 126
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.5e-10 Score=104.35 Aligned_cols=119 Identities=20% Similarity=0.322 Sum_probs=96.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
+.--+.+++.+....+.+|||+|||.|.++..+++..|..+++.+|.+..+++.|++++..+ ...+..++..|...-
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N---~~~~~~v~~s~~~~~ 220 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN---GVENTEVWASNLYEP 220 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc---CCCccEEEEeccccc
Confidence 33356788888887777999999999999999999999999999999999999999999876 123335666776443
Q ss_pred CCCCCcceEEEecccccCCCCH-----HHHHHHHHhhccCCcEEEEEEE
Q 018003 243 PFASSSIDAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~-----~~~l~~i~r~LkpgG~li~~~~ 286 (362)
..+ +||+|+++--+|-=.+- .+++++..+.|++||.|.+...
T Consensus 221 -v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 221 -VEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred -ccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 233 89999999887643322 3789999999999999998865
No 127
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.24 E-value=6.9e-11 Score=102.14 Aligned_cols=104 Identities=25% Similarity=0.236 Sum_probs=75.9
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccc
Q 018003 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (362)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl 258 (362)
+.++|+|||+|..+..++.... +|+|+|+|+.|++.|++..... .......+...+...+--.+++.|+|++..++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~--y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVT--YCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcc--cccCCccccccccccccCCCcceeeehhhhhH
Confidence 3899999999988888887765 9999999999999998842211 00111122222333332337899999999999
Q ss_pred cCCCCHHHHHHHHHhhccCCc-EEEEEEEc
Q 018003 259 HCWSSPSTGVAEISRVLRPGG-VFVGTTYI 287 (362)
Q Consensus 259 ~h~~d~~~~l~~i~r~LkpgG-~li~~~~~ 287 (362)
|++ |...+.+++.|+||+.| .+.+-.++
T Consensus 111 HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWF-DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred Hhh-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 987 88889999999999877 66655554
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.23 E-value=1.2e-10 Score=105.95 Aligned_cols=115 Identities=19% Similarity=0.131 Sum_probs=89.4
Q ss_pred hhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 018003 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249 (362)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~f 249 (362)
..+.+.++.+|||+|||+|..+..+++.. ..+.|+++|+++.+++.+++++++. ...++.++.+|...++...+.|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~---g~~~v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC---GVLNVAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc---CCCcEEEecCCHHHhhhhccCC
Confidence 45567788999999999999999888763 2358999999999999999999886 2357899999987766555679
Q ss_pred eEEEec------ccccCCCC----------------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 250 DAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 250 D~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
|+|++. .++.+-++ ...+|+++.++|||||+++.+|-..
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999963 22222111 1258999999999999999887544
No 129
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=1.2e-10 Score=113.08 Aligned_cols=120 Identities=15% Similarity=0.195 Sum_probs=92.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-C
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F 244 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~ 244 (362)
..+...+.+.++.+|||+|||+|..+..++... ..++|+++|+++.+++.+++++++. +..++.+.++|...++ +
T Consensus 227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~---g~~~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL---KLSSIEIKIADAERLTEY 303 (431)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc---CCCeEEEEECchhhhhhh
Confidence 344456677789999999999999998888763 3469999999999999999998876 2346889999998765 4
Q ss_pred CCCcceEEEec------ccccCCCC----------------HHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 245 ASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 245 ~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
..++||.|++. +++.+-++ ..++|.++.+.|||||.++.+|-...
T Consensus 304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 46789999963 22322221 13669999999999999999886643
No 130
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.23 E-value=9.8e-11 Score=101.43 Aligned_cols=100 Identities=22% Similarity=0.359 Sum_probs=82.4
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C--CCCCcceEEEecc
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHAGA 256 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p--~~~~~fD~V~~~~ 256 (362)
.+||||||.|.++..++...|+..++|+|+....+..+.+++... ...|+.++++|+..+ + ++++++|.|..++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 899999999999999999999999999999999999999888776 378999999999873 2 4568999999765
Q ss_pred cccCCCCH-------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003 257 AIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 257 vl~h~~d~-------------~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
||| ..++..+.++|+|||.+.+.|-.
T Consensus 97 -----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 97 -----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ----------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred -----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 565 27899999999999999998743
No 131
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.22 E-value=3.3e-11 Score=102.98 Aligned_cols=151 Identities=18% Similarity=0.233 Sum_probs=113.1
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v 257 (362)
...++|||||.|.....+...+ ..+++-+|.|-.|++.++..- .+.-.+....+|-+.++|.++++|+|+++..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q-----dp~i~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ-----DPSIETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC-----CCceEEEEEecchhcccccccchhhhhhhhh
Confidence 4589999999999999999887 468999999999999998731 1234567788999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEE
Q 018003 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVN 336 (362)
Q Consensus 258 l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v 336 (362)
+|+..|...-+.++...|||+|.|+.+....+......--++... ....-...++...+....++..+|.++||.-.
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAe--lER~GGiSphiSPf~qvrDiG~LL~rAGF~m~ 223 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAE--LEREGGISPHISPFTQVRDIGNLLTRAGFSML 223 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHH--HHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence 999999999999999999999999988776653221111111110 00000233312344456789999999999543
No 132
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=99.22 E-value=2.6e-10 Score=97.88 Aligned_cols=147 Identities=12% Similarity=0.108 Sum_probs=112.6
Q ss_pred HHHHHHHHhhcCCCC----CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003 163 EKEFELMKGYLKPVL----GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~----~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 238 (362)
...++++........ ..++|||||=+..+... ..+. -.|+.||+++. .-.+.+.|
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~-fdvt~IDLns~------------------~~~I~qqD 91 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGW-FDVTRIDLNSQ------------------HPGILQQD 91 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCc-eeeEEeecCCC------------------CCCceeec
Confidence 344455555443322 35999999986554432 2232 36999999762 34468899
Q ss_pred CCCCCCC---CCcceEEEecccccCCCCHH---HHHHHHHhhccCCcE-----EEEEEEccCCCCcchhhhHHHHHhhhh
Q 018003 239 ISRLPFA---SSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGV-----FVGTTYIVDGPFNLIPFSRLLRQVCFL 307 (362)
Q Consensus 239 ~~~~p~~---~~~fD~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~-----li~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (362)
+.+.|.+ ++.||+|.++-||.++|+|. .+++.+.+.|+|+|. |+++.|..-
T Consensus 92 Fm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C------------------ 153 (219)
T PF11968_consen 92 FMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC------------------ 153 (219)
T ss_pred cccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH------------------
Confidence 9888764 67899999999999999996 799999999999999 999887531
Q ss_pred cccccccccccCCHHHHHHHHHHCCCEEEEEEEeceeEEEEeeCcc
Q 018003 308 DLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPS 353 (362)
Q Consensus 308 ~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~kp~ 353 (362)
.. +.+|++.+.|..+++..||..++.........++.++..
T Consensus 154 ----v~-NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~~ 194 (219)
T PF11968_consen 154 ----VT-NSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRKSG 194 (219)
T ss_pred ----hh-cccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEeecC
Confidence 01 578999999999999999999999888888877777653
No 133
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=2.3e-10 Score=97.15 Aligned_cols=109 Identities=10% Similarity=0.116 Sum_probs=83.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
+.+.+.+...++.+|||+|||+|.++..+++++ .+++++|+++.+++.+++++... .++.++.+|+.++++++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~~-----~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAAA-----DNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhccC-----CCEEEEECchhcCCccc
Confidence 456666776778899999999999999999885 49999999999999999887542 58999999999988777
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhh--ccCCcEEEEEE
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRV--LRPGGVFVGTT 285 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~--LkpgG~li~~~ 285 (362)
..||.|+++--. |+. ...+..+.+. +.++|.+++..
T Consensus 76 ~~~d~vi~n~Py-~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 76 LQPYKVVGNLPY-NIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cCCCEEEECCCc-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 779999987543 332 2334444432 34778777654
No 134
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=6.5e-10 Score=101.66 Aligned_cols=124 Identities=23% Similarity=0.306 Sum_probs=93.5
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc--
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA-- 257 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v-- 257 (362)
+|||+|||+|..+..++...++.+|+|+|+|+.+++.|++++..+ + ..++.++.+|...- . .++||+|+++--
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-~--l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-G--LVRVLVVQSDLFEP-L-RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-C--CccEEEEeeecccc-c-CCceeEEEeCCCCC
Confidence 799999999999999999998889999999999999999999887 1 15667777775432 2 348999999821
Q ss_pred ---ccCC------CCH--------------HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccc
Q 018003 258 ---IHCW------SSP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGF 314 (362)
Q Consensus 258 ---l~h~------~d~--------------~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (362)
..+. .+| ..++.++.+.|+|||.+++..-
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---------------------------- 239 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---------------------------- 239 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC----------------------------
Confidence 1111 122 2568888899999998887642
Q ss_pred ccccCCHHHHHHHHHHCC-CEEEEEE
Q 018003 315 SIPVLGFDDLKRIFRQFQ-LVVNLKL 339 (362)
Q Consensus 315 ~~~~~s~~~l~~ll~~~G-f~~v~~~ 339 (362)
+...+.+.+++.+.| |..+...
T Consensus 240 ---~~q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 240 ---LTQGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred ---CCcHHHHHHHHHhcCCceEEEEE
Confidence 223567899999999 6554443
No 135
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.21 E-value=8.2e-11 Score=109.70 Aligned_cols=167 Identities=20% Similarity=0.186 Sum_probs=102.8
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCC-------CCCCEEEEEecCCCCC----CC
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-------PKENFLLVRADISRLP----FA 245 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-------~~~~~~~~~~d~~~~p----~~ 245 (362)
++.+|||+|||.|.-+.-+...+ ...++|+|++...++.|+++....... ..-...++.+|..... +.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 67899999999888776666654 359999999999999999998321100 0134567888875421 23
Q ss_pred --CCcceEEEecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCCCC-------------cchhhhHH------
Q 018003 246 --SSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPF-------------NLIPFSRL------ 300 (362)
Q Consensus 246 --~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~~~-------------~~~~~~~~------ 300 (362)
...||+|.|.++||+.-.. ..+|+++...|+|||+|+.++|..+... .+..-+..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 3599999999999998433 3689999999999999999999763110 00000000
Q ss_pred -HHHhhhhcc--c----ccccccccCCHHHHHHHHHHCCCEEEEEEEecee
Q 018003 301 -LRQVCFLDL--K----IVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHI 344 (362)
Q Consensus 301 -~~~~~~~~~--~----~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~ 344 (362)
....+...+ . ...-.......+.+.+++++.||+.+....+..+
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef 271 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHEF 271 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHHH
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHHH
Confidence 000000000 0 0010224456889999999999999987665443
No 136
>PRK04457 spermidine synthase; Provisional
Probab=99.21 E-value=1.3e-10 Score=105.45 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=84.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-CCCCCcceEEEec
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG 255 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~~ 255 (362)
++.+|||||||+|.++..+++..+..+++++|+++++++.|++.+... ...+++.++.+|+.+. .-..++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~--~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP--ENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC--CCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 467899999999999999998888889999999999999999987543 1246899999998543 2223679999975
Q ss_pred ccc-cCCC---CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 256 AAI-HCWS---SPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 256 ~vl-~h~~---d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
..- ...+ ....+++++.+.|+|||++++..+.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 311 1111 1258999999999999999986544
No 137
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.3e-10 Score=111.94 Aligned_cols=117 Identities=25% Similarity=0.237 Sum_probs=90.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-- 243 (362)
..+...+...++.+|||+|||+|..+..+++.. +.+.++++|+++.+++.+++++++. +..++.++++|+..++
T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~---g~~~v~~~~~D~~~~~~~ 316 (444)
T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL---GLTNIETKALDARKVHEK 316 (444)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCCcccccch
Confidence 445556677778999999999999999988863 4569999999999999999998876 2346999999997753
Q ss_pred CCCCcceEEEecc------cccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003 244 FASSSIDAVHAGA------AIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 244 ~~~~~fD~V~~~~------vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
++ ++||+|++.. ++.+-++. ..+|+++.++|||||.++.++-.
T Consensus 317 ~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 317 FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred hc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 33 6899999752 22221211 25799999999999999987644
No 138
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=3.4e-10 Score=110.72 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=90.4
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
.....+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.+++++++. +..++.++++|+..++ ++
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~---g~~~v~~~~~Da~~~~-~~ 316 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL---GITIIETIEGDARSFS-PE 316 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh---CCCeEEEEeCcccccc-cC
Confidence 34455666778999999999999988887653 2358999999999999999998876 2347899999998765 45
Q ss_pred CcceEEEec------ccccCCC------C----------HHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 247 SSIDAVHAG------AAIHCWS------S----------PSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 247 ~~fD~V~~~------~vl~h~~------d----------~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
++||+|++. .++..-+ + ...+|.++.++|||||+++.+|-...
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 689999962 1221111 1 13589999999999999999886553
No 139
>PRK00811 spermidine synthase; Provisional
Probab=99.16 E-value=2.7e-10 Score=104.60 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=83.3
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCC--CCCCEEEEEecCCCC-CCCCCcceEEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--PKENFLLVRADISRL-PFASSSIDAVH 253 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~d~~~~-p~~~~~fD~V~ 253 (362)
.+.+||+||||+|..+..+.+.....+|+++|+++.+++.|++.+...... ..+++.++.+|+... ....++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 467999999999999999887644568999999999999999987643111 257899999998653 33457899999
Q ss_pred ecccccCCCC----HHHHHHHHHhhccCCcEEEEEE
Q 018003 254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 254 ~~~vl~h~~d----~~~~l~~i~r~LkpgG~li~~~ 285 (362)
+...-.+.+. ...+++.+.+.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 8643222221 1467899999999999998753
No 140
>PLN02672 methionine S-methyltransferase
Probab=99.14 E-value=1.2e-09 Score=114.84 Aligned_cols=135 Identities=15% Similarity=0.098 Sum_probs=97.8
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCC-------------CCCCCEEEEEecCCCCCC
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------FPKENFLLVRADISRLPF 244 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~d~~~~p~ 244 (362)
+.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|+++++.+.- ....++.++++|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999988777999999999999999999876410 112479999999866431
Q ss_pred C-CCcceEEEeccc--------------ccCC--------------------CCH----HHHHHHHHhhccCCcEEEEEE
Q 018003 245 A-SSSIDAVHAGAA--------------IHCW--------------------SSP----STGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 245 ~-~~~fD~V~~~~v--------------l~h~--------------------~d~----~~~l~~i~r~LkpgG~li~~~ 285 (362)
. ...||+|+++-- .+|- .|- ..++.+..++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 236999998721 1111 111 366788888999999988764
Q ss_pred EccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH-HHHHHCCCEEEEEEEece
Q 018003 286 YIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK-RIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~-~ll~~~Gf~~v~~~~~g~ 343 (362)
-. -..+.+. +++++.||..++.+....
T Consensus 279 G~-------------------------------~q~~~v~~~l~~~~gf~~~~~~~~~~ 306 (1082)
T PLN02672 279 GG-------------------------------RPGQAVCERLFERRGFRITKLWQTKI 306 (1082)
T ss_pred Cc-------------------------------cHHHHHHHHHHHHCCCCeeEEeeehh
Confidence 21 1123566 588888888777766543
No 141
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.11 E-value=5e-10 Score=98.66 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=90.5
Q ss_pred HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCC-CEEEEEecCCCC---CCC
Q 018003 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRL---PFA 245 (362)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~d~~~~---p~~ 245 (362)
...++......+||||||.|.++..+++..|+..++|||+....+..|.+++.+. .- |+.+++.|+..+ -++
T Consensus 41 ~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~----~l~Nlri~~~DA~~~l~~~~~ 116 (227)
T COG0220 41 SALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL----GLKNLRLLCGDAVEVLDYLIP 116 (227)
T ss_pred HHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc----CCCcEEEEcCCHHHHHHhcCC
Confidence 3344443335899999999999999999999999999999999999999998887 34 999999998653 245
Q ss_pred CCcceEEEecccccCCCCH-------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003 246 SSSIDAVHAGAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~-------------~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
+++.|-|..++ ||| ..+++.+.++|||||.|.+.|-.
T Consensus 117 ~~sl~~I~i~F-----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 117 DGSLDKIYINF-----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCeeEEEEEC-----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 66999999766 555 27899999999999999998844
No 142
>PHA03412 putative methyltransferase; Provisional
Probab=99.11 E-value=9.4e-10 Score=96.48 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=84.8
Q ss_pred ccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q 018003 155 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231 (362)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~ 231 (362)
..+.|++|......+... ...+.+|||+|||+|.++..++++. +..+++++|+++.+++.|+++ ..+
T Consensus 29 ~~GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n--------~~~ 98 (241)
T PHA03412 29 ELGAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI--------VPE 98 (241)
T ss_pred cCCccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh--------ccC
Confidence 346677887776665422 2236799999999999999888752 245899999999999999976 346
Q ss_pred EEEEEecCCCCCCCCCcceEEEecccccCC--CC----------HHHHHHHHHhhccCCcE
Q 018003 232 FLLVRADISRLPFASSSIDAVHAGAAIHCW--SS----------PSTGVAEISRVLRPGGV 280 (362)
Q Consensus 232 ~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~--~d----------~~~~l~~i~r~LkpgG~ 280 (362)
+.++.+|+...++ +++||+|+++--..-. .+ ...+++.+.+++++|+.
T Consensus 99 ~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 99 ATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 8899999987664 5689999998443211 11 34688888887777765
No 143
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.11 E-value=2.1e-10 Score=102.89 Aligned_cols=112 Identities=26% Similarity=0.390 Sum_probs=88.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC---CCCEEEEEecCCC------CCCCCC
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISR------LPFASS 247 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~~~~~~~~~d~~~------~p~~~~ 247 (362)
++..++|+|||.|.-+.-+-+.+. ..++|+|+++..+++|+++.+...+.. .-.+.|+.+|-.. +++++.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 477899999999988877777764 589999999999999999887652110 1136788888643 455666
Q ss_pred cceEEEecccccCCC----CHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 248 SIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 248 ~fD~V~~~~vl~h~~----d~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
+||+|-|.+++|+-- ....+|+++.+.|||||+++.+.|+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 799999999998753 234789999999999999999998763
No 144
>PRK01581 speE spermidine synthase; Validated
Probab=99.11 E-value=8.1e-10 Score=102.82 Aligned_cols=107 Identities=20% Similarity=0.139 Sum_probs=79.9
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH--Hhhc--CCCCCCCEEEEEecCCCC-CCCCCcceE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQE--SNFPKENFLLVRADISRL-PFASSSIDA 251 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~--~~~~~~~~~~~~~d~~~~-p~~~~~fD~ 251 (362)
...+||++|||+|..+..+.+..+..+++++|+++++++.|++. +... .....++++++.+|+... +...+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 35699999999999999888876557999999999999999962 1110 011257999999998763 334568999
Q ss_pred EEecccccCCCC------HHHHHHHHHhhccCCcEEEEE
Q 018003 252 VHAGAAIHCWSS------PSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 252 V~~~~vl~h~~d------~~~~l~~i~r~LkpgG~li~~ 284 (362)
|++... ..... -..+++.+++.|+|||++++.
T Consensus 230 IIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 230 IIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998732 11100 136899999999999998876
No 145
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.08 E-value=1.3e-09 Score=112.20 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=82.3
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCCCcceEEEec
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAG 255 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD~V~~~ 255 (362)
++.+|||+|||+|.++..++..|. .+|+++|+|+.+++.|+++++.+ +....++.++++|+.+.. -..++||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~n-g~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALN-GLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHh-CCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 378999999999999999998763 47999999999999999999876 222247999999985531 114689999985
Q ss_pred cc-----------ccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 256 AA-----------IHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 256 ~v-----------l~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
-- .....+...++..+.++|+|||.+++.+
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 21 1112234567888999999999998764
No 146
>PRK03612 spermidine synthase; Provisional
Probab=99.08 E-value=1e-09 Score=109.18 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=81.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH--HhhcC--CCCCCCEEEEEecCCCC-CCCCCcceE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQES--NFPKENFLLVRADISRL-PFASSSIDA 251 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~~--~~~~~~~~~~~~d~~~~-p~~~~~fD~ 251 (362)
++++|||+|||+|..+..+.+.....+++++|+++++++.++++ +.... ....++++++.+|..+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 46799999999999999988764336999999999999999983 32210 11246899999998663 223468999
Q ss_pred EEecccccCCCCH-----HHHHHHHHhhccCCcEEEEEE
Q 018003 252 VHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 252 V~~~~vl~h~~d~-----~~~l~~i~r~LkpgG~li~~~ 285 (362)
|++...-...+.+ ..+++.+.+.|||||++++..
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 9997543322222 358899999999999998764
No 147
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.07 E-value=1.3e-09 Score=97.25 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=87.4
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C--
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-- 243 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-- 243 (362)
.+.......++++|||+|||+|.-+..++.. ...++++++|+++++++.|+++++.. +...+++++.+|+.+. +
T Consensus 59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--GVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHH
Confidence 3333344445779999999999988877765 34579999999999999999999886 2346899999998653 2
Q ss_pred ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
.+.++||+|+...-= +.....+..+.++|+|||++++....+
T Consensus 137 ~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 137 LNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 124689999875321 234578999999999999988765443
No 148
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.07 E-value=1.6e-09 Score=103.76 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=78.8
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--C--CCCcceEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F--ASSSIDAV 252 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~--~~~~fD~V 252 (362)
++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++++.+ +....++.++++|+.... + ..++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~N-gl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELN-KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc-CCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 47899999999999987766544 358999999999999999999876 221247899999986641 1 24589999
Q ss_pred EecccccCC---------CCHHHHHHHHHhhccCCcEEEEEE
Q 018003 253 HAGAAIHCW---------SSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 253 ~~~~vl~h~---------~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
++.----.- .+...+++...++|+|||.++..+
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 987331100 112345566789999999999764
No 149
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=99.05 E-value=2.4e-09 Score=96.17 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=113.1
Q ss_pred HHHHHhhcC----CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC----------------
Q 018003 166 FELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------- 225 (362)
Q Consensus 166 ~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------------- 225 (362)
++.|.+..+ .....+||--|||.|+++..++..|. .+.|.|.|--|+-..+-.+....
T Consensus 41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn 118 (270)
T PF07942_consen 41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN 118 (270)
T ss_pred HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence 344454444 23457899999999999999999987 99999999998766554433200
Q ss_pred ---------------------CCCCCCEEEEEecCCCCCCCC---CcceEEEecccccCCCCHHHHHHHHHhhccCCcEE
Q 018003 226 ---------------------NFPKENFLLVRADISRLPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281 (362)
Q Consensus 226 ---------------------~~~~~~~~~~~~d~~~~p~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~l 281 (362)
.....++....||+..+...+ ++||+|+..+-|.-.++....|+.|.++|||||++
T Consensus 119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~W 198 (270)
T PF07942_consen 119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYW 198 (270)
T ss_pred CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEE
Confidence 012346788888887765444 79999999998888888999999999999999977
Q ss_pred EEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEE
Q 018003 282 VGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLF 340 (362)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~ 340 (362)
+ ...|++.+.... .......--++.+++..+.++.||+.++...
T Consensus 199 I----------N~GPLlyh~~~~-----~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 199 I----------NFGPLLYHFEPM-----SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred E----------ecCCccccCCCC-----CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 7 333333222111 0001022458899999999999998876544
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.02 E-value=5.7e-09 Score=102.10 Aligned_cols=114 Identities=20% Similarity=0.329 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR- 241 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~- 241 (362)
+...+.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++++.. ...++.++++|+.+
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~---~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRN---GLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHc---CCCceEEEEeChHHh
Confidence 34456667777766788999999999999999998864 9999999999999999988765 13579999999864
Q ss_pred ---CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 242 ---LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 242 ---~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
.++.+++||+|++.---. .....++.+.+ ++|+++++++.
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEe
Confidence 234456899999743211 12345655555 68999988875
No 151
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.01 E-value=7.6e-09 Score=89.73 Aligned_cols=121 Identities=11% Similarity=0.113 Sum_probs=85.3
Q ss_pred cHHHHHHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003 162 PEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (362)
Q Consensus 162 ~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 240 (362)
.+...+.+...+.. .++.+|||+|||+|.++..+..++. .+|+++|.++.+++.++++++.. + ..++.++++|+.
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~-~--~~~v~~~~~D~~ 112 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATL-K--AGNARVVNTNAL 112 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHh-C--CCcEEEEEchHH
Confidence 34444555555532 3577999999999999986555553 59999999999999999998876 1 347999999986
Q ss_pred CC-CCCCCcceEEEecccccCCCCHHHHHHHHHh--hccCCcEEEEEEEc
Q 018003 241 RL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI 287 (362)
Q Consensus 241 ~~-p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpgG~li~~~~~ 287 (362)
.. +...++||+|++.--... .-...+++.+.. +|+|+|+++++...
T Consensus 113 ~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 113 SFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 52 222456999998765221 223345555554 47899988887643
No 152
>PLN02366 spermidine synthase
Probab=99.00 E-value=3.4e-09 Score=98.00 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=81.9
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-C-CCCCcceEEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-P-FASSSIDAVH 253 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p-~~~~~fD~V~ 253 (362)
++.+||+||||.|..+..+++.....+++.+|+++.+++.|++.+.... +...++++++.+|+... . .+.++||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 4679999999999999999887444689999999999999999876421 12357899999997442 1 2256899999
Q ss_pred ecccccCCCC----HHHHHHHHHhhccCCcEEEEE
Q 018003 254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 254 ~~~vl~h~~d----~~~~l~~i~r~LkpgG~li~~ 284 (362)
+...-.+.+. -..+++.+.+.|+|||+++..
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 8543322221 136899999999999998764
No 153
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.00 E-value=9.6e-09 Score=96.00 Aligned_cols=113 Identities=12% Similarity=0.156 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~ 244 (362)
.++.+.+++...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|+++++.. ...+++++++|+..+..
T Consensus 161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~---~l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAEL---GLTNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHc---CCCceEEEEcCHHHHHH
Confidence 344555565544568999999999999999998764 9999999999999999998776 13579999999976532
Q ss_pred -CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 245 -ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 245 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
..+.||+|++.---. .-...++ ++...++|+++++++.
T Consensus 236 ~~~~~~D~Vv~dPPr~--G~~~~~~-~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 236 AQGEVPDLVLVNPPRR--GIGKELC-DYLSQMAPRFILYSSC 274 (315)
T ss_pred hcCCCCeEEEECCCCC--CccHHHH-HHHHHcCCCeEEEEEC
Confidence 235799999763210 0012233 3334467888777664
No 154
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.00 E-value=5.1e-09 Score=95.68 Aligned_cols=108 Identities=13% Similarity=0.148 Sum_probs=81.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCCcceEEEe
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA 254 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~ 254 (362)
.+.+||+||||+|.++..+.+.....+++++|+++++++.+++.+.... ....++++++.+|.... ....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3459999999999999988887655689999999999999999875431 11246788888887442 222468999998
Q ss_pred cccccCCCC----HHHHHHHHHhhccCCcEEEEE
Q 018003 255 GAAIHCWSS----PSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 255 ~~vl~h~~d----~~~~l~~i~r~LkpgG~li~~ 284 (362)
...-..-+. ...+++.+.+.|+|||++++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 654221111 247889999999999999976
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.00 E-value=2.7e-09 Score=92.21 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=96.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCC-----------------------------
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF----------------------------- 227 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----------------------------- 227 (362)
.+..+|||||..|.++..+++......+.|+|+++..++.|++.++.....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 367899999999999999999865568999999999999999976532100
Q ss_pred ----------CCCCEEEEEecCCCCCCCCCcceEEEeccccc--CC--CC--HHHHHHHHHhhccCCcEEEEEEEccCCC
Q 018003 228 ----------PKENFLLVRADISRLPFASSSIDAVHAGAAIH--CW--SS--PSTGVAEISRVLRPGGVFVGTTYIVDGP 291 (362)
Q Consensus 228 ----------~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~--h~--~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~ 291 (362)
...|..+...|+. .+....||+|+|.-+-. |+ .| ...+++.+.++|.|||+|++.-..++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWk-- 213 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWK-- 213 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchH--
Confidence 0011112222222 23456799999875532 22 12 45899999999999999998644332
Q ss_pred CcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHC--CCEEEE
Q 018003 292 FNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQF--QLVVNL 337 (362)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~--Gf~~v~ 337 (362)
.+....+..-. ...+. ....+.++.+..++.+. ||+.+.
T Consensus 214 ----sY~kaar~~e~--~~~ny-~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 214 ----SYKKAARRSEK--LAANY-FKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred ----HHHHHHHHHHH--hhcCc-cceecCHHHHHhhhhhhhhheeeec
Confidence 22222111100 01111 34557899999999887 665443
No 156
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.95 E-value=8.1e-09 Score=94.66 Aligned_cols=151 Identities=10% Similarity=0.102 Sum_probs=108.7
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccc
Q 018003 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (362)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl 258 (362)
...+|+|.|.|..+..+....+ ++-|++++...+..++..+. +.+..+.+|..+- .|. -|+|++.++|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P~--~daI~mkWiL 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TPK--GDAIWMKWIL 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CCC--cCeEEEEeec
Confidence 6889999999999999999777 79999999888887777532 4588888888654 333 4699999999
Q ss_pred cCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcch---hhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCC
Q 018003 259 HCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLI---PFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQL 333 (362)
Q Consensus 259 ~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf 333 (362)
|||.|-. ++|+++...|+|||.+++.+...+...... .......+.++.. ... ...-.+.++++.++.++||
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~-~~~--~Gkert~~e~q~l~~~~gF 323 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLT-QTS--GGKERTLKEFQALLPEEGF 323 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHH-Hhc--cceeccHHHHHhcchhhcC
Confidence 9998765 899999999999999999887544211111 1111111111100 011 2344688999999999999
Q ss_pred EEEEEEEecee
Q 018003 334 VVNLKLFYGHI 344 (362)
Q Consensus 334 ~~v~~~~~g~~ 344 (362)
.+......+..
T Consensus 324 ~~~~~~~~~~~ 334 (342)
T KOG3178|consen 324 PVCMVALTAYS 334 (342)
T ss_pred ceeEEEeccCc
Confidence 88776654443
No 157
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.95 E-value=1.3e-08 Score=99.31 Aligned_cols=113 Identities=17% Similarity=0.210 Sum_probs=84.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL- 242 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~- 242 (362)
...+.+.+.+...++.+|||+|||+|.++..+++... +|+|+|+++.+++.|+++++.. ...++.++.+|+.+.
T Consensus 279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~---~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELN---GIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHh---CCCceEEEeCCHHHHH
Confidence 3455666666666678999999999999999998765 8999999999999999998765 246899999998652
Q ss_pred ---CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003 243 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 243 ---p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~ 284 (362)
++.+++||+|++.--= ..-...+++.+.+ ++|++.++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEc
Confidence 2335679999964321 1112455666554 8898877765
No 158
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.94 E-value=2.6e-08 Score=81.44 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=106.1
Q ss_pred ccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEE
Q 018003 155 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 233 (362)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~ 233 (362)
..+-.+......+.+...+.+..|.-|||+|.|||-+++++..+| +...++.+|.|++......+. .+.+.
T Consensus 26 VGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~ 97 (194)
T COG3963 26 VGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVN 97 (194)
T ss_pred eeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCcc
Confidence 445567778888999999999999999999999999999999986 456899999999999998886 56777
Q ss_pred EEEecCCCCC-----CCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEcc
Q 018003 234 LVRADISRLP-----FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 234 ~~~~d~~~~p-----~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
++.+|+..+. +.+..||.|++.--+-.++-- .+.|+.+...|.+||.++..++..
T Consensus 98 ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 98 IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 9999987764 556789999998777666543 478999999999999999888763
No 159
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=1.5e-08 Score=84.97 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=65.5
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEE
Q 018003 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~ 253 (362)
+.-.|.+|+|+|||||.++...+-.|+ ..|+|+|+++++++.++++..+. ..++.++++|+.+.. +.+|.|+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhcC---CccceEE
Confidence 444677899999999999999888885 58999999999999999998876 678999999998874 6689888
Q ss_pred eccc
Q 018003 254 AGAA 257 (362)
Q Consensus 254 ~~~v 257 (362)
++--
T Consensus 114 mNPP 117 (198)
T COG2263 114 MNPP 117 (198)
T ss_pred ECCC
Confidence 8643
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.90 E-value=1.3e-08 Score=88.76 Aligned_cols=116 Identities=15% Similarity=0.135 Sum_probs=89.6
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-ecCCCC-C-
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRL-P- 243 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~-p- 243 (362)
.+.-.+....+++|||||.+.|.-+.+++..-+ +++++.+|.++++.+.|++++++. +...++.++. +|..+. .
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a--g~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA--GVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc--CCcceEEEEecCcHHHHHHh
Confidence 333333444578999999999999999999876 789999999999999999999987 3345588888 466332 2
Q ss_pred CCCCcceEEEecccccCCC-CHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 244 FASSSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~-d~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
...++||+|+.- +-+ +-..++..+.++|+|||++++-.....
T Consensus 128 ~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 128 LLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred ccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 346899999953 332 345889999999999999998655544
No 161
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.90 E-value=6.9e-09 Score=89.26 Aligned_cols=147 Identities=15% Similarity=0.101 Sum_probs=102.7
Q ss_pred HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCC
Q 018003 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASS 247 (362)
Q Consensus 170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~ 247 (362)
....++..|.+|||...|-|+++....++|. ..|+-+|.+++.++.|.-+-=.. +....++.++.+|+.+. .|.+.
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr-~l~~~~i~iilGD~~e~V~~~~D~ 204 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSR-ELFEIAIKIILGDAYEVVKDFDDE 204 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCc-cccccccEEecccHHHHHhcCCcc
Confidence 3445566799999999999999999999984 58999999999998886531000 11234689999998664 47899
Q ss_pred cceEEEeccc-ccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003 248 SIDAVHAGAA-IHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL 324 (362)
Q Consensus 248 ~fD~V~~~~v-l~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 324 (362)
+||+|+..-- +.+-. --..+.+|+.|+|||||.++-.+-++... +. ..--+..+
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r-------------------yr----G~d~~~gV 261 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR-------------------YR----GLDLPKGV 261 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc-------------------cc----cCChhHHH
Confidence 9999984210 00000 11378999999999999999766543210 00 11124578
Q ss_pred HHHHHHCCCEEEEEEEe
Q 018003 325 KRIFRQFQLVVNLKLFY 341 (362)
Q Consensus 325 ~~ll~~~Gf~~v~~~~~ 341 (362)
.+.|+++||++++....
T Consensus 262 a~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 262 AERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHHhcCceeeeeehh
Confidence 88999999998776544
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.89 E-value=1.5e-08 Score=92.00 Aligned_cols=87 Identities=13% Similarity=0.214 Sum_probs=72.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
....+.+.+.+...++.+|||||||+|.++..+++.+. +++|+|+++.+++.+++++... .++.++++|+..+
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~~-----~~v~ii~~D~~~~ 87 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIAA-----GNVEIIEGDALKV 87 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhccC-----CCEEEEEeccccC
Confidence 44456777777777789999999999999999999864 8999999999999999876542 5899999999988
Q ss_pred CCCCCcceEEEecccc
Q 018003 243 PFASSSIDAVHAGAAI 258 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl 258 (362)
+++ .||.|+++--.
T Consensus 88 ~~~--~~d~Vv~NlPy 101 (258)
T PRK14896 88 DLP--EFNKVVSNLPY 101 (258)
T ss_pred Cch--hceEEEEcCCc
Confidence 764 48999987553
No 163
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.89 E-value=1e-08 Score=93.82 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=71.1
Q ss_pred cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (362)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 241 (362)
.....+.+.+.+...++.+|||+|||+|.++..+++.+. +++|+|+++.|++.+++++. ..++.++++|+..
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~ 98 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALK 98 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhc
Confidence 345567777777777788999999999999999999976 99999999999999988653 2589999999998
Q ss_pred CCCCCCcceEEEecc
Q 018003 242 LPFASSSIDAVHAGA 256 (362)
Q Consensus 242 ~p~~~~~fD~V~~~~ 256 (362)
+++++-.+|.|+++-
T Consensus 99 ~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 99 VDLSELQPLKVVANL 113 (272)
T ss_pred CCHHHcCcceEEEeC
Confidence 876542257887764
No 164
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.88 E-value=1.7e-09 Score=103.30 Aligned_cols=116 Identities=24% Similarity=0.370 Sum_probs=83.1
Q ss_pred CcHHHHHHHHhhcCC--C--CCCeEEEEcCccchHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHhhcCCCCCCCEE
Q 018003 161 GPEKEFELMKGYLKP--V--LGGNIIDASCGSGLFSRIFAKSGLFSLVVAL---DYSENMLKQCYEFVQQESNFPKENFL 233 (362)
Q Consensus 161 ~~~~~~~~l~~~l~~--~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~ 233 (362)
+....++.|.+.+.. . .-..+||+|||+|.|+.++.+++- .+..+ |..+.+++.|.++ .+.
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR----------Gvp 164 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER----------GVP 164 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc----------Ccc
Confidence 335566677777654 2 224689999999999999999863 33333 3444566666654 233
Q ss_pred EEEec--CCCCCCCCCcceEEEecccccCCC-CHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 234 LVRAD--ISRLPFASSSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 234 ~~~~d--~~~~p~~~~~fD~V~~~~vl~h~~-d~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
...+- ..++||++++||+|.|..++-.+. +-..+|-++.|+|+|||+++++.|-.
T Consensus 165 a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 165 AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 33333 468999999999999999986553 33568999999999999999987643
No 165
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=2.6e-08 Score=87.73 Aligned_cols=124 Identities=19% Similarity=0.141 Sum_probs=89.0
Q ss_pred HHHHHHHHhhcCCC---CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC
Q 018003 163 EKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (362)
Q Consensus 163 ~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 239 (362)
++..+.+.+.+... .+..|||+|||+|..+..+....+.+.++++|.|+.++..|.+++++. ....++.++.-++
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~--~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL--KLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH--hhcCceEEEeccc
Confidence 44455555555432 345799999999999999998888899999999999999999998876 3456677765444
Q ss_pred CC-----CCCCCCcceEEEecccc-cC-------------------------CCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 240 SR-----LPFASSSIDAVHAGAAI-HC-------------------------WSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 240 ~~-----~p~~~~~fD~V~~~~vl-~h-------------------------~~d~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
+. .+...+++|+++++--- -+ ......++.-+.|+|+|||.+.+..-..
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 22 34557899999998321 00 0011244667789999999999987644
No 166
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.87 E-value=2.2e-08 Score=85.25 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C--C-CCCCcce
Q 018003 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L--P-FASSSID 250 (362)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~--p-~~~~~fD 250 (362)
..++.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.+......++.+...|-.+ . . ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3457899999999999999998884446999999999 99999998887621124566666665433 1 1 2346899
Q ss_pred EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
+|++..+++.-.....+++.+.++|+|+|.+++....+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999987777899999999999999988777654
No 167
>PLN02476 O-methyltransferase
Probab=98.86 E-value=3.2e-08 Score=89.72 Aligned_cols=115 Identities=16% Similarity=0.068 Sum_probs=87.5
Q ss_pred HHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CC-C-
Q 018003 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP-F- 244 (362)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p-~- 244 (362)
+...+...++++|||||+++|..+.+++... +++.++.+|.+++..+.|++.+++. +...+++++.+|+.+ ++ +
T Consensus 110 L~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--Gl~~~I~li~GdA~e~L~~l~ 187 (278)
T PLN02476 110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--GVSHKVNVKHGLAAESLKSMI 187 (278)
T ss_pred HHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHH
Confidence 3333444457899999999999999998753 3568999999999999999999887 334689999999854 22 1
Q ss_pred ---CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 245 ---ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 245 ---~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
..++||+|+.-.- =.+....++.+.++|+|||++++-...+
T Consensus 188 ~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 188 QNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred hcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 1368999996542 0234578899999999999988764443
No 168
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.85 E-value=1.7e-07 Score=80.13 Aligned_cols=112 Identities=20% Similarity=0.227 Sum_probs=81.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCE---------EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEE
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQESNFPKENFLL 234 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~ 234 (362)
.....+.......++..+||--||+|.++...+..+.+.. ++|.|+++.+++.|++++... +....+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~~~~i~~ 92 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GVEDYIDF 92 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T-CGGEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--ccCCceEE
Confidence 4445666666777788999999999999988877665545 899999999999999998876 23457899
Q ss_pred EEecCCCCCCCCCcceEEEecccccC-CCCH-------HHHHHHHHhhccC
Q 018003 235 VRADISRLPFASSSIDAVHAGAAIHC-WSSP-------STGVAEISRVLRP 277 (362)
Q Consensus 235 ~~~d~~~~p~~~~~fD~V~~~~vl~h-~~d~-------~~~l~~i~r~Lkp 277 (362)
.+.|+..+++.++++|+|+++--... +.+. ..+++++.++|++
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999988889999998744321 1111 2568889999999
No 169
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.84 E-value=2.9e-08 Score=94.85 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=81.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF- 244 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~- 244 (362)
+..+.+++...++.+|||+|||+|.++..++..+. +|+|+|+++.+++.|+++++.. ...++.++.+|+.+...
T Consensus 222 ~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~---~~~~~~~~~~d~~~~~~~ 296 (374)
T TIGR02085 222 YATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQML---GLDNLSFAALDSAKFATA 296 (374)
T ss_pred HHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHHHHHh
Confidence 34445555444567999999999999999987764 8999999999999999998776 13489999999865421
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
..++||+|++.---.. -...+++.+. .++|++.++++.
T Consensus 297 ~~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 297 QMSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred cCCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence 1246999987533111 1134555554 479999888875
No 170
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.82 E-value=2.9e-08 Score=90.62 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=78.6
Q ss_pred CCeEEEEcCccchHH----HHHHHhC----CCCEEEEEeCCHHHHHHHHHHH------hh------------cC------
Q 018003 178 GGNIIDASCGSGLFS----RIFAKSG----LFSLVVALDYSENMLKQCYEFV------QQ------------ES------ 225 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~----~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~------~~------------~~------ 225 (362)
.-+|+..||++|.=. ..+.+.. ...+++|+|+|+.+++.|++-. +. ..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999632 2333321 1358999999999999998742 00 00
Q ss_pred ----CCCCCCEEEEEecCCCCCCC-CCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEE
Q 018003 226 ----NFPKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 226 ----~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~ 284 (362)
......+.|.+.|+...+++ .+.||+|+|.+++.|+.+ ...+++.+.+.|+|||+|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 00124568888888775543 578999999999999965 458999999999999998864
No 171
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.82 E-value=3.6e-07 Score=84.77 Aligned_cols=154 Identities=10% Similarity=0.086 Sum_probs=93.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-ecCCCCC----CCCCcceE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLP----FASSSIDA 251 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~p----~~~~~fD~ 251 (362)
.+.++||||||+|.....++.+.+..+++|+|+++.+++.|+++++.+. ....++.+.. .|...+. .+.+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 4679999999999888877777666799999999999999999988751 1234677754 3332221 23568999
Q ss_pred EEecccccCCCCH-----HHHHHHH----------------HhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccc
Q 018003 252 VHAGAAIHCWSSP-----STGVAEI----------------SRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLK 310 (362)
Q Consensus 252 V~~~~vl~h~~d~-----~~~l~~i----------------~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (362)
|+|+--++--.+- ..-.+.+ .+++.+||.+-+..+.... . . .+..... .
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~e-----S-~-~~~~~~g---w 262 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEE-----S-K-AFAKQVL---W 262 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHH-----H-H-HHHhhCc---E
Confidence 9999654422111 1112222 2445567776554433210 0 1 1111110 1
Q ss_pred ccccccccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003 311 IVGFSIPVLGFDDLKRIFRQFQLVVNLKLFY 341 (362)
Q Consensus 311 ~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~ 341 (362)
+...-...-+.+.+.+.|++.|...++...+
T Consensus 263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1111223347889999999999966666554
No 172
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.81 E-value=1.8e-08 Score=99.73 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=85.5
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEEe
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA 254 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~~ 254 (362)
.+..+||||||.|.++..++...|+..++|+|++...+..+.++.... ...|+.++..|+..+ -++++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~---~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ---NITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 456899999999999999999999999999999999988888876654 256888888887533 266888999997
Q ss_pred cccccCCCCH--------HHHHHHHHhhccCCcEEEEEEE
Q 018003 255 GAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 255 ~~vl~h~~d~--------~~~l~~i~r~LkpgG~li~~~~ 286 (362)
++-=-|.... ..+++.+.++|||||.+.+.|-
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 6632221111 2789999999999999998873
No 173
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.80 E-value=2.1e-08 Score=86.68 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=69.1
Q ss_pred CCCeEEEEcCccchH----HHHHHHh-----CCCCEEEEEeCCHHHHHHHHHHH------hh------------cCCC--
Q 018003 177 LGGNIIDASCGSGLF----SRIFAKS-----GLFSLVVALDYSENMLKQCYEFV------QQ------------ESNF-- 227 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~----~~~l~~~-----~~~~~v~gvD~s~~~~~~a~~~~------~~------------~~~~-- 227 (362)
..-+|+.+||++|.= +..+.+. +...+++|+|+|+.+++.|++-. +. ..+.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 456899999999963 2333331 22469999999999999998621 00 0000
Q ss_pred -----CCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEE
Q 018003 228 -----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 228 -----~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~ 284 (362)
....+.|.+.|+.+.+...+.||+|+|.+||-++... ..+++.+.+.|+|||.|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 1246889999998844456789999999999999655 48999999999999999975
No 174
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.80 E-value=1e-07 Score=86.38 Aligned_cols=86 Identities=12% Similarity=0.184 Sum_probs=70.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
....+.+.+.+...++.+|||+|||+|.++..+++.++ .++++|+++.+++.+++++.. ..++.++.+|+..+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcC
Confidence 44456777777777788999999999999999999986 799999999999999987643 36899999999988
Q ss_pred CCCCCcce---EEEeccc
Q 018003 243 PFASSSID---AVHAGAA 257 (362)
Q Consensus 243 p~~~~~fD---~V~~~~v 257 (362)
+++ .+| +|+++-.
T Consensus 88 ~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 88 DLP--DFPKQLKVVSNLP 103 (253)
T ss_pred Chh--HcCCcceEEEcCC
Confidence 765 466 6665543
No 175
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.80 E-value=1.2e-07 Score=92.11 Aligned_cols=113 Identities=15% Similarity=0.219 Sum_probs=77.8
Q ss_pred HHHHhhcCCC----CCCeEEEEcCccchHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003 167 ELMKGYLKPV----LGGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238 (362)
Q Consensus 167 ~~l~~~l~~~----~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 238 (362)
+.+.+..... .+..|||||||+|.++...++.+ ...+|+++|-++.+....++++..+ +...+|+++.+|
T Consensus 172 ~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w~~~V~vi~~d 249 (448)
T PF05185_consen 172 EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GWGDKVTVIHGD 249 (448)
T ss_dssp HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TTTTTEEEEES-
T ss_pred HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CCCCeEEEEeCc
Confidence 3444444433 25689999999999987776654 2459999999998887777765544 345789999999
Q ss_pred CCCCCCCCCcceEEEeccc--ccCCCCHHHHHHHHHhhccCCcEEE
Q 018003 239 ISRLPFASSSIDAVHAGAA--IHCWSSPSTGVAEISRVLRPGGVFV 282 (362)
Q Consensus 239 ~~~~p~~~~~fD~V~~~~v--l~h~~d~~~~l~~i~r~LkpgG~li 282 (362)
++++..+. ++|+|++-.. +-.-.--...|....|.|||||+++
T Consensus 250 ~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 250 MREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 99987654 8999997432 1111122356889999999999876
No 176
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.78 E-value=2.9e-08 Score=86.49 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=81.6
Q ss_pred CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-----CCCCcc
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FASSSI 249 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-----~~~~~f 249 (362)
..++|||||+++|.-+.++++..+ +++++.+|++++..+.|++.+++. +...+++++.+|+.+. + -..+.|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a--g~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA--GLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT--TGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc--CCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 356999999999999999998743 679999999999999999998876 2346899999998542 2 113579
Q ss_pred eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
|+|+.-..= .+....+..+.++|+|||++++-.
T Consensus 123 D~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 123 DFVFIDADK---RNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred eEEEEcccc---cchhhHHHHHhhhccCCeEEEEcc
Confidence 999975531 234578889999999999998754
No 177
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.78 E-value=1.6e-08 Score=95.11 Aligned_cols=110 Identities=27% Similarity=0.378 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
.++..++|+|||.|....++.... .+.++|+|.++..+..+....... ....+-.++.+|+...|+++..||.+.+.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~--~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA--YLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH--HhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 456789999999999999888765 368999999998888777654433 11334445889999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
.+..|.+++..+++|+.|++||||+++..++..
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 999999999999999999999999999877654
No 178
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.77 E-value=5.4e-08 Score=89.59 Aligned_cols=88 Identities=11% Similarity=0.140 Sum_probs=72.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
...++.+.+.+...++.+|||||||+|.++..+++.+. +++++|+++.+++.+++++... ....+++++.+|+...
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~--~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNS--PLASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhc--CCCCcEEEEECCHhhh
Confidence 44566777777777889999999999999999998865 8999999999999999988754 1146899999999876
Q ss_pred CCCCCcceEEEecc
Q 018003 243 PFASSSIDAVHAGA 256 (362)
Q Consensus 243 p~~~~~fD~V~~~~ 256 (362)
++ ..||.|+++-
T Consensus 98 ~~--~~~d~VvaNl 109 (294)
T PTZ00338 98 EF--PYFDVCVANV 109 (294)
T ss_pred cc--cccCEEEecC
Confidence 64 3689988763
No 179
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.77 E-value=9.6e-08 Score=91.11 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=80.1
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v 257 (362)
+.+|||++||+|.++..++.......|+++|+++.+++.++++++.+ ...++.+.++|+..+....+.||+|++.-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N---~~~~~~v~~~Da~~~l~~~~~fD~V~lDP- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN---GLENEKVFNKDANALLHEERKFDVVDIDP- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCceEEEhhhHHHHHhhcCCCCEEEECC-
Confidence 46899999999999999987654458999999999999999998776 13456789999865421145799999753
Q ss_pred ccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003 258 IHCWSSPSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 258 l~h~~d~~~~l~~i~r~LkpgG~li~~ 284 (362)
...+..++....+.+++||+++++
T Consensus 134 ---~Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 ---FGSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---CCCcHHHHHHHHHHhcCCCEEEEE
Confidence 145678888878889999999998
No 180
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.75 E-value=4.7e-08 Score=89.54 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
-.+++|||+|||+|.++...++.|. .+|+++|.|. +++.|++.+..+ +....++++.+.++++.+|.+++|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~-ia~~a~~iv~~N--~~~~ii~vi~gkvEdi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASS-IADFARKIVKDN--GLEDVITVIKGKVEDIELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechH-HHHHHHHHHHhc--CccceEEEeecceEEEecCccceeEEeeh
Confidence 4578999999999999999999994 7999999977 558888887775 44566999999998877777899999987
Q ss_pred ccccCC---CCHHHHHHHHHhhccCCcEEE
Q 018003 256 AAIHCW---SSPSTGVAEISRVLRPGGVFV 282 (362)
Q Consensus 256 ~vl~h~---~d~~~~l~~i~r~LkpgG~li 282 (362)
+.=+.+ .....+|-.=-+.|+|||.++
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 654333 123445555568999999886
No 181
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.72 E-value=9.5e-08 Score=88.02 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=93.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISR 241 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~ 241 (362)
-+..+.+.+.....+|..|||-=||||.++..+.-.|. .++|.|++..|++-|+.+++.. ......+... |+..
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y---~i~~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYY---GIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhh---CcCceeEEEeccccc
Confidence 34445566666677899999999999999998887776 9999999999999999998876 1345656666 9999
Q ss_pred CCCCCCcceEEEecccccC-----CCC----HHHHHHHHHhhccCCcEEEEEEE
Q 018003 242 LPFASSSIDAVHAGAAIHC-----WSS----PSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 242 ~p~~~~~fD~V~~~~vl~h-----~~d----~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+|+++.++|.|++---.-- ... ...+|+.+.++||+||++++..|
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 9999889999997422100 011 24789999999999999998876
No 182
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.1e-07 Score=80.75 Aligned_cols=111 Identities=22% Similarity=0.317 Sum_probs=84.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHhhcC-------CCCCCCEEEEEe
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLLVRA 237 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~ 237 (362)
+.|...+ .||.++||+|.|+|+++..++.. .++..++|||.-++.++.+++++.... .....++.++.+
T Consensus 74 e~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 74 EYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 3444444 45999999999999999887743 233356999999999999999987652 123457889999
Q ss_pred cCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 238 d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
|....-.....||.|.+... .....+++...|+|||.+++-.
T Consensus 152 Dgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEee
Confidence 99876656788999998754 2344677888999999998754
No 183
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=2.7e-08 Score=88.45 Aligned_cols=98 Identities=30% Similarity=0.463 Sum_probs=83.1
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v 257 (362)
+..++|+|||.|..+.. .|.+.++|.|++...+..+++. .......+|+..+|+.+.+||.+++..+
T Consensus 46 gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~---------~~~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS---------GGDNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred cceeeecccCCcccCcC----CCcceeeecchhhhhccccccC---------CCceeehhhhhcCCCCCCccccchhhhh
Confidence 77899999999986643 3667899999999999888872 2226888999999999999999999999
Q ss_pred ccCCCCH---HHHHHHHHhhccCCcEEEEEEEcc
Q 018003 258 IHCWSSP---STGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 258 l~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
+||+... ..+++++.|.|+|||...+..+..
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9999643 489999999999999988776654
No 184
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.67 E-value=1.5e-07 Score=84.31 Aligned_cols=115 Identities=11% Similarity=0.062 Sum_probs=86.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P- 243 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p- 243 (362)
..+...+...+.++|||||+++|.-+.+++.. .++++++.+|.+++..+.|++.++.. +...+++++.+|+.+. +
T Consensus 69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~~~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GVAHKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCCCceEEEeccHHHHHHH
Confidence 33333334444679999999999999988876 34679999999999999999999886 3357999999998552 2
Q ss_pred C-----CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 244 F-----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 244 ~-----~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+ ..++||+|+.-.-= ......++.+.++|+|||++++-..
T Consensus 147 l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 1 13689999965430 1234678888999999999887543
No 185
>PRK04148 hypothetical protein; Provisional
Probab=98.66 E-value=3.5e-07 Score=73.43 Aligned_cols=106 Identities=10% Similarity=0.112 Sum_probs=75.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~ 244 (362)
.+.+.+.+...++.++||||||+|. ++..|.+.|. +|+++|+++..++.+++. .+.++.+|+....+
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence 3556666666667899999999996 8888888876 999999999999988774 56889999987653
Q ss_pred C-CCcceEEEecccccCCCCHHHHHHHHHhhccC-CcEEEEEEEccC
Q 018003 245 A-SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP-GGVFVGTTYIVD 289 (362)
Q Consensus 245 ~-~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp-gG~li~~~~~~~ 289 (362)
. -+.+|+|.+.. -|..+..-+.++-+. |.-+++.....+
T Consensus 73 ~~y~~a~liysir------pp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 73 EIYKNAKLIYSIR------PPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred HHHhcCCEEEEeC------CCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 3 35689998754 333334444443333 445666555443
No 186
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=3.9e-06 Score=69.83 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=92.7
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceE
Q 018003 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~ 251 (362)
+.......+||||||+|..+..+++. +++..+.++|+++.+++...+.++.+ ..++..+++|+..-- ..++.|+
T Consensus 39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~l-~~~~VDv 113 (209)
T KOG3191|consen 39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSGL-RNESVDV 113 (209)
T ss_pred HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhhh-ccCCccE
Confidence 33333568999999999999888876 56778999999999999988888776 567889999986532 3488999
Q ss_pred EEeccccc-----CC------------CC----HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccc
Q 018003 252 VHAGAAIH-----CW------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLK 310 (362)
Q Consensus 252 V~~~~vl~-----h~------------~d----~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (362)
++.+--.. .+ .| ...++..+-.+|.|.|++++.....
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~---------------------- 171 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA---------------------- 171 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh----------------------
Confidence 99874321 11 01 1245666777888999999875432
Q ss_pred ccccccccCCHHHHHHHHHHCCCEE
Q 018003 311 IVGFSIPVLGFDDLKRIFRQFQLVV 335 (362)
Q Consensus 311 ~~~~~~~~~s~~~l~~ll~~~Gf~~ 335 (362)
-.++++-+.++..||..
T Consensus 172 --------N~p~ei~k~l~~~g~~~ 188 (209)
T KOG3191|consen 172 --------NKPKEILKILEKKGYGV 188 (209)
T ss_pred --------cCHHHHHHHHhhcccce
Confidence 12456777888999854
No 187
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=7.3e-07 Score=76.94 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=77.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-C-CCC-cceEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-ASS-SIDAV 252 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-~-~~~-~fD~V 252 (362)
.+.++||++||+|.++..++.+|. ..|+++|.++.+++.++++++.. ....++.++.+|+... . + ... .||+|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~--~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv 125 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL--KSGEQAEVVRNSALRALKFLAKKPTFDNVI 125 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh--CCcccEEEEehhHHHHHHHhhccCCCceEE
Confidence 478999999999999999999885 48999999999999999988776 1224688999998442 2 1 122 47888
Q ss_pred EecccccCCCCHHHHHHHHH--hhccCCcEEEEEEEc
Q 018003 253 HAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYI 287 (362)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~--r~LkpgG~li~~~~~ 287 (362)
+..--... .....++..+. .+|+++|.+++....
T Consensus 126 ~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 126 YLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 86443321 22334455443 478999988877543
No 188
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.60 E-value=2.4e-07 Score=82.88 Aligned_cols=148 Identities=16% Similarity=0.251 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC--------------CCCC-----------C
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPK-----------E 230 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--------------~~~~-----------~ 230 (362)
.+|.++||||||+-..-..-+ .-...+++..|.++..++..++-+++.. .+.. .
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa-~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSA-CEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTG-GGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhH-HHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 357799999999855432222 2223489999999988887666554431 0000 1
Q ss_pred CE-EEEEecCCCCC-CCC-----CcceEEEecccccCCC-CHH---HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhH
Q 018003 231 NF-LLVRADISRLP-FAS-----SSIDAVHAGAAIHCWS-SPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 299 (362)
Q Consensus 231 ~~-~~~~~d~~~~p-~~~-----~~fD~V~~~~vl~h~~-d~~---~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~ 299 (362)
.+ .++.+|+.+.+ +.. +.||+|++..+|+... |+. .+++++.++|||||.|++.............
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~--- 210 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG--- 210 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT---
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC---
Confidence 12 36778887643 322 2599999999998874 553 7899999999999999998765432111100
Q ss_pred HHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE
Q 018003 300 LLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL 339 (362)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~ 339 (362)
. .++....+++.+++.|+++||.+.+..
T Consensus 211 ----------~--~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 211 ----------H--KFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ----------E--EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ----------E--ecccccCCHHHHHHHHHHcCCEEEecc
Confidence 0 114556899999999999999887665
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.60 E-value=6.3e-07 Score=76.63 Aligned_cols=98 Identities=18% Similarity=0.198 Sum_probs=80.7
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccccc
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~ 259 (362)
+++|||+|.|.-+..++-..|+.+++.+|....-+.+.+.-.... +..|+.++++.++. +....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL---GLSNVEVINGRAEE-PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH---T-SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh---CCCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence 899999999999999888888889999999998888777766655 35689999999988 445688999999886
Q ss_pred CCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 260 CWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 260 h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
.+...+++-+.+.|++||.+++.-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 567788999999999999998753
No 190
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.5e-06 Score=75.33 Aligned_cols=114 Identities=17% Similarity=0.271 Sum_probs=95.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~ 244 (362)
+.++...|...||.+|+|-|.|+|.++.++++. +|.++++-.|+.+...+.|++.+++. +...++.+.+-|+....|
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--gi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--GIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh--CCCcceEEEEeecccCCc
Confidence 578888899999999999999999999999987 67779999999999999999999987 467899999999976554
Q ss_pred --CCCcceEEEecccccCCCCHHHHHHHHHhhccCCc-EEEEEEE
Q 018003 245 --ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTY 286 (362)
Q Consensus 245 --~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG-~li~~~~ 286 (362)
.+..+|+|+. -++.|..++-.+.++||.+| ++....|
T Consensus 172 ~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 172 LIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred cccccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccH
Confidence 3567888875 35889999999999999887 4543333
No 191
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.60 E-value=1.1e-06 Score=77.68 Aligned_cols=144 Identities=14% Similarity=0.090 Sum_probs=83.0
Q ss_pred HHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEE-EEEecCCCCC--
Q 018003 168 LMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP-- 243 (362)
Q Consensus 168 ~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~d~~~~p-- 243 (362)
.+...+.. .++.++||+|||+|.++..+++.|. .+|+|+|+++.|+....+. ..++. +...|+..+.
T Consensus 65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~--------~~~v~~~~~~ni~~~~~~ 135 (228)
T TIGR00478 65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQ--------DERVKVLERTNIRYVTPA 135 (228)
T ss_pred HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhc--------CCCeeEeecCCcccCCHh
Confidence 34444433 4678999999999999999999863 5899999999888762221 23322 3333444322
Q ss_pred ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEE-EEEccCCCCcchhhhHHHHHhhh-hccccccccccc
Q 018003 244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG-TTYIVDGPFNLIPFSRLLRQVCF-LDLKIVGFSIPV 318 (362)
Q Consensus 244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 318 (362)
..-..+|+++++.. ..+..+.++|+| |.+++ .-|.++.. ..... ... ......+.
T Consensus 136 ~~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L~KPqFE~~----------~~~~~~~gi-v~~~~~~~ 195 (228)
T TIGR00478 136 DIFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTLLFKPQFEAG----------REKKNKKGV-VRDKEAIA 195 (228)
T ss_pred HcCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEEcChHhhhc----------HhhcCcCCe-ecCHHHHH
Confidence 12235776665544 248889999999 66554 33433211 00000 000 00001222
Q ss_pred CCHHHHHHHHHHCCCEEEEEEE
Q 018003 319 LGFDDLKRIFRQFQLVVNLKLF 340 (362)
Q Consensus 319 ~s~~~l~~ll~~~Gf~~v~~~~ 340 (362)
.-.+.+...+.+.||.+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 196 LALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred HHHHHHHHHHHcCCCeEeeEEE
Confidence 3345667778888998765543
No 192
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.60 E-value=2.7e-07 Score=79.85 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=76.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
.++.+.+. ++.+|+|+-||.|.|+..+++.+....|+++|++|.+++..++.++.+ ....++..+.+|...++. .
T Consensus 93 ~Ri~~~v~--~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN--kv~~~i~~~~~D~~~~~~-~ 167 (200)
T PF02475_consen 93 RRIANLVK--PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN--KVENRIEVINGDAREFLP-E 167 (200)
T ss_dssp HHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEES-GGG----T
T ss_pred HHHHhcCC--cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc--CCCCeEEEEcCCHHHhcC-c
Confidence 34555544 488999999999999999998555569999999999999999998876 345678999999987764 7
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEE
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~l 281 (362)
+.||.|++..- ..-..+|..+.+++++||++
T Consensus 168 ~~~drvim~lp----~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 168 GKFDRVIMNLP----ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp T-EEEEEE--T----SSGGGGHHHHHHHEEEEEEE
T ss_pred cccCEEEECCh----HHHHHHHHHHHHHhcCCcEE
Confidence 88999998552 23346799999999999876
No 193
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.58 E-value=7.7e-07 Score=86.87 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=85.9
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCCCcceE
Q 018003 174 KPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDA 251 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD~ 251 (362)
.+.++.+|||+++|.|.-+..++... ..+.+++.|+++..++..++++++. +..++.+...|...++ ...+.||.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~---G~~nv~v~~~D~~~~~~~~~~~fD~ 186 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC---GVSNVALTHFDGRVFGAALPETFDA 186 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCchhhhhhhchhhcCe
Confidence 66789999999999999988888764 2358999999999999999999886 3467888888887653 22457999
Q ss_pred EE----ec--ccccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003 252 VH----AG--AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 252 V~----~~--~vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
|+ |+ +++..-++. ..+|..+.++|||||+|+.+|=..
T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 99 33 223221111 367899999999999998877543
No 194
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.58 E-value=4.5e-07 Score=82.57 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=84.5
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC-CCCEEEEEecCCCCC-CCCCcceEEEecc
Q 018003 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLP-FASSSIDAVHAGA 256 (362)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~p-~~~~~fD~V~~~~ 256 (362)
++||-||-|.|..++.+.+.....+++.+|+++..++.|++.+....++. .+++.++..|..++- -...+||+|++.-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999999877899999999999999999987663222 489999999986542 1233799999754
Q ss_pred cccCCCCH------HHHHHHHHhhccCCcEEEEE
Q 018003 257 AIHCWSSP------STGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 257 vl~h~~d~------~~~l~~i~r~LkpgG~li~~ 284 (362)
.=. . .| ..+++.+++.|+++|+++..
T Consensus 158 tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 311 1 22 58999999999999999977
No 195
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.56 E-value=1.5e-06 Score=77.67 Aligned_cols=156 Identities=19% Similarity=0.134 Sum_probs=91.4
Q ss_pred HHHhhcCCC-CCCeEEEEcCcc--chHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCC--EEEEEecCCC
Q 018003 168 LMKGYLKPV-LGGNIIDASCGS--GLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADISR 241 (362)
Q Consensus 168 ~l~~~l~~~-~~~~vLDiGcG~--G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--~~~~~~d~~~ 241 (362)
+..+++... .-...||||||- -.+...+++ ..|+++|+.+|.++-.+..++..+... ++ ..++++|+.+
T Consensus 58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-----~~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-----PRGRTAYVQADLRD 132 (267)
T ss_dssp HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT------TTSEEEEEE--TT-
T ss_pred HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-----CCccEEEEeCCCCC
Confidence 333444333 235799999994 334555544 468889999999999999999988775 44 8999999976
Q ss_pred CC------CCCCcce-----EEEecccccCCCC---HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh
Q 018003 242 LP------FASSSID-----AVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL 307 (362)
Q Consensus 242 ~p------~~~~~fD-----~V~~~~vl~h~~d---~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (362)
.. --.+-+| .|++..+|||++| |..+++.+...|.||..|+++....+... .....+...+.
T Consensus 133 p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p---~~~~~~~~~~~- 208 (267)
T PF04672_consen 133 PEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP---ERAEALEAVYA- 208 (267)
T ss_dssp HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH---HHHHHHHHHHH-
T ss_pred HHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH---HHHHHHHHHHH-
Confidence 42 0112233 7888999999964 78999999999999999999988765321 11122222221
Q ss_pred cccccccccccCCHHHHHHHHHHCCCEEEE
Q 018003 308 DLKIVGFSIPVLGFDDLKRIFRQFQLVVNL 337 (362)
Q Consensus 308 ~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~ 337 (362)
..+....+-|.+++..+|. ||+.++
T Consensus 209 ---~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 209 ---QAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp ---HCCS----B-HHHHHHCCT--TSEE-T
T ss_pred ---cCCCCceecCHHHHHHHcC--CCccCC
Confidence 1122567789999999986 887653
No 196
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.56 E-value=3.7e-07 Score=85.27 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=90.1
Q ss_pred cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHhhcCCCC
Q 018003 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (362)
Q Consensus 156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 228 (362)
.+.+++|....+.+.+.+...++.+|+|.+||+|.|+..+.+. ....+++|+|+++.++..|+-++.-. +..
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~~ 103 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GID 103 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-THH
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-ccc
Confidence 3678899999999999998888889999999999999887763 24468999999999999998765433 122
Q ss_pred CCCEEEEEecCCCCCCC--CCcceEEEecccccCC--------CC-------------HHHHHHHHHhhccCCcEEEEEE
Q 018003 229 KENFLLVRADISRLPFA--SSSIDAVHAGAAIHCW--------SS-------------PSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 229 ~~~~~~~~~d~~~~p~~--~~~fD~V~~~~vl~h~--------~d-------------~~~~l~~i~r~LkpgG~li~~~ 285 (362)
..+..+..+|....+.. ...||+|+++--+--. .+ ...++..+.+.||+||++.+..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 33456888887655433 4789999987332111 01 1258899999999999999888
Q ss_pred Ec
Q 018003 286 YI 287 (362)
Q Consensus 286 ~~ 287 (362)
|.
T Consensus 184 p~ 185 (311)
T PF02384_consen 184 PN 185 (311)
T ss_dssp EH
T ss_pred cc
Confidence 75
No 197
>PLN02823 spermine synthase
Probab=98.56 E-value=4.8e-07 Score=84.66 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=80.5
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCCcceEEEe
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA 254 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~ 254 (362)
..++||.||+|.|..+..+.+.....+++.+|+++++++.|++.+.... ....++++++.+|.... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 3569999999999999988886555689999999999999999875421 11257899999998653 334578999997
Q ss_pred cccccCCC-C------HHHHHH-HHHhhccCCcEEEEE
Q 018003 255 GAAIHCWS-S------PSTGVA-EISRVLRPGGVFVGT 284 (362)
Q Consensus 255 ~~vl~h~~-d------~~~~l~-~i~r~LkpgG~li~~ 284 (362)
-.. .... . -..+++ .+.+.|+|||++++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 631 1110 1 125777 899999999998765
No 198
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.53 E-value=6e-07 Score=85.44 Aligned_cols=112 Identities=14% Similarity=0.181 Sum_probs=76.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
+..++.+.+++... +.++||++||+|.++..+++... +|+|+|.++.+++.+++++... ...++.++.+|+.+.
T Consensus 193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~---~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAAN---GIDNVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHh---CCCcEEEEECCHHHH
Confidence 44455666665532 35799999999999998888754 8999999999999999988776 134899999998652
Q ss_pred -C-CC--------------CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 243 -P-FA--------------SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 243 -p-~~--------------~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
+ +. ...||+|+..--= -.-...+++.+. +|+++++++.
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~---~~~~ivyvSC 320 (362)
T PRK05031 267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQ---AYERILYISC 320 (362)
T ss_pred HHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHH---ccCCEEEEEe
Confidence 1 10 1258999863210 001123444444 4788887764
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=7.8e-07 Score=79.47 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=74.1
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
...++.+.+.....++..|||||+|.|.++..|++++. .|+++|+++.+++..++++.. ..++.++.+|+...
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~ 88 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcC
Confidence 34467788888887889999999999999999999987 899999999999999998653 47999999999998
Q ss_pred CCCCC-cceEEEecc
Q 018003 243 PFASS-SIDAVHAGA 256 (362)
Q Consensus 243 p~~~~-~fD~V~~~~ 256 (362)
+++.- .++.|+++-
T Consensus 89 d~~~l~~~~~vVaNl 103 (259)
T COG0030 89 DFPSLAQPYKVVANL 103 (259)
T ss_pred cchhhcCCCEEEEcC
Confidence 87643 578888763
No 200
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.49 E-value=1.1e-06 Score=83.33 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=84.7
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----CCCCcceEEE
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVH 253 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~~~~~fD~V~ 253 (362)
|++|||+=|=||.++..++..|. .+|++||.|...++.|+++++.+ +....++.++++|+.++- -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LN-g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELN-GLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhc-CCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 88999999999999999988774 59999999999999999999887 445667899999986531 2234899999
Q ss_pred eccc---------ccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 254 AGAA---------IHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 254 ~~~v---------l~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+--- ..-..|-..++..+.++|+|||.+++++-
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 6311 01112334778999999999999998864
No 201
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.47 E-value=1.4e-06 Score=78.72 Aligned_cols=107 Identities=12% Similarity=0.162 Sum_probs=78.8
Q ss_pred CCeEEEEcCccch----HHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHhh------c-C------------CC--
Q 018003 178 GGNIIDASCGSGL----FSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQ------E-S------------NF-- 227 (362)
Q Consensus 178 ~~~vLDiGcG~G~----~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~------~-~------------~~-- 227 (362)
.-+|+-+||++|. ++..+.+.+ +..+++|+|+|..+++.|++-.=. . . ++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999995 333334433 357999999999999999862210 0 0 00
Q ss_pred -----CCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEE
Q 018003 228 -----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 228 -----~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~ 284 (362)
....|.|-..|+...++..+.||+|+|-+||-++..+ ..+++.++..|+|||+|++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1235667777776655356779999999999999765 47999999999999999974
No 202
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.46 E-value=1.4e-06 Score=78.89 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=79.7
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (362)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~ 254 (362)
.-.++.|||+|||+|.++...++.|. .+|+++|.|+ |.++|++.++.+ ....++.++.+-++++.+| ++.|+|++
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N--~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASN--NLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcC--CccceEEEccCccccccCc-hhccEEEe
Confidence 34578999999999999999999885 5899999865 999999988875 5578999999999988765 56999997
Q ss_pred cccccCCCCH--HHHHHHHHhhccCCcEEEE
Q 018003 255 GAAIHCWSSP--STGVAEISRVLRPGGVFVG 283 (362)
Q Consensus 255 ~~vl~h~~d~--~~~l~~i~r~LkpgG~li~ 283 (362)
--.-.-+-+- ....-..++.|||.|..+=
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 5432222121 1233445699999998774
No 203
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=4e-07 Score=72.75 Aligned_cols=85 Identities=18% Similarity=0.279 Sum_probs=69.1
Q ss_pred HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCc
Q 018003 169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS 248 (362)
Q Consensus 169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~ 248 (362)
+..-.+.-.|+.++|+|||.|.+.....--+ ...|+|+|+++++++.++++.+.. .-++.++++|+..+.+..+.
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~g~ 114 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKGGI 114 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccCCe
Confidence 3344455568899999999999985554433 358999999999999999988876 56789999999998878899
Q ss_pred ceEEEecccc
Q 018003 249 IDAVHAGAAI 258 (362)
Q Consensus 249 fD~V~~~~vl 258 (362)
||.++.+.-+
T Consensus 115 fDtaviNppF 124 (185)
T KOG3420|consen 115 FDTAVINPPF 124 (185)
T ss_pred EeeEEecCCC
Confidence 9999987654
No 204
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.44 E-value=1.4e-06 Score=82.59 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=76.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
+..++.+.+++... +.+|||++||+|.++..+++... .|+|+|+++++++.|++++..+ ...++.++.+|+.++
T Consensus 184 ~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~---~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 184 IKMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAAN---NIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc---CCCcEEEEEcCHHHH
Confidence 34455566665532 24799999999999998888764 9999999999999999998776 234799999998653
Q ss_pred CCC----------C------CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 243 PFA----------S------SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 243 p~~----------~------~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
.-. . ..||+|+..-- .-.-...+++.+. +|+++++++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEc
Confidence 210 1 13798886321 0001124444443 4788888775
No 205
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.43 E-value=4.7e-06 Score=68.46 Aligned_cols=104 Identities=31% Similarity=0.486 Sum_probs=75.9
Q ss_pred EEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCC-EEEEEecCCC--CCCCC-CcceEEEec
Q 018003 181 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR--LPFAS-SSIDAVHAG 255 (362)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~--~p~~~-~~fD~V~~~ 255 (362)
++|+|||+|... .+...... ..++|+|+++.++..++...... ... +.+..+|... +++.. ..||++ ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 999999999966 33333222 37899999999999855543211 111 6788888776 77776 489999 55
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCC
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 290 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~ 290 (362)
....+..++...+.++.+.|+|+|.+++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 55444444889999999999999999998877543
No 206
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.43 E-value=1.8e-06 Score=78.72 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=77.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C--CCCCcceEEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVH 253 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p--~~~~~fD~V~ 253 (362)
.+++|||+=|=||.++..++..|. .+|+.+|.|..+++.++++++.+ +....++++++.|+.+. . -..++||+|+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 378999999999999998887663 58999999999999999999887 34456899999998642 1 1246899999
Q ss_pred eccc-c-----cCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 254 AGAA-I-----HCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 254 ~~~v-l-----~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+--- + .-..+...++..+.++|+|||.|++.+-
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 6411 0 0012334788899999999999886653
No 207
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.42 E-value=1.7e-06 Score=76.37 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=72.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p 243 (362)
..++.+......+++..|||+|.|||.++..+.+.+. .|+++|+++.|+....++++.- .......++.+|+...+
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gt--p~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGT--PKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCC--CccceeeEEecccccCC
Confidence 4456777777778899999999999999999999987 9999999999999999998765 11368999999998876
Q ss_pred CCCCcceEEEec
Q 018003 244 FASSSIDAVHAG 255 (362)
Q Consensus 244 ~~~~~fD~V~~~ 255 (362)
++ .||.++++
T Consensus 121 ~P--~fd~cVsN 130 (315)
T KOG0820|consen 121 LP--RFDGCVSN 130 (315)
T ss_pred Cc--ccceeecc
Confidence 43 59999985
No 208
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.41 E-value=8.6e-06 Score=75.65 Aligned_cols=112 Identities=14% Similarity=0.059 Sum_probs=80.1
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHh-hcCCCCCCCEEE--EEecCC
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQ-QESNFPKENFLL--VRADIS 240 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~~--~~~d~~ 240 (362)
.+.+.++ ++..++|+|||.|.-+..|.+. +....++++|+|.++++.+.+++. .. .+.+.+ +++|+.
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~----~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN----FSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc----CCCeEEEEEEecHH
Confidence 3444443 3668999999999876655443 334689999999999999999988 44 455554 888885
Q ss_pred CC----CC--CCCcceEEEecc-cccCCCCHH--HHHHHHHh-hccCCcEEEEEE
Q 018003 241 RL----PF--ASSSIDAVHAGA-AIHCWSSPS--TGVAEISR-VLRPGGVFVGTT 285 (362)
Q Consensus 241 ~~----p~--~~~~fD~V~~~~-vl~h~~d~~--~~l~~i~r-~LkpgG~li~~~ 285 (362)
+. +- ......+++..+ +|.+++... .+|+++++ .|+|||.|++..
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 52 21 123356666654 788886554 78999999 999999988854
No 209
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.39 E-value=1.1e-06 Score=80.64 Aligned_cols=95 Identities=17% Similarity=0.217 Sum_probs=74.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p- 243 (362)
++.+.+.+.+.+++.+||.+||.|..+..+++..+ .+.|+|+|.++.+++.+++++.. ..++.++++|+..+.
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKE 82 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHH
Confidence 45677777777889999999999999999999864 57999999999999999987643 258999999998753
Q ss_pred -CCCC--cceEEEecccc--cCCCCHH
Q 018003 244 -FASS--SIDAVHAGAAI--HCWSSPS 265 (362)
Q Consensus 244 -~~~~--~fD~V~~~~vl--~h~~d~~ 265 (362)
.+.+ ++|.|++.... +++.++.
T Consensus 83 ~l~~~~~~vDgIl~DLGvSs~Qld~~~ 109 (296)
T PRK00050 83 VLAEGLGKVDGILLDLGVSSPQLDDAE 109 (296)
T ss_pred HHHcCCCccCEEEECCCccccccCCCc
Confidence 1122 79999986543 4455554
No 210
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.38 E-value=3.9e-06 Score=76.75 Aligned_cols=117 Identities=19% Similarity=0.142 Sum_probs=76.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC--CC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RL 242 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~ 242 (362)
+..+...+..-...+|||+|||+|..+.++.+..+ ..+++++|.|+.|++.++..++...+ .....+ ..++. ..
T Consensus 22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~-~~~~~~~~~ 98 (274)
T PF09243_consen 22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEW-RRVLYRDFL 98 (274)
T ss_pred HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchh-hhhhhcccc
Confidence 44555555444567999999999988777666432 34899999999999999987665411 111111 11111 12
Q ss_pred CCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccC
Q 018003 243 PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
++ ...|+|++.++|..+++. ..+++.+.+.+++ .|++.++...
T Consensus 99 ~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 99 PF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred cC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 22 234999999999998872 2455566555555 8888888654
No 211
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.37 E-value=1.2e-06 Score=75.04 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=86.8
Q ss_pred CCcHHHHHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe
Q 018003 160 PGPEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237 (362)
Q Consensus 160 ~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (362)
|..+...+.+-..+.. -.+.++||+=||+|.++..+..+|. .+|+.+|.++..++..+++++.. ....++.++..
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l--~~~~~~~v~~~ 99 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKL--GLEDKIRVIKG 99 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH--T-GGGEEEEES
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHh--CCCcceeeecc
Confidence 3445555555555554 3688999999999999999998884 58999999999999999998876 11235888888
Q ss_pred cCCC-CC---CCCCcceEEEecccccCCCC-HHHHHHHHH--hhccCCcEEEEEEEcc
Q 018003 238 DISR-LP---FASSSIDAVHAGAAIHCWSS-PSTGVAEIS--RVLRPGGVFVGTTYIV 288 (362)
Q Consensus 238 d~~~-~p---~~~~~fD~V~~~~vl~h~~d-~~~~l~~i~--r~LkpgG~li~~~~~~ 288 (362)
|... ++ -....||+|++.--... .. ...++..+. .+|+++|.+++.....
T Consensus 100 d~~~~l~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CHHHHHHhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 8533 21 24678999998643322 22 256777776 7999999999887654
No 212
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=4.8e-06 Score=80.51 Aligned_cols=110 Identities=21% Similarity=0.302 Sum_probs=87.5
Q ss_pred cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (362)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 241 (362)
.+..++...+++...++.++||+=||.|.|+..++++.. +|+|+|+++++++.|+++++.+ +..|+.+..+++++
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n---~i~N~~f~~~~ae~ 352 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAAN---GIDNVEFIAGDAEE 352 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHc---CCCcEEEEeCCHHH
Confidence 355677788888887888999999999999999998765 9999999999999999999887 35669999999987
Q ss_pred CCCC---CCcceEEEecccccCCCCHH------HHHHHHHhhccCCcEEEEEE
Q 018003 242 LPFA---SSSIDAVHAGAAIHCWSSPS------TGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 242 ~p~~---~~~fD~V~~~~vl~h~~d~~------~~l~~i~r~LkpgG~li~~~ 285 (362)
.... ...+|+|+. ||. .+++.+.+ ++|..+++++.
T Consensus 353 ~~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 353 FTPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred HhhhccccCCCCEEEE--------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence 6533 247899985 442 44555544 57777888764
No 213
>PRK00536 speE spermidine synthase; Provisional
Probab=98.34 E-value=4.9e-06 Score=74.99 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=76.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
..++||=||.|.|..++.+.+.. .+|+.+|+++++++.+++.+.... +...++++++.. +.+ ...++||+|+.-
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence 46899999999999999999874 399999999999999999654321 234677887752 221 123689999976
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
.. .+..+.+.+++.|+|||+++...
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence 42 45678899999999999999753
No 214
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.32 E-value=1.7e-06 Score=77.80 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=81.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCC-cceEEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASS-SIDAVH 253 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~-~fD~V~ 253 (362)
...+||-||.|.|..+..+.+..+..+++.+|+++..++.|++.+.... +...++++++.+|.... .-..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 4679999999999999999887655799999999999999999876431 11257999999998543 11233 899999
Q ss_pred ecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEc
Q 018003 254 AGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 254 ~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
.-..-..-+.+ ..+++.+.+.|+|||++++....
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 75432221222 47899999999999999987643
No 215
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.32 E-value=1.3e-07 Score=80.01 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=80.6
Q ss_pred HHHHHHHHhhcCCC---CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC
Q 018003 163 EKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (362)
Q Consensus 163 ~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 239 (362)
++..+.++..-++. .+.++||+|+|.|..+..++.... +|++.|+|..|..+.+++ +..++.. +
T Consensus 95 e~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynVl~~-~ 161 (288)
T KOG3987|consen 95 EEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNVLTE-I 161 (288)
T ss_pred HHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCceeee-h
Confidence 44445555443332 346999999999999998887654 899999999999888774 2222211 1
Q ss_pred CCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccC-CcEEEEEEE
Q 018003 240 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP-GGVFVGTTY 286 (362)
Q Consensus 240 ~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp-gG~li~~~~ 286 (362)
+..--+-+||+|.|..+|..-.+|-++|+.|+.+|+| .|+++++..
T Consensus 162 -ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 162 -EWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred -hhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence 1111234699999999998888999999999999999 888887543
No 216
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=5.7e-06 Score=74.54 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=102.7
Q ss_pred HHHHHhhcCC----CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHh--hcC--------------
Q 018003 166 FELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ--QES-------------- 225 (362)
Q Consensus 166 ~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~-------------- 225 (362)
++.|..+.+. ....+||--|||.|+++..++..|+ .+-|-|.|--|+--..-.+. +..
T Consensus 135 i~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 135 IEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred HHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 4455554443 2346899999999999999999998 67777888776543222210 000
Q ss_pred ---------------------CCCCCCEEEEEecCCCC-C--CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEE
Q 018003 226 ---------------------NFPKENFLLVRADISRL-P--FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281 (362)
Q Consensus 226 ---------------------~~~~~~~~~~~~d~~~~-p--~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~l 281 (362)
+..........||+.+. + -..+.||+|+..+-+..-.+....|+.|..+|||||++
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVW 292 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEE
Confidence 11222333445666443 2 22357999999988888778889999999999999999
Q ss_pred EEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE
Q 018003 282 VGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL 339 (362)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~ 339 (362)
+=..| ++.++.... .......--++.+++..+.+..||++++..
T Consensus 293 iNlGP----------LlYHF~d~~----g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 293 INLGP----------LLYHFEDTH----GVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred Eeccc----------eeeeccCCC----CCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 84433 222221100 000112345789999999999999988776
No 217
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.8e-05 Score=68.09 Aligned_cols=100 Identities=23% Similarity=0.290 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------CCC
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS 246 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------~~~ 246 (362)
.++.+|+|+|+..|.++..+++.. ....|+|+|+.+- .+.+++.++++|+..-+ +..
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~--------------~~~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM--------------KPIPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc--------------ccCCCceEEeeeccCccHHHHHHHHcCC
Confidence 458999999999999999988873 4446999999772 23577999999997643 334
Q ss_pred CcceEEEecccc--------cCCCCH---HHHHHHHHhhccCCcEEEEEEEccC
Q 018003 247 SSIDAVHAGAAI--------HCWSSP---STGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 247 ~~fD~V~~~~vl--------~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
..+|+|++-..= +|.... ..++.-+..+|+|||.+++-.+..+
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 557999965331 222111 2456667789999999999887665
No 218
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.28 E-value=2.5e-05 Score=72.76 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=94.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~ 244 (362)
+..++++.... |.+|||+=+|.|.|+..+++.+.. .|+++|++|.+++..+++++.+ .....+..+++|....+.
T Consensus 178 ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN--~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 178 ERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLN--KVEGRVEPILGDAREVAP 252 (341)
T ss_pred HHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhc--CccceeeEEeccHHHhhh
Confidence 34556666555 889999999999999999999863 3999999999999999998876 334458899999988875
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
..+.+|-|++... .+-..++....+.+++||++-..+...+
T Consensus 253 ~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 253 ELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred ccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 5588999998654 4556788999999999999988776653
No 219
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.28 E-value=2.3e-06 Score=74.44 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=70.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc------CCCCCCCEEEEEecCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFPKENFLLVRADIS 240 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~d~~ 240 (362)
..+.+.++..++...+|+|||.|.....++........+|||+.+...+.|++..+.. -+....++.+..+|+.
T Consensus 32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 4566677777889999999999998877766544346999999999888777543221 0223467888899987
Q ss_pred CCCCCC---CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003 241 RLPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 241 ~~p~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~ 284 (362)
+.++.. ...|+|+++...-. ++....|.++...||+|-+++-.
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 654211 34699999876421 23446678888899998887643
No 220
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.25 E-value=8.7e-06 Score=81.55 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=67.3
Q ss_pred CCCCCcHHHHHHHHhhcCCC-------CCCeEEEEcCccchHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHH
Q 018003 157 GGFPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFV 221 (362)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~ 221 (362)
+.+++|....+.+.+.+... ...+|||.|||+|.++..+....+ ...++|+|+++.++..++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 55677777777777665321 345899999999999988876532 247899999999999999987
Q ss_pred hhcCCCCCCCEEEEEecCCCCC-----CCCCcceEEEecc
Q 018003 222 QQESNFPKENFLLVRADISRLP-----FASSSIDAVHAGA 256 (362)
Q Consensus 222 ~~~~~~~~~~~~~~~~d~~~~p-----~~~~~fD~V~~~~ 256 (362)
.... ...+.+...|..... -..+.||+|+.+-
T Consensus 84 ~~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 84 GEFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNP 120 (524)
T ss_pred hhcC---CCCceeeecccccccccccccccCcccEEEeCC
Confidence 6651 123445555543211 1125799999873
No 221
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.3e-05 Score=74.29 Aligned_cols=119 Identities=25% Similarity=0.297 Sum_probs=90.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p- 243 (362)
......+.+.+|.+|||+.++.|.=+..+++...+ ..|+++|.++.-++..++++++. +..++..+..|...++
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl---G~~nv~~~~~d~~~~~~ 222 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL---GVRNVIVVNKDARRLAE 222 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc---CCCceEEEecccccccc
Confidence 44456788899999999999999988888887653 45799999999999999999887 3556788888876654
Q ss_pred -CC-CCcceEEEec------ccccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003 244 -FA-SSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 244 -~~-~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
.. .+.||.|+.- +++.-=|+. ..+|....++|||||.|+.+|=..
T Consensus 223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 12 2359999953 344222221 267999999999999999887443
No 222
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.22 E-value=5.6e-07 Score=72.67 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=48.8
Q ss_pred CEEEEEecCCCCCCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccC
Q 018003 231 NFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 231 ~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
.+.+++-.....+|.+++.|+|.+.+++||+.-. ..++++++|.|||||.|-++.|...
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 4555555555678899999999999999999643 4789999999999999999998753
No 223
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.18 E-value=3.1e-05 Score=80.10 Aligned_cols=139 Identities=17% Similarity=0.094 Sum_probs=91.7
Q ss_pred HhhhhhhhhccCCCCCcHHHHHHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhC-------------------------
Q 018003 146 YERGWRQNFVWGGFPGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSG------------------------- 199 (362)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~------------------------- 199 (362)
..|+||... ..-+-.+..+..++...+- .++..++|..||+|.++...+...
T Consensus 160 ~rRgyr~~~--~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w 237 (702)
T PRK11783 160 HQRGYRQAT--GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALW 237 (702)
T ss_pred hhccCccCC--CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHH
Confidence 344555543 2222334455555555443 457899999999999987775420
Q ss_pred -----------------CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC--CCcceEEEecccc-c
Q 018003 200 -----------------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAAI-H 259 (362)
Q Consensus 200 -----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~--~~~fD~V~~~~vl-~ 259 (362)
....++|+|+++.+++.|++++... +....+.+.++|+.+++.+ .++||+|+++--. +
T Consensus 238 ~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~--g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 238 QELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRA--GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGE 315 (702)
T ss_pred HHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHc--CCCcceEEEeCChhhcccccccCCCCEEEECCCCcC
Confidence 0126999999999999999999876 2345689999999887644 3579999998432 2
Q ss_pred CCC---CHHHHHHHHHhhcc---CCcEEEEEEEcc
Q 018003 260 CWS---SPSTGVAEISRVLR---PGGVFVGTTYIV 288 (362)
Q Consensus 260 h~~---d~~~~l~~i~r~Lk---pgG~li~~~~~~ 288 (362)
.+. +...+.+++.+.|| +|+.+++.++..
T Consensus 316 r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 316 RLGEEPALIALYSQLGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred ccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 222 22334444444444 899988877643
No 224
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.16 E-value=2.9e-05 Score=67.32 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=85.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CC-
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP- 243 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p- 243 (362)
..+...++...+++.||||.=||.-+..++..-| +++|+++|++++..+.+.+..+.. +...++.+++++..+ ++
T Consensus 63 ~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a--gv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 63 QFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA--GVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc--cccceeeeeecchhhhHHH
Confidence 3344444444467999999888888777777643 579999999999999998877665 557899999998754 21
Q ss_pred ----CCCCcceEEEecccccCCCC-HHHHHHHHHhhccCCcEEEEEE
Q 018003 244 ----FASSSIDAVHAGAAIHCWSS-PSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 244 ----~~~~~fD~V~~~~vl~h~~d-~~~~l~~i~r~LkpgG~li~~~ 285 (362)
...++||.++. .|..+ -.....++.+++|+||++++--
T Consensus 141 l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 141 LLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 34678999994 55543 3478999999999999999764
No 225
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=1.2e-06 Score=58.70 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=39.6
Q ss_pred ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (362)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~ 121 (362)
+.+++++||.|+++|.... +.+.+.|+.|+..|++.+|++.++.++
T Consensus 4 ~LLeiLaCP~~kg~L~~~~---------~~~~L~c~~~~~aYpI~dGIPvlL~~e 49 (60)
T COG2835 4 RLLEILACPVCKGPLVYDE---------EKQELICPRCKLAYPIRDGIPVLLPDE 49 (60)
T ss_pred hhheeeeccCcCCcceEec---------cCCEEEecccCceeecccCccccCchh
Confidence 5688999999999988765 236899999999999999999888753
No 226
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.14 E-value=1.5e-05 Score=72.55 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=78.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
...++.+.+.+...++..|||||+|+|.++..+.+.+. +++++|+++.+.+..++++.. .+++.++.+|+..+
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhcc
Confidence 45567888888877889999999999999999999985 999999999999999997653 47999999999988
Q ss_pred CCCC---CcceEEEecccccCCCCHHHHHHHHHhhccC
Q 018003 243 PFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277 (362)
Q Consensus 243 p~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp 277 (362)
.... .....|+++--. + --..++..+...-+.
T Consensus 89 ~~~~~~~~~~~~vv~NlPy-~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNLPY-N--ISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEETG-T--GHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEecc-c--chHHHHHHHhhcccc
Confidence 7554 334566654322 2 223456666553333
No 227
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=2.3e-05 Score=65.96 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=97.6
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHH---HH-HHH-HHhhcCCCCCCCEEEEEecCCC
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENML---KQ-CYE-FVQQESNFPKENFLLVRADISR 241 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~---~~-a~~-~~~~~~~~~~~~~~~~~~d~~~ 241 (362)
.++.+.+.+++.+|+|+-.|.|++++.+... ++.+.|+++-+.+... .. .+. .+.++ ....|++.+-.+...
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e--~~~aN~e~~~~~~~A 116 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE--PVYANVEVIGKPLVA 116 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh--hhhhhhhhhCCcccc
Confidence 4566777888999999999999999999876 5656788876654311 00 110 01100 113455555556555
Q ss_pred CCCCCCcceEEEecccccCC-------CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccc
Q 018003 242 LPFASSSIDAVHAGAAIHCW-------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGF 314 (362)
Q Consensus 242 ~p~~~~~fD~V~~~~vl~h~-------~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (362)
++ +.+..|++.....-|-+ ..-.++.+++.+.|||||++++.+...+...... ...
T Consensus 117 ~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------------dt~- 179 (238)
T COG4798 117 LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------------DTI- 179 (238)
T ss_pred cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------------hhh-
Confidence 55 44556777653322111 1235789999999999999999987764321111 111
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEE
Q 018003 315 SIPVLGFDDLKRIFRQFQLVVNLK 338 (362)
Q Consensus 315 ~~~~~s~~~l~~ll~~~Gf~~v~~ 338 (362)
..++.+...+....+++||.....
T Consensus 180 ~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 180 TLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred hhcccChHHHHHHHHhhcceeeee
Confidence 456788899999999999976544
No 228
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.13 E-value=4.1e-06 Score=71.78 Aligned_cols=97 Identities=23% Similarity=0.344 Sum_probs=63.9
Q ss_pred CCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------CC--
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA-- 245 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------~~-- 245 (362)
++.++||+||++|.++..+.+++ +...|+|+|+.+.. ...++..+++|+.... +.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------------PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------------S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------------cccceeeeecccchhhHHHhhhhhcccc
Confidence 45899999999999999999987 44699999998750 1246666666664321 11
Q ss_pred CCcceEEEecccccCCCC----H-------HHHHHHHHhhccCCcEEEEEEEc
Q 018003 246 SSSIDAVHAGAAIHCWSS----P-------STGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d----~-------~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
.+.+|+|++-.+...-.+ . ...+.-+.+.|+|||.+++....
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 268999999874333222 1 13455566789999999988765
No 229
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.13 E-value=6e-05 Score=63.95 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=91.8
Q ss_pred CCcHHHHHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe
Q 018003 160 PGPEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237 (362)
Q Consensus 160 ~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (362)
|+.+...+.+-.++.+ -.|.++||+=+|+|.++.....+|. ..++.+|.+...+...+++++.. ....+..++..
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l--~~~~~~~~~~~ 100 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKAL--GLEGEARVLRN 100 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHh--CCccceEEEee
Confidence 4456666777777776 5789999999999999999999875 58999999999999999998876 12367888888
Q ss_pred cCCCC-CCCCC--cceEEEecccccC-CCCHHHHHHH--HHhhccCCcEEEEEEEc
Q 018003 238 DISRL-PFASS--SIDAVHAGAAIHC-WSSPSTGVAE--ISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 238 d~~~~-p~~~~--~fD~V~~~~vl~h-~~d~~~~l~~--i~r~LkpgG~li~~~~~ 287 (362)
|.... +-... .||+|+.---.+. +.++...+.. -..+|+|+|.+++....
T Consensus 101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 88643 11222 4999997654431 1122333333 45789999999987654
No 230
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.12 E-value=3.5e-05 Score=67.20 Aligned_cols=130 Identities=15% Similarity=0.089 Sum_probs=95.2
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v 257 (362)
+.+++|||+|.|.-+..++-..|+.+++-+|....-+.+.++-..+. +..|+.++++.++.+.-....||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---GLENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---CCCCeEEehhhHhhcccccccCcEEEeehc
Confidence 57999999999999998887778889999999988777777655554 356899999999987632222999999876
Q ss_pred ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEE
Q 018003 258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNL 337 (362)
Q Consensus 258 l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~ 337 (362)
.+...++.-+..++|+||.+++.-.. ...+ -..+.++.....|+.+.+
T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~~k~~------------~~~~----------------e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLAYKGL------------AGKD----------------ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred ----cchHHHHHHHHHhcccCCcchhhhHH------------hhhh----------------hHHHHHHHHHhhcCcEEE
Confidence 55667788888999999987632111 0111 123567777888887776
Q ss_pred EEEec
Q 018003 338 KLFYG 342 (362)
Q Consensus 338 ~~~~g 342 (362)
+....
T Consensus 193 ~~~~~ 197 (215)
T COG0357 193 VFSLT 197 (215)
T ss_pred EEEee
Confidence 65543
No 231
>PRK11827 hypothetical protein; Provisional
Probab=98.09 E-value=1.6e-06 Score=58.91 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=38.4
Q ss_pred ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121 (362)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~ 121 (362)
..+.+++||.|+++|.... ....+.|..|+..|++++|++.++.++
T Consensus 4 ~LLeILaCP~ckg~L~~~~---------~~~~Lic~~~~laYPI~dgIPVlL~de 49 (60)
T PRK11827 4 RLLEIIACPVCNGKLWYNQ---------EKQELICKLDNLAFPLRDGIPVLLETE 49 (60)
T ss_pred HHHhheECCCCCCcCeEcC---------CCCeEECCccCeeccccCCccccCHHH
Confidence 4578999999999997653 125799999999999999999888754
No 232
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.09 E-value=5.6e-05 Score=65.83 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=84.3
Q ss_pred EEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCCCCcceEEEeccccc
Q 018003 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAGAAIH 259 (362)
Q Consensus 181 vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~~~~fD~V~~~~vl~ 259 (362)
|.||||-.|.+..+|.+++....++++|+++..++.|+++++.. +...++.+..+|-.. ++ +.+..|.|+..++=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-TTTEEEEE-SGGGG---GGG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCcccEEEEECCcccccC-CCCCCCEEEEecCCH
Confidence 68999999999999999997778999999999999999999886 446789999999543 43 222378888766522
Q ss_pred CCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE
Q 018003 260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL 339 (362)
Q Consensus 260 h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~ 339 (362)
. -....|.+....++....|++. |+ -....++++|.+.||..++..
T Consensus 78 ~--lI~~ILe~~~~~~~~~~~lILq-P~-------------------------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 78 E--LIIEILEAGPEKLSSAKRLILQ-PN-------------------------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp H--HHHHHHHHTGGGGTT--EEEEE-ES-------------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred H--HHHHHHHhhHHHhccCCeEEEe-CC-------------------------------CChHHHHHHHHHCCCEEEEeE
Confidence 1 1335666666666655556653 22 234579999999999877554
Q ss_pred E
Q 018003 340 F 340 (362)
Q Consensus 340 ~ 340 (362)
-
T Consensus 124 l 124 (205)
T PF04816_consen 124 L 124 (205)
T ss_dssp E
T ss_pred E
Confidence 3
No 233
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.07 E-value=3.8e-05 Score=73.62 Aligned_cols=102 Identities=25% Similarity=0.422 Sum_probs=88.0
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccccc
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~ 259 (362)
++|-+|||.-.+...+.+.|. ..++-+|.|+-.++....+.... .+...+...|+..+.|++++||+|+.-..++
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence 899999999999999988874 58999999999888887765443 5788999999999999999999999999998
Q ss_pred CCCCH----------HHHHHHHHhhccCCcEEEEEEE
Q 018003 260 CWSSP----------STGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 260 h~~d~----------~~~l~~i~r~LkpgG~li~~~~ 286 (362)
++-.+ ...+.+++|+|+|||+++..+.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 88422 1458899999999999888776
No 234
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.03 E-value=7.8e-05 Score=70.96 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=81.6
Q ss_pred CCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-CCCcceEEEec
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG 255 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-~~~~fD~V~~~ 255 (362)
+.+|||+-||+|..+..++.+.+ ...|+++|+++.+++.++++++.+ ...++.++++|+..+-. ....||+|...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N---~~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN---SVENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999988732 258999999999999999998776 12468899999865421 13579999874
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
- ...|..++..+.+.+++||.+.++..
T Consensus 122 P----fGs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 122 P----FGTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C----CCCcHHHHHHHHHhcccCCEEEEEec
Confidence 4 24667899999999999999999843
No 235
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.02 E-value=2e-05 Score=66.79 Aligned_cols=107 Identities=20% Similarity=0.270 Sum_probs=76.9
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC----CCCCCCEEEEEecCCC-CCCCCCcceEE
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFPKENFLLVRADISR-LPFASSSIDAV 252 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~d~~~-~p~~~~~fD~V 252 (362)
.-.+.|||||.|.++..++...|+..+.|+|+-...-++.+++++..+ ++...++.+...+... +| +-|.--
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFEKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc---chhhhc
Confidence 347999999999999999999999999999999999999998876553 2224566666665543 22 112222
Q ss_pred EecccccCCCCHH-------------HHHHHHHhhccCCcEEEEEEEc
Q 018003 253 HAGAAIHCWSSPS-------------TGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 253 ~~~~vl~h~~d~~-------------~~l~~i~r~LkpgG~li~~~~~ 287 (362)
-..-.+..++||. ..+.+..-+|++||.++..+-.
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 2222334445653 5688889999999999987754
No 236
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.01 E-value=0.00012 Score=68.79 Aligned_cols=138 Identities=17% Similarity=0.077 Sum_probs=96.1
Q ss_pred HHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-----------------------
Q 018003 145 IYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF----------------------- 201 (362)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----------------------- 201 (362)
+..|+||..- ..-+-.+.....+...-+..++..++|-=||+|.++...+..+.+
T Consensus 161 LhkRGyR~~~--g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 161 LHKRGYRVYD--GPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred hhhccccccC--CCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 3456666543 222223444556666666667789999999999999888776531
Q ss_pred ---------C-------EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccc-cCCCCH
Q 018003 202 ---------S-------LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI-HCWSSP 264 (362)
Q Consensus 202 ---------~-------~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl-~h~~d~ 264 (362)
. .++|+|+++.+++.|+.+++.. +..+.+.|.++|+..++-+-+.+|+|+++--- +-+.+.
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A--Gv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~ 316 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAA--GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE 316 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhc--CCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence 1 2779999999999999998886 55778999999999887544789999998432 222232
Q ss_pred ---H----HHHHHHHhhccCCcEEEEEEE
Q 018003 265 ---S----TGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 265 ---~----~~l~~i~r~LkpgG~li~~~~ 286 (362)
. .+.+.+++.++-.+.+++++.
T Consensus 317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 317 ALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred hhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 2 344455566666677776653
No 237
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=6.9e-06 Score=66.97 Aligned_cols=123 Identities=16% Similarity=0.065 Sum_probs=79.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC--C
Q 018003 166 FELMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--L 242 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~ 242 (362)
...+++....-.|.+|||+|.|- |.-+..++...++..|...|-++..++-.++....+............-+... .
T Consensus 18 a~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs 97 (201)
T KOG3201|consen 18 AWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS 97 (201)
T ss_pred HHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH
Confidence 33444443334578999999995 55555566666778999999999999888876543200011111111111111 1
Q ss_pred CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
.....+||.|++...+-.-.--..+++.|.++|+|.|..++..|-+
T Consensus 98 q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 98 QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 1234589999999887543344678999999999999988776643
No 238
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.94 E-value=0.00012 Score=60.03 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCccchHHHHHHH-----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcce
Q 018003 176 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD 250 (362)
.+..+|+|+|||.|+++..++. . ++.+|+|+|.++..++.++++.+........+..+..++....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 5678999999999999999988 4 66799999999999999998877651111245666666654432 145577
Q ss_pred EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
+++..|.-.-+. ..+|+...+ |+-.+++..|.
T Consensus 102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 102 ILVGLHACGDLS--DRALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred EEEEeecccchH--HHHHHHHHH---cCCCEEEEcCC
Confidence 888766544331 234444444 66666665554
No 239
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.94 E-value=3.7e-05 Score=72.90 Aligned_cols=73 Identities=26% Similarity=0.410 Sum_probs=56.8
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 241 (362)
+..++.+.++++..++ .|||+-||.|.++..+++... +|+|+|.++.+++.|+++++.+ ...++.++.++.++
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N---~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLN---GIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE--SHH
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHc---CCCcceEEEeeccc
Confidence 4556778888887655 899999999999999999876 9999999999999999999886 35789999887644
No 240
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.93 E-value=0.0001 Score=68.20 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=69.0
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
.+|.++||+||++|.++..+.++|. .|++||..+ |...... .+++....+|......+.+.+|.|+|-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~~---------~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLMD---------TGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhhC---------CCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 5689999999999999999999986 999999655 3222222 578999999876653236789999986
Q ss_pred ccccCCCCHHHHHHHHHhhccCC
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPG 278 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~Lkpg 278 (362)
.+ ..|..+++-+.+.|..|
T Consensus 278 mv----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV----EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc----cCHHHHHHHHHHHHhcC
Confidence 65 57889999999999776
No 241
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.92 E-value=6.7e-05 Score=68.94 Aligned_cols=116 Identities=25% Similarity=0.269 Sum_probs=88.6
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-C
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F 244 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-~ 244 (362)
.....+.+.++.+|||+.++.|.-+..+++... .+.+++.|+++..+...++++++. +..++.....|.... + .
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~---g~~~v~~~~~D~~~~~~~~ 152 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL---GVFNVIVINADARKLDPKK 152 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT---T-SSEEEEESHHHHHHHHH
T ss_pred cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc---CCceEEEEeeccccccccc
Confidence 344557788899999999999999888888754 579999999999999999988876 356788887887655 1 2
Q ss_pred CCCcceEEEec------ccccCCCCH----------------HHHHHHHHhhc----cCCcEEEEEEE
Q 018003 245 ASSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVL----RPGGVFVGTTY 286 (362)
Q Consensus 245 ~~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~r~L----kpgG~li~~~~ 286 (362)
....||.|+.- +++..-++. .++|+.+.+.+ ||||+++.+|=
T Consensus 153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 23469999963 334433331 26799999999 99999998873
No 242
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.91 E-value=1.9e-05 Score=65.83 Aligned_cols=72 Identities=24% Similarity=0.256 Sum_probs=53.7
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCc-ceEEEec
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSS-IDAVHAG 255 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~-fD~V~~~ 255 (362)
.|+|+.||.|..+..+++.+. +|+++|+++..++.|+.+++-. +...++.++++|+.++. +.... +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vY--Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVY--GVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT--T-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999976 9999999999999999998876 23568999999986642 22222 7999975
No 243
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.87 E-value=5.6e-05 Score=64.71 Aligned_cols=104 Identities=16% Similarity=0.303 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEE
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVH 253 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~ 253 (362)
.+|++||+||-|-|.....+.++.+ .+-+-+|..++.++..++.--.. ..++.+..+--++. .++++.||-|.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhccccccCcceeE
Confidence 5689999999999998888887765 46678999999988887753333 56777777754432 25688999999
Q ss_pred ecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~ 284 (362)
--.--+|-.|...+.+.+.|+|||+|++-..
T Consensus 175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 7666588788889999999999999988653
No 244
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.86 E-value=0.00028 Score=61.24 Aligned_cols=107 Identities=14% Similarity=0.260 Sum_probs=73.6
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 018003 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~ 248 (362)
+...+|.+||-+|+++|.....+..- ++.+.|+++|.|+...+..-+-.++ ..|+--+.+|+.... .--+.
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhccccc
Confidence 34567899999999999999998886 5677999999999654444333333 389999999997532 11347
Q ss_pred ceEEEecccccCCCCH-HHHHHHHHhhccCCcEEEEEEEc
Q 018003 249 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 249 fD~V~~~~vl~h~~d~-~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
+|+|++.-. + ++. .-++.++...||+||.++++.-.
T Consensus 144 VDvI~~DVa-Q--p~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 144 VDVIFQDVA-Q--PDQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp EEEEEEE-S-S--TTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccEEEecCC-C--hHHHHHHHHHHHhhccCCcEEEEEEec
Confidence 999986433 1 233 45677888899999999988643
No 245
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.83 E-value=0.00011 Score=67.49 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=76.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP- 243 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p- 243 (362)
..+.+.+.+.+.+++.++|.-+|.|..+..+++..+.+.|+|+|.++.+++.+++++... ..++.++++++..+.
T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFFE 83 (305)
T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHHH
Confidence 356677778878889999999999999999998754589999999999999999988765 468999999987753
Q ss_pred ----CCCCcceEEEecccc--cCCCCHH
Q 018003 244 ----FASSSIDAVHAGAAI--HCWSSPS 265 (362)
Q Consensus 244 ----~~~~~fD~V~~~~vl--~h~~d~~ 265 (362)
....++|.|++.-.+ +++.++.
T Consensus 84 ~l~~~~~~~vDgIl~DLGvSS~Qld~~~ 111 (305)
T TIGR00006 84 HLDELLVTKIDGILVDLGVSSPQLDDPE 111 (305)
T ss_pred HHHhcCCCcccEEEEeccCCHhhcCCCC
Confidence 123569999976543 4444443
No 246
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.83 E-value=9.2e-05 Score=62.59 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=81.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~ 246 (362)
+.+...-....+++|||+|+|+|.-+...++.|. ..|+..|+.+......+-+.+.+ ...+.+...|... .+
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g---~~ 140 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG---SP 140 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC---CC
Confidence 3444444445689999999999999999888874 57999999988777777776666 5678888888765 35
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcE-EEEEEEcc
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGV-FVGTTYIV 288 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~-li~~~~~~ 288 (362)
..||+|++..++..-+--.+++. ..+.|+..|. +++-+|.+
T Consensus 141 ~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 141 PAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred cceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 67999999998765444456666 5555555555 44445443
No 247
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.78 E-value=0.00026 Score=62.62 Aligned_cols=153 Identities=11% Similarity=0.104 Sum_probs=93.5
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
+..++.+...++. ..+|+|||||.-.++..+....++..++|+|++..+++...+.+... ..+......|+..-
T Consensus 93 d~fY~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 93 DEFYDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----GVPHDARVRDLLSD 166 (251)
T ss_dssp HHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----T-CEEEEEE-TTTS
T ss_pred HHHHHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----CCCcceeEeeeecc
Confidence 3334444444333 67999999999999888777766779999999999999999988776 67888888898765
Q ss_pred CCCCCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCC
Q 018003 243 PFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG 320 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 320 (362)
+ +....|+.+..-+++.+.... ..++-+..+=.| .++++.|...- ..-... +.-.-
T Consensus 167 ~-~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL--------~gR~~g-----------m~~~y 224 (251)
T PF07091_consen 167 P-PKEPADLALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSL--------GGRNKG-----------MEQTY 224 (251)
T ss_dssp H-TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES---------------TT-----------HHHCH
T ss_pred C-CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEecccccc--------ccCccc-----------cccCH
Confidence 4 456799999998887764322 222222222223 67777776531 110000 11112
Q ss_pred HHHHHHHHHHCCCEEEEEEEecee
Q 018003 321 FDDLKRIFRQFQLVVNLKLFYGHI 344 (362)
Q Consensus 321 ~~~l~~ll~~~Gf~~v~~~~~g~~ 344 (362)
...++.++..-|+. ++...+|.-
T Consensus 225 ~~~fe~~~~~~~~~-~~~~~~~~E 247 (251)
T PF07091_consen 225 SAWFEALAAERGWI-VDRLTFGNE 247 (251)
T ss_dssp HHHHHHHCCTTCEE-EEEEEETTE
T ss_pred HHHHHHhcccCCce-eeeeecccc
Confidence 34678888888887 455555543
No 248
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.77 E-value=0.00032 Score=64.76 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=78.5
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH--Hhhc--CCCCCCCEEEEEecCCCC-CCCCCcceEE
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQE--SNFPKENFLLVRADISRL-PFASSSIDAV 252 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~--~~~~~~~~~~~~~d~~~~-p~~~~~fD~V 252 (362)
..++|-+|.|.|.-++.+.+.-...+++-+|++|+|++.+++. +... .....+++.++..|+.++ .-....||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 4689999999999999998864467999999999999999843 2221 023367899999998664 2234589999
Q ss_pred EecccccCCCCHH----------HHHHHHHhhccCCcEEEEEE
Q 018003 253 HAGAAIHCWSSPS----------TGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 253 ~~~~vl~h~~d~~----------~~l~~i~r~LkpgG~li~~~ 285 (362)
+.. ++||. .+..-+++.|+++|.+++..
T Consensus 370 IVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 370 IVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 853 35553 67888899999999998764
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.73 E-value=0.0015 Score=56.52 Aligned_cols=136 Identities=13% Similarity=0.030 Sum_probs=96.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~ 245 (362)
+..+.++++. +.++.||||-.+++..++.+.++...+++.|+++..++.|.+++... ...+++....+|....--.
T Consensus 7 L~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--~l~~~i~vr~~dgl~~l~~ 82 (226)
T COG2384 7 LTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--NLSERIDVRLGDGLAVLEL 82 (226)
T ss_pred HHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc--CCcceEEEeccCCccccCc
Confidence 4566667665 55699999999999999999999889999999999999999999886 4567888888887432223
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK 325 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 325 (362)
+..+|+|+..++=.. -....|++-.+.|+.--++++. |+ -...+++
T Consensus 83 ~d~~d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlILQ-Pn-------------------------------~~~~~LR 128 (226)
T COG2384 83 EDEIDVIVIAGMGGT--LIREILEEGKEKLKGVERLILQ-PN-------------------------------IHTYELR 128 (226)
T ss_pred cCCcCEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEEC-CC-------------------------------CCHHHHH
Confidence 457999987664221 1234555555555533233321 11 2345789
Q ss_pred HHHHHCCCEEEEEE
Q 018003 326 RIFRQFQLVVNLKL 339 (362)
Q Consensus 326 ~ll~~~Gf~~v~~~ 339 (362)
++|...+|....+.
T Consensus 129 ~~L~~~~~~I~~E~ 142 (226)
T COG2384 129 EWLSANSYEIKAET 142 (226)
T ss_pred HHHHhCCceeeeee
Confidence 99999999766543
No 250
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.72 E-value=0.00015 Score=59.39 Aligned_cols=59 Identities=24% Similarity=0.248 Sum_probs=49.8
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 241 (362)
++||+|||.|.++..+++.++..+++++|+++.+.+.++++++.+ ...++.++...+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n---~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN---NLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc---CCCcEEEEEeeeeC
Confidence 489999999999999999988778999999999999999988765 13468888777654
No 251
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.64 E-value=0.00075 Score=61.20 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCeEEEEcCccchHHHHH-HHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 178 GGNIIDASCGSGLFSRIF-AKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l-~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
+.+|+=||||.=.++..+ ++. +.+..++++|+++++++.+++.++.. .+...++.++.+|....+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccccCCeEEEecchhccccccccCCEEEEh
Confidence 459999999985554444 433 55668999999999999999877722 122678999999998776555689999876
Q ss_pred ccccCC-CCHHHHHHHHHhhccCCcEEEEEE
Q 018003 256 AAIHCW-SSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 256 ~vl~h~-~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
....-- .+..+++.++.+.++||..+++-.
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 654322 266799999999999999988764
No 252
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.0015 Score=57.22 Aligned_cols=142 Identities=15% Similarity=0.166 Sum_probs=90.6
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE-EecCCCCC---CCCCcce
Q 018003 175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV-RADISRLP---FASSSID 250 (362)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~d~~~~p---~~~~~fD 250 (362)
..++..+||+|+.||.|+..+.++|. ..|+++|..-..+..--+. .+++... ..++..+. +. +..|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~~~-~~~d 146 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPEDFT-EKPD 146 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHHcc-cCCC
Confidence 34688999999999999999999975 5899999988766654332 3455443 34555442 22 3678
Q ss_pred EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE-EccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHH
Q 018003 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT-YIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFR 329 (362)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 329 (362)
++++--++- ....+|..+..+++|+|-++... |.++ .-+......--......+---...+.+++.
T Consensus 147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQFE----------agr~~v~kkGvv~d~~~~~~v~~~i~~~~~ 213 (245)
T COG1189 147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKPQFE----------AGREQVGKKGVVRDPKLHAEVLSKIENFAK 213 (245)
T ss_pred eEEEEeehh---hHHHHHHHHHHhcCCCceEEEEecchhh----------hhhhhcCcCceecCcchHHHHHHHHHHHHh
Confidence 888866543 56788999999999999877543 3221 111111000000000122233557888999
Q ss_pred HCCCEEEEEE
Q 018003 330 QFQLVVNLKL 339 (362)
Q Consensus 330 ~~Gf~~v~~~ 339 (362)
..||+.....
T Consensus 214 ~~g~~~~gl~ 223 (245)
T COG1189 214 ELGFQVKGLI 223 (245)
T ss_pred hcCcEEeeeE
Confidence 9999876554
No 253
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=97.60 E-value=3e-05 Score=55.02 Aligned_cols=47 Identities=30% Similarity=0.565 Sum_probs=32.1
Q ss_pred ccCCeeeCCCCCCCcccccC-------------------CCCccccccCCceecCccCcccccCCc
Q 018003 67 TSKNVLACPICYKPLTWIGD-------------------SSLSIESAAGSSLQCNTCKKTYSGVGT 113 (362)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~-------------------~~~~~~~~~~~~l~C~~C~~~~~~~~g 113 (362)
..+++|+||.|+++|..... ...-...+.++.+.|++|++.|++.+|
T Consensus 3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG 68 (68)
T PF03966_consen 3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG 68 (68)
T ss_dssp GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence 46789999999998811100 000013567799999999999999776
No 254
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.53 E-value=0.00018 Score=60.38 Aligned_cols=97 Identities=18% Similarity=0.207 Sum_probs=74.6
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccc
Q 018003 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258 (362)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl 258 (362)
..+.|+|+|+|.++...++... +|++++.++...+.|.+++.-. +..+++++.+|+....| ...|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~---g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVP---GDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCC---CCcceEEEecccccccc--cccceeHHHHhh
Confidence 5899999999999988887754 9999999999999999986433 35789999999998887 457999874321
Q ss_pred cCC--CCHHHHHHHHHhhccCCcEEE
Q 018003 259 HCW--SSPSTGVAEISRVLRPGGVFV 282 (362)
Q Consensus 259 ~h~--~d~~~~l~~i~r~LkpgG~li 282 (362)
-.+ .....++..+...||-++.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 111 122356777788888888876
No 255
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.001 Score=55.86 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cCCCC--------CCC
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRL--------PFA 245 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~--------p~~ 245 (362)
.|+.+|||+||..|.++....++ +|.+-|.|+|+-.- .+...+.++++ |+.+. .++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------------EPPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------------cCCCCcccccccccCCHHHHHHHHHhCC
Confidence 46899999999999999988887 58889999998431 12455666666 66542 145
Q ss_pred CCcceEEEecccccC----CCCHH-------HHHHHHHhhccCCcEEEEEEEccC
Q 018003 246 SSSIDAVHAGAAIHC----WSSPS-------TGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h----~~d~~-------~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
+...|+|++-..=.- +.|-. .++.-....++|+|.+++-.+..+
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 678999997543111 11111 234444567889999999988764
No 256
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00013 Score=70.32 Aligned_cols=76 Identities=13% Similarity=0.222 Sum_probs=64.5
Q ss_pred CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240 (362)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~ 240 (362)
..+.....+.++++...+..+||+-||||.++..+++.-. .|+|+|+++++++.|+++++.+ +..|.+|+++-++
T Consensus 367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~N---gisNa~Fi~gqaE 441 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQIN---GISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhc---Cccceeeeecchh
Confidence 3455567788888888889999999999999999988755 9999999999999999988776 4789999999555
Q ss_pred C
Q 018003 241 R 241 (362)
Q Consensus 241 ~ 241 (362)
+
T Consensus 442 ~ 442 (534)
T KOG2187|consen 442 D 442 (534)
T ss_pred h
Confidence 4
No 257
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0063 Score=51.97 Aligned_cols=105 Identities=12% Similarity=0.158 Sum_probs=76.8
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCcc
Q 018003 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSI 249 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~f 249 (362)
+...+|.+||-+|+.+|.....+..--..+.++++|.|+.+....-..+++. .|+.-+.+|+.... .--+..
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhcccc
Confidence 3456799999999999999999888755678999999997666555444443 78889999986532 123458
Q ss_pred eEEEecccccCCCCHH---HHHHHHHhhccCCcEEEEEEEc
Q 018003 250 DAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 250 D~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~li~~~~~ 287 (362)
|+|+.- +..|. -+..++...||+||.++++.-.
T Consensus 147 Dviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231)
T COG1889 147 DVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKA 182 (231)
T ss_pred cEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence 888753 23333 4678889999999977776543
No 258
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=97.40 E-value=0.0003 Score=57.63 Aligned_cols=135 Identities=13% Similarity=0.175 Sum_probs=82.2
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHhhcCCCCCCCEEEEEecCC-CCCCCCCcceEEEec
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-CYEFVQQESNFPKENFLLVRADIS-RLPFASSSIDAVHAG 255 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-a~~~~~~~~~~~~~~~~~~~~d~~-~~p~~~~~fD~V~~~ 255 (362)
+++.+-+|...-+.-....+.|. .++.-+|.++--++. .+.++ ..+...|+. ...-..++||.+.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA-~~iltveyn~L~i~~~~~dr~----------ssi~p~df~~~~~~y~~~fD~~as~ 70 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGA-AKILTVEYNKLEIQEEFRDRL----------SSILPVDFAKNWQKYAGSFDFAASF 70 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCC-ceEEEEeecccccCccccccc----------ccccHHHHHHHHHHhhccchhhhee
Confidence 56788888886665555555553 578888876522111 11110 011112221 111235789999999
Q ss_pred ccccCCC-----CH------HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003 256 AAIHCWS-----SP------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL 324 (362)
Q Consensus 256 ~vl~h~~-----d~------~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 324 (362)
.++||+. || ...+.++.++|||||.|++..|...... .++ ..+.|....+
T Consensus 71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i-----------------~fN--ahRiYg~~rL 131 (177)
T PF03269_consen 71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAI-----------------QFN--AHRIYGPIRL 131 (177)
T ss_pred chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcce-----------------EEe--cceeecHhHH
Confidence 9999982 33 2678899999999999999999864211 111 2355666666
Q ss_pred HHHHHHCCCEEEEEEEecee
Q 018003 325 KRIFRQFQLVVNLKLFYGHI 344 (362)
Q Consensus 325 ~~ll~~~Gf~~v~~~~~g~~ 344 (362)
..++ .||+.+....+..-
T Consensus 132 ~mm~--~gfe~i~tfs~~~e 149 (177)
T PF03269_consen 132 AMMF--YGFEWIDTFSGDSE 149 (177)
T ss_pred HHHh--CCcEEEeeeccCcC
Confidence 6665 68888776555443
No 259
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.28 E-value=7.5e-05 Score=57.92 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=42.4
Q ss_pred EEEcCccchHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEEecc
Q 018003 182 IDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA 256 (362)
Q Consensus 182 LDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~~~~ 256 (362)
||+|+..|..+..+++.... .+++++|+.+. .+.+++.+++. ....++.++.++..+. .++.+++|+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------G--GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 68999999988777765322 37999999994 22222222211 1246799999998543 13357899999765
Q ss_pred cccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
. |..+.....++.+.+.|+|||++++-+
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 212234567888999999999998753
No 260
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.20 E-value=0.0021 Score=60.61 Aligned_cols=112 Identities=23% Similarity=0.237 Sum_probs=82.8
Q ss_pred cCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 018003 173 LKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS 248 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~ 248 (362)
+.+++|.+|||+.+..|.=+.+++.... .+.+++.|.+...+...+.++.+. +..+......|...+| ++. +
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl---Gv~ntiv~n~D~~ef~~~~~~~-~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL---GVTNTIVSNYDGREFPEKEFPG-S 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh---CCCceEEEccCcccccccccCc-c
Confidence 4678999999999999887666665422 358999999999999999988887 3567777788887665 444 8
Q ss_pred ceEEEec----c--cccCC------C---C-------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 249 IDAVHAG----A--AIHCW------S---S-------PSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 249 fD~V~~~----~--vl~h~------~---d-------~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
||-|+.- . ++.-- . | ..++|.....++++||+|+.+|=..
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 9999843 3 22110 0 0 1367888889999999999887543
No 261
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.17 E-value=0.0022 Score=51.93 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=57.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEecccccCCC--------CHH---HHHH
Q 018003 203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWS--------SPS---TGVA 269 (362)
Q Consensus 203 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~~~vl~h~~--------d~~---~~l~ 269 (362)
+|+|+|+-+++++..++++++. +...++.++..+=+.+. .+.+++|+++.+.. ++| .+. .+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~--~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA--GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT--T-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc--CCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHH
Confidence 5899999999999999999886 33457999988766654 23358999987643 333 232 6789
Q ss_pred HHHhhccCCcEEEEEEEcc
Q 018003 270 EISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 270 ~i~r~LkpgG~li~~~~~~ 288 (362)
.+.++|+|||++.+..+..
T Consensus 77 ~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHEEEEEEEEEEE--S
T ss_pred HHHHhhccCCEEEEEEeCC
Confidence 9999999999999988754
No 262
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.11 E-value=0.00057 Score=58.89 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=68.7
Q ss_pred CcHHHHHHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC
Q 018003 161 GPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239 (362)
Q Consensus 161 ~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~ 239 (362)
+++.....++...... ....|+|.-||.|..+..++..++ .|+++|+++.-+.-|+++++-. |. ..++.|++||+
T Consensus 77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiY-GI-~~rItFI~GD~ 152 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVY-GV-PDRITFICGDF 152 (263)
T ss_pred ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceee-cC-CceeEEEechH
Confidence 4555555655554322 356899999999999999999988 9999999999999999988776 33 45999999998
Q ss_pred CCC----CCCCCcceEEEec
Q 018003 240 SRL----PFASSSIDAVHAG 255 (362)
Q Consensus 240 ~~~----p~~~~~fD~V~~~ 255 (362)
.++ .+....+|+|..+
T Consensus 153 ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 153 LDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred HHHHHHHhhhhheeeeeecC
Confidence 653 3444456677755
No 263
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.08 E-value=0.0072 Score=59.94 Aligned_cols=130 Identities=20% Similarity=0.148 Sum_probs=94.1
Q ss_pred CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC---C-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCE
Q 018003 157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---L-FSLVVALDYSENMLKQCYEFVQQESNFPKENF 232 (362)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~ 232 (362)
+.+++|....+.+.+.+.+.+..+|+|-.||+|.++....+.. . ...++|.|+++.....|+.++--+ +... ++
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh-gi~~-~~ 243 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH-GIEG-DA 243 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh-CCCc-cc
Confidence 6788999999999999998778899999999999876665542 1 257999999999999999987665 1112 44
Q ss_pred EEEEecCCCCCC-----CCCcceEEEeccccc---CCC---------------------CH-HHHHHHHHhhccCCcEEE
Q 018003 233 LLVRADISRLPF-----ASSSIDAVHAGAAIH---CWS---------------------SP-STGVAEISRVLRPGGVFV 282 (362)
Q Consensus 233 ~~~~~d~~~~p~-----~~~~fD~V~~~~vl~---h~~---------------------d~-~~~l~~i~r~LkpgG~li 282 (362)
....+|-..-|. ..+.||.|+++--.. +.. .. ..+++++...|+|||+..
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 566666544442 236799998873321 110 01 478999999999999777
Q ss_pred EEEEcc
Q 018003 283 GTTYIV 288 (362)
Q Consensus 283 ~~~~~~ 288 (362)
+..|..
T Consensus 324 ivl~~g 329 (489)
T COG0286 324 IVLPDG 329 (489)
T ss_pred EEecCC
Confidence 766653
No 264
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.98 E-value=0.029 Score=53.44 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=86.9
Q ss_pred CCeEEEEcCccchHHHHHHHh---------------CCCCEEEEEeCCHHHHHHHHHHHhhcC-------C---CCCCC-
Q 018003 178 GGNIIDASCGSGLFSRIFAKS---------------GLFSLVVALDYSENMLKQCYEFVQQES-------N---FPKEN- 231 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~---------------~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~---~~~~~- 231 (362)
..+|+|+|||+|.++..+... .|..+|+.-|+-.+-....-+.+.... . ....+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 568999999999876544321 134577777765432221111111000 0 00011
Q ss_pred --EEEEEecCCCCCCCCCcceEEEecccccCCCC-H-------------------------------------HHHHHHH
Q 018003 232 --FLLVRADISRLPFASSSIDAVHAGAAIHCWSS-P-------------------------------------STGVAEI 271 (362)
Q Consensus 232 --~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d-~-------------------------------------~~~l~~i 271 (362)
+.-+.+.+..--||.++.+++++..+||++.. | ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222344444578999999999999999852 1 1234444
Q ss_pred HhhccCCcEEEEEEEccCCCCcch-----h-h---hHH-HHHhhhhc------ccccccccccCCHHHHHHHHHHCCCEE
Q 018003 272 SRVLRPGGVFVGTTYIVDGPFNLI-----P-F---SRL-LRQVCFLD------LKIVGFSIPVLGFDDLKRIFRQFQLVV 335 (362)
Q Consensus 272 ~r~LkpgG~li~~~~~~~~~~~~~-----~-~---~~~-~~~~~~~~------~~~~~~~~~~~s~~~l~~ll~~~Gf~~ 335 (362)
++-|.|||++++....+....... . | +.. +.+..... ........++.+.++++..+++.|.-.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 567899999999988774321110 0 1 110 11111000 011111467789999999999998743
Q ss_pred E
Q 018003 336 N 336 (362)
Q Consensus 336 v 336 (362)
+
T Consensus 304 I 304 (386)
T PLN02668 304 I 304 (386)
T ss_pred e
Confidence 3
No 265
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.94 E-value=0.0019 Score=59.45 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=63.7
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-- 243 (362)
+..+.+.+.+.+++.++|.--|.|..+..+.+..+++.++|+|-++.+++.|++++... ..++.++.+++.++.
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~ 84 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEY 84 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHH
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHH
Confidence 35667777788899999999999999999999877789999999999999999887655 678999999987753
Q ss_pred ---C-CCCcceEEEec
Q 018003 244 ---F-ASSSIDAVHAG 255 (362)
Q Consensus 244 ---~-~~~~fD~V~~~ 255 (362)
. .-..+|.|++-
T Consensus 85 l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 85 LKELNGINKVDGILFD 100 (310)
T ss_dssp HHHTTTTS-EEEEEEE
T ss_pred HHHccCCCccCEEEEc
Confidence 2 33578888864
No 266
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.92 E-value=0.0016 Score=63.00 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=64.2
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE----NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V 252 (362)
.-..|+|+.+|.|.|+.+|.+.. |+.+..-+ +.+....++ .-+-..+.=-+.++..+.+||+|
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIydR---------GLIG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYDR---------GLIGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred ceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhhc---------ccchhccchhhccCCCCcchhhe
Confidence 34689999999999999997753 33333222 223332222 00111111124456667899999
Q ss_pred EecccccCCCC---HHHHHHHHHhhccCCcEEEEEE
Q 018003 253 HAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 253 ~~~~vl~h~~d---~~~~l~~i~r~LkpgG~li~~~ 285 (362)
++.+++.+..+ ...+|-|+-|+|+|||.+++.+
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 99999877754 4688999999999999999864
No 267
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.90 E-value=0.0054 Score=56.29 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCCCC-----CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003 164 KEFELMKGYLKPVL-----GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238 (362)
Q Consensus 164 ~~~~~l~~~l~~~~-----~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d 238 (362)
..+..+.+.+.... ..++||||+|....=..|..+..+.+++|+|+++..++.|++.++.+ .....+|.++...
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N-~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN-PNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEE--
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc-cccccceEEEEcC
Confidence 34555666554322 35799999998755333333222349999999999999999999876 2446788887653
Q ss_pred CCC-----CCCCCCcceEEEecccccCC
Q 018003 239 ISR-----LPFASSSIDAVHAGAAIHCW 261 (362)
Q Consensus 239 ~~~-----~p~~~~~fD~V~~~~vl~h~ 261 (362)
-.. +....+.||+.+|+--++.-
T Consensus 163 ~~~~i~~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 163 NPDNIFDGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred CccccchhhhcccceeeEEecCCccccC
Confidence 222 22234689999998776643
No 268
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.0044 Score=50.07 Aligned_cols=119 Identities=14% Similarity=0.130 Sum_probs=80.7
Q ss_pred CCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe
Q 018003 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237 (362)
Q Consensus 158 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (362)
..+...+.++.++.++...+.++.+|+|.|.|+...+.++.+. -..+|+|+++-.+.+++-+.-+. +......|..-
T Consensus 53 YVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~-~~a~GvELNpwLVaysrl~a~R~--g~~k~trf~Rk 129 (199)
T KOG4058|consen 53 YVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL-RPAVGVELNPWLVAYSRLHAWRA--GCAKSTRFRRK 129 (199)
T ss_pred ccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC-CcCCceeccHHHHHHHHHHHHHH--hcccchhhhhh
Confidence 3444566677788888877778999999999999999888872 37899999999988887665443 34567888888
Q ss_pred cCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 238 d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~ 284 (362)
|+.+..+.+-. .|+.+.+=.-++|.. .++..-|..+..++..
T Consensus 130 dlwK~dl~dy~--~vviFgaes~m~dLe---~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 130 DLWKVDLRDYR--NVVIFGAESVMPDLE---DKLRTELPANTRVVAC 171 (199)
T ss_pred hhhhccccccc--eEEEeehHHHHhhhH---HHHHhhCcCCCeEEEE
Confidence 88877665543 344333322223333 2334445556666544
No 269
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.76 E-value=0.074 Score=48.26 Aligned_cols=166 Identities=9% Similarity=-0.046 Sum_probs=96.6
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C----
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L---- 242 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~---- 242 (362)
.+.+.+... ...|+.+|||--.-...+.. ..+..++=+|. ++.++.-++.+.+.......+..++.+|+.. +
T Consensus 73 ~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L 149 (260)
T TIGR00027 73 FLLAAVAAG-IRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAAL 149 (260)
T ss_pred HHHHHHhcC-CcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHH
Confidence 444444432 34699999998665555432 22345555554 4456655666665311235688899999862 1
Q ss_pred ---CCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccc
Q 018003 243 ---PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIP 317 (362)
Q Consensus 243 ---p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
.+..+..-++++-.++.+++.. ..+++.+.+...||+.+++.....-................. .....+ -..
T Consensus 150 ~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~ 227 (260)
T TIGR00027 150 AAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAAR-GVDGSG-LVF 227 (260)
T ss_pred HhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhh-cccccc-ccc
Confidence 1222334478888888888654 478999998888999988875543110000011111111110 012222 334
Q ss_pred cCCHHHHHHHHHHCCCEEEEE
Q 018003 318 VLGFDDLKRIFRQFQLVVNLK 338 (362)
Q Consensus 318 ~~s~~~l~~ll~~~Gf~~v~~ 338 (362)
.+++.++..+|++.||+....
T Consensus 228 ~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 228 GIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred CCChhhHHHHHHHCCCeeecC
Confidence 578999999999999988654
No 270
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.006 Score=56.27 Aligned_cols=119 Identities=14% Similarity=0.089 Sum_probs=72.4
Q ss_pred HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC--CCCC
Q 018003 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPF 244 (362)
Q Consensus 168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~p~ 244 (362)
.+......-..++|||+|.|.|.-+.++..-.|+ ..++-++.|+..-+......... ......+-..|+. .+++
T Consensus 104 ~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv---~t~~td~r~s~vt~dRl~l 180 (484)
T COG5459 104 ELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV---STEKTDWRASDVTEDRLSL 180 (484)
T ss_pred HHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc---ccccCCCCCCccchhccCC
Confidence 3333444445678999999999988777766654 35778888886555554432221 1222222223331 2333
Q ss_pred C-CCcceEEEecccccCCCCH---HHHHHHHHhhccCCcEEEEEEEccC
Q 018003 245 A-SSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 245 ~-~~~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
+ ...|++|+..+-|-|...+ ...++.+..++.|||.|+|.++...
T Consensus 181 p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 181 PAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred CccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 2 3456666665555444333 3578999999999999999987653
No 271
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.68 E-value=0.13 Score=45.45 Aligned_cols=98 Identities=18% Similarity=0.145 Sum_probs=56.6
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCC-CCCcceEEEe
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVHA 254 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~-~~~~fD~V~~ 254 (362)
.|++||=+|=.. ..+.+++..+...+++.+|+++..+++.++..++. .-+++.+..|+.. +|- -.++||+++.
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~----gl~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEE----GLPIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH----T--EEEE---TTS---TTTSS-BSEEEE
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc----CCceEEEEecccccCCHHHhcCCCEEEe
Confidence 578999999443 33444444555679999999999999999988887 4569999999955 342 2478999996
Q ss_pred cccccCCCCHHHHHHHHHhhccCCcE
Q 018003 255 GAAIHCWSSPSTGVAEISRVLRPGGV 280 (362)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~r~LkpgG~ 280 (362)
.-. +-..-...++......||..|.
T Consensus 119 DPP-yT~~G~~LFlsRgi~~Lk~~g~ 143 (243)
T PF01861_consen 119 DPP-YTPEGLKLFLSRGIEALKGEGC 143 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-
T ss_pred CCC-CCHHHHHHHHHHHHHHhCCCCc
Confidence 321 1011113678888889987773
No 272
>PRK10742 putative methyltransferase; Provisional
Probab=96.66 E-value=0.013 Score=52.18 Aligned_cols=92 Identities=14% Similarity=0.041 Sum_probs=68.2
Q ss_pred HHHHhhcCCCCCC--eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-----CC-CCCCEEEEEec
Q 018003 167 ELMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NF-PKENFLLVRAD 238 (362)
Q Consensus 167 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~-~~~~~~~~~~d 238 (362)
+.+.+.++..++. +|||.=+|.|..+..++.+|. +|+++|-++......++.++... +. ...++.++.+|
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 4667777766666 899999999999999999875 89999999998888888776620 00 01468888888
Q ss_pred CCCC-CCCCCcceEEEecccccC
Q 018003 239 ISRL-PFASSSIDAVHAGAAIHC 260 (362)
Q Consensus 239 ~~~~-p~~~~~fD~V~~~~vl~h 260 (362)
...+ .-...+||+|++--.+.|
T Consensus 154 a~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCCCC
Confidence 7543 212337999998766555
No 273
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.60 E-value=0.033 Score=48.13 Aligned_cols=119 Identities=21% Similarity=0.238 Sum_probs=69.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHhhcC------------------
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES------------------ 225 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~------------------ 225 (362)
+++-..++....+-++.|-.||.|+++-.+.-.. .-..|+|.|+++++++.|++++.-..
T Consensus 40 ~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~ 119 (246)
T PF11599_consen 40 FQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQY 119 (246)
T ss_dssp HHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHc
Confidence 3444455555556789999999999877665432 22479999999999999999873221
Q ss_pred ---------------------CCCCCCEEEEEecCCCCC-----CCCCcceEEEecccc---cCCCC-----H-HHHHHH
Q 018003 226 ---------------------NFPKENFLLVRADISRLP-----FASSSIDAVHAGAAI---HCWSS-----P-STGVAE 270 (362)
Q Consensus 226 ---------------------~~~~~~~~~~~~d~~~~p-----~~~~~fD~V~~~~vl---~h~~d-----~-~~~l~~ 270 (362)
.+......+.++|+.+.. -.....|+|+.---- -+|.. | ..+|..
T Consensus 120 ~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~ 199 (246)
T PF11599_consen 120 GKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNS 199 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHH
Confidence 223445778888987721 112346999875332 23322 2 378999
Q ss_pred HHhhccCCcEEEEE
Q 018003 271 ISRVLRPGGVFVGT 284 (362)
Q Consensus 271 i~r~LkpgG~li~~ 284 (362)
++.+|-+++++.++
T Consensus 200 l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 200 LAPVLPERSVVAVS 213 (246)
T ss_dssp HHCCS-TT-EEEEE
T ss_pred HHhhCCCCcEEEEe
Confidence 99999555555553
No 274
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.58 E-value=0.14 Score=48.36 Aligned_cols=157 Identities=19% Similarity=0.101 Sum_probs=78.1
Q ss_pred CCCeEEEEcCccchHHHHHHHh------------C----CCCEEEEEeCCHHHHHHHHHHHhhcC--CCCCCCE--EEEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKS------------G----LFSLVVALDYSENMLKQCYEFVQQES--NFPKENF--LLVR 236 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~------------~----~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~--~~~~ 236 (362)
..-+|+|+||..|.++..+... + +..+|+--|+-.+--...-+.+.... -....++ .-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4568999999999988766542 1 12478888864431111111111100 0001232 3344
Q ss_pred ecCCCCCCCCCcceEEEecccccCCCC-H-----------------------H---------------HHHHHHHhhccC
Q 018003 237 ADISRLPFASSSIDAVHAGAAIHCWSS-P-----------------------S---------------TGVAEISRVLRP 277 (362)
Q Consensus 237 ~d~~~~p~~~~~fD~V~~~~vl~h~~d-~-----------------------~---------------~~l~~i~r~Lkp 277 (362)
+.+..--+|+++.|++++..+|||+.. | . .+|+.=++-|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 666665688999999999999999842 1 1 234444567899
Q ss_pred CcEEEEEEEccCCCCcc----hhhhHHHHHhhh----hc------ccccccccccCCHHHHHHHHHHCCC
Q 018003 278 GGVFVGTTYIVDGPFNL----IPFSRLLRQVCF----LD------LKIVGFSIPVLGFDDLKRIFRQFQL 333 (362)
Q Consensus 278 gG~li~~~~~~~~~~~~----~~~~~~~~~~~~----~~------~~~~~~~~~~~s~~~l~~ll~~~Gf 333 (362)
||++++..+..+..... ......+...+. .. ........++.+.++++..+++.|-
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gs 245 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGS 245 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTS
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCC
Confidence 99999999887652111 111111111111 00 0111114677899999999998885
No 275
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.56 E-value=0.019 Score=52.25 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=71.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
..+....+.+.+.+++..+|.--|.|..+..+.+..+ .++++|+|-++.+++.|++++... ..++.++++.+..+
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l 85 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANL 85 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHH
Confidence 3456777888888899999999999999999999865 356999999999999999998776 57899999988765
Q ss_pred C-----CCCCcceEEEec
Q 018003 243 P-----FASSSIDAVHAG 255 (362)
Q Consensus 243 p-----~~~~~fD~V~~~ 255 (362)
. ..-+.+|-|+.-
T Consensus 86 ~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 86 AEALKELGIGKVDGILLD 103 (314)
T ss_pred HHHHHhcCCCceeEEEEe
Confidence 3 223467777754
No 276
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.55 E-value=0.0068 Score=52.44 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=55.4
Q ss_pred CCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----C----C
Q 018003 178 GGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----F----A 245 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~----~ 245 (362)
+..|+|+|.-.|.-+..++. .+..++|+|+|++....... ..+.+ ...+++++++||..+.. . .
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~h--p~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESH--PMSPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHTSGSS--
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhc--cccCceEEEECCCCCHHHHHHHHHhhc
Confidence 36999999999877665543 24667999999965432211 11111 11379999999987542 1 1
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
.....+|+ -.+-|.-.+..+.|+....++++|+++++.+..
T Consensus 109 ~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 109 PPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp --SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred cCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 12333444 333344456678899999999999999987543
No 277
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=96.54 E-value=0.0015 Score=40.14 Aligned_cols=36 Identities=25% Similarity=0.693 Sum_probs=25.4
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~ 109 (362)
+...||.|+..+.+.++. +. ...+.++|+.|++.|.
T Consensus 1 M~i~CP~C~~~f~v~~~~-l~---~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 1 MIITCPNCQTRFRVPDDK-LP---AGGRKVRCPKCGHVFR 36 (37)
T ss_pred CEEECCCCCceEEcCHHH-cc---cCCcEEECCCCCcEee
Confidence 457899999987765421 11 2246899999999874
No 278
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.031 Score=52.19 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=79.7
Q ss_pred hcCCCCCCeEEEEcCccchHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC---
Q 018003 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--- 244 (362)
Q Consensus 172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~--- 244 (362)
.++..|+.+|||+.+..|.=+..+.+... .+.+++=|.+...+......+... ...++.+...|+...|-
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---~~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---PSPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---CCcceeeecccceecccccc
Confidence 35667899999999999998877777643 237999999998888887777443 34555566556554441
Q ss_pred ------CCCcceEEEec------ccccCCCCH-----------------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003 245 ------ASSSIDAVHAG------AAIHCWSSP-----------------STGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 245 ------~~~~fD~V~~~------~vl~h~~d~-----------------~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
....||-|++- .++.+-++. ..+|..-.++||+||.++.+|=..
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 22368888853 223332221 156888899999999999987543
No 279
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.48 E-value=0.00082 Score=51.67 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=43.7
Q ss_pred cceEEEecccccCC--C--C--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003 248 SIDAVHAGAAIHCW--S--S--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF 321 (362)
Q Consensus 248 ~fD~V~~~~vl~h~--~--d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 321 (362)
.||+|+|..|.-++ . | ...+++.+.+.|+|||.|++.-..+.++.........+..... ... +.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~--------~i~-lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYK--------SIK-LRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHH--------H-----G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHh--------ceE-ECh
Confidence 48999998885433 1 2 2478999999999999999876544322111111122222221 222 455
Q ss_pred HHHHHHHHH--CCCEEEEEEE
Q 018003 322 DDLKRIFRQ--FQLVVNLKLF 340 (362)
Q Consensus 322 ~~l~~ll~~--~Gf~~v~~~~ 340 (362)
+.+.+.|.. .||..++...
T Consensus 72 ~~F~~~L~~~evGF~~~e~~~ 92 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEELG 92 (110)
T ss_dssp GGHHHHHTSTTT---EEEEE-
T ss_pred HHHHHHHHhcccceEEEEEcc
Confidence 678887777 6998776443
No 280
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.33 E-value=0.035 Score=49.53 Aligned_cols=112 Identities=14% Similarity=0.032 Sum_probs=70.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHH--HHHHHHhhcCCCCCCCEEEEEe---cCCCCCCCCCc-ce
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK--QCYEFVQQESNFPKENFLLVRA---DISRLPFASSS-ID 250 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~--~a~~~~~~~~~~~~~~~~~~~~---d~~~~p~~~~~-fD 250 (362)
...+|||+|+|+|..+..++... ..+|+..|+...... ..++.-....+.....+..... +.....+..+. ||
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 35689999999997776666643 348888887653322 2211111100000112222221 11111122233 99
Q ss_pred EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
+|++..++.+-..+..++..++.+|..+|.+++.++.++
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 999999999998999999999999999998888877654
No 281
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.24 Score=46.47 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=90.8
Q ss_pred CCCCCCeEEEEcCccchHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHhhcC----------CCCCCCEEEE
Q 018003 174 KPVLGGNIIDASCGSGLFSRIFAKSG--------LFSLVVALDYSENMLKQCYEFVQQES----------NFPKENFLLV 235 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~G~~~~~l~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~----------~~~~~~~~~~ 235 (362)
.......++|+|.|+|.+...+.+.. ...++.-+|+|++..+.-++.++... ..+..-.-++
T Consensus 74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~~~~~~~~~~e~~p~~~~~i~ 153 (370)
T COG1565 74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATEDLIRWVEWVEDLPKKFPGIV 153 (370)
T ss_pred cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccccchhHHHHHHhccccCceEE
Confidence 33345689999999999988776642 25689999999998888887776541 0000001111
Q ss_pred Eec--CCCCCCC------CCcceEEE----------e---------------------cccccCCCCHHHHHHHHHhhcc
Q 018003 236 RAD--ISRLPFA------SSSIDAVH----------A---------------------GAAIHCWSSPSTGVAEISRVLR 276 (362)
Q Consensus 236 ~~d--~~~~p~~------~~~fD~V~----------~---------------------~~vl~h~~d~~~~l~~i~r~Lk 276 (362)
.++ +..+|.. ..-++-++ + ..++|-.+....+++.+...|+
T Consensus 154 ~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~~~~~~~~~~~~ll~l~~~~~~~g~~~E~~~a~~~~l~~ia~~L~ 233 (370)
T COG1565 154 VSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVFSHAINELIDEALLPLDAPEAEDGYILEVSPAREALLKAIAERLE 233 (370)
T ss_pred EechhhccccceeEeccCceEEEEeeccCcccceeeccccccchhhhccCcccccccCCceeeeCHHHHHHHHHHHHHHh
Confidence 111 1112210 00011111 0 0111211223378999999999
Q ss_pred CCcEEEEEEEccCCCCc------chhhhHHHHHhhhhccc-cccc--ccccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003 277 PGGVFVGTTYIVDGPFN------LIPFSRLLRQVCFLDLK-IVGF--SIPVLGFDDLKRIFRQFQLVVNLKLFY 341 (362)
Q Consensus 277 pgG~li~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~--~~~~~s~~~l~~ll~~~Gf~~v~~~~~ 341 (362)
- |.+++.++..+.... ....+...+...+.+.- ..+. -..+.+-..++.+.+++|++...-.+.
T Consensus 234 ~-G~~l~iDYG~~~~~~~~~~r~~g~~~~~~~~h~~~~~~~~~G~aDLTahVdFt~L~~~~~~~g~~~~~~~tQ 306 (370)
T COG1565 234 R-GVFLFIDYGYPAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAAGLEVLGFKTQ 306 (370)
T ss_pred h-CeEEEEecCCcccccccccccCccHHHHHHhhccCChhhccCccceeeeecHHHHHHHHHHcCCcccchhhH
Confidence 8 888888887643222 33334444443332221 1110 123356678999999999987644433
No 282
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=96.13 E-value=0.0037 Score=38.09 Aligned_cols=35 Identities=17% Similarity=0.649 Sum_probs=24.5
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~ 108 (362)
+.+.||.|+..+.+.+.. +. .....++|+.|++.|
T Consensus 1 M~i~Cp~C~~~y~i~d~~-ip---~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 1 MIITCPNCQAKYEIDDEK-IP---PKGRKVRCSKCGHVF 35 (36)
T ss_pred CEEECCCCCCEEeCCHHH-CC---CCCcEEECCCCCCEe
Confidence 467899999987765421 21 123578999999876
No 283
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.05 E-value=0.052 Score=50.75 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=67.7
Q ss_pred cCCCCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec-CCCCCCCCCcce
Q 018003 173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-ISRLPFASSSID 250 (362)
Q Consensus 173 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-~~~~p~~~~~fD 250 (362)
....||.+|+=+|+| .|..+..+++.. ..+|+++|.+++-++.|++. ..-.++... .....--.+.||
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l---------GAd~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL---------GADHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh---------CCcEEEEcCCchhhHHhHhhCc
Confidence 455679999999988 356777777743 26999999999999999985 222333322 222221123499
Q ss_pred EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
+|+..-. ...+....+.|++||.+++.-..
T Consensus 232 ~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 9986543 44588889999999999987544
No 284
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.95 E-value=0.14 Score=48.57 Aligned_cols=98 Identities=24% Similarity=0.272 Sum_probs=67.7
Q ss_pred CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC------CCCCC-Cc
Q 018003 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR------LPFAS-SS 248 (362)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~------~p~~~-~~ 248 (362)
++.+|+=+|||+ |.++..+++.....+++.+|.+++.++.|++.... ..+.....+ ..... ..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCCC
Confidence 445999999998 88887777775557999999999999999985321 122111111 01112 26
Q ss_pred ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
+|+++-.-. . ..++..+.++++|||.+++.-....
T Consensus 239 ~D~vie~~G-----~-~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 239 ADVVIEAVG-----S-PPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred CCEEEECCC-----C-HHHHHHHHHHhcCCCEEEEEeccCC
Confidence 999884433 2 3478999999999999988765543
No 285
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.80 E-value=0.026 Score=49.12 Aligned_cols=97 Identities=24% Similarity=0.397 Sum_probs=69.8
Q ss_pred CeEEEEcCccchHHHHHHHhCC---------CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003 179 GNIIDASCGSGLFSRIFAKSGL---------FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------ 243 (362)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------ 243 (362)
.+++|+.+..|.++..+.++.. ...++++|+-+ | .+.+.+.-+++|+....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M-------------aPI~GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M-------------APIEGVIQLQGDITSASTAEAII 108 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C-------------CccCceEEeecccCCHhHHHHHH
Confidence 5899999999999999887621 11399999865 2 23578888999998742
Q ss_pred --CCCCcceEEEeccc-----ccCCCCH------HHHHHHHHhhccCCcEEEEEEEccC
Q 018003 244 --FASSSIDAVHAGAA-----IHCWSSP------STGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 244 --~~~~~fD~V~~~~v-----l~h~~d~------~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
|.....|+|+|-+. ||.+..- ..+|.-...+|||||.|+.-.+-.+
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~ 167 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR 167 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence 55568999999765 3433221 2456667789999999997655443
No 286
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.77 E-value=0.033 Score=49.27 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=53.1
Q ss_pred HHHHhhcCCCCC--CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCC------CCEEEEEec
Q 018003 167 ELMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK------ENFLLVRAD 238 (362)
Q Consensus 167 ~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~------~~~~~~~~d 238 (362)
+.+.+..+..++ .+|||.-+|-|.-+..++..|. +|+++|-|+-+....+.-++....... .+++++.+|
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 355666655544 3899999999999998887765 999999999765555433222110111 379999999
Q ss_pred CCC-CCCCCCcceEEEecccccC
Q 018003 239 ISR-LPFASSSIDAVHAGAAIHC 260 (362)
Q Consensus 239 ~~~-~p~~~~~fD~V~~~~vl~h 260 (362)
..+ ++.++.+||+|..--.+.+
T Consensus 141 ~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp CCCHCCCHSS--SEEEE--S---
T ss_pred HHHHHhhcCCCCCEEEECCCCCC
Confidence 866 4555789999998776655
No 287
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.77 E-value=0.05 Score=56.33 Aligned_cols=132 Identities=16% Similarity=0.088 Sum_probs=78.7
Q ss_pred CCCeEEEEcCccchHHHHHHHhC-------C-----CCEEEEEeCCH---HHHHHHH-----------HHHhhcC----C
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDYSE---NMLKQCY-----------EFVQQES----N 226 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~s~---~~~~~a~-----------~~~~~~~----~ 226 (362)
+.-+|+|+|-|+|.+.....+.. + ..+++++|..+ +.+..+. +..+... +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999765554321 2 24789999644 3332222 1111100 0
Q ss_pred -------CCCCCEEEEEecCCC-CCCCCCcceEEEecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCCCCcc
Q 018003 227 -------FPKENFLLVRADISR-LPFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNL 294 (362)
Q Consensus 227 -------~~~~~~~~~~~d~~~-~p~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~~~~~ 294 (362)
...-.+.++.+|+.+ ++--...||+++.-.- .--.+| ..+++++.++++|||++.-.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF-APAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC-CCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 001245567788754 2212256999986432 111234 489999999999999888322
Q ss_pred hhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEece
Q 018003 295 IPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~ 343 (362)
....+++-|.++||++.+..-+|.
T Consensus 207 -------------------------~a~~vr~~l~~~GF~v~~~~~~g~ 230 (662)
T PRK01747 207 -------------------------SAGFVRRGLQEAGFTVRKVKGFGR 230 (662)
T ss_pred -------------------------hHHHHHHHHHHcCCeeeecCCCch
Confidence 234688889999998876544443
No 288
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.64 E-value=0.17 Score=48.66 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=69.9
Q ss_pred hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C-----CC
Q 018003 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-----PF 244 (362)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-----p~ 244 (362)
.....++.+||.+|||. |..+..+++......++++|.+++.++.+++.. ...++...-.+ + .+
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~ 249 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALREL 249 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHH
Confidence 34455688999999987 888888877743236999999999988888741 12222211110 1 11
Q ss_pred -CCCcceEEEeccc-----------ccCC----CCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 245 -ASSSIDAVHAGAA-----------IHCW----SSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 245 -~~~~fD~V~~~~v-----------l~h~----~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
....+|+|+-.-. +.|. .++...+.++.+.|+|+|.++....
T Consensus 250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 2236898876421 1121 4566789999999999999988743
No 289
>PRK00420 hypothetical protein; Validated
Probab=95.62 E-value=0.0073 Score=46.78 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=23.6
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
-.||.||.|+.... .+...|++||..+...
T Consensus 24 ~~CP~Cg~pLf~lk----------~g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 24 KHCPVCGLPLFELK----------DGEVVCPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCCcceecC----------CCceECCCCCCeeeec
Confidence 56999999997522 2689999999977663
No 290
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=95.45 E-value=0.0088 Score=36.91 Aligned_cols=36 Identities=19% Similarity=0.546 Sum_probs=23.6
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~ 109 (362)
+.+.||.|+..+........ .....++|++|+..+.
T Consensus 1 M~~~CP~C~~~~~v~~~~~~----~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 1 MRIQCPNCKTSFRVVDSQLG----ANGGKVRCGKCGHVWY 36 (38)
T ss_pred CEEECCCCCCEEEeCHHHcC----CCCCEEECCCCCCEEE
Confidence 35789999997765431111 1123689999998764
No 291
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.43 E-value=0.053 Score=48.96 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=48.2
Q ss_pred CCeEEEEcCccchHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHhhcC---CCCCCCEEEEEecCCCCCCCC
Q 018003 178 GGNIIDASCGSGLFSRIFAKSG--------LFSLVVALDYSENMLKQCYEFVQQES---NFPKENFLLVRADISRLPFAS 246 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~d~~~~p~~~ 246 (362)
..+|+|+|+|+|.++..+.+.. ...+++-+|+|+.+.+.-++++.... .....++.+ ..++...|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 4699999999999998887642 13589999999999888888876520 001234555 33444433
Q ss_pred CcceEEEecccccCC
Q 018003 247 SSIDAVHAGAAIHCW 261 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~ 261 (362)
..-+|+++.++..+
T Consensus 95 -~~~~iiaNE~~DAl 108 (252)
T PF02636_consen 95 -FPGFIIANELFDAL 108 (252)
T ss_dssp -CCEEEEEESSGGGS
T ss_pred -CCEEEEEeeehhcC
Confidence 23355555554443
No 292
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.42 E-value=0.02 Score=43.86 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.6
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~ 211 (362)
+....+|+|||+|.+...|...|. .-+|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC--Ccccccccc
Confidence 456799999999999999999987 778999754
No 293
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.40 E-value=0.084 Score=46.43 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=69.8
Q ss_pred CCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHH----HHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCC
Q 018003 175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSEN----MLKQCYEFVQQESNFPKENFLLVRADISRLP---FAS 246 (362)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~----~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~ 246 (362)
.+|+.+||-+|+++|........- ++..-|+++|.|+. .+..|++ ..|+.-+.-|+.... ..-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk---------RtNiiPIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK---------RTNIIPIIEDARHPAKYRMLV 224 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc---------cCCceeeeccCCCchheeeee
Confidence 467999999999999998887775 77789999999985 4444444 378888888886431 112
Q ss_pred CcceEEEecccccCCCCHH---HHHHHHHhhccCCcEEEEEEE
Q 018003 247 SSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~li~~~~ 286 (362)
+-.|+|++. +..|. .+.-+..-.||+||.++++.-
T Consensus 225 gmVDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 225 GMVDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred eeEEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 356777653 23332 344566778999999998754
No 294
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.38 E-value=0.08 Score=50.66 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=74.3
Q ss_pred CCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCC-CEEEEEecCCCCC-CCCCcceEEEe
Q 018003 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRLP-FASSSIDAVHA 254 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~d~~~~p-~~~~~fD~V~~ 254 (362)
+.++||.=+|+|.=+..++.. .....|+.-|+|+++++..+++++.+ .... .+.+...|+..+- .....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N--~~~~~~~~v~~~DAn~ll~~~~~~fD~ID- 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN--GLEDERIEVSNMDANVLLYSRQERFDVID- 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC--T-SGCCEEEEES-HHHHHCHSTT-EEEEE-
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc--cccCceEEEehhhHHHHhhhccccCCEEE-
Confidence 458999999999877666666 33458999999999999999998876 2233 6888888875542 2467899997
Q ss_pred cccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
|.-+..|..+|..+.+.+|.||.|.++..
T Consensus 127 ---lDPfGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 127 ---LDPFGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ---E--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ---eCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence 35556788999999999999999998754
No 295
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.37 E-value=0.046 Score=49.49 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=79.5
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC--CCCCCcceEEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL--PFASSSIDAVH 253 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~--p~~~~~fD~V~ 253 (362)
..+++|-||-|.|.+.+...+.-...++.-+|++...++..++.+...- +...+++.++.||...+ ....+.||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4679999999999999888877445689999999999999988765432 33467899999986443 13467899998
Q ss_pred ecccccCCCCH---------HHHHHHHHhhccCCcEEEEEE
Q 018003 254 AGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 254 ~~~vl~h~~d~---------~~~l~~i~r~LkpgG~li~~~ 285 (362)
.--. || .....-+.+.||+||+++...
T Consensus 201 ~dss-----dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDSS-----DPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EecC-----CccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 6432 33 256778899999999998764
No 296
>PHA01634 hypothetical protein
Probab=95.24 E-value=0.15 Score=40.37 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=40.4
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 223 (362)
.+.+|+|||++.|..+.+++-+|. ..|+++|+++...+..++.++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhh
Confidence 478999999999999999998885 5899999999999999886554
No 297
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.08 E-value=0.31 Score=48.45 Aligned_cols=101 Identities=23% Similarity=0.256 Sum_probs=68.9
Q ss_pred CCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-----------C
Q 018003 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----------L 242 (362)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-----------~ 242 (362)
..++.+|+=+|+|. |..+...++.. +..|+++|.+++.++++++. ...++..|..+ +
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence 34688999999997 77666666653 34899999999999988873 22222111111 0
Q ss_pred C----------CCC--CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 243 P----------FAS--SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 243 p----------~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
. +.+ +.+|+|+.......-+.|..+.+++.+.+||||+++....
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 011 3589999877655445565556999999999999886543
No 298
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.88 E-value=0.24 Score=46.73 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=61.7
Q ss_pred CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE---ecCCCCCCCCCcc
Q 018003 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR---ADISRLPFASSSI 249 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~d~~~~p~~~~~f 249 (362)
...++.+||=+|+|. |.++..+++..-..+++++|.+++.++.+++. . .. .++. .++.+.....+.+
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-G-------a~-~vi~~~~~~~~~~~~~~g~~ 236 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-G-------AD-KLVNPQNDDLDHYKAEKGYF 236 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-C-------Cc-EEecCCcccHHHHhccCCCC
Confidence 334688999999875 66766666663223689999999988888763 1 11 1111 1121111112358
Q ss_pred eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
|+|+- ....+ ..+....++|++||++++...
T Consensus 237 D~vid-----~~G~~-~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFE-----VSGHP-SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEE-----CCCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence 88864 33333 357888999999999987753
No 299
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.81 E-value=0.15 Score=49.91 Aligned_cols=102 Identities=11% Similarity=0.163 Sum_probs=75.1
Q ss_pred CCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHH-HhhcCCCCCCCEEEEEecCCCCCCCCCcceEE
Q 018003 178 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V 252 (362)
...|+-+|+|.|.+.....+. ....+++++|-+|+++...+.+ ++.. ..++.++..|+..++.+....|++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W----~~~Vtii~~DMR~w~ap~eq~DI~ 443 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW----DNRVTIISSDMRKWNAPREQADII 443 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh----cCeeEEEeccccccCCchhhccch
Confidence 346889999999987665543 2235899999999987766552 3333 678999999999988556789998
Q ss_pred EecccccCCCCH---HHHHHHHHhhccCCcEEEEE
Q 018003 253 HAGAAIHCWSSP---STGVAEISRVLRPGGVFVGT 284 (362)
Q Consensus 253 ~~~~vl~h~~d~---~~~l~~i~r~LkpgG~li~~ 284 (362)
++ ..|..+.|- .+.|.-+.+.|||+|+.+=.
T Consensus 444 VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 444 VS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred HH-HhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 85 334444432 36799999999999987743
No 300
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=94.69 E-value=0.017 Score=45.72 Aligned_cols=25 Identities=28% Similarity=0.614 Sum_probs=21.0
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (362)
-.||.||.||+... |.+.||.|++.
T Consensus 29 ~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~ 53 (131)
T COG1645 29 KHCPKCGTPLFRKD-----------GEVFCPVCGYR 53 (131)
T ss_pred hhCcccCCcceeeC-----------CeEECCCCCce
Confidence 35999999998854 79999999953
No 301
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.67 E-value=0.14 Score=44.86 Aligned_cols=105 Identities=13% Similarity=0.102 Sum_probs=67.5
Q ss_pred ccCCCCCcHHHHHHHHhhcCC------CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC
Q 018003 155 VWGGFPGPEKEFELMKGYLKP------VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP 228 (362)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~ 228 (362)
+=...++....+..+.+.|.. .++.++||||.|.-..=-.+-.+-++.+.+|.|+++..++.|+..+..+. ..
T Consensus 50 LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~-~l 128 (292)
T COG3129 50 LCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP-GL 128 (292)
T ss_pred cCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc-ch
Confidence 334566677778888887743 24567899999875543333333233499999999999999999887652 12
Q ss_pred CCCEEEEEe-cCCC----CCCCCCcceEEEecccccC
Q 018003 229 KENFLLVRA-DISR----LPFASSSIDAVHAGAAIHC 260 (362)
Q Consensus 229 ~~~~~~~~~-d~~~----~p~~~~~fD~V~~~~vl~h 260 (362)
...+++... |-.. .--.++.||+++|+--+|-
T Consensus 129 ~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 129 ERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred hhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence 234444432 2111 1123678999999987763
No 302
>PRK11524 putative methyltransferase; Provisional
Probab=94.56 E-value=0.14 Score=47.06 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=49.7
Q ss_pred cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 018003 162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223 (362)
Q Consensus 162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~ 223 (362)
|..+++++..... .+|..|||-=+|+|..+.+..+.+. +++|+|++++..+.|++++..
T Consensus 194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence 4666677666654 3588999999999999999888876 999999999999999999754
No 303
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=94.51 E-value=0.022 Score=34.12 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=15.4
Q ss_pred CCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (362)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (362)
||.||+++...... ......+.|++||.+
T Consensus 3 C~~CG~~l~~~ip~-----gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 3 CPQCGGPLERRIPE-----GDDRERLVCPACGFI 31 (34)
T ss_dssp -TTT--B-EEE--T-----T-SS-EEEETTTTEE
T ss_pred cccccChhhhhcCC-----CCCccceECCCCCCE
Confidence 99999998764321 112457899999975
No 304
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=94.51 E-value=0.026 Score=35.90 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=20.3
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
+.||.|++.....+ ...+.+.|+.||.+...
T Consensus 1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl~e 31 (43)
T PF08271_consen 1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVLEE 31 (43)
T ss_dssp ESBTTTSSSEEEEE--------TTTTEEEETTT-BBEE-
T ss_pred CCCcCCcCCceEEc--------CCCCeEECCCCCCEeec
Confidence 57999999752221 23478999999976443
No 305
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.47 E-value=0.67 Score=42.82 Aligned_cols=105 Identities=18% Similarity=0.139 Sum_probs=70.6
Q ss_pred hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-------
Q 018003 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------- 242 (362)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------- 242 (362)
+.-..++|.+||-+|+|+ |..+...++..-..+|+.+|++++.++.|++. ... .+... ......
T Consensus 163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~------~~~~~-~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GAT------VTDPS-SHKSSPQELAELV 234 (354)
T ss_pred hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCe------EEeec-cccccHHHHHHHH
Confidence 334456799999999997 77777777765456999999999999999983 211 11111 111111
Q ss_pred --CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 243 --PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 243 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
......+|+.+..-.++ ..++.....+++||.+++..+...
T Consensus 235 ~~~~g~~~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred HhhccccCCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence 12224488887655433 457777889999999888876553
No 306
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=94.39 E-value=0.03 Score=37.38 Aligned_cols=33 Identities=18% Similarity=0.460 Sum_probs=24.2
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
++.||.|+..+..... .. ...+.|+.||..+-.
T Consensus 2 ~~~CP~CG~~iev~~~------~~-GeiV~Cp~CGaeleV 34 (54)
T TIGR01206 2 QFECPDCGAEIELENP------EL-GELVICDECGAELEV 34 (54)
T ss_pred ccCCCCCCCEEecCCC------cc-CCEEeCCCCCCEEEE
Confidence 4689999998766431 12 457899999987654
No 307
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=0.02 Score=43.96 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=23.7
Q ss_pred ccCCceecCccCcccccCCceeeeecC
Q 018003 94 AAGSSLQCNTCKKTYSGVGTHFDMTAA 120 (362)
Q Consensus 94 ~~~~~l~C~~C~~~~~~~~g~~~~~~~ 120 (362)
+.+|.+.|+.||++|++.+|+++++-.
T Consensus 94 v~EG~l~CpetG~vfpI~~GIPNMLL~ 120 (124)
T KOG1088|consen 94 VIEGELVCPETGRVFPISDGIPNMLLS 120 (124)
T ss_pred hccceEecCCCCcEeecccCCcccccC
Confidence 456899999999999999999988754
No 308
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=94.34 E-value=0.025 Score=32.79 Aligned_cols=27 Identities=30% Similarity=0.778 Sum_probs=14.6
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~ 108 (362)
-.||.|++.....+ ...+.|+.|++.+
T Consensus 3 p~Cp~C~se~~y~D----------~~~~vCp~C~~ew 29 (30)
T PF08274_consen 3 PKCPLCGSEYTYED----------GELLVCPECGHEW 29 (30)
T ss_dssp ---TTT-----EE-----------SSSEEETTTTEEE
T ss_pred CCCCCCCCcceecc----------CCEEeCCcccccC
Confidence 36999999877644 3689999999764
No 309
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.24 E-value=0.87 Score=42.14 Aligned_cols=169 Identities=10% Similarity=0.005 Sum_probs=98.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--- 243 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--- 243 (362)
+.+.+.+... -..|+-+|||--.-...+-. +....|+-+|. |+.++.=++.+.+..+.+....+++..|+..-.
T Consensus 83 ~~~~~~~~~g-~~qvViLgaGLDTRayRl~~-~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~ 159 (297)
T COG3315 83 DFVRAALDAG-IRQVVILGAGLDTRAYRLDW-PKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ 159 (297)
T ss_pred HHHHHHHHhc-ccEEEEeccccccceeecCC-CCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence 3444555543 46899999986543333222 12346666665 566666666677663333448999999998432
Q ss_pred -CC-----CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccc
Q 018003 244 -FA-----SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFS 315 (362)
Q Consensus 244 -~~-----~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (362)
+. ...-=++++-+++.+++.. .+++..|...+.||-.++.................................
T Consensus 160 ~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 239 (297)
T COG3315 160 ALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELV 239 (297)
T ss_pred HHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccce
Confidence 22 3334488888999998654 378999999999988888765422110000000000000000000111113
Q ss_pred cccCCHHHHHHHHHHCCCEEEEE
Q 018003 316 IPVLGFDDLKRIFRQFQLVVNLK 338 (362)
Q Consensus 316 ~~~~s~~~l~~ll~~~Gf~~v~~ 338 (362)
....+..++..++.+.||.....
T Consensus 240 ~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 240 YFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred eccCCHHHHHHHHHhcCEEEEec
Confidence 44466899999999999988766
No 310
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.21 E-value=0.15 Score=44.72 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=43.7
Q ss_pred CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 018003 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (362)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 219 (362)
-|...++++.+... .+|..|||.=||+|..+.+..+.+. +.+|+|+++...+.|++
T Consensus 176 kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence 35666777776664 3588999999999999999999887 99999999999998874
No 311
>PRK13699 putative methylase; Provisional
Probab=94.20 E-value=0.22 Score=44.21 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=50.4
Q ss_pred CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc
Q 018003 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224 (362)
Q Consensus 161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 224 (362)
.|....+.+..... .+|..|||-=||+|..+.+..+.+. +++|+|+++...+.+.++++..
T Consensus 148 kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 148 KPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHH
Confidence 35666666665544 3588999999999999999888876 8999999999999999988665
No 312
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=94.19 E-value=0.044 Score=38.93 Aligned_cols=50 Identities=14% Similarity=0.350 Sum_probs=35.2
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecC--ccCcccccCCceeeeecCC
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAAS 121 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~--~C~~~~~~~~g~~~~~~~~ 121 (362)
++.||.||+.-........ .+...+...+|. +||+.|...+.+...+...
T Consensus 1 mm~CP~Cg~~a~irtSr~~-s~~~~~~Y~qC~N~eCg~tF~t~es~s~tis~p 52 (72)
T PRK09678 1 MFHCPLCQHAAHARTSRYI-TDTTKERYHQCQNVNCSATFITYESVQRYIVKP 52 (72)
T ss_pred CccCCCCCCccEEEEChhc-ChhhheeeeecCCCCCCCEEEEEEEEEEEEcCC
Confidence 4789999997754443333 333666788998 8999999877766666543
No 313
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=94.07 E-value=0.097 Score=50.40 Aligned_cols=109 Identities=20% Similarity=0.074 Sum_probs=70.6
Q ss_pred CCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cC--CCCCCCC-Ccce
Q 018003 177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DI--SRLPFAS-SSID 250 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~--~~~p~~~-~~fD 250 (362)
....++|+|.|.|.-..++... ...-.++.||.+..|.......+.... ..+-.++.. -+ ..+|... ..||
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~---~~g~~~v~~~~~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS---HIGEPIVRKLVFHRQRLPIDIKNGYD 276 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh---hcCchhccccchhcccCCCCccccee
Confidence 4568889998876654444333 334479999999999999988876620 011111111 11 2245433 4599
Q ss_pred EEEecccccCCCCHH---HHHHH-HHhhccCCcEEEEEEEcc
Q 018003 251 AVHAGAAIHCWSSPS---TGVAE-ISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 251 ~V~~~~vl~h~~d~~---~~l~~-i~r~LkpgG~li~~~~~~ 288 (362)
+|++.+.++++.++. ...++ ..+..++||.+++.....
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999999999998765 23333 345678899999887654
No 314
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=94.06 E-value=0.033 Score=40.53 Aligned_cols=32 Identities=25% Similarity=0.614 Sum_probs=23.9
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
+...||.|+.+ ... .+..++|.|..||..|..
T Consensus 34 ~~~~Cp~C~~~-~Vk--------R~a~GIW~C~kCg~~fAG 65 (89)
T COG1997 34 AKHVCPFCGRT-TVK--------RIATGIWKCRKCGAKFAG 65 (89)
T ss_pred cCCcCCCCCCc-cee--------eeccCeEEcCCCCCeecc
Confidence 45789999987 222 234589999999988766
No 315
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.03 E-value=0.48 Score=44.53 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=79.2
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-CCcceEEEecc
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA 256 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~~ 256 (362)
..+|||.=+|+|.=+..++...+...++.-|+|+.+++.+++++..+ ...+...+..|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~DAN~lm~~~~~~fd~ID--- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---SGEDAEVINKDANALLHELHRAFDVID--- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---CcccceeecchHHHHHHhcCCCccEEe---
Confidence 56999999999988777777766558999999999999999998876 234455555676544322 26788885
Q ss_pred cccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
|.-+..|..++....+.++.||.+-++-..
T Consensus 127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 127 -IDPFGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred -cCCCCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 345567889999999999999999887543
No 316
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.02 E-value=0.34 Score=41.22 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=77.2
Q ss_pred CCCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-------CC
Q 018003 177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------FA 245 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-------~~ 245 (362)
++..|+|+|.-.|.-+..++. .|...+|+++|++-..+.-+... .+++.+++++..+.. ..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~eqi~~~~ 140 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIAEQIRRLK 140 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHHHHHHHHh
Confidence 356899999998876655544 36556999999997765544332 478999999987653 12
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCC
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 291 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~ 291 (362)
.+.--+.++..+-||.....+.|+-..++|.-|-++++.+.+.++.
T Consensus 141 ~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 141 NEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 3333455566666766666778888899999999999988777654
No 317
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.98 E-value=0.17 Score=46.95 Aligned_cols=123 Identities=20% Similarity=0.158 Sum_probs=85.0
Q ss_pred HHHHHHHHh-hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHH-------HHHHhhcCCCCCCCEEE
Q 018003 163 EKEFELMKG-YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQESNFPKENFLL 234 (362)
Q Consensus 163 ~~~~~~l~~-~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a-------~~~~~~~~~~~~~~~~~ 234 (362)
+..+..+.. .....+|..|+|-=.|||.++...+.-|. -|+|.|++-.++... +.++++. +....-+.+
T Consensus 193 DAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQY-g~~~~fldv 269 (421)
T KOG2671|consen 193 DAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQY-GSSSQFLDV 269 (421)
T ss_pred chhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHh-CCcchhhhe
Confidence 333444433 33456799999999999999988888775 999999999888732 3344444 222345678
Q ss_pred EEecCCCCCCC-CCcceEEEecc------------------------cccCCCCH---------HHHHHHHHhhccCCcE
Q 018003 235 VRADISRLPFA-SSSIDAVHAGA------------------------AIHCWSSP---------STGVAEISRVLRPGGV 280 (362)
Q Consensus 235 ~~~d~~~~p~~-~~~fD~V~~~~------------------------vl~h~~d~---------~~~l~~i~r~LkpgG~ 280 (362)
+.+|+...|+. ...||+|+|-- ...|.|.. ...|.-.++.|..||+
T Consensus 270 l~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggr 349 (421)
T KOG2671|consen 270 LTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGR 349 (421)
T ss_pred eeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCce
Confidence 88999888765 45799999851 11233221 1456677899999999
Q ss_pred EEEEEEcc
Q 018003 281 FVGTTYIV 288 (362)
Q Consensus 281 li~~~~~~ 288 (362)
+++..|..
T Consensus 350 lv~w~p~~ 357 (421)
T KOG2671|consen 350 LVFWLPTI 357 (421)
T ss_pred EEEecCch
Confidence 99887744
No 318
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.95 E-value=1.2 Score=42.82 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=69.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCccchH----HHHHHHh--C-CCCEEEEEeC----CHHHHHHHHHHHhhcCCCCCCCEEEE
Q 018003 167 ELMKGYLKPVLGGNIIDASCGSGLF----SRIFAKS--G-LFSLVVALDY----SENMLKQCYEFVQQESNFPKENFLLV 235 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~G~~----~~~l~~~--~-~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~~~~~~~ 235 (362)
..|++.+.....-.|+|+|.|.|.- ...|+.+ + |..++||++. +...++.+.+++.+.-....-..+|.
T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~ 179 (374)
T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH 179 (374)
T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence 4455555555667899999999863 4444443 2 4568999999 77777777776543210012233443
Q ss_pred Ee---cCCCC-----CCCCCcceEEEecccccCCCC-------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 236 RA---DISRL-----PFASSSIDAVHAGAAIHCWSS-------PSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 236 ~~---d~~~~-----p~~~~~fD~V~~~~vl~h~~d-------~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
.. +.+.+ ....+..=+|-+...|||+.+ |...+-...+.|+|.-+++ .+...
T Consensus 180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~-~E~ea 246 (374)
T PF03514_consen 180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVL-VEQEA 246 (374)
T ss_pred ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEE-EeecC
Confidence 32 22332 122333334556666898862 3444555566789985444 44433
No 319
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.91 E-value=0.13 Score=49.10 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=50.4
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
..+||||.|||.++..+++.|. ..|+++|.-..|.+.|++...++ +..+++.++.--..++
T Consensus 68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kn--g~SdkI~vInkrStev 128 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKN--GMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcC--CCccceeeecccccee
Confidence 3689999999999999999985 47999999999999999988775 5577888776555443
No 320
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=93.81 E-value=0.037 Score=45.72 Aligned_cols=40 Identities=25% Similarity=0.516 Sum_probs=24.3
Q ss_pred eeCCCCCCCcc-cccCCCCccccccCCceecCccCcccccC
Q 018003 72 LACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 72 l~CP~C~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
+.||-|+++.. .........+.......+|++||..|..-
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~ 41 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTF 41 (154)
T ss_pred CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEe
Confidence 47999999773 22211122222223348999999988773
No 321
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.77 E-value=0.11 Score=41.49 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=54.6
Q ss_pred CCEEEEEecCCC-CCCCCCcceEEEecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHh
Q 018003 230 ENFLLVRADISR-LPFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQV 304 (362)
Q Consensus 230 ~~~~~~~~d~~~-~p~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~ 304 (362)
-.+.+..+|+.+ ++--...||+|+...- ---.+| ..+++++.++++|||.+.-.+
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~Tys------------------- 90 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGF-SPAKNPELWSEELFKKLARLSKPGGTLATYS------------------- 90 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------------
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEEee-------------------
Confidence 456677778744 2322367999986542 222345 489999999999999777221
Q ss_pred hhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEecee-EEEEeeC
Q 018003 305 CFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHI-QHYIVKI 351 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~-~~~~~~k 351 (362)
....+++.|.++||.+.+.--+|.- .+..+.+
T Consensus 91 ---------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 91 ---------------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp ----------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred ---------------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 1235899999999999877766543 5555544
No 322
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.73 E-value=0.073 Score=48.11 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=63.1
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-------HHhhcCCCCCCCEEEEEecCCCCCC-CCC-
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-------FVQQESNFPKENFLLVRADISRLPF-ASS- 247 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~~~d~~~~p~-~~~- 247 (362)
.+++|||+|||.|.-...+...+. ..+...|.+...++...- .+....+....-..+...+..+.-+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 478999999999998888777763 478888888776632110 0000000001111111221101110 112
Q ss_pred -cceEEEecccccCCCCHHHH-HHHHHhhccCCcEEEEE
Q 018003 248 -SIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGGVFVGT 284 (362)
Q Consensus 248 -~fD~V~~~~vl~h~~d~~~~-l~~i~r~LkpgG~li~~ 284 (362)
.||+|.+...+.-......+ +.....+++++|+++..
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 79999999998876655555 66677788999987754
No 323
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=93.63 E-value=0.04 Score=30.85 Aligned_cols=24 Identities=25% Similarity=0.607 Sum_probs=18.3
Q ss_pred eCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (362)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~ 109 (362)
.||.|+..... ..-.|+.||+.|.
T Consensus 2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPE-------------SAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence 59999987543 3568999998764
No 324
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.34 E-value=0.65 Score=43.78 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=59.1
Q ss_pred CCCCCeEEEEcCcc-chHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEE
Q 018003 175 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252 (362)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V 252 (362)
..++.+||-+|||. |.++..++++ ....+++++|.+++-++.+++ +. .. ....+ +. ....+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~--------~~-~~~~~---~~-~~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD--------ET-YLIDD---IP-EDLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC--------ce-eehhh---hh-hccCCcEE
Confidence 45688999999886 6666665654 223489999999988887764 11 11 11111 11 11247888
Q ss_pred EecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+-.-. . ..-...+.+..++|++||++++.-.
T Consensus 227 iD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 227 FECVG--G-RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EECCC--C-CccHHHHHHHHHhCcCCcEEEEEee
Confidence 74221 0 0123468889999999999987653
No 325
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.31 E-value=0.044 Score=38.86 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=26.6
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCce
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH 114 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~ 114 (362)
++.||+|+-.+.......+ .+-.|+.|+-++..+...
T Consensus 1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGEL 37 (88)
T COG3809 1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGEL 37 (88)
T ss_pred CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchhH
Confidence 4679999998876553333 356899999998875443
No 326
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=93.25 E-value=0.093 Score=33.85 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=23.2
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
..+.||.||..+..... ...++|+.||.....
T Consensus 2 ~~y~C~~CG~~~~~~~~---------~~~~~Cp~CG~~~~~ 33 (46)
T PRK00398 2 AEYKCARCGREVELDEY---------GTGVRCPYCGYRILF 33 (46)
T ss_pred CEEECCCCCCEEEECCC---------CCceECCCCCCeEEE
Confidence 46889999998876541 137899999975443
No 327
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=93.17 E-value=0.061 Score=31.75 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=15.6
Q ss_pred eCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (362)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~ 108 (362)
-||.||++...... +...+|+.|++.+
T Consensus 5 fC~~CG~~t~~~~~---------g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG---------GWARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEEE-SS---------SS-EEESSSS-EE
T ss_pred ccCcCCccccCCCC---------cCEeECCCCcCEe
Confidence 49999998876542 3578999999753
No 328
>PRK13699 putative methylase; Provisional
Probab=93.10 E-value=0.22 Score=44.22 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=31.4
Q ss_pred EEEEecCCCC--CCCCCcceEEEecccc----cC-----C--C---C-HHHHHHHHHhhccCCcEEEE
Q 018003 233 LLVRADISRL--PFASSSIDAVHAGAAI----HC-----W--S---S-PSTGVAEISRVLRPGGVFVG 283 (362)
Q Consensus 233 ~~~~~d~~~~--p~~~~~fD~V~~~~vl----~h-----~--~---d-~~~~l~~i~r~LkpgG~li~ 283 (362)
+++++|..+. .++++++|+|+..--- .. + . + ....+.++.|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3556665443 3557777777765110 00 0 0 0 13678999999999998875
No 329
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.07 E-value=1.6 Score=36.69 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=77.5
Q ss_pred EcCccchHHHHHHHhCC-CCEEEEEeCCH--HHHHHHH---HHHhhcCCCCCCCEE-EEEecCCCCC----CCCCcceEE
Q 018003 184 ASCGSGLFSRIFAKSGL-FSLVVALDYSE--NMLKQCY---EFVQQESNFPKENFL-LVRADISRLP----FASSSIDAV 252 (362)
Q Consensus 184 iGcG~G~~~~~l~~~~~-~~~v~gvD~s~--~~~~~a~---~~~~~~~~~~~~~~~-~~~~d~~~~p----~~~~~fD~V 252 (362)
||=|.=.|+..|++... ...+++.-++. +..+... ++++.. ...++. .+..|+..+. ...+.||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L---~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL---RELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH---hhcCCccccCCCCCcccccccccCCcCCEE
Confidence 56666677778877743 45666554443 3333222 222222 012233 3445776654 356889999
Q ss_pred EecccccCCC------C---------HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccc
Q 018003 253 HAGAAIHCWS------S---------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIP 317 (362)
Q Consensus 253 ~~~~vl~h~~------d---------~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
+.++- |.. + ...+++.+.++|+++|.+.++.-....
T Consensus 80 iFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--------------------------- 130 (166)
T PF10354_consen 80 IFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--------------------------- 130 (166)
T ss_pred EEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------------------------
Confidence 98763 333 0 126788999999999999988654321
Q ss_pred cCCHHHHHHHHHHCCCEEEEEEEece
Q 018003 318 VLGFDDLKRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 318 ~~s~~~l~~ll~~~Gf~~v~~~~~g~ 343 (362)
++.-.+.++.+++||..++...+..
T Consensus 131 -y~~W~i~~lA~~~gl~l~~~~~F~~ 155 (166)
T PF10354_consen 131 -YDSWNIEELAAEAGLVLVRKVPFDP 155 (166)
T ss_pred -CccccHHHHHHhcCCEEEEEecCCH
Confidence 2333577888999999888776653
No 330
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.06 E-value=0.31 Score=44.61 Aligned_cols=68 Identities=24% Similarity=0.325 Sum_probs=52.2
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC--CCcceEEEeccc
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAA 257 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~--~~~fD~V~~~~v 257 (362)
+++|+-||.|.+...+...|. ..+.++|+++.+++..+++. +.. .+.+|+..+... .+.+|+|+...-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~--------~~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANF--------PNK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhC--------CCC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 689999999999999988874 46789999999998888753 222 567788776432 357999997643
No 331
>PHA00626 hypothetical protein
Probab=92.88 E-value=0.071 Score=35.28 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=21.6
Q ss_pred eeCCCCCCC-cccccCCCCccccccCCceecCccCccccc
Q 018003 72 LACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 72 l~CP~C~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
+.||.|++. ....+ .. ....+.+.|+.||..|..
T Consensus 1 m~CP~CGS~~Ivrcg--~c---r~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 1 MSCPKCGSGNIAKEK--TM---RGWSDDYVCCDCGYNDSK 35 (59)
T ss_pred CCCCCCCCceeeeec--ee---cccCcceEcCCCCCeech
Confidence 369999994 33221 00 012468999999987765
No 332
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=92.84 E-value=1.6 Score=43.62 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=79.3
Q ss_pred CCCCCcHHHHHHHHhhcCCC--CCCeEEEEcCccchHHHHHHHh---C-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCC
Q 018003 157 GGFPGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKS---G-LFSLVVALDYSENMLKQCYEFVQQESNFPKE 230 (362)
Q Consensus 157 ~~~~~~~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 230 (362)
+.++.|......+.+.+.+. ++..|.|.-||+|.++....+. + ....++|.+..+.+...++..+.-+ +....
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~-~~~~~ 273 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH-NIDYA 273 (501)
T ss_pred ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc-CCCcc
Confidence 34566777777777766543 5678999999999988654432 1 1246999999999999998875333 01111
Q ss_pred CEEEEEecCCC-CCC-CCCcceEEEecccc--------------------cC----CCC-HHHHHHHHHhhccCCcEEEE
Q 018003 231 NFLLVRADISR-LPF-ASSSIDAVHAGAAI--------------------HC----WSS-PSTGVAEISRVLRPGGVFVG 283 (362)
Q Consensus 231 ~~~~~~~d~~~-~p~-~~~~fD~V~~~~vl--------------------~h----~~d-~~~~l~~i~r~LkpgG~li~ 283 (362)
......+|-.. ..+ ....||.|+++--. .| ..+ -..++..+...|++||...+
T Consensus 274 t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501)
T TIGR00497 274 NFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501)
T ss_pred ccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence 22222333222 111 23457777654311 11 111 13678889999999998766
Q ss_pred EEEc
Q 018003 284 TTYI 287 (362)
Q Consensus 284 ~~~~ 287 (362)
..+.
T Consensus 354 I~~~ 357 (501)
T TIGR00497 354 VCFP 357 (501)
T ss_pred EecC
Confidence 6554
No 333
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.74 E-value=1.5 Score=39.71 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=67.9
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC---CCcceEEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAVH 253 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~---~~~fD~V~ 253 (362)
.|+.|+-+| -.-.++.+++-.+-..++..+|+++..+....+..++. +..++..+.-|+.+ |++ .+.||+.+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~---g~~~ie~~~~Dlr~-plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL---GYNNIEAFVFDLRN-PLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh---Cccchhheeehhcc-cChHHHHhhCCeee
Confidence 577899999 55566666666665569999999999999998877776 35668888889865 333 36899988
Q ss_pred ecccccCCCCHHHHHHHH-------HhhccCC---cEEEEEE
Q 018003 254 AGAAIHCWSSPSTGVAEI-------SRVLRPG---GVFVGTT 285 (362)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i-------~r~Lkpg---G~li~~~ 285 (362)
.||...+..+ ...||.. |++.++.
T Consensus 227 --------TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 227 --------TDPPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred --------cCchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 4665443333 3455554 6666654
No 334
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=92.71 E-value=0.056 Score=41.95 Aligned_cols=24 Identities=33% Similarity=0.872 Sum_probs=20.0
Q ss_pred CCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
||+|++++... .++|++|+...-.
T Consensus 1 CPvCg~~l~vt-------------~l~C~~C~t~i~G 24 (113)
T PF09862_consen 1 CPVCGGELVVT-------------RLKCPSCGTEIEG 24 (113)
T ss_pred CCCCCCceEEE-------------EEEcCCCCCEEEe
Confidence 99999998873 6999999976544
No 335
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.69 E-value=0.57 Score=46.57 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-------------
Q 018003 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR------------- 241 (362)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~------------- 241 (362)
.++.+++=+|+|. |..+..+++.. +..|+++|.+++.++.+++. ...++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeecC
Confidence 3568999999997 56665555542 34899999999988877762 12222222211
Q ss_pred ----------CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEE
Q 018003 242 ----------LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282 (362)
Q Consensus 242 ----------~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li 282 (362)
++-.-..+|+|+..-.+..-+.|.-+.+++.+.+|||++++
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 11112469999887767766777778899999999999876
No 336
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.61 E-value=3.5 Score=36.78 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=70.3
Q ss_pred CCCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC----CCCCCCc
Q 018003 177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSS 248 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~p~~~~~ 248 (362)
.+...+|+|+|+..-++.+.+ ++.-.+++.+|+|...++...+.+... .+.-.+.-+++|.+. +| ..++
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~--y~~l~v~~l~~~~~~~La~~~-~~~~ 154 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE--YPGLEVNALCGDYELALAELP-RGGR 154 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh--CCCCeEeehhhhHHHHHhccc-CCCe
Confidence 357899999998876555544 455568999999999888766655554 223345556677642 33 1222
Q ss_pred ceEEEecccccCCC-CH-HHHHHHHHhhccCCcEEEEEEE
Q 018003 249 IDAVHAGAAIHCWS-SP-STGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 249 fD~V~~~~vl~h~~-d~-~~~l~~i~r~LkpgG~li~~~~ 286 (362)
==.++...+|..+. ++ ..+|..++..|+||-.+++-+-
T Consensus 155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 22333345566653 22 4789999999999999887653
No 337
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.46 E-value=0.08 Score=35.13 Aligned_cols=28 Identities=25% Similarity=0.585 Sum_probs=22.6
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
-.|+.|+.++...+ .++.|+.|+..|..
T Consensus 6 ~~C~~Cg~~~~~~d-----------DiVvCp~CgapyHR 33 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-----------DIVVCPECGAPYHR 33 (54)
T ss_pred ccChhhCCcccCCC-----------CEEECCCCCCcccH
Confidence 46999999987544 58999999987765
No 338
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.40 E-value=1.6 Score=45.25 Aligned_cols=109 Identities=13% Similarity=0.042 Sum_probs=61.2
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHhhcCCCCCCCEEEEEecC---CCCCCCCCcceEEEe
Q 018003 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-FVQQESNFPKENFLLVRADI---SRLPFASSSIDAVHA 254 (362)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~d~---~~~p~~~~~fD~V~~ 254 (362)
..+--.|.||=.....+.+..|+..++-+|-+...-+.+-+ .+... ......++.|.= ....|++=+-=.|+.
T Consensus 484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~---~~ge~dILiGTQmiaKG~~fp~vtLVgvl~ 560 (730)
T COG1198 484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQF---ANGEADILIGTQMIAKGHDFPNVTLVGVLD 560 (730)
T ss_pred CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHH---hCCCCCeeecchhhhcCCCcccceEEEEEe
Confidence 35778899999999999999998899999987755333222 12211 012333443321 122344433335555
Q ss_pred cccccCCCCHH---HHHHHHHhhc----c--CCcEEEEEEEccCC
Q 018003 255 GAAIHCWSSPS---TGVAEISRVL----R--PGGVFVGTTYIVDG 290 (362)
Q Consensus 255 ~~vl~h~~d~~---~~l~~i~r~L----k--pgG~li~~~~~~~~ 290 (362)
.+..-+.+|.. .+++-+..+. + .-|.+++.|.+++.
T Consensus 561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 561 ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 56666667764 2333332222 1 34667778887654
No 339
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=92.33 E-value=0.13 Score=46.78 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=71.9
Q ss_pred CCeEEEEcCccchHHH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003 178 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~-~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~ 256 (362)
+..|+|+=+|.|+|+. .+...|. ..|+++|.++..++..++.++.+ ....+..++.+|-... -++...|-|..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N--~V~~r~~i~~gd~R~~-~~~~~AdrVnL-- 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEAN--NVMDRCRITEGDNRNP-KPRLRADRVNL-- 268 (351)
T ss_pred cchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhc--chHHHHHhhhcccccc-Cccccchheee--
Confidence 5789999999999998 6677664 58999999999999999887665 2234445556665443 34667777774
Q ss_pred cccCCCCHHHHHHHHHhhccCCcE-EEEEEEc
Q 018003 257 AIHCWSSPSTGVAEISRVLRPGGV-FVGTTYI 287 (362)
Q Consensus 257 vl~h~~d~~~~l~~i~r~LkpgG~-li~~~~~ 287 (362)
.-+|.-++-.-.+.++|||.|- ++-..-+
T Consensus 269 --GLlPSse~~W~~A~k~Lk~eggsilHIHen 298 (351)
T KOG1227|consen 269 --GLLPSSEQGWPTAIKALKPEGGSILHIHEN 298 (351)
T ss_pred --ccccccccchHHHHHHhhhcCCcEEEEecc
Confidence 3356666667777888888655 4433333
No 340
>PTZ00357 methyltransferase; Provisional
Probab=92.32 E-value=0.76 Score=46.63 Aligned_cols=100 Identities=11% Similarity=0.122 Sum_probs=65.3
Q ss_pred eEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHhhcCCC------CCCCEEEEEecCCCCCCC----
Q 018003 180 NIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNF------PKENFLLVRADISRLPFA---- 245 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------~~~~~~~~~~d~~~~p~~---- 245 (362)
.|+-+|+|-|.+.....+. +-..++++||-++..+.....+....... ....++++..|+..+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999987665543 44568999999976554544443221000 023589999999887432
Q ss_pred -------CCcceEEEecccccCCCCH---HHHHHHHHhhccC----CcE
Q 018003 246 -------SSSIDAVHAGAAIHCWSSP---STGVAEISRVLRP----GGV 280 (362)
Q Consensus 246 -------~~~fD~V~~~~vl~h~~d~---~~~l~~i~r~Lkp----gG~ 280 (362)
-+++|+|++ ..|.-+.|- .+.|..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 137999986 233334332 2568888888887 776
No 341
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.93 E-value=2.7 Score=39.06 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=61.8
Q ss_pred CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC------CCCC
Q 018003 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFAS 246 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------p~~~ 246 (362)
...++.+||..|+|. |..+..+++.. +.++++++.++...+.+++. .+..+..+-... ....
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~ 230 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL----------GADEVLNSLDDSPKDKKAAGLG 230 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----------CCCEEEcCCCcCHHHHHHHhcC
Confidence 345678899888763 77777776653 34799999999988887652 111111111110 1234
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+.+|+|+.... ....++++.+.|+++|.++....
T Consensus 231 ~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 231 GGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 56898874321 23568889999999999987643
No 342
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.78 E-value=4.3 Score=40.61 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=23.0
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH
Q 018003 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211 (362)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~ 211 (362)
..+--.|.|+-.....+.+..|+..+..+|-+.
T Consensus 262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~ 294 (505)
T TIGR00595 262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSDT 294 (505)
T ss_pred CeeEeecccHHHHHHHHHhhCCCCcEEEEeccc
Confidence 356667777777777777776666777777543
No 343
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=0.072 Score=43.99 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=24.9
Q ss_pred CCeeeCCCCCCCcccccCCCCc------cccccCCceecCccCccccc
Q 018003 69 KNVLACPICYKPLTWIGDSSLS------IESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 69 ~~~l~CP~C~~~l~~~~~~~~~------~~~~~~~~l~C~~C~~~~~~ 110 (362)
...-.||.|+++|.....+.+. .-......++|++||..|-.
T Consensus 95 ~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiYW~ 142 (165)
T COG1656 95 PEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIYWK 142 (165)
T ss_pred cccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccccC
Confidence 3467899999987543311110 11122346789999987654
No 344
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=91.65 E-value=0.12 Score=33.95 Aligned_cols=27 Identities=22% Similarity=0.344 Sum_probs=19.2
Q ss_pred eCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (362)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~ 109 (362)
.||.|++.+.... .+.+.|..||..+-
T Consensus 22 fCP~Cg~~~m~~~----------~~r~~C~~Cgyt~~ 48 (50)
T PRK00432 22 FCPRCGSGFMAEH----------LDRWHCGKCGYTEF 48 (50)
T ss_pred cCcCCCcchhecc----------CCcEECCCcCCEEe
Confidence 6999998532221 26899999997653
No 345
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.43 E-value=2.1 Score=40.47 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=58.4
Q ss_pred CCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeC---CHHHHHHHHHHHhhcCCCCCCCEEEEEe---cCCCCCCCCC
Q 018003 175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDY---SENMLKQCYEFVQQESNFPKENFLLVRA---DISRLPFASS 247 (362)
Q Consensus 175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~~p~~~~ 247 (362)
..++.+||-+|+|. |.++..+++.. +.++++++. ++..++.+++. ....+.. +..+.. ..+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----------Ga~~v~~~~~~~~~~~-~~~ 237 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----------GATYVNSSKTPVAEVK-LVG 237 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----------CCEEecCCccchhhhh-hcC
Confidence 34678999999875 77777676653 348999986 67677766652 1112211 111100 124
Q ss_pred cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
.+|+|+-.- ..+ ..+.+..+.|++||.+++...
T Consensus 238 ~~d~vid~~-----g~~-~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 238 EFDLIIEAT-----GVP-PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCCEEEECc-----CCH-HHHHHHHHHccCCcEEEEEec
Confidence 588887433 233 367888999999999887643
No 346
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.28 E-value=1.5 Score=40.70 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=56.4
Q ss_pred CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
++.++|=+|||. |.++..+++......++++|.+++.++.+.+. . .+ |.... ....+|+|+-.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---------~---~i--~~~~~--~~~g~Dvvid~ 207 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---------E---VL--DPEKD--PRRDYRAIYDA 207 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---------c---cc--Chhhc--cCCCCCEEEEC
Confidence 467899889875 77777777763223477889888776666531 0 11 11110 12458888743
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
...+ ..+..+.+.|+++|++++.-.
T Consensus 208 -----~G~~-~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 208 -----SGDP-SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -----CCCH-HHHHHHHHhhhcCcEEEEEee
Confidence 3333 357888999999999997654
No 347
>PRK05580 primosome assembly protein PriA; Validated
Probab=91.18 E-value=3.9 Score=42.51 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=20.9
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCC
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s 210 (362)
.+-..|.|+-.....+.+..++..+.-+|-+
T Consensus 431 ~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d 461 (679)
T PRK05580 431 DLVPVGPGTERLEEELAELFPEARILRIDRD 461 (679)
T ss_pred eeEEeeccHHHHHHHHHHhCCCCcEEEEecc
Confidence 4666677777777777776666667766644
No 348
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.16 E-value=3.8 Score=38.35 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=60.0
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceE
Q 018003 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA 251 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~ 251 (362)
....++.+||-.|+|. |.++..+++.. +.++++++.+++-++.+++. ... .++ +.... ..+.+|+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~--------Ga~-~vi--~~~~~--~~~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL--------GAA-SAG--GAYDT--PPEPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh--------CCc-eec--ccccc--CcccceE
Confidence 4556788999999764 55555565553 34899999999888888763 111 111 11111 1235787
Q ss_pred EEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
++.... .+ ..+....+.|++||++++.-.
T Consensus 227 ~i~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAP-----AG-GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence 654332 22 368889999999999987654
No 349
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.14 E-value=1.4 Score=34.74 Aligned_cols=86 Identities=26% Similarity=0.256 Sum_probs=57.4
Q ss_pred ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----C-CCCCcceEEEecccccC
Q 018003 187 GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FASSSIDAVHAGAAIHC 260 (362)
Q Consensus 187 G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p-~~~~~fD~V~~~~vl~h 260 (362)
|.|.++..+++... .+++++|.++.-++.+++. .-..++..+-.++ . .....+|+|+-.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~---------Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~----- 65 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL---------GADHVIDYSDDDFVEQIRELTGGRGVDVVIDC----- 65 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT---------TESEEEETTTSSHHHHHHHHTTTSSEEEEEES-----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh---------cccccccccccccccccccccccccceEEEEe-----
Confidence 45777777777643 7999999999999998873 1111222221111 1 223479999843
Q ss_pred CCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 261 WSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 261 ~~d~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
... ...++....+|+|+|++++.....
T Consensus 66 ~g~-~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 66 VGS-GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSS-HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cCc-HHHHHHHHHHhccCCEEEEEEccC
Confidence 333 357999999999999999876544
No 350
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.91 E-value=3.8 Score=38.74 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=59.9
Q ss_pred CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----C-CCC
Q 018003 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FAS 246 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p-~~~ 246 (362)
...++.+||-.|+|. |..+..+++......|+++|.++...+.+++. .--.++...-.+. . ...
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF---------GATHTVNSSGTDPVEAIRALTGG 243 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc---------CCceEEcCCCcCHHHHHHHHhCC
Confidence 445688999999865 66666666653222599999999988888652 1111221111110 0 112
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
..+|+|+- ....+ ..+....+.|++||++++.-
T Consensus 244 ~g~d~vid-----~~g~~-~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 244 FGADVVID-----AVGRP-ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCCEEEE-----CCCCH-HHHHHHHHHhccCCEEEEEC
Confidence 35888874 33333 35777889999999998764
No 351
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=90.75 E-value=0.23 Score=31.68 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=22.1
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~ 109 (362)
.+.|..||..+.... ...++|+.||+-..
T Consensus 2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rIl 30 (44)
T smart00659 2 IYICGECGRENEIKS----------KDVVRCRECGYRIL 30 (44)
T ss_pred EEECCCCCCEeecCC----------CCceECCCCCceEE
Confidence 478999999876542 35799999997543
No 352
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.67 E-value=3.8 Score=42.41 Aligned_cols=96 Identities=14% Similarity=0.020 Sum_probs=55.3
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v 257 (362)
+..+--.|-|+-.....+.+..|+..|.-+|-+. .++. + .....++.+.-...|...+.+.+|.....
T Consensus 430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~~----~-------~~~~~IlVGTqgaepm~~g~~~lV~ilda 497 (665)
T PRK14873 430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVDT----V-------DAGPALVVATPGAEPRVEGGYGAALLLDA 497 (665)
T ss_pred CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHHh----h-------ccCCCEEEECCCCcccccCCceEEEEEcc
Confidence 3457788888888888888888878888887542 2221 1 12455666653223333356776654332
Q ss_pred --ccCCCCH---HHHHHHHHhhc------cCCcEEEEEE
Q 018003 258 --IHCWSSP---STGVAEISRVL------RPGGVFVGTT 285 (362)
Q Consensus 258 --l~h~~d~---~~~l~~i~r~L------kpgG~li~~~ 285 (362)
+-+.+|. +.+++.+.++. +++|.+++.+
T Consensus 498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 2333443 34444444332 3468888874
No 353
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=90.62 E-value=0.14 Score=35.91 Aligned_cols=28 Identities=36% Similarity=1.018 Sum_probs=18.2
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
+.||.|+.+|...+ +.++|..|+..|..
T Consensus 2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~~~ 29 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----------GHYHCEACQKDYKK 29 (70)
T ss_dssp -B-SSS-SBEEEET-----------TEEEETTT--EEEE
T ss_pred CcCCCCCCccEEeC-----------CEEECcccccccee
Confidence 46999999988765 68888888876654
No 354
>PRK10220 hypothetical protein; Provisional
Probab=90.54 E-value=0.22 Score=38.00 Aligned_cols=31 Identities=19% Similarity=0.583 Sum_probs=24.7
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
+-.||.|.+...... ...+.|+.|++.+...
T Consensus 3 lP~CP~C~seytY~d----------~~~~vCpeC~hEW~~~ 33 (111)
T PRK10220 3 LPHCPKCNSEYTYED----------NGMYICPECAHEWNDA 33 (111)
T ss_pred CCcCCCCCCcceEcC----------CCeEECCcccCcCCcc
Confidence 356999999887654 3579999999998774
No 355
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=90.48 E-value=0.15 Score=39.41 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=24.6
Q ss_pred CCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 69 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
...-.||.||..|.--. .....||.||..|+..
T Consensus 7 GtKR~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 7 GTKRTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE 39 (108)
T ss_pred CCcccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence 34567999999875211 2578899999999884
No 356
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=90.33 E-value=0.21 Score=38.09 Aligned_cols=30 Identities=27% Similarity=0.677 Sum_probs=24.1
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
-.||.|++...... ...+.|+.|++.+...
T Consensus 3 p~CP~C~seytY~d----------g~~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 3 PPCPKCNSEYTYHD----------GTQLICPSCLYEWNEN 32 (109)
T ss_pred CcCCcCCCcceEec----------CCeeECcccccccccc
Confidence 46999999887654 3579999999998764
No 357
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=90.01 E-value=0.35 Score=31.84 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=22.7
Q ss_pred eCCCCCCCcccccCCCCccccccCCceecCccCcccccCC
Q 018003 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG 112 (362)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~ 112 (362)
-||.||..+...... ....+.|+.||..+....
T Consensus 2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~ 34 (52)
T smart00661 2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQ 34 (52)
T ss_pred CCCCCCCccccccCC-------CCCEEECCcCCCeEECCC
Confidence 499999977654311 113789999998776643
No 358
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.91 E-value=4.1 Score=38.82 Aligned_cols=99 Identities=21% Similarity=0.159 Sum_probs=60.3
Q ss_pred hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----CCC
Q 018003 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PFA 245 (362)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p~~ 245 (362)
.....++.+||=.|+|. |.++..+++..-...|+++|.+++.++.+++. .. ..++..+-.++ ...
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~--------Ga-~~~i~~~~~~~~~~i~~~~ 256 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL--------GA-TATVNAGDPNAVEQVRELT 256 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc--------CC-ceEeCCCchhHHHHHHHHh
Confidence 34455688999899875 66666666653222699999999988888652 11 11111111110 011
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
.+.+|+|+-. ...+ ..+....+.|+++|.++...
T Consensus 257 ~~g~d~vid~-----~G~~-~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 257 GGGVDYAFEM-----AGSV-PALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCCCEEEEC-----CCCh-HHHHHHHHHHhcCCEEEEEc
Confidence 2358888742 2222 45778889999999988754
No 359
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=89.74 E-value=0.19 Score=30.54 Aligned_cols=28 Identities=18% Similarity=0.516 Sum_probs=21.0
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (362)
....|+.|++.+.... .+.+.|..||++
T Consensus 7 ~~~~C~~C~~~~~~~~----------dG~~yC~~cG~~ 34 (36)
T PF11781_consen 7 PNEPCPVCGSRWFYSD----------DGFYYCDRCGHQ 34 (36)
T ss_pred CCCcCCCCCCeEeEcc----------CCEEEhhhCceE
Confidence 3456999999854433 479999999975
No 360
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.66 E-value=0.44 Score=46.38 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=77.9
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-------CCCCCcc
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-------PFASSSI 249 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-------p~~~~~f 249 (362)
.+..+|-+|-|.|.+...+....+..+++++++++.+++.|++.+.-.. ..+..++..|.... .-.+..|
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~ 371 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP 371 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence 3568899999999999998888777899999999999999998765431 12344444443221 1145678
Q ss_pred eEEEec----ccccCCCCH------HHHHHHHHhhccCCcEEEEEEEccCC
Q 018003 250 DAVHAG----AAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIVDG 290 (362)
Q Consensus 250 D~V~~~----~vl~h~~d~------~~~l~~i~r~LkpgG~li~~~~~~~~ 290 (362)
|++..- . .|-+.-| ..+|..+...|.|.|.+++....++.
T Consensus 372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 988742 2 2333222 26788899999999999988776654
No 361
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.52 E-value=0.39 Score=46.72 Aligned_cols=105 Identities=23% Similarity=0.223 Sum_probs=79.3
Q ss_pred CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC----CCCCCcceE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDA 251 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----p~~~~~fD~ 251 (362)
++.+|||.=|++|.-+...++.-+ ..++++-|.+++.++..+++++.+ .....++....|+..+ +-....||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N--~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN--GVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc--CchhhcccccchHHHHHHhccccccccce
Confidence 467899999999988777776633 357999999999999999887765 3344566667776443 333568999
Q ss_pred EEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 252 V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
|-. .-+..+..+|+...+.++.||.|.++...
T Consensus 187 IDL----DPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 187 IDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred Eec----CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 873 44456779999999999999999987543
No 362
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=89.41 E-value=0.27 Score=29.67 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=20.1
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
.-||.|+.-|....+. .....|++|+..+++.
T Consensus 2 ~FCp~C~nlL~p~~~~--------~~~~~C~~C~Y~~~~~ 33 (35)
T PF02150_consen 2 RFCPECGNLLYPKEDK--------EKRVACRTCGYEEPIS 33 (35)
T ss_dssp -BETTTTSBEEEEEET--------TTTEEESSSS-EEE-S
T ss_pred eeCCCCCccceEcCCC--------ccCcCCCCCCCccCCC
Confidence 3599999987665422 1222899999988763
No 363
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.20 E-value=1.8 Score=38.79 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
.++...+|+|+..|.++..|.+++- .|+++|--+ |.+..-. ...+.....|-.++.......|-.+|.
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVCD 277 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVCD 277 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEee
Confidence 4689999999999999999999976 999999765 3332222 567888888887764345678888876
Q ss_pred ccccCCCCHHHHHHHHHhhccCC
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPG 278 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~Lkpg 278 (362)
.| ..|..+-.-|...|..|
T Consensus 278 mV----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 278 MV----EKPARVAALIAKWLVNG 296 (358)
T ss_pred hh----cCcHHHHHHHHHHHHcc
Confidence 65 67888777777777654
No 364
>PF14353 CpXC: CpXC protein
Probab=88.99 E-value=0.22 Score=39.93 Aligned_cols=40 Identities=18% Similarity=0.442 Sum_probs=23.9
Q ss_pred eeCCCCCCCcccccCCCCccc-------cccC---CceecCccCcccccC
Q 018003 72 LACPICYKPLTWIGDSSLSIE-------SAAG---SSLQCNTCKKTYSGV 111 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~-------~~~~---~~l~C~~C~~~~~~~ 111 (362)
+.||.|+.++.......++.. .+.. ..+.|++||+.+...
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 579999996644432222211 1111 246899999987763
No 365
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=88.96 E-value=0.21 Score=31.32 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=21.6
Q ss_pred eCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
.||.|+..+...... .-....|++|+-++...
T Consensus 1 ~CP~C~~~l~~~~~~-------~~~id~C~~C~G~W~d~ 32 (41)
T PF13453_consen 1 KCPRCGTELEPVRLG-------DVEIDVCPSCGGIWFDA 32 (41)
T ss_pred CcCCCCcccceEEEC-------CEEEEECCCCCeEEccH
Confidence 499999976543311 12466899999877663
No 366
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.95 E-value=5.6 Score=36.21 Aligned_cols=98 Identities=19% Similarity=0.147 Sum_probs=59.2
Q ss_pred CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cC-CCC-C-CCCCc
Q 018003 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DI-SRL-P-FASSS 248 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~-~~~-p-~~~~~ 248 (362)
...++.+||=+|+|. |..+..+++..-...++++|.++..++.+++. ... .++.. +. ... . .....
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~--------Ga~-~~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF--------GAT-ALAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc--------CCc-EecCchhhHHHHHHHhCCCC
Confidence 344688999999875 66666666653222489999999888877763 111 11111 10 000 0 01235
Q ss_pred ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+|+|+-. ...+ ..++...+.|+|+|+++....
T Consensus 188 ~d~vid~-----~G~~-~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 188 VDVALEF-----SGAT-AAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CCEEEEC-----CCCh-HHHHHHHHHhcCCCEEEEecc
Confidence 8888742 2233 457888999999999987653
No 367
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=88.89 E-value=0.3 Score=30.59 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=18.4
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccC
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~ 105 (362)
-.||.|+.|+.... .+...|..|+
T Consensus 18 ~~Cp~C~~PL~~~k----------~g~~~Cv~C~ 41 (41)
T PF06677_consen 18 EHCPDCGTPLMRDK----------DGKIYCVSCG 41 (41)
T ss_pred CccCCCCCeeEEec----------CCCEECCCCC
Confidence 45999999998633 2577899985
No 368
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.86 E-value=2.3 Score=40.44 Aligned_cols=123 Identities=9% Similarity=0.011 Sum_probs=81.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH------hhcCCCCCCCEEEEEecC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV------QQESNFPKENFLLVRADI 239 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~~~~~~~~~d~ 239 (362)
+..+.+.+...++....|+|.|.|.....++..+....-+|+++.....+.+..+. ...-|-....++.+++++
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 34455666777889999999999999988888765556788887765444443321 111122245678888887
Q ss_pred CCCCC---CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 240 SRLPF---ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 240 ~~~p~---~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
....+ -....++|+++.+.-- ++...-+.++..-+++|-+++-..+...
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 65321 1235678888776431 3333456799999999999997766554
No 369
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.85 E-value=5.4 Score=35.42 Aligned_cols=96 Identities=24% Similarity=0.301 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----CCCCCcc
Q 018003 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PFASSSI 249 (362)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p~~~~~f 249 (362)
.++.+||..|+|. |..+..+++.. +.++++++.++...+.+++. ....++...-... ....+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKEL---------GADHVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh---------CCceeccCCcCCHHHHHHHhcCCCC
Confidence 5688999999986 66666666553 25899999998877777543 0111111110111 0123569
Q ss_pred eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
|+|+.... .+ ..+..+.+.|+++|.++.....
T Consensus 203 d~vi~~~~-----~~-~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 203 DVVIDAVG-----GP-ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CEEEECCC-----CH-HHHHHHHHhcccCCEEEEEccC
Confidence 99985432 21 4577788999999999876543
No 370
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=88.81 E-value=0.26 Score=39.58 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=28.3
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCcee
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHF 115 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~ 115 (362)
-+..||.|++.. ....+.... ..+.++|..|+..|....|+.
T Consensus 29 ~~~~cP~C~s~~-~~k~g~~~~---~~qRyrC~~C~~tf~~~~~~~ 70 (129)
T COG3677 29 TKVNCPRCKSSN-VVKIGGIRR---GHQRYKCKSCGSTFTVETGSP 70 (129)
T ss_pred ccCcCCCCCccc-eeeECCccc---cccccccCCcCcceeeeccCc
Confidence 447799999876 222112211 157899999999998866655
No 371
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=88.72 E-value=0.25 Score=28.16 Aligned_cols=22 Identities=23% Similarity=0.650 Sum_probs=11.0
Q ss_pred eCCCCCCCcccccCCCCccccccCCceecCc
Q 018003 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT 103 (362)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~ 103 (362)
.||.|++++..... +..++|.+
T Consensus 1 ~CP~C~s~l~~~~~---------ev~~~C~N 22 (28)
T PF03119_consen 1 TCPVCGSKLVREEG---------EVDIRCPN 22 (28)
T ss_dssp B-TTT--BEEE-CC---------TTCEEE--
T ss_pred CcCCCCCEeEcCCC---------CEeEECCC
Confidence 49999999875441 24678864
No 372
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=88.65 E-value=0.2 Score=31.10 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=18.6
Q ss_pred eCCCCCCCcccc-cCCCCccccccCCceecCccCccc
Q 018003 73 ACPICYKPLTWI-GDSSLSIESAAGSSLQCNTCKKTY 108 (362)
Q Consensus 73 ~CP~C~~~l~~~-~~~~~~~~~~~~~~l~C~~C~~~~ 108 (362)
.||.|+..-..- .......++.+...+.|.+|++.+
T Consensus 2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w 38 (39)
T PF01096_consen 2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW 38 (39)
T ss_dssp --SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence 699999842111 111222333444578999999865
No 373
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=88.46 E-value=0.27 Score=40.46 Aligned_cols=40 Identities=23% Similarity=0.497 Sum_probs=24.5
Q ss_pred eeeCCCCCCCcccccCCCCc------cccccCCceecCccCccccc
Q 018003 71 VLACPICYKPLTWIGDSSLS------IESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~------~~~~~~~~l~C~~C~~~~~~ 110 (362)
.-+||.|++++.......+. .-......++|+.||.+|-.
T Consensus 91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW~ 136 (147)
T PF01927_consen 91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYWE 136 (147)
T ss_pred CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEecc
Confidence 46799999977544322110 11111236899999998754
No 374
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=88.33 E-value=0.25 Score=26.72 Aligned_cols=21 Identities=24% Similarity=0.620 Sum_probs=15.6
Q ss_pred CCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (362)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (362)
||.||..+.. +.-.|+.||.-
T Consensus 2 Cp~CG~~~~~-------------~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIED-------------DAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCC-------------cCcchhhhCCc
Confidence 9999988653 34569999863
No 375
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=88.23 E-value=0.99 Score=41.62 Aligned_cols=110 Identities=11% Similarity=0.092 Sum_probs=71.7
Q ss_pred CCeEEEEcCccchHHHHHHHhC--------------------CCCEEEEEeCCH--HHHHHHHHHHhhcC----------
Q 018003 178 GGNIIDASCGSGLFSRIFAKSG--------------------LFSLVVALDYSE--NMLKQCYEFVQQES---------- 225 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~gvD~s~--~~~~~a~~~~~~~~---------- 225 (362)
..+||-||.|.|.=..+++... +...++.+|+.+ ..+......+....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999986544444321 114899999876 33443333332220
Q ss_pred ----CCCCCCEEEEEecCCCCCCCC-------CcceEEEecccccCC-----CCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 226 ----NFPKENFLLVRADISRLPFAS-------SSIDAVHAGAAIHCW-----SSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 226 ----~~~~~~~~~~~~d~~~~p~~~-------~~fD~V~~~~vl~h~-----~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
....-++.|.+.|+..+..++ ...|+|+..+.+.-+ ..-.++|..+...++||-.|++.+..
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 112346788899987765321 257888888876433 34458999999999999999887643
No 376
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=87.87 E-value=0.23 Score=32.16 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=25.4
Q ss_pred eCCCCCCCcccccCCCCccccccCCceecCc--cCcccccCC
Q 018003 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT--CKKTYSGVG 112 (362)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~--C~~~~~~~~ 112 (362)
.||.||++......... .....+...+|.+ ||+.|....
T Consensus 1 ~CP~Cg~~a~ir~S~~~-s~~~~~~Y~qC~N~~Cg~tfv~~~ 41 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQL-SPLTRELYCQCTNPECGHTFVANL 41 (47)
T ss_pred CcCCCCCeeEEEEchhh-CcceEEEEEEECCCcCCCEEEEEE
Confidence 49999997655432222 3334445779988 999887743
No 377
>PLN02740 Alcohol dehydrogenase-like
Probab=87.79 E-value=8.1 Score=36.94 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=59.9
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC--C-----CC
Q 018003 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--L-----PF 244 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~-----p~ 244 (362)
....++.+||=+|+|. |..+..+++......|+++|.+++.++.+++. .. -.++...-.+ + ..
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~--------Ga-~~~i~~~~~~~~~~~~v~~~ 264 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM--------GI-TDFINPKDSDKPVHERIREM 264 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc--------CC-cEEEecccccchHHHHHHHH
Confidence 3456788999999875 66666666653222699999999988888652 11 1122111000 0 01
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT 285 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~ 285 (362)
..+.+|+|+- ....+ ..+....+.+++| |++++..
T Consensus 265 ~~~g~dvvid-----~~G~~-~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 265 TGGGVDYSFE-----CAGNV-EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred hCCCCCEEEE-----CCCCh-HHHHHHHHhhhcCCCEEEEEc
Confidence 1225888874 33333 4577778889997 9887654
No 378
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.77 E-value=14 Score=34.51 Aligned_cols=99 Identities=13% Similarity=0.130 Sum_probs=59.7
Q ss_pred hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC---CC-CC-
Q 018003 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS---RL-PF- 244 (362)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~-p~- 244 (362)
.....++.+||=+|+|. |..+..+++.. +.+ +++++.+++..+.+++. .. -.++...-. .+ ..
T Consensus 158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~--------ga-~~~i~~~~~~~~~~~~~~ 227 (339)
T cd08239 158 RVGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL--------GA-DFVINSGQDDVQEIRELT 227 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh--------CC-CEEEcCCcchHHHHHHHh
Confidence 34555688999998864 66666666653 235 99999999888887653 11 111111100 01 01
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
....+|+|+-.- ..+ ..+....+.|+++|++++...
T Consensus 228 ~~~~~d~vid~~-----g~~-~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 228 SGAGADVAIECS-----GNT-AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCCCCCEEEECC-----CCH-HHHHHHHHHhhcCCEEEEEcC
Confidence 123689887432 222 346777889999999987643
No 379
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.69 E-value=7.8 Score=36.12 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=58.2
Q ss_pred CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec---CCCCCCCCCcceEE
Q 018003 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD---ISRLPFASSSIDAV 252 (362)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d---~~~~p~~~~~fD~V 252 (362)
++.+||-.|+|. |..+..+++......+++++.++...+.+++. . . -.++..+ +..+....+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g------~--~~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G------A--DETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C------C--CEEEcCCchhhhhhhccCCCccEE
Confidence 688999888875 66666666653212689999998887766552 1 1 1122111 11121122358998
Q ss_pred EecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
+.... . ...++++.+.|+++|+++...
T Consensus 236 ld~~g-----~-~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 236 FEASG-----A-PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EECCC-----C-HHHHHHHHHHHhcCCEEEEEe
Confidence 85432 1 235788899999999998654
No 380
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=87.65 E-value=0.55 Score=27.91 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=22.5
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~ 109 (362)
.-.|+.|+++..... ..+.+.|..|+..++
T Consensus 3 ~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~ 32 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP 32 (33)
T ss_pred ceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence 457999999876522 136899999998875
No 381
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=87.61 E-value=0.29 Score=27.34 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=16.8
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (362)
...||.||..+.. +.-.|++||.
T Consensus 2 ~~~Cp~Cg~~~~~-------------~~~fC~~CG~ 24 (26)
T PF13248_consen 2 EMFCPNCGAEIDP-------------DAKFCPNCGA 24 (26)
T ss_pred cCCCcccCCcCCc-------------ccccChhhCC
Confidence 3579999985432 4678999986
No 382
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=87.31 E-value=1.9 Score=40.78 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=33.9
Q ss_pred CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 219 (362)
+-..++|+|.|.|++++.+.-. .+..|++||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~-y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLG-YGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhc-cCceEEEeccchHHHHHHHH
Confidence 3468999999999999988764 34699999999877766654
No 383
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=87.29 E-value=0.36 Score=38.02 Aligned_cols=31 Identities=6% Similarity=0.029 Sum_probs=23.6
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
....||.||..|.--. .....|+.||..|+.
T Consensus 8 tKr~Cp~cg~kFYDLn----------k~p~vcP~cg~~~~~ 38 (129)
T TIGR02300 8 TKRICPNTGSKFYDLN----------RRPAVSPYTGEQFPP 38 (129)
T ss_pred ccccCCCcCccccccC----------CCCccCCCcCCccCc
Confidence 4567999999875321 257899999999876
No 384
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=87.22 E-value=0.28 Score=41.47 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=21.7
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
.+.||.|++.-..+. -+.. ...+-.++|.+||.+++.
T Consensus 6 y~~Cp~Cg~eev~hE--Vik~-~g~~~lvrC~eCG~V~~~ 42 (201)
T COG1326 6 YIECPSCGSEEVSHE--VIKE-RGREPLVRCEECGTVHPA 42 (201)
T ss_pred EEECCCCCcchhhHH--HHHh-cCCceEEEccCCCcEeec
Confidence 478999994322111 0000 012247899999999965
No 385
>PRK11524 putative methyltransferase; Provisional
Probab=86.99 E-value=0.52 Score=43.34 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=38.0
Q ss_pred CCEEEEEecCCCC--CCCCCcceEEEeccccc----------CC------CCHHHHHHHHHhhccCCcEEEEEE
Q 018003 230 ENFLLVRADISRL--PFASSSIDAVHAGAAIH----------CW------SSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 230 ~~~~~~~~d~~~~--p~~~~~fD~V~~~~vl~----------h~------~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
.+..++++|..+. .+++++||+|++.--.. .+ .-....+.++.++|||||.+++..
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3456788887663 35678899999852210 00 001368899999999999999863
No 386
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=86.98 E-value=0.49 Score=27.89 Aligned_cols=27 Identities=19% Similarity=0.528 Sum_probs=18.1
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~ 108 (362)
+.|..|+....... ...++|+.||+-.
T Consensus 1 Y~C~~Cg~~~~~~~----------~~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKP----------GDPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BST----------SSTSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCC----------CCcEECCcCCCeE
Confidence 36899998766433 2468999999754
No 387
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=86.56 E-value=0.42 Score=29.79 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred eCCCCCCCccc-ccCCCCccccccCCceecCccCccc
Q 018003 73 ACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTY 108 (362)
Q Consensus 73 ~CP~C~~~l~~-~~~~~~~~~~~~~~~l~C~~C~~~~ 108 (362)
.||.|+..-.. ......+.++.+.-.+.|.+|++.+
T Consensus 2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w 38 (40)
T smart00440 2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW 38 (40)
T ss_pred cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence 69999984211 0111222333444578999999865
No 388
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=86.48 E-value=2.9 Score=37.54 Aligned_cols=110 Identities=19% Similarity=0.234 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcCccchHHHHHHH---h-C-CCCEEEEEeCCH--------------------------HHHHHHHHHHhh
Q 018003 175 PVLGGNIIDASCGSGLFSRIFAK---S-G-LFSLVVALDYSE--------------------------NMLKQCYEFVQQ 223 (362)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~---~-~-~~~~v~gvD~s~--------------------------~~~~~a~~~~~~ 223 (362)
..-.+.|+|.||-.|..+..++. . + .+.++++.|--+ ..++..++++.+
T Consensus 72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~ 151 (248)
T PF05711_consen 72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR 151 (248)
T ss_dssp TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence 33467999999999976544432 1 1 334688887321 123334444433
Q ss_pred cCCCCCCCEEEEEecCCC-CC-CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 224 ESNFPKENFLLVRADISR-LP-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 224 ~~~~~~~~~~~~~~d~~~-~p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
. +....++.++.|.+.+ +| .+...+-++..-.=++ ..-..+|..+...|.|||++++-+++
T Consensus 152 ~-gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 152 Y-GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp T-TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred c-CCCcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 3 2234689999999843 33 2233333333221111 12357899999999999999986543
No 389
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=85.97 E-value=0.39 Score=35.77 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=26.0
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
++-||.||.-|......+ -..+.|+.|..++++.
T Consensus 1 m~FCP~Cgn~Live~g~~-------~~rf~C~tCpY~~~I~ 34 (105)
T KOG2906|consen 1 MLFCPTCGNMLIVESGES-------CNRFSCRTCPYVFPIS 34 (105)
T ss_pred CcccCCCCCEEEEecCCe-------EeeEEcCCCCceeeEe
Confidence 467999999887655221 3578999999999985
No 390
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=85.77 E-value=0.83 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.462 Sum_probs=18.8
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccC
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~ 105 (362)
.+.||.|++.......+.. ......++|..|+
T Consensus 5 ~v~CP~C~s~~~v~k~G~~---~~G~qryrC~~C~ 36 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGKS---PSGHQRYRCKDCR 36 (36)
T ss_pred eeeCCCCCCCCcceeCCCC---CCCCEeEecCcCC
Confidence 3679999996622221111 1123578999985
No 391
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=85.69 E-value=0.71 Score=25.20 Aligned_cols=23 Identities=22% Similarity=0.664 Sum_probs=13.7
Q ss_pred CCCCCCCcccccCCCCccccccCCceecCccC
Q 018003 74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCK 105 (362)
Q Consensus 74 CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~ 105 (362)
|-.|+.++.... ....+.|++||
T Consensus 1 C~sC~~~i~~r~---------~~v~f~CPnCG 23 (24)
T PF07754_consen 1 CTSCGRPIAPRE---------QAVPFPCPNCG 23 (24)
T ss_pred CccCCCcccCcc---------cCceEeCCCCC
Confidence 556766654322 12567888887
No 392
>PHA02768 hypothetical protein; Provisional
Probab=85.55 E-value=0.31 Score=32.60 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=26.8
Q ss_pred eeeCCCCCCCcccccCCCCccccccC-CceecCccCcccccCCcee
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAG-SSLQCNTCKKTYSGVGTHF 115 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~-~~l~C~~C~~~~~~~~g~~ 115 (362)
-+.||.||..+.... .....+... ..+.|.+|+..|.....++
T Consensus 5 ~y~C~~CGK~Fs~~~--~L~~H~r~H~k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRK--SMITHLRKHNTNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHH--HHHHHHHhcCCcccCCcccceecccceeE
Confidence 468999999765443 111111222 2779999999887654444
No 393
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.48 E-value=1 Score=43.14 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEE
Q 018003 219 EFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVG 283 (362)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~ 283 (362)
+.++.. .+++.++.+++.+.- .+++++|.++....++++++.. +.++++.+.++|||+++.
T Consensus 268 ~~lr~~----~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 268 EALRAR----LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW 332 (380)
T ss_pred HHHhcC----CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE
No 394
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.44 E-value=3.5 Score=37.33 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=44.3
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003 175 PVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP 243 (362)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p 243 (362)
..+...++|+|||.|.++.+++... ....++.||-...-. .+..++... .....+.-+..|+.++.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~--~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKD--ESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhcc--CCCCceEEEEEEeeccc
Confidence 3456799999999999999998875 445899999865333 333333333 00135667777777654
No 395
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=85.29 E-value=0.41 Score=40.74 Aligned_cols=35 Identities=20% Similarity=0.477 Sum_probs=25.8
Q ss_pred ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (362)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (362)
.......+.||.|+..+.+.. .....+.|+.||..
T Consensus 111 ~e~~~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~~ 145 (178)
T PRK06266 111 EEENNMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGEM 145 (178)
T ss_pred hccCCCEEECCCCCcEEeHHH--------HhhcCCcCCCCCCC
Confidence 344557899999998776543 23458999999964
No 396
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.29 E-value=12 Score=35.16 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=67.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec----CCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD----ISR 241 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d----~~~ 241 (362)
....+-.+.++|.++.-+|||. |.....-++..-...++++|+++.-++.|++. .-.+++... +.+
T Consensus 175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f---------GAT~~vn~~~~~~vv~ 245 (366)
T COG1062 175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF---------GATHFVNPKEVDDVVE 245 (366)
T ss_pred HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc---------CCceeecchhhhhHHH
Confidence 3455556677899999999986 65555544443345899999999999999984 333343331 110
Q ss_pred --CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 242 --LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 242 --~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
...-++..|.+ ++...+.. .++.....+.++|..++.-.
T Consensus 246 ~i~~~T~gG~d~~-----~e~~G~~~-~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 246 AIVELTDGGADYA-----FECVGNVE-VMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred HHHHhcCCCCCEE-----EEccCCHH-HHHHHHHHHhcCCeEEEEec
Confidence 01223345655 34444554 67888888888999887644
No 397
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=85.13 E-value=0.44 Score=39.22 Aligned_cols=39 Identities=21% Similarity=0.612 Sum_probs=25.1
Q ss_pred ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (362)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~ 108 (362)
..-..+.||.|+..+........ .+ ..+.+.|+.||..-
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea~~~-~d--~~~~f~Cp~Cg~~l 133 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEANQL-LD--MDGTFTCPRCGEEL 133 (147)
T ss_pred cCCcEEECcCCCCEeeHHHHHHh-cC--CCCcEECCCCCCEE
Confidence 34567999999987665331111 11 24569999999754
No 398
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=85.02 E-value=0.52 Score=34.94 Aligned_cols=32 Identities=28% Similarity=0.638 Sum_probs=22.0
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
..+.||.|+..-... ...++|.|..|+..+..
T Consensus 34 ~ky~Cp~Cgk~~vkR---------~a~GIW~C~~C~~~~AG 65 (90)
T PF01780_consen 34 AKYTCPFCGKTSVKR---------VATGIWKCKKCGKKFAG 65 (90)
T ss_dssp S-BEESSSSSSEEEE---------EETTEEEETTTTEEEE-
T ss_pred CCCcCCCCCCceeEE---------eeeEEeecCCCCCEEeC
Confidence 458899999854221 23479999999987665
No 399
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.87 E-value=19 Score=31.35 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=61.6
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C-----
Q 018003 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (362)
Q Consensus 178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~----- 244 (362)
+++||-.|++.|. +...+.+.|. +|++++-+++..+...+.+... .++.++.+|+.+.. +
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~ 77 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEKAAK 77 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHHHHH
Confidence 5689999986432 2334444555 9999999887666554443322 36788889987532 0
Q ss_pred CCCcceEEEecccccCCC-----------------CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003 245 ASSSIDAVHAGAAIHCWS-----------------SPSTGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~-----------------d~~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
.-+.+|.++......... -+..+++.+.+.++++|.+++....
T Consensus 78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 013468777655421110 1123466666777888887776543
No 400
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=84.77 E-value=0.4 Score=39.94 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=25.9
Q ss_pred ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (362)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (362)
....-..+.||.|+..+.+.. .....+.|+.||..
T Consensus 103 ~e~~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~ 137 (158)
T TIGR00373 103 FETNNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM 137 (158)
T ss_pred hccCCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence 445567899999998776544 23357999999975
No 401
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=84.59 E-value=14 Score=35.64 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=61.0
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe---cCCC-CC--CC
Q 018003 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-LP--FA 245 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~-~p--~~ 245 (362)
....++.+||=.|+|. |..+..+++..-...++.+|.+++.++.+++. ... .+... +... +. ..
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~--------Ga~-~v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF--------GCE-TVDLSKDATLPEQIEQILG 251 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc--------CCe-EEecCCcccHHHHHHHHcC
Confidence 3445678888788875 66666666653223466778888888888763 111 11111 1100 00 11
Q ss_pred CCcceEEEecccccC--------CCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 246 SSSIDAVHAGAAIHC--------WSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h--------~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
...+|+|+-.-.-.. ..++...+++..+++++||++++.-.
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 235888874332110 01223579999999999999988654
No 402
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.42 E-value=7.8 Score=37.62 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=61.1
Q ss_pred HHHHhhcCC-CCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003 167 ELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF 244 (362)
Q Consensus 167 ~~l~~~l~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~ 244 (362)
+.+.+.... .+|.+|+=+|+|. |......++. .+.+|+.+|.++..++.|++. ..... +..+.
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~R~~~A~~~----------G~~~~--~~~e~-- 254 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPICALQAAME----------GYEVM--TMEEA-- 254 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChhhHHHHHhc----------CCEEc--cHHHH--
Confidence 444544432 4688999999997 6655555443 234899999999887777652 12221 11111
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
-...|+|+..- ..+..+-.+..+.+|+||+++...
T Consensus 255 -v~~aDVVI~at-----G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 255 -VKEGDIFVTTT-----GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred -HcCCCEEEECC-----CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 13479888542 334433344589999999998765
No 403
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=84.35 E-value=0.79 Score=30.29 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=21.5
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
+.||+||..-.... ..+..+..=.+.|+.|...-.+
T Consensus 5 i~CP~CgnKTR~ki---r~DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 5 ILCPICGNKTRLKI---REDTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred EECCCCCCccceee---ecCceeccccccCCCCCceEEE
Confidence 67999997432221 1122223346899999986655
No 404
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=84.32 E-value=0.67 Score=28.72 Aligned_cols=31 Identities=13% Similarity=0.314 Sum_probs=21.0
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (362)
-.+.||.|+..+...... .......|+.||.
T Consensus 4 Y~y~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~ 34 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKI------SDDPLATCPECGG 34 (41)
T ss_pred EEEEcCCCCCEEEEEEec------CCCCCCCCCCCCC
Confidence 457899999976543311 1135788999997
No 405
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.27 E-value=4 Score=37.74 Aligned_cols=98 Identities=22% Similarity=0.238 Sum_probs=71.6
Q ss_pred CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003 177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~ 255 (362)
++.+|.-+|.|. |.....++- +-+..|+-+|+|.+.+++....+ ..++.........+.-.-.+.|+|+..
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~-glgA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAI-GLGADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCccEEEECCccccchHHHHHh-ccCCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 346788899886 666655544 34569999999998888877654 234566555554443233468999877
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEE
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFV 282 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li 282 (362)
-.+---..|.-..+++.+.+|||++++
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEE
Confidence 666666789999999999999999887
No 406
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=84.24 E-value=8.6 Score=36.48 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=53.7
Q ss_pred CCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-ecCCCCCCCCCcceEEE
Q 018003 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVH 253 (362)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~p~~~~~fD~V~ 253 (362)
.++.+||-.|+|. |.++..+++.. +.++++++.+++....+.+.+. . ..++. .+...+.-..+.+|+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~G-------a-~~vi~~~~~~~~~~~~~~~D~vi 252 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLG-------A-DSFLVSTDPEKMKAAIGTMDYII 252 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCC-------C-cEEEcCCCHHHHHhhcCCCCEEE
Confidence 4678888899875 76766666653 3478888887654333322211 1 11111 01001110112478777
Q ss_pred ecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
- ....+ ..+.+..+.|++||+++...
T Consensus 253 d-----~~g~~-~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 253 D-----TVSAV-HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred E-----CCCCH-HHHHHHHHHhcCCcEEEEeC
Confidence 3 33333 35788899999999998764
No 407
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=84.00 E-value=0.57 Score=38.06 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=25.3
Q ss_pred eeCCCCCCCcccccCCCCc-cccccCCceecCccCccccc
Q 018003 72 LACPICYKPLTWIGDSSLS-IESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~-~~~~~~~~l~C~~C~~~~~~ 110 (362)
+.||.|+++-....++... ++......-.|++||.-|..
T Consensus 1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTT 40 (156)
T COG1327 1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTT 40 (156)
T ss_pred CCCCCCCCCCCeeeecccccccchhhhhhcccccccccch
Confidence 4699999965543333332 33344456689999988766
No 408
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=83.88 E-value=1.1 Score=34.01 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=25.1
Q ss_pred ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
+.+....+.||.|+.. .... .. +. ......|++||..+..
T Consensus 15 k~klpt~f~CP~Cge~-~v~v--~~--~k-~~~h~~C~~CG~y~~~ 54 (99)
T PRK14892 15 KPKLPKIFECPRCGKV-SISV--KI--KK-NIAIITCGNCGLYTEF 54 (99)
T ss_pred ccCCCcEeECCCCCCe-Eeee--ec--CC-CcceEECCCCCCccCE
Confidence 4455578999999953 2210 00 00 2467899999987665
No 409
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=83.74 E-value=0.66 Score=40.34 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--
Q 018003 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-- 242 (362)
Q Consensus 165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-- 242 (362)
....+.+++.+.+++..+|.--|.|..+..+.++.+...++++|-+|-+-+.|+...... ..+.+..+.+.+..+
T Consensus 31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el---~~~~l~a~Lg~Fs~~~~ 107 (303)
T KOG2782|consen 31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL---MHPTLKAVLGNFSYIKS 107 (303)
T ss_pred ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh---cchhHHHHHhhhHHHHH
Confidence 356778899999999999999999999999999988888999999998877777654322 122333333443332
Q ss_pred -----CCCCCcceEEEeccccc
Q 018003 243 -----PFASSSIDAVHAGAAIH 259 (362)
Q Consensus 243 -----p~~~~~fD~V~~~~vl~ 259 (362)
.+.+.++|-|++.....
T Consensus 108 l~~~~gl~~~~vDGiLmDlGcS 129 (303)
T KOG2782|consen 108 LIADTGLLDVGVDGILMDLGCS 129 (303)
T ss_pred HHHHhCCCcCCcceEEeecCcc
Confidence 24577889888765543
No 410
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=83.73 E-value=1.3 Score=29.69 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=26.4
Q ss_pred cccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003 66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (362)
Q Consensus 66 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~ 109 (362)
......+.|-.|++...+.. ...++|..||+-..
T Consensus 15 r~~~miYiCgdC~~en~lk~----------~D~irCReCG~RIl 48 (62)
T KOG3507|consen 15 RTATMIYICGDCGQENTLKR----------GDVIRCRECGYRIL 48 (62)
T ss_pred CcccEEEEeccccccccccC----------CCcEehhhcchHHH
Confidence 55778899999999876654 24899999997543
No 411
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=83.59 E-value=20 Score=33.42 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=68.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHhhcCCCCCCCEEEEEe-cCCCCC
Q 018003 167 ELMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENML-KQCYEFVQQESNFPKENFLLVRA-DISRLP 243 (362)
Q Consensus 167 ~~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~~~-d~~~~p 243 (362)
+.....++..++.+|+-+|+|. |..............++.+|.+++.. +.+++. . ...+.. +....
T Consensus 167 ~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~---------g-~~~~~~~~~~~~- 235 (311)
T cd05213 167 ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL---------G-GNAVPLDELLEL- 235 (311)
T ss_pred HHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc---------C-CeEEeHHHHHHH-
Confidence 3334444444688999999986 55443333331124899999997654 344431 1 122221 11111
Q ss_pred CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD 323 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 323 (362)
-...|+|+..-.-.+ +...+..+.+..+.+|.+++-..++.. ..+.... . + ....++.++
T Consensus 236 --l~~aDvVi~at~~~~---~~~~~~~~~~~~~~~~~~viDlavPrd---i~~~v~~----------l-~-~v~l~~vDd 295 (311)
T cd05213 236 --LNEADVVISATGAPH---YAKIVERAMKKRSGKPRLIVDLAVPRD---IEPEVGE----------L-E-GVRLYTIDD 295 (311)
T ss_pred --HhcCCEEEECCCCCc---hHHHHHHHHhhCCCCCeEEEEeCCCCC---Cchhhcc----------C-C-CcEEEEHHH
Confidence 134799998765443 233344444333335666665544332 1121111 0 1 355678888
Q ss_pred HHHHHHH
Q 018003 324 LKRIFRQ 330 (362)
Q Consensus 324 l~~ll~~ 330 (362)
|+.+.++
T Consensus 296 l~~~~~~ 302 (311)
T cd05213 296 LEEVVEE 302 (311)
T ss_pred hHHHHHH
Confidence 8877664
No 412
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.05 E-value=0.61 Score=35.25 Aligned_cols=28 Identities=32% Similarity=0.840 Sum_probs=21.3
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
....||+|+..+.. ..++|++|+..-..
T Consensus 5 ~~~~cPvcg~~~iV-------------TeL~c~~~etTVrg 32 (122)
T COG3877 5 VINRCPVCGRKLIV-------------TELKCSNCETTVRG 32 (122)
T ss_pred CCCCCCccccccee-------------EEEecCCCCceEec
Confidence 35679999987665 46999999976443
No 413
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.98 E-value=14 Score=28.29 Aligned_cols=86 Identities=19% Similarity=0.098 Sum_probs=53.4
Q ss_pred CccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----CCCCcceEEEeccccc
Q 018003 186 CGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVHAGAAIH 259 (362)
Q Consensus 186 cG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~~~~~fD~V~~~~vl~ 259 (362)
||.|.++..+++.. ....++.+|.+++.++.+++. .+.++.+|..+.. ..-...|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence 44455555554431 123899999999998888763 4779999997642 12345777776442
Q ss_pred CCCCHH--HHHHHHHhhccCCcEEEEEEE
Q 018003 260 CWSSPS--TGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 260 h~~d~~--~~l~~i~r~LkpgG~li~~~~ 286 (362)
+.. ..+....+-+.|...++....
T Consensus 72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 ---DDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 333 344555667778877776553
No 414
>PRK12495 hypothetical protein; Provisional
Probab=82.77 E-value=0.75 Score=39.84 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=25.0
Q ss_pred ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
.......|+.||.|+... .+..+|+.|+..+-.
T Consensus 38 atmsa~hC~~CG~PIpa~-----------pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 38 ATMTNAHCDECGDPIFRH-----------DGQEFCPTCQQPVTE 70 (226)
T ss_pred cccchhhcccccCcccCC-----------CCeeECCCCCCcccc
Confidence 344556799999998732 378999999987654
No 415
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=82.64 E-value=0.82 Score=35.10 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=21.3
Q ss_pred eCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
-||.||..|.... +.+.|+.|+..+..
T Consensus 2 fC~~Cg~~l~~~~-----------~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMTPKN-----------GVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccccCC-----------CeEECcCCCCcccc
Confidence 5999999886532 58999999987654
No 416
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=82.49 E-value=0.81 Score=38.69 Aligned_cols=28 Identities=32% Similarity=0.665 Sum_probs=22.6
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
-.|+.|+++|...+ ..+.|++||..-..
T Consensus 150 A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tEkR 177 (188)
T COG1096 150 ARCSRCRAPLVKKG-----------NMLKCPNCGNTEKR 177 (188)
T ss_pred EEccCCCcceEEcC-----------cEEECCCCCCEEee
Confidence 45999999998744 68999999986544
No 417
>PLN02827 Alcohol dehydrogenase-like
Probab=82.45 E-value=19 Score=34.34 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=57.3
Q ss_pred CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-----cCCC-C-CCC
Q 018003 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-----DISR-L-PFA 245 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-----d~~~-~-p~~ 245 (362)
...++.+||-.|+|. |.++..+++..-...++++|.+++..+.+++. ... .++.. +... + ...
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l--------Ga~-~~i~~~~~~~~~~~~v~~~~ 260 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF--------GVT-DFINPNDLSEPIQQVIKRMT 260 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc--------CCc-EEEcccccchHHHHHHHHHh
Confidence 445688999999875 66666666653223588999999888877652 111 11111 1000 0 011
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEE
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGT 284 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~ 284 (362)
.+.+|+|+-. ...+ ..+....++|++| |++++.
T Consensus 261 ~~g~d~vid~-----~G~~-~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 261 GGGADYSFEC-----VGDT-GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCCEEEEC-----CCCh-HHHHHHHHhhccCCCEEEEE
Confidence 2258888742 2233 3577788899998 999864
No 418
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=82.36 E-value=0.95 Score=26.82 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=16.3
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (362)
..|++||....... ..+.|+.||.
T Consensus 2 ~~C~~CGy~y~~~~-----------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE-----------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc-----------CCCcCcCCCC
Confidence 57999986543221 4678999985
No 419
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.28 E-value=0.97 Score=39.70 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=22.6
Q ss_pred CeeeCCCCCCCccccc----CCC------------CccccccCCceecCccCccccc
Q 018003 70 NVLACPICYKPLTWIG----DSS------------LSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~----~~~------------~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
....||+|+..+.... ... ...+...-....||+||..+..
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~ 60 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFE 60 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccc
Confidence 3478999999553321 000 0122222235689999976554
No 420
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=82.18 E-value=23 Score=33.56 Aligned_cols=101 Identities=15% Similarity=0.123 Sum_probs=60.3
Q ss_pred hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec----CCC-C-CC
Q 018003 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD----ISR-L-PF 244 (362)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d----~~~-~-p~ 244 (362)
.....++.+||=.|+|. |..+..+++..-..+|+++|.+++.++.+++. .....+...+ +.. + ..
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~--------Ga~~~i~~~~~~~~~~~~v~~~ 251 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL--------GATDCVNPNDYDKPIQEVIVEI 251 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--------CCCeEEcccccchhHHHHHHHH
Confidence 34456688999999875 66666666653223799999999988888653 1111111111 000 0 01
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~~ 286 (362)
..+.+|+|+- ....+ ..+.+..+.+++| |++++...
T Consensus 252 ~~~g~d~vid-----~~G~~-~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 252 TDGGVDYSFE-----CIGNV-NVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred hCCCCCEEEE-----CCCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence 1235788764 33333 3577788899886 99886643
No 421
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=82.10 E-value=0.82 Score=37.16 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=24.7
Q ss_pred eeCCCCCCCcccccCCCCc-cccccCCceecCccCccccc
Q 018003 72 LACPICYKPLTWIGDSSLS-IESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~-~~~~~~~~l~C~~C~~~~~~ 110 (362)
+.||.|+.+-....++... ++......-.|.+||.-|..
T Consensus 1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTT 40 (147)
T TIGR00244 1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTT 40 (147)
T ss_pred CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccce
Confidence 4799999965443333332 23333445679999988766
No 422
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=82.03 E-value=0.88 Score=29.40 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=17.6
Q ss_pred eCCCCCC-CcccccCCCCccccccCCceecCccCccc
Q 018003 73 ACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (362)
Q Consensus 73 ~CP~C~~-~l~~~~~~~~~~~~~~~~~l~C~~C~~~~ 108 (362)
.||.||. .+.... ...+.|..||...
T Consensus 21 ~CPrCG~gvfmA~H----------~dR~~CGkCgyTe 47 (51)
T COG1998 21 FCPRCGPGVFMADH----------KDRWACGKCGYTE 47 (51)
T ss_pred cCCCCCCcchhhhc----------CceeEeccccceE
Confidence 4999995 332222 1489999999754
No 423
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=81.98 E-value=4.2 Score=35.54 Aligned_cols=72 Identities=7% Similarity=0.150 Sum_probs=50.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL 242 (362)
Q Consensus 166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~ 242 (362)
.+.+.+..+.-...-|.+||.|.|..++.+...+. .+...+|.+...+.-.+...+.. ..+..++.+|+...
T Consensus 39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcC----CcceEEecccccee
Confidence 44555555555567899999999999999998864 47778888876655544433333 45788888887643
No 424
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=81.91 E-value=15 Score=30.71 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=61.4
Q ss_pred HHHHHHhhcCC--CCCCeEEEEcCccchHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003 165 EFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241 (362)
Q Consensus 165 ~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~ 241 (362)
..+.+.+.+.. ..+.+|+=|||=+-... +.+ ..+..+++..|++...... ..+ .++.-|...
T Consensus 11 T~~~l~~~l~~~~~~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF~~~------------~~~-~F~fyD~~~ 75 (162)
T PF10237_consen 11 TAEFLARELLDGALDDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRFEQF------------GGD-EFVFYDYNE 75 (162)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchHHhc------------CCc-ceEECCCCC
Confidence 33444444332 34679999999774443 333 3345589999999864332 123 455666644
Q ss_pred ---CC-CCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEE
Q 018003 242 ---LP-FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 242 ---~p-~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~ 286 (362)
+| .-.++||+|++---+ +... .+....+.-++|+++.+++.+.
T Consensus 76 p~~~~~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 76 PEELPEELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred hhhhhhhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 22 115789999974333 1111 1344556667788899988765
No 425
>PRK07806 short chain dehydrogenase; Provisional
Probab=81.90 E-value=27 Score=30.68 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=57.4
Q ss_pred CCeEEEEcCccc--h-HHHHHHHhCCCCEEEEEeCCH-HHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CC---
Q 018003 178 GGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSE-NMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--- 245 (362)
Q Consensus 178 ~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~--- 245 (362)
++++|-.|++.| . +...+.+.|. +|++++-+. ...+...+.++.. ..++.++.+|+.+.. +.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAA----GGRASAVGADLTDEESVAALMDTAR 79 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 568898887443 3 3344444555 888887653 2333333333332 346778889987632 00
Q ss_pred --CCcceEEEecccccCCC-------------CHHHHHHHHHhhccCCcEEEEEE
Q 018003 246 --SSSIDAVHAGAAIHCWS-------------SPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 246 --~~~fD~V~~~~vl~h~~-------------d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
-+..|+|+.+....... -+..+++.+.+.++.+|.+++..
T Consensus 80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 13588888665432110 13356777777777677766553
No 426
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=81.86 E-value=0.89 Score=31.94 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=21.9
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~ 109 (362)
..-.||.||...... .....+.|+.||....
T Consensus 27 TSq~C~~CG~~~~~~---------~~~r~~~C~~Cg~~~~ 57 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKR---------RSGRVFTCPNCGFEMD 57 (69)
T ss_pred CccCccCcccccccc---------cccceEEcCCCCCEEC
Confidence 446699999876541 2246899999997643
No 427
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=81.77 E-value=21 Score=33.47 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=57.9
Q ss_pred CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC---C--CCCCC
Q 018003 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---L--PFASS 247 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~--p~~~~ 247 (362)
...++.+||=.|+|. |..+..+++......+++++.+++..+.+++. .-..++..+-.. + .....
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL---------GAMQTFNSREMSAPQIQSVLREL 227 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc---------CCceEecCcccCHHHHHHHhcCC
Confidence 345688999999875 66666666653222478999999888877542 111111111100 0 01123
Q ss_pred cce-EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 248 SID-AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 248 ~fD-~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
.+| +|+ +.... ...+.+..+.|++||.+++.-.
T Consensus 228 ~~d~~v~-----d~~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 228 RFDQLIL-----ETAGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCeEEE-----ECCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 567 544 33333 2468888999999999987643
No 428
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=81.71 E-value=0.68 Score=34.73 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=25.2
Q ss_pred cCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
....+.||.|++.....-. ..-....+.+.|.+||..|..
T Consensus 19 L~k~FtCp~Cghe~vs~ct---vkk~~~~g~~~Cg~CGls~e~ 58 (104)
T COG4888 19 LPKTFTCPRCGHEKVSSCT---VKKTVNIGTAVCGNCGLSFEC 58 (104)
T ss_pred CCceEecCccCCeeeeEEE---EEecCceeEEEcccCcceEEE
Confidence 3467999999985433110 011123468899999987765
No 429
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=81.66 E-value=1.1 Score=29.72 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=20.2
Q ss_pred eeCCCCCCCcc-cccCCCCccccccCCceecCccCccccc
Q 018003 72 LACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 72 l~CP~C~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
..||.||+.-. +.. . ..+....+.+.|..|+...+.
T Consensus 2 kPCPfCGg~~~~~~~--~-~~~~~~~~~~~C~~Cga~~~~ 38 (53)
T TIGR03655 2 KPCPFCGGADVYLRR--G-FDPLDLSHYFECSTCGASGPV 38 (53)
T ss_pred CCCCCCCCcceeeEe--c-cCCCCCEEEEECCCCCCCccc
Confidence 56999998433 211 0 011112235589999987554
No 430
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=81.62 E-value=13 Score=34.47 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=50.4
Q ss_pred eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCcceEEEecc
Q 018003 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHAGA 256 (362)
Q Consensus 180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~fD~V~~~~ 256 (362)
+++|+=||.|.+...+.+.|. ..+.++|+++.+.+.-+.+. + ....+|+..+. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence 689999999999999999984 46889999999888877763 2 68889998764 343 599999763
Q ss_pred c
Q 018003 257 A 257 (362)
Q Consensus 257 v 257 (362)
-
T Consensus 70 P 70 (335)
T PF00145_consen 70 P 70 (335)
T ss_dssp -
T ss_pred C
Confidence 3
No 431
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=81.57 E-value=0.82 Score=43.81 Aligned_cols=34 Identities=18% Similarity=0.464 Sum_probs=25.3
Q ss_pred cCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003 68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
....-.||.||..+...+ .+.++|+.||..++..
T Consensus 347 ~~~~p~Cp~Cg~~m~S~G----------~~g~rC~kCg~~~~~~ 380 (421)
T COG1571 347 ERVNPVCPRCGGRMKSAG----------RNGFRCKKCGTRARET 380 (421)
T ss_pred EEcCCCCCccCCchhhcC----------CCCcccccccccCCcc
Confidence 334446999999876655 2389999999887763
No 432
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=81.56 E-value=2.5 Score=38.74 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=44.2
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK 325 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 325 (362)
.+.||+|+.....-|+-.|. +.++++|+|+|++.+.-. ...+-..-.+.+ .+.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf-----mvdLrKEq~~~F---------------~~kv~ 274 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF-----MVDLRKEQLQEF---------------VKKVK 274 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh-----heeCCHHHHHHH---------------HHHHH
Confidence 46799999988776665555 778999999999987521 011111111111 24688
Q ss_pred HHHHHCCCEEEE
Q 018003 326 RIFRQFQLVVNL 337 (362)
Q Consensus 326 ~ll~~~Gf~~v~ 337 (362)
++++++||+...
T Consensus 275 eLA~~aG~~p~~ 286 (289)
T PF14740_consen 275 ELAKAAGFKPVT 286 (289)
T ss_pred HHHHHCCCcccc
Confidence 999999998754
No 433
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=81.47 E-value=0.89 Score=39.08 Aligned_cols=45 Identities=24% Similarity=0.430 Sum_probs=23.3
Q ss_pred ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (362)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~ 109 (362)
..-..-.+.||.|+......+.............+.|++|+..+.
T Consensus 12 ~~c~~l~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~~~ 56 (188)
T PF08996_consen 12 KDCEPLKLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTPLS 56 (188)
T ss_dssp TT---EEEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B--
T ss_pred cCCCceEeECCCCCCCccccccccCCccccccCcCcCCCCCCcCC
Confidence 444455688999999877665444445556677899999998433
No 434
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=81.15 E-value=3.5 Score=35.10 Aligned_cols=95 Identities=12% Similarity=0.157 Sum_probs=52.4
Q ss_pred HHHHhhcCCCCCC-eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003 167 ELMKGYLKPVLGG-NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-- 243 (362)
Q Consensus 167 ~~l~~~l~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-- 243 (362)
+.+.+++...++. .|+.+|||--.....+....+...++-+|. +++++.-++.+.........+..++.+|+.+..
T Consensus 67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~ 145 (183)
T PF04072_consen 67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWI 145 (183)
T ss_dssp HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHH
T ss_pred HHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhH
Confidence 3445555333344 899999999888777777544457777776 445555555555430000123457889987521
Q ss_pred -------CCCCcceEEEecccccCCC
Q 018003 244 -------FASSSIDAVHAGAAIHCWS 262 (362)
Q Consensus 244 -------~~~~~fD~V~~~~vl~h~~ 262 (362)
+..+..-++++-.++.+++
T Consensus 146 ~~L~~~g~~~~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 146 DALPKAGFDPDRPTLFIAEGVLMYLS 171 (183)
T ss_dssp HHHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred HHHHHhCCCCCCCeEEEEcchhhcCC
Confidence 2234455777778888874
No 435
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=80.99 E-value=0.87 Score=33.79 Aligned_cols=32 Identities=22% Similarity=0.566 Sum_probs=22.4
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
....||.|+..-... ..-++|.|..|+..+..
T Consensus 34 a~y~CpfCgk~~vkR---------~a~GIW~C~~C~~~~AG 65 (91)
T TIGR00280 34 AKYVCPFCGKKTVKR---------GSTGIWTCRKCGAKFAG 65 (91)
T ss_pred cCccCCCCCCCceEE---------EeeEEEEcCCCCCEEeC
Confidence 457899998643211 12379999999987765
No 436
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=80.91 E-value=0.98 Score=33.49 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=22.3
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
..+.||.|+..-... ...++|.|..|+..+..
T Consensus 35 a~y~CpfCgk~~vkR---------~a~GIW~C~~C~~~~AG 66 (90)
T PTZ00255 35 AKYFCPFCGKHAVKR---------QAVGIWRCKGCKKTVAG 66 (90)
T ss_pred CCccCCCCCCCceee---------eeeEEEEcCCCCCEEeC
Confidence 457899998642211 12379999999987765
No 437
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=80.80 E-value=5.3 Score=38.09 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=71.1
Q ss_pred CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------------
Q 018003 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------------- 243 (362)
Q Consensus 178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-------------- 243 (362)
+.+.||.+|+.+.....+++.....+--|+++..+.+..+..+-... ........+..+|+...+
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~-~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNS-EHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCc-ccccccCceeccccccceeccccHHHHHhhcc
Confidence 56899999999999999888765556778999888887776543321 001223334444433211
Q ss_pred ---------------CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003 244 ---------------FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289 (362)
Q Consensus 244 ---------------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~ 289 (362)
++...+|. ..++-|+++-..+.......++|+|.+++......
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 12233444 45566666767778888899999999988776653
No 438
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=80.74 E-value=23 Score=32.67 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=59.2
Q ss_pred cCCCCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCCCcce
Q 018003 173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSID 250 (362)
Q Consensus 173 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD 250 (362)
....++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++. . .. .++...-.... -..+.+|
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g-------~~-~~~~~~~~~~~~~~~~~~d 227 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-G-------AD-EVVDSGAELDEQAAAGGAD 227 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-C-------Cc-EEeccCCcchHHhccCCCC
Confidence 445567889999987 566666666552 34899999999888777542 1 11 11111110000 0124588
Q ss_pred EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
+++.... . ...+.++.+.|+++|.++...
T Consensus 228 ~vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 228 VILVTVV-----S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEEECCC-----c-HHHHHHHHHhcccCCEEEEEC
Confidence 8875321 2 235788899999999998764
No 439
>PRK10458 DNA cytosine methylase; Provisional
Probab=80.57 E-value=31 Score=34.16 Aligned_cols=73 Identities=18% Similarity=0.157 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCCCC------CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe
Q 018003 164 KEFELMKGYLKPVL------GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237 (362)
Q Consensus 164 ~~~~~l~~~l~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 237 (362)
.....+...+...+ ..+++|+=||.|.+..-+...|. ..+.++|+++.+.+.-+.++.. .+....+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~ 141 (467)
T PRK10458 68 AEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNE 141 (467)
T ss_pred HHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceecc
Confidence 34455665554322 45899999999999999988875 3577999999887777665321 123344556
Q ss_pred cCCCC
Q 018003 238 DISRL 242 (362)
Q Consensus 238 d~~~~ 242 (362)
|+..+
T Consensus 142 DI~~i 146 (467)
T PRK10458 142 DIRDI 146 (467)
T ss_pred ChhhC
Confidence 66554
No 440
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=80.48 E-value=35 Score=28.94 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=58.4
Q ss_pred eEEEEcCcc-c-hHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-----CCC---------CCCEEEEEecCCCCC
Q 018003 180 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NFP---------KENFLLVRADISRLP 243 (362)
Q Consensus 180 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~---------~~~~~~~~~d~~~~p 243 (362)
+|.=||+|+ | .++..++..|. +|+.+|.+++.++.+++++.... .+. ..++. ...|+...-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~ 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh
Confidence 356688886 4 34555566665 99999999999998888765510 000 12333 334444321
Q ss_pred CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV 288 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~ 288 (362)
..|+|+=.- .|.++-...+++++.+.+.|+-.|.-.+...
T Consensus 78 ----~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 78 ----DADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp ----TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred ----hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 467766322 2333333588999999999998887665443
No 441
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=80.09 E-value=35 Score=31.56 Aligned_cols=98 Identities=10% Similarity=-0.030 Sum_probs=60.6
Q ss_pred hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCC-----
Q 018003 171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRL----- 242 (362)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~----- 242 (362)
+.....++.+||=.|. |.|..+..+++.. +.++++++.+++..+.+++. ... .++..+- ...
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~~~~ 201 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL--------GFD-VAFNYKTVKSLEETLK 201 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc--------CCC-EEEeccccccHHHHHH
Confidence 3344567889998884 3577777777663 34899999998888877652 111 1111111 011
Q ss_pred CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
....+.+|+|+- .... ..+....+.|+++|+++...
T Consensus 202 ~~~~~gvdvv~d-----~~G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 202 KASPDGYDCYFD-----NVGG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred HhCCCCeEEEEE-----CCCH--HHHHHHHHHhCcCcEEEEec
Confidence 011245888874 2222 34688899999999998653
No 442
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=79.98 E-value=31 Score=32.54 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=61.1
Q ss_pred hcCCCCCCeEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe----cCCC-C-C
Q 018003 172 YLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DISR-L-P 243 (362)
Q Consensus 172 ~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~~~-~-p 243 (362)
.....++.+||=.|+ | .|.++..+++.. +.++++++.+++..+.+++.+. .. .++.. +... + .
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lG-------a~-~vi~~~~~~~~~~~i~~ 223 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLG-------FD-EAFNYKEEPDLDAALKR 223 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcC-------CC-EEEECCCcccHHHHHHH
Confidence 344567889999998 3 577877777763 3589999999887777763221 11 11211 1110 0 0
Q ss_pred CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
...+.+|+|+-. ... ..+....+.|++||++++.-
T Consensus 224 ~~~~gvD~v~d~-----vG~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 224 YFPEGIDIYFDN-----VGG--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred HCCCCcEEEEEC-----CCH--HHHHHHHHHhccCCEEEEEC
Confidence 112358888743 222 46788899999999998653
No 443
>PRK07109 short chain dehydrogenase; Provisional
Probab=79.74 E-value=33 Score=32.12 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=50.8
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C----
Q 018003 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (362)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~---- 244 (362)
.+++||=.|++.|. +...+++.|. +|+.++.+++.++...+.+... ..++.++.+|+.+.. +
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~----g~~~~~v~~Dv~d~~~v~~~~~~~~ 80 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAA----GGEALAVVADVADAEAVQAAADRAE 80 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 35678888875543 2344556665 8999999888777666665544 357888899986632 0
Q ss_pred -CCCcceEEEecccc
Q 018003 245 -ASSSIDAVHAGAAI 258 (362)
Q Consensus 245 -~~~~fD~V~~~~vl 258 (362)
.-+.+|+++.+...
T Consensus 81 ~~~g~iD~lInnAg~ 95 (334)
T PRK07109 81 EELGPIDTWVNNAMV 95 (334)
T ss_pred HHCCCCCEEEECCCc
Confidence 12468999877654
No 444
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=79.66 E-value=22 Score=33.14 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=57.5
Q ss_pred CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC------CCCC
Q 018003 174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFAS 246 (362)
Q Consensus 174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------p~~~ 246 (362)
...++.+||..|+|. |..+..+++......+++++.++...+.+++. ....++...-..+ -...
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~---------g~~~vi~~~~~~~~~~i~~~~~~ 234 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA---------GATDIINPKNGDIVEQILELTGG 234 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh---------CCcEEEcCCcchHHHHHHHHcCC
Confidence 344678888877753 66666666653213788888888777666642 1111221111111 0123
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
+.+|+|+.... ....+.+..+.|+++|+++...
T Consensus 235 ~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 235 RGVDCVIEAVG------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCCcEEEEccC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 56898885322 1246888899999999988653
No 445
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.62 E-value=28 Score=32.61 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=59.7
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----C-CC
Q 018003 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FA 245 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p-~~ 245 (362)
....++.+||-.|+|. |..+..+++......++++|.+++..+.+++. .-..++..+-..+ . ..
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~---------g~~~~v~~~~~~~~~~i~~~~~ 232 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY---------GATDIVDYKNGDVVEQILKLTG 232 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc---------CCceEecCCCCCHHHHHHHHhC
Confidence 3455688999888764 66666666653223699999998887777652 1111221111111 1 12
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
...+|+|+... .. ...+.++.+.|+++|+++...
T Consensus 233 ~~~~d~vld~~-----g~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 233 GKGVDAVIIAG-----GG-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCCcEEEECC-----CC-HHHHHHHHHHhhcCCEEEEec
Confidence 24589887432 22 246889999999999988654
No 446
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=79.58 E-value=3.7 Score=37.11 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 018003 191 FSRIFAKSGLFSLVVALDYSENMLKQCYE 219 (362)
Q Consensus 191 ~~~~l~~~~~~~~v~gvD~s~~~~~~a~~ 219 (362)
++..|.+.++..+|+|+|.++..++.|.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH
Confidence 45678888878899999999999988876
No 447
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.50 E-value=4 Score=33.46 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=25.2
Q ss_pred EEcCccc--hHHHHHH--HhCCCCEEEEEeCCHHHHHHHHHH
Q 018003 183 DASCGSG--LFSRIFA--KSGLFSLVVALDYSENMLKQCYEF 220 (362)
Q Consensus 183 DiGcG~G--~~~~~l~--~~~~~~~v~gvD~s~~~~~~a~~~ 220 (362)
|||++.| .....+. ..++...++++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5554443 456677999999999999988887
No 448
>PRK08324 short chain dehydrogenase; Validated
Probab=79.45 E-value=23 Score=36.97 Aligned_cols=103 Identities=21% Similarity=0.222 Sum_probs=64.3
Q ss_pred CCCeEEEEcCccc--h-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C----
Q 018003 177 LGGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (362)
Q Consensus 177 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~---- 244 (362)
+++++|-.|++.| . +...+.+.|. +|+.+|.++..++.+.+.+... .++.++.+|+.+.. +
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~-----~~v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP-----DRALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc-----CcEEEEEecCCCHHHHHHHHHHHH
Confidence 4678998886443 3 3444555565 8999999987776665543321 36788888986532 1
Q ss_pred -CCCcceEEEecccccCCCC-------------------HHHHHHHHHhhccC---CcEEEEEEE
Q 018003 245 -ASSSIDAVHAGAAIHCWSS-------------------PSTGVAEISRVLRP---GGVFVGTTY 286 (362)
Q Consensus 245 -~~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~r~Lkp---gG~li~~~~ 286 (362)
..+.+|+|+.+...-.... +..+++.+.+.+++ ||.+++...
T Consensus 494 ~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS 558 (681)
T PRK08324 494 LAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS 558 (681)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 1246899988765432111 23456667777776 677776543
No 449
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.44 E-value=18 Score=31.81 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=47.1
Q ss_pred CCeEEEEcCccc--h-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CC----
Q 018003 178 GGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---- 245 (362)
Q Consensus 178 ~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~---- 245 (362)
++++|=.|++.| . ++..+.+.|. ++++++.+++.++...+.++.. ..++.++.+|+.+.. +.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAA----GGRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 568887776432 2 2333444565 8999998887666655555433 357888999987532 10
Q ss_pred -CCcceEEEecccc
Q 018003 246 -SSSIDAVHAGAAI 258 (362)
Q Consensus 246 -~~~fD~V~~~~vl 258 (362)
-+..|+|+.+...
T Consensus 81 ~~~~id~vi~~ag~ 94 (250)
T PRK12939 81 ALGGLDGLVNNAGI 94 (250)
T ss_pred HcCCCCEEEECCCC
Confidence 1468998876543
No 450
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=79.29 E-value=2 Score=26.23 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=18.4
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (362)
..||.|++.-...- .+....+.+.|..|+.
T Consensus 4 ~pCP~CGG~DrFr~-----~d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 4 GPCPNCGGSDRFRF-----DDKDGRGTWFCSVCGA 33 (37)
T ss_pred cCCCCCCCcccccc-----ccCCCCcCEEeCCCCC
Confidence 46999998432211 1112347899999974
No 451
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=79.06 E-value=0.84 Score=33.36 Aligned_cols=44 Identities=16% Similarity=0.397 Sum_probs=18.0
Q ss_pred ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
.......+.||.|+..-...-. + +.....+.+.|..||..|...
T Consensus 16 ~~~l~~~F~CPfC~~~~sV~v~--i-dkk~~~~~~~C~~Cg~~~~~~ 59 (81)
T PF05129_consen 16 KPKLPKVFDCPFCNHEKSVSVK--I-DKKEGIGILSCRVCGESFQTK 59 (81)
T ss_dssp ----SS----TTT--SS-EEEE--E-ETTTTEEEEEESSS--EEEEE
T ss_pred CCCCCceEcCCcCCCCCeEEEE--E-EccCCEEEEEecCCCCeEEEc
Confidence 3445577999999964322210 0 111233689999999888763
No 452
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=79.04 E-value=1.3 Score=29.93 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=22.0
Q ss_pred ccccCCeeeCCCCCCCcc-cccCCCCccccccCCceecCccCcc
Q 018003 65 ASTSKNVLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKT 107 (362)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (362)
.....-.+.||.||.... .... -......++|++||..
T Consensus 21 p~e~~v~F~CPnCGe~~I~Rc~~-----CRk~g~~Y~Cp~CGF~ 59 (61)
T COG2888 21 PGETAVKFPCPNCGEVEIYRCAK-----CRKLGNPYRCPKCGFE 59 (61)
T ss_pred cCCceeEeeCCCCCceeeehhhh-----HHHcCCceECCCcCcc
Confidence 445566788999995332 1110 0112357889999854
No 453
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=79.04 E-value=35 Score=32.32 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=59.5
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cCC-CC-----CC
Q 018003 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DIS-RL-----PF 244 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~-~~-----p~ 244 (362)
....++.+||=.|+|. |..+..+++......++++|.+++.++.+++. ... .++.. +.. .+ ..
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l--------Ga~-~~i~~~~~~~~~~~~v~~~ 252 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF--------GAT-DCVNPKDHDKPIQQVLVEM 252 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc--------CCC-EEEcccccchHHHHHHHHH
Confidence 3455688999998764 66666666653222699999999988887652 111 11211 100 00 01
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~~ 286 (362)
..+.+|+|+-. ...+ ..+.+..+.|+++ |+++....
T Consensus 253 ~~~g~d~vid~-----~g~~-~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 253 TDGGVDYTFEC-----IGNV-KVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred hCCCCcEEEEC-----CCCh-HHHHHHHHhhccCCCeEEEEcc
Confidence 12358888742 2222 4678888999997 98887643
No 454
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=78.87 E-value=39 Score=31.08 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=61.0
Q ss_pred hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----C
Q 018003 171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P 243 (362)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p 243 (362)
+.....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++. .. -.++...-..+ .
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~--------Ga-~~vi~~~~~~~~~~v~~ 206 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKEL--------GF-DAVFNYKTVSLEEALKE 206 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc--------CC-CEEEeCCCccHHHHHHH
Confidence 3444567889988884 4577777777763 35899999998888877662 11 11221111111 0
Q ss_pred CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
...+.+|+|+-.- .. ..+.+..+.|+++|+++...
T Consensus 207 ~~~~gvd~vld~~-----g~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 207 AAPDGIDCYFDNV-----GG--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred HCCCCcEEEEECC-----CH--HHHHHHHHhhccCCEEEEEc
Confidence 1124588887432 22 45788999999999998653
No 455
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=78.85 E-value=44 Score=29.24 Aligned_cols=102 Identities=16% Similarity=0.057 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCccch----HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCCCCCCCcce
Q 018003 176 VLGGNIIDASCGSGL----FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSID 250 (362)
Q Consensus 176 ~~~~~vLDiGcG~G~----~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~p~~~~~fD 250 (362)
.+.+.|+++.|+.|. ++...+.+.-++++++|-++++.+...++.+... +....++|+.++. +.+-..-...|
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~--~~~~~vEfvvg~~~e~~~~~~~~iD 117 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEA--GLSDVVEFVVGEAPEEVMPGLKGID 117 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhc--cccccceEEecCCHHHHHhhccCCC
Confidence 345689999766432 3333333434569999999998888888877654 1234568888875 32221224578
Q ss_pred EEEecccccCCCCHHHHHHHHHhhcc--CCcEEEEEE
Q 018003 251 AVHAGAAIHCWSSPSTGVAEISRVLR--PGGVFVGTT 285 (362)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~r~Lk--pgG~li~~~ 285 (362)
+++..-= .....+++.++++ |.|-+++..
T Consensus 118 F~vVDc~------~~d~~~~vl~~~~~~~~GaVVV~~ 148 (218)
T PF07279_consen 118 FVVVDCK------REDFAARVLRAAKLSPRGAVVVCY 148 (218)
T ss_pred EEEEeCC------chhHHHHHHHHhccCCCceEEEEe
Confidence 7775332 2333334444443 457655543
No 456
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=78.82 E-value=22 Score=33.37 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=78.3
Q ss_pred CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC---CCcceEEEec
Q 018003 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAVHAG 255 (362)
Q Consensus 179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~---~~~fD~V~~~ 255 (362)
.+++|+=||.|.+..-+...|. .-+.++|+++.+++.-+.+. +...++..|+...... ...+|+++..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf-~~~~a~Eid~~a~~ty~~n~--------~~~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGF-EIVFANEIDPPAVATYKANF--------PHGDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCC-eEEEEEecCHHHHHHHHHhC--------CCCceeechHhhcChhhccccCCCEEEeC
Confidence 5899999999999999999884 46789999999888877753 3245666777654321 1168999976
Q ss_pred ccccCC---------CCHH----HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHH
Q 018003 256 AAIHCW---------SSPS----TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFD 322 (362)
Q Consensus 256 ~vl~h~---------~d~~----~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 322 (362)
.-.+.+ .|+. --+.++...++| .+++.+-+.. ++. + ..-..+
T Consensus 75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g-------l~~---------------~-~~~~~~ 129 (328)
T COG0270 75 PPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG-------LLS---------------S-KGQTFD 129 (328)
T ss_pred CCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch-------HHh---------------c-CchHHH
Confidence 544333 3443 235556667778 3443332211 110 1 223456
Q ss_pred HHHHHHHHCCCE
Q 018003 323 DLKRIFRQFQLV 334 (362)
Q Consensus 323 ~l~~ll~~~Gf~ 334 (362)
.+.+.|++.||.
T Consensus 130 ~i~~~L~~~GY~ 141 (328)
T COG0270 130 EIKKELEELGYG 141 (328)
T ss_pred HHHHHHHHcCCc
Confidence 788888888884
No 457
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=78.80 E-value=1.1 Score=33.19 Aligned_cols=32 Identities=22% Similarity=0.647 Sum_probs=22.1
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
....||.|+..-... ..-+++.|..|+..+..
T Consensus 35 a~y~CpfCgk~~vkR---------~a~GIW~C~~C~~~~AG 66 (90)
T PRK03976 35 AKHVCPVCGRPKVKR---------VGTGIWECRKCGAKFAG 66 (90)
T ss_pred cCccCCCCCCCceEE---------EEEEEEEcCCCCCEEeC
Confidence 457899997643211 12379999999987665
No 458
>PRK06701 short chain dehydrogenase; Provisional
Probab=78.46 E-value=25 Score=32.16 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=60.4
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHH-HHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CC--
Q 018003 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSEN-MLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA-- 245 (362)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~-- 245 (362)
+++++|-.|++.|. ++..+++.|. +|+.++.++. ..+...+.++.. ..++.++.+|+.+.. +.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE----GVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc----CCeEEEEEccCCCHHHHHHHHHHH
Confidence 35689999876543 3445555665 8888877642 233333333332 346788899986532 11
Q ss_pred ---CCcceEEEecccccCC----CC----------------HHHHHHHHHhhccCCcEEEEEEE
Q 018003 246 ---SSSIDAVHAGAAIHCW----SS----------------PSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 246 ---~~~fD~V~~~~vl~h~----~d----------------~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
-+.+|+|+.+....+. .+ +..+++.+.+.++++|.++....
T Consensus 119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 1468988876543221 11 12446666677778887776543
No 459
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.45 E-value=5.6 Score=36.57 Aligned_cols=100 Identities=13% Similarity=0.190 Sum_probs=58.6
Q ss_pred CeEEEEcCcc--chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC------CCC--------CCCEEEEEecCCCC
Q 018003 179 GNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFP--------KENFLLVRADISRL 242 (362)
Q Consensus 179 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~--------~~~~~~~~~d~~~~ 242 (362)
.+|-=||+|+ +..+..++..|. +|+.+|.+++.++.+++++.+.. +.. ..++. ...|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh
Confidence 3788899995 345666677776 99999999999988776644320 000 01111 12233211
Q ss_pred CCCCCcceEEEecccccCCCCHHHHHHHHHhhc-cCCcEEEEEEE
Q 018003 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTY 286 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpgG~li~~~~ 286 (362)
...|+|+-. +.|...-...++.++.+.+ +|+.++.-.+.
T Consensus 83 ----~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snTS 122 (286)
T PRK07819 83 ----ADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNTS 122 (286)
T ss_pred ----CCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECCC
Confidence 345777633 2232222347788888888 77776665443
No 460
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.43 E-value=27 Score=32.31 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=60.3
Q ss_pred hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC----CCC
Q 018003 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFA 245 (362)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----p~~ 245 (362)
.....++.+||-+|+|. |..+..+++.. +.+ ++.++.+++..+.+++. ... .++..+-... ...
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~--------g~~-~~~~~~~~~~~~~~~~~ 223 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL--------GAT-ETVDPSREDPEAQKEDN 223 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh--------CCe-EEecCCCCCHHHHHHhc
Confidence 34455688999998753 55655555553 235 88999998887777542 111 2222211111 112
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~ 286 (362)
...+|+|+..-. ....+.++.+.|+++|.++....
T Consensus 224 ~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 224 PYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 356899985321 13568888999999999986543
No 461
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=78.05 E-value=9.3 Score=35.03 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=55.7
Q ss_pred CeEEEEcCcc--chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-ecCCCCCCCCCcceEEEec
Q 018003 179 GNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVHAG 255 (362)
Q Consensus 179 ~~vLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~p~~~~~fD~V~~~ 255 (362)
.+|+=+|.|- |.+.+.+.+.|+...++|.|.+...++.+.+. ++.... .+... ......|+|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----------gv~d~~~~~~~~--~~~~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----------GVIDELTVAGLA--EAAAEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----------Ccccccccchhh--hhcccCCEEEEe
Confidence 4788888885 77888888889877889999999888777752 121111 11101 123457888864
Q ss_pred ccccCCCCHHHHHHHHHhhccCCcEEE
Q 018003 256 AAIHCWSSPSTGVAEISRVLRPGGVFV 282 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~LkpgG~li 282 (362)
--+. .-..+++++...|++|..+.
T Consensus 72 vPi~---~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 72 VPIE---ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ccHH---HHHHHHHHhcccCCCCCEEE
Confidence 3222 22456777777777765544
No 462
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.02 E-value=1.2 Score=34.87 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=27.1
Q ss_pred ccccCCeeeCCCCCCCcccccC--CCCccccccCCceecCccCcccccC
Q 018003 65 ASTSKNVLACPICYKPLTWIGD--SSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~--~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
.-...-+++||+|..++.-+.. +-...+..-+..-.|.+||.-||..
T Consensus 33 kcgeati~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwt 81 (160)
T COG4306 33 KCGEATITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWT 81 (160)
T ss_pred hhchHHHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcH
Confidence 3445678899999886542210 0011111112234799999999884
No 463
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=77.83 E-value=1.4 Score=29.82 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=19.5
Q ss_pred cCCeeeCCCCCCC-cccccCCCCccccccCCceecCccCcc
Q 018003 68 SKNVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKT 107 (362)
Q Consensus 68 ~~~~l~CP~C~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (362)
....+.||.||.. +..-.. -......++|++||..
T Consensus 22 ~~~~F~CPnCG~~~I~RC~~-----CRk~~~~Y~CP~CGF~ 57 (59)
T PRK14890 22 KAVKFLCPNCGEVIIYRCEK-----CRKQSNPYTCPKCGFE 57 (59)
T ss_pred ccCEeeCCCCCCeeEeechh-----HHhcCCceECCCCCCc
Confidence 3567889999875 222110 0112246778888753
No 464
>PRK07576 short chain dehydrogenase; Provisional
Probab=77.72 E-value=28 Score=31.20 Aligned_cols=75 Identities=29% Similarity=0.373 Sum_probs=46.7
Q ss_pred CCCeEEEEcCccc--h-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C----
Q 018003 177 LGGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---- 244 (362)
Q Consensus 177 ~~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~---- 244 (362)
+++++|-.|.+.| . +...++..|. +|++++.+++.++...+.+... ..++.++..|+.+.. +
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQA----GPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh----CCceEEEECCCCCHHHHHHHHHHHH
Confidence 3668888886433 2 3344555554 8999999887666555444433 345678888886532 0
Q ss_pred -CCCcceEEEeccc
Q 018003 245 -ASSSIDAVHAGAA 257 (362)
Q Consensus 245 -~~~~fD~V~~~~v 257 (362)
..+.+|+++.+..
T Consensus 82 ~~~~~iD~vi~~ag 95 (264)
T PRK07576 82 DEFGPIDVLVSGAA 95 (264)
T ss_pred HHcCCCCEEEECCC
Confidence 1245899987653
No 465
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=77.70 E-value=1.7 Score=27.90 Aligned_cols=27 Identities=22% Similarity=0.658 Sum_probs=18.0
Q ss_pred eeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003 72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (362)
Q Consensus 72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (362)
+.||.|++.-.... . ....++|..|++
T Consensus 19 ~~CP~Cg~~~~~~~-~-------~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRL-K-------TRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEe-C-------CCCeEECCCCCC
Confidence 77999998521111 0 136899999985
No 466
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=77.70 E-value=1.5 Score=28.60 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=22.9
Q ss_pred CCeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 69 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
...+.|-.|+..+.... .....+|+.||+-...
T Consensus 4 ~~~Y~C~~Cg~~~~~~~---------~~~~irCp~Cg~rIl~ 36 (49)
T COG1996 4 MMEYKCARCGREVELDQ---------ETRGIRCPYCGSRILV 36 (49)
T ss_pred eEEEEhhhcCCeeehhh---------ccCceeCCCCCcEEEE
Confidence 35688999999874322 2357899999975433
No 467
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=77.69 E-value=1.6 Score=36.53 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=19.3
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT 107 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~ 107 (362)
..+||+||....- . ..-+||.||..
T Consensus 134 ~~vC~vCGy~~~g-e-----------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG-E-----------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC-C-----------CCCcCCCCCCh
Confidence 7899999976543 2 46799999963
No 468
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=77.62 E-value=1.7 Score=29.65 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=18.5
Q ss_pred CeeeCCCCCCCcccccCCCC-ccccccCCceecCccCc
Q 018003 70 NVLACPICYKPLTWIGDSSL-SIESAAGSSLQCNTCKK 106 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~-~~~~~~~~~l~C~~C~~ 106 (362)
.+..||.||++-........ ..+.. -.+.|.+||.
T Consensus 2 ~LkPCPFCG~~~~~~~~~~~~~~~~~--~~V~C~~Cga 37 (61)
T PF14354_consen 2 ELKPCPFCGSADVLIRQDEGFDYGMY--YYVECTDCGA 37 (61)
T ss_pred CCcCCCCCCCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence 35679999875332221100 00000 3577999997
No 469
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=77.59 E-value=27 Score=27.75 Aligned_cols=72 Identities=14% Similarity=-0.007 Sum_probs=56.0
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK 325 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 325 (362)
+.-.|+|+.++--+- .|....|-.+.+.|..+|.+.+.+|-.. ...+.++.++.
T Consensus 43 ddvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~g-------------------------r~g~V~~~~I~ 96 (127)
T PF11253_consen 43 DDVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAG-------------------------RPGHVEPSDIR 96 (127)
T ss_pred cccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCC-------------------------CCCCCCHHHHH
Confidence 345899998776433 3667788889999999999999998642 33567888999
Q ss_pred HHHHHCCCEEEEEEEece
Q 018003 326 RIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 326 ~ll~~~Gf~~v~~~~~g~ 343 (362)
+...-+|+...+....+.
T Consensus 97 eaA~taGL~~t~~~~v~~ 114 (127)
T PF11253_consen 97 EAAPTAGLVQTKSCAVGD 114 (127)
T ss_pred HHHhhcCCeeeeeeccCC
Confidence 999999998877766544
No 470
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.56 E-value=42 Score=31.30 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=60.2
Q ss_pred hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-------
Q 018003 171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR------- 241 (362)
Q Consensus 171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~------- 241 (362)
......++.+||-.|+|. |..+..+++.. +.+ ++.++.+++..+.+++. .. . .++..+-..
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~-G~~~v~~~~~~~~~~~~~~~~-g~------~--~vi~~~~~~~~~~~~~ 225 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAF-GATKVVVTDIDPSRLEFAKEL-GA------T--HTVNVRTEDTPESAEK 225 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHc-CC------c--EEeccccccchhHHHH
Confidence 344556688888888765 66666666653 235 88998888877777552 10 1 111111111
Q ss_pred C--CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 242 L--PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 242 ~--p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
+ ......+|+|+.... . ...+.+..+.|+++|+++...
T Consensus 226 ~~~~~~~~~~d~vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 226 IAELLGGKGPDVVIECTG-----A-ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred HHHHhCCCCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEEc
Confidence 0 122345899985432 1 236788899999999988654
No 471
>PRK08339 short chain dehydrogenase; Provisional
Probab=77.48 E-value=51 Score=29.46 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=50.7
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C----C
Q 018003 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----A 245 (362)
Q Consensus 178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~----~ 245 (362)
++++|-.|++.|. +...+++.|. +|+.++.+++.++...+.+... ...++.++.+|+.+.. + .
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSE---SNVDVSYIVADLTKREDLERTVKELKN 82 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhh---cCCceEEEEecCCCHHHHHHHHHHHHh
Confidence 5688888887653 4555666665 8999999987776666555432 1246788899987642 1 1
Q ss_pred CCcceEEEecccc
Q 018003 246 SSSIDAVHAGAAI 258 (362)
Q Consensus 246 ~~~fD~V~~~~vl 258 (362)
-+..|+++.+...
T Consensus 83 ~g~iD~lv~nag~ 95 (263)
T PRK08339 83 IGEPDIFFFSTGG 95 (263)
T ss_pred hCCCcEEEECCCC
Confidence 2468988877654
No 472
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=77.31 E-value=1.6 Score=34.15 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=24.1
Q ss_pred ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (362)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~ 108 (362)
.........|+.|+..+.... ..+.||.||...
T Consensus 64 I~~vp~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~~ 96 (113)
T PRK12380 64 IVYKPAQAWCWDCSQVVEIHQ-----------HDAQCPHCHGER 96 (113)
T ss_pred EEeeCcEEEcccCCCEEecCC-----------cCccCcCCCCCC
Confidence 556667789999997665533 456799999653
No 473
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=77.04 E-value=35 Score=32.28 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=58.6
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC--C---C-C-CC
Q 018003 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--S---R-L-PF 244 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~---~-~-p~ 244 (362)
....++.+||=+|+|. |..+..+++.....+|+++|.++...+.+++. . .. .++...- . . + ..
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-g------a~--~~i~~~~~~~~~~~~~~~~ 250 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-G------AT--DFINPKDSDKPVSEVIREM 250 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-C------CC--cEeccccccchHHHHHHHH
Confidence 3455688999888864 55666666653223799999999888888652 1 11 1111100 0 0 0 01
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~~ 286 (362)
..+.+|+|+-. ... ...+.+..+.|+++ |.++....
T Consensus 251 ~~~g~d~vid~-----~g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 251 TGGGVDYSFEC-----TGN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred hCCCCCEEEEC-----CCC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 12458888742 222 24578888899886 99887643
No 474
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=76.86 E-value=1.6 Score=40.73 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=21.7
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS 109 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~ 109 (362)
....||.|+++-...+ ...+.+.|.+||.+..
T Consensus 10 ~~~~Cp~Cg~~~iv~d--------~~~Ge~vC~~CG~Vl~ 41 (310)
T PRK00423 10 EKLVCPECGSDKLIYD--------YERGEIVCADCGLVIE 41 (310)
T ss_pred cCCcCcCCCCCCeeEE--------CCCCeEeecccCCccc
Confidence 3467999997422111 2468999999998653
No 475
>PRK08265 short chain dehydrogenase; Provisional
Probab=76.79 E-value=30 Score=30.85 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=45.7
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C-----
Q 018003 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----- 244 (362)
Q Consensus 178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~----- 244 (362)
++++|-.|++.|. +...+++.|. +|+.++.+++.++...+.+ ..++.++.+|+.+.. +
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 5688888875542 3445555665 8999998876554443322 246788889987642 0
Q ss_pred CCCcceEEEecccc
Q 018003 245 ASSSIDAVHAGAAI 258 (362)
Q Consensus 245 ~~~~fD~V~~~~vl 258 (362)
.-+..|+++.+...
T Consensus 77 ~~g~id~lv~~ag~ 90 (261)
T PRK08265 77 RFGRVDILVNLACT 90 (261)
T ss_pred HhCCCCEEEECCCC
Confidence 12468998877553
No 476
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.64 E-value=50 Score=30.66 Aligned_cols=159 Identities=10% Similarity=0.065 Sum_probs=82.0
Q ss_pred CCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHhhcC-------------------CCCCCCEEEE
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES-------------------NFPKENFLLV 235 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-------------------~~~~~~~~~~ 235 (362)
....|+.+|||.-.+...+...+ ....++=+|.++........ ..... ....++..++
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~i-k~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISI-KRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhh-cccCchhhhhhccccccccccCcceeccCceeee
Confidence 34689999999998888888776 44567777777655444411 11100 0011233334
Q ss_pred EecCCCCC----------CCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhH-HHH
Q 018003 236 RADISRLP----------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR-LLR 302 (362)
Q Consensus 236 ~~d~~~~p----------~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~-~~~ 302 (362)
-+|+.++. ...+-.-++++--+|-+++.- ..+++.+......++ ++..++..... ++...+. .++
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~-fv~YEQi~~~D-~Fg~vM~~nlk 243 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAH-FVNYEQINPND-RFGKVMLANLK 243 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCccc-EEEEeccCCCC-hHHHHHHHHHH
Confidence 44443221 001111233333344444221 245666666555444 44444443111 2222222 222
Q ss_pred HhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003 303 QVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG 342 (362)
Q Consensus 303 ~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g 342 (362)
.+.. ..++ -..+-|.+..+.-+.++||+.+....+.
T Consensus 244 ~r~~---~L~g-le~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ 279 (335)
T KOG2918|consen 244 RRGC---PLHG-LETYNSIESQRSRFLKAGWEYVIAVDMN 279 (335)
T ss_pred hcCC---CCch-hhhcccHHHHHHHHHhcCCceeehhhHH
Confidence 2211 3333 5677899999999999999887765443
No 477
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=76.29 E-value=1.2 Score=37.92 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=27.0
Q ss_pred cccCCeeeCCCCCCCccccc--CCCCccccccCCceecCccCccccc
Q 018003 66 STSKNVLACPICYKPLTWIG--DSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 66 ~~~~~~l~CP~C~~~l~~~~--~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
......+.||+|++.+.... ..-.--+.+......|.+||.-+..
T Consensus 9 ~~~~~~~~CPvCg~~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~~D 55 (201)
T COG1779 9 EEFETRIDCPVCGGTLKAHMYLYDIPYFGEVLISTGVCERCGYRSTD 55 (201)
T ss_pred eeeeeeecCCcccceeeEEEeeecCCccceEEEEEEEccccCCcccc
Confidence 34456688999999653321 1112233344567899999965444
No 478
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=76.23 E-value=56 Score=30.68 Aligned_cols=94 Identities=23% Similarity=0.273 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCcc-chHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--------C-C
Q 018003 176 VLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--------P-F 244 (362)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--------p-~ 244 (362)
.++.+||=.|+|. |..+..+++.. +. ++++++.+++..+.+++. . .. .++..+-... . .
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~~-g------~~--~vi~~~~~~~~~~~~~i~~~~ 245 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELAREF-G------AD--ATIDIDELPDPQRRAIVRDIT 245 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHc-C------CC--eEEcCcccccHHHHHHHHHHh
Confidence 3677888888764 55555666654 34 899999888877766542 1 11 1111111000 0 1
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
....+|+|+-... . ...+.+..+.|+++|+++...
T Consensus 246 ~~~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 246 GGRGADVVIEASG-----H-PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCCcEEEECCC-----C-hHHHHHHHHHhccCCEEEEEc
Confidence 1245898884321 1 235778889999999998654
No 479
>PRK05854 short chain dehydrogenase; Provisional
Probab=76.05 E-value=56 Score=30.19 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=51.2
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------- 243 (362)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---------- 243 (362)
.++++|=.|++.|. .+..|++.|. +|+.+.-+++..+.+.+.+... ....++.++.+|+.+..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~--~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTA--VPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 36688888877653 3445555665 8999998887766666655433 11246888999987642
Q ss_pred CCCCcceEEEecccc
Q 018003 244 FASSSIDAVHAGAAI 258 (362)
Q Consensus 244 ~~~~~fD~V~~~~vl 258 (362)
-..+..|+++.+..+
T Consensus 89 ~~~~~iD~li~nAG~ 103 (313)
T PRK05854 89 AEGRPIHLLINNAGV 103 (313)
T ss_pred HhCCCccEEEECCcc
Confidence 112468999987654
No 480
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=76.01 E-value=31 Score=32.61 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254 (362)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~ 254 (362)
.++.++|-.|+|. |..+..+++.. +..+++++.+++....+.+.+. ....+...+...+.-....+|+|+-
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~~~~~~~~~~~~~~G-------a~~~i~~~~~~~~~~~~~~~D~vid 250 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSDKKREEALEHLG-------ADDYLVSSDAAEMQEAADSLDYIID 250 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhcC-------CcEEecCCChHHHHHhcCCCcEEEE
Confidence 4678888888764 66666666653 3478888888766555544321 1111111111111001124787763
Q ss_pred cccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 255 ~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
....+ ..+..+.+.|++||+++...
T Consensus 251 -----~~g~~-~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 251 -----TVPVF-HPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred -----CCCch-HHHHHHHHHhccCCEEEEEC
Confidence 22222 46778889999999988754
No 481
>PRK09072 short chain dehydrogenase; Provisional
Probab=75.82 E-value=41 Score=29.89 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=50.7
Q ss_pred CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC---------C
Q 018003 178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---------A 245 (362)
Q Consensus 178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~---------~ 245 (362)
+.++|=.|++.|. ++..++++|. +|++++.+++.++...+.+ .. ..++.++.+|+.+..- .
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-~~----~~~~~~~~~D~~d~~~~~~~~~~~~~ 77 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARL-PY----PGRHRWVVADLTSEAGREAVLARARE 77 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHH-hc----CCceEEEEccCCCHHHHHHHHHHHHh
Confidence 5678888876543 4555666675 8999999987776665544 22 3578888899876420 0
Q ss_pred CCcceEEEecccccC
Q 018003 246 SSSIDAVHAGAAIHC 260 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h 260 (362)
.+..|+|+.+....+
T Consensus 78 ~~~id~lv~~ag~~~ 92 (263)
T PRK09072 78 MGGINVLINNAGVNH 92 (263)
T ss_pred cCCCCEEEECCCCCC
Confidence 246899998766543
No 482
>PRK07814 short chain dehydrogenase; Provisional
Probab=75.69 E-value=48 Score=29.51 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=48.6
Q ss_pred CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-----C---
Q 018003 177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-----A--- 245 (362)
Q Consensus 177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-----~--- 245 (362)
+++++|=.|++.|. ++..++++|. +|++++.+++.++...+.+... ..++.++.+|+.+... .
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAA----GRRAHVVAADLAHPEATAGLAGQAV 82 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 36788888865432 3444555565 9999999887766655555433 3567888899876421 0
Q ss_pred --CCcceEEEeccc
Q 018003 246 --SSSIDAVHAGAA 257 (362)
Q Consensus 246 --~~~fD~V~~~~v 257 (362)
-+.+|+|+.+..
T Consensus 83 ~~~~~id~vi~~Ag 96 (263)
T PRK07814 83 EAFGRLDIVVNNVG 96 (263)
T ss_pred HHcCCCCEEEECCC
Confidence 146899987654
No 483
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=75.61 E-value=15 Score=34.08 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=52.5
Q ss_pred CeEEEEcCcc-c-hHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003 179 GNIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA 256 (362)
Q Consensus 179 ~~vLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~ 256 (362)
.+|.=||+|. | .++..+.+.+...+|+++|.+++.++.+++. .... ....+.... -...|+|+..-
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~--------g~~~-~~~~~~~~~---~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL--------GLGD-RVTTSAAEA---VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC--------CCCc-eecCCHHHH---hcCCCEEEECC
Confidence 5788899986 3 4555666666434899999999877766542 1111 111122111 13478887654
Q ss_pred cccCCCCHHHHHHHHHhhccCCcEEEE
Q 018003 257 AIHCWSSPSTGVAEISRVLRPGGVFVG 283 (362)
Q Consensus 257 vl~h~~d~~~~l~~i~r~LkpgG~li~ 283 (362)
-... ...+++++...+++|..++.
T Consensus 75 p~~~---~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PVGA---SGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CHHH---HHHHHHHHHhhCCCCCEEEe
Confidence 3221 23556777777888876543
No 484
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=75.53 E-value=1.9 Score=39.96 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=21.6
Q ss_pred eeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
.-.||+||+.=..... ...........++|.-|++.+..
T Consensus 184 ~~~CPvCGs~P~~s~~-~~~~~~~G~RyL~CslC~teW~~ 222 (305)
T TIGR01562 184 RTLCPACGSPPVASMV-RQGGKETGLRYLSCSLCATEWHY 222 (305)
T ss_pred CCcCCCCCChhhhhhh-cccCCCCCceEEEcCCCCCcccc
Confidence 4479999994221100 00000122457889999988766
No 485
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=74.82 E-value=2 Score=27.04 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=20.4
Q ss_pred CeeeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003 70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK 106 (362)
Q Consensus 70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~ 106 (362)
-.+.|+.||..+.... ... ......|+.||.
T Consensus 4 Yey~C~~Cg~~fe~~~--~~~----~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 4 YEYRCEECGHEFEVLQ--SIS----EDDPVPCPECGS 34 (42)
T ss_pred EEEEeCCCCCEEEEEE--EcC----CCCCCcCCCCCC
Confidence 3578999998665432 111 135788999997
No 486
>PHA02998 RNA polymerase subunit; Provisional
Probab=74.78 E-value=1.9 Score=36.05 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=25.0
Q ss_pred CeeeCCCCCCCccc-ccCCCCccccccCCceecCccCccccc
Q 018003 70 NVLACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 70 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
....||.|+..-.. -...-.++++-+-..+.|..||+.+..
T Consensus 142 t~v~CPkCg~~~A~f~qlQTRSADEPmT~FYkC~~CG~~wkp 183 (195)
T PHA02998 142 YNTPCPNCKSKNTTPMMIQTRAADEPPLVRHACRDCKKHFKP 183 (195)
T ss_pred cCCCCCCCCCCceEEEEEeeccCCCCceEEEEcCCCCCccCC
Confidence 44789999983211 011122234444567899999998876
No 487
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.74 E-value=16 Score=34.96 Aligned_cols=94 Identities=14% Similarity=0.084 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHH-HHHHHHHHhhcCCCCCCCEEEEEe-cCCCCCCCCCcceEE
Q 018003 176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENM-LKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSIDAV 252 (362)
Q Consensus 176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~p~~~~~fD~V 252 (362)
.++.+||-.|+|. |..+..+++.. +.++++++.+++. .+.+++. .. -.++.. +...+.-..+.+|+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~~~~~~~~~~a~~l--------Ga-~~~i~~~~~~~v~~~~~~~D~v 246 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-GLRVTVISRSSEKEREAIDRL--------GA-DSFLVTTDSQKMKEAVGTMDFI 246 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-CCeEEEEeCChHHhHHHHHhC--------CC-cEEEcCcCHHHHHHhhCCCcEE
Confidence 4678899889875 66666666653 3479999887543 4444331 11 111110 100110001247888
Q ss_pred EecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
+-. ...+ ..+.+..+.|++||.++...
T Consensus 247 id~-----~G~~-~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 247 IDT-----VSAE-HALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred EEC-----CCcH-HHHHHHHHhhcCCCEEEEEc
Confidence 743 2233 35788889999999998764
No 488
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=74.49 E-value=1.8 Score=39.50 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=22.5
Q ss_pred eCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003 73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG 110 (362)
Q Consensus 73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~ 110 (362)
.||.||.++..... ...+.+.|+.|....+.
T Consensus 237 pC~~Cg~~I~~~~~-------~gR~ty~Cp~CQ~~~~~ 267 (269)
T PRK14811 237 PCPRCGTPIEKIVV-------GGRGTHFCPQCQPLRPL 267 (269)
T ss_pred CCCcCCCeeEEEEE-------CCCCcEECCCCcCCCCC
Confidence 59999998754321 12578999999987664
No 489
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=74.47 E-value=46 Score=30.86 Aligned_cols=97 Identities=18% Similarity=0.163 Sum_probs=59.9
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC----C--CCC
Q 018003 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----L--PFA 245 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~--p~~ 245 (362)
....++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++. ....++...-.. + ...
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~---------g~~~v~~~~~~~~~~~l~~~~~ 224 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFAREL---------GADDTINVGDEDVAARLRELTD 224 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHh---------CCCEEecCcccCHHHHHHHHhC
Confidence 3445688999998764 66666666652 35899998888887777542 111111111111 0 012
Q ss_pred CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
...+|+++.... . ...+.++.+.|+++|.++...
T Consensus 225 ~~~vd~vld~~g-----~-~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 225 GEGADVVIDATG-----N-PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEc
Confidence 345899985421 1 345788899999999988654
No 490
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=74.37 E-value=53 Score=31.01 Aligned_cols=95 Identities=20% Similarity=0.159 Sum_probs=56.3
Q ss_pred CCCCCeEEEEcCc-cchHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC------CCCC
Q 018003 175 PVLGGNIIDASCG-SGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFAS 246 (362)
Q Consensus 175 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------p~~~ 246 (362)
..++.+||-.|+| .|..+..+++.. +.. +++++.+++..+.+++. .-..++..+-... ....
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~-G~~~vi~~~~s~~~~~~~~~~---------g~~~v~~~~~~~~~~~l~~~~~~ 254 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAF-GASPIIAVDVRDEKLAKAKEL---------GATHTVNAAKEDAVAAIREITGG 254 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHh---------CCceEecCCcccHHHHHHHHhCC
Confidence 3567788877765 355555555553 235 99999988877776542 1111222111111 0123
Q ss_pred CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
..+|+|+.. +... ..+.++.+.|+++|.++...
T Consensus 255 ~~~d~vld~-----vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 255 RGVDVVVEA-----LGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCEEEEe-----CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 468988743 2332 36788899999999988764
No 491
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.32 E-value=9 Score=29.88 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=55.6
Q ss_pred CCeEEEEcCccch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-CCcceEEEec
Q 018003 178 GGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG 255 (362)
Q Consensus 178 ~~~vLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~ 255 (362)
.++|+|+|-|.=. .+..|+++|. .++++|+.+. .| ...+.++..|+.+.... -...|+|.+.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~--dv~atDI~~~---~a-----------~~g~~~v~DDitnP~~~iY~~A~lIYSi 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF--DVLATDINEK---TA-----------PEGLRFVVDDITNPNISIYEGADLIYSI 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC--cEEEEecccc---cC-----------cccceEEEccCCCccHHHhhCccceeec
Confidence 3499999998643 4667777775 9999999886 11 24788999999774321 1236777653
Q ss_pred ccccCCCCHHHHHHHHHhhccC-CcEEEEEEEcc
Q 018003 256 AAIHCWSSPSTGVAEISRVLRP-GGVFVGTTYIV 288 (362)
Q Consensus 256 ~vl~h~~d~~~~l~~i~r~Lkp-gG~li~~~~~~ 288 (362)
..|..+...+.++-+. |-.+++.....
T Consensus 78 ------RpppEl~~~ildva~aVga~l~I~pL~G 105 (129)
T COG1255 78 ------RPPPELQSAILDVAKAVGAPLYIKPLTG 105 (129)
T ss_pred ------CCCHHHHHHHHHHHHhhCCCEEEEecCC
Confidence 3444455555555444 33455554433
No 492
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=74.30 E-value=58 Score=30.23 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=58.7
Q ss_pred hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC---C-CC-
Q 018003 172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---L-PF- 244 (362)
Q Consensus 172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~-p~- 244 (362)
.....++.+||-.|+|. |..+..+++.. +.. +++++.++...+.+++. .-..++..+-.. + ..
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~~---------g~~~~~~~~~~~~~~~~~~~ 223 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVAREL---------GADDTINPKEEDVEKVRELT 223 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc---------CCCEEecCccccHHHHHHHh
Confidence 34455688999998765 66666666653 235 99999888777766442 111122111000 0 11
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
....+|+|+..- .....+..+.+.|+++|+++...
T Consensus 224 ~~~~~d~vld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 224 EGRGADLVIEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 223489988542 12346788899999999988764
No 493
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=74.29 E-value=48 Score=31.35 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=58.8
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC--CCC-----CC
Q 018003 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL-----PF 244 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~-----p~ 244 (362)
....++.+||=.|+|. |..+..+++.....+++++|.+++..+.+++. .-..++..+- ..+ ..
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~~~v~~~ 253 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF---------GVTEFVNPKDHDKPVQEVIAEM 253 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc---------CCceEEcccccchhHHHHHHHH
Confidence 3456788999998764 66666666653223799999999888888652 1111221110 000 01
Q ss_pred CCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEEE
Q 018003 245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY 286 (362)
Q Consensus 245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~~ 286 (362)
..+.+|+|+- .... ...+....+.+++| |++++...
T Consensus 254 ~~~~~d~vid-----~~G~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 254 TGGGVDYSFE-----CTGN-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred hCCCCCEEEE-----CCCC-hHHHHHHHHHhhcCCCEEEEECc
Confidence 1235787763 2222 34577778899996 99887543
No 494
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=74.01 E-value=42 Score=29.99 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=58.3
Q ss_pred cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcce
Q 018003 173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID 250 (362)
Q Consensus 173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD 250 (362)
....++.+||-.|+|. |..+..+++.. +.. +++++.+++..+.+++. .. ...+ ....- . ......+|
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~-g~-----~~~~--~~~~~-~-~~~~~~~d 161 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEAL-GP-----ADPV--AADTA-D-EIGGRGAD 161 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHc-CC-----Cccc--cccch-h-hhcCCCCC
Confidence 4455688898888865 66666566553 235 99999998888776653 00 0111 10000 0 01234589
Q ss_pred EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
+|+..-. ....+.+..+.|+++|.++...
T Consensus 162 ~vl~~~~------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASG------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccC------ChHHHHHHHHHhcCCcEEEEEe
Confidence 8875321 1236788899999999998653
No 495
>PRK05978 hypothetical protein; Provisional
Probab=73.87 E-value=2.3 Score=34.86 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=24.0
Q ss_pred ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV 111 (362)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~ 111 (362)
+....-..+||.||..-...+.- .-.-+|+.||.-|...
T Consensus 27 ~~~rGl~grCP~CG~G~LF~g~L--------kv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 27 AMWRGFRGRCPACGEGKLFRAFL--------KPVDHCAACGEDFTHH 65 (148)
T ss_pred HHHHHHcCcCCCCCCCccccccc--------ccCCCccccCCccccC
Confidence 44455567899999843222211 1245899999877663
No 496
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=73.68 E-value=26 Score=31.57 Aligned_cols=132 Identities=14% Similarity=0.052 Sum_probs=79.6
Q ss_pred CCCeEEEEcCccchHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHH------------Hhhc-C------
Q 018003 177 LGGNIIDASCGSGLFSRIFAKSG------------LFSLVVALDYSENMLKQCYEF------------VQQE-S------ 225 (362)
Q Consensus 177 ~~~~vLDiGcG~G~~~~~l~~~~------------~~~~v~gvD~s~~~~~~a~~~------------~~~~-~------ 225 (362)
....|+|+|-|+|.....+.+.. ....++.++.++.....+... +... .
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 34589999999999876665432 123567777665432222210 0000 0
Q ss_pred ---C-CCCCCEEEEEecCCC-CCCCCC---cceEEEecccccCCCCHH----HHHHHHHhhccCCcEEEEEEEccCCCCc
Q 018003 226 ---N-FPKENFLLVRADISR-LPFASS---SIDAVHAGAAIHCWSSPS----TGVAEISRVLRPGGVFVGTTYIVDGPFN 293 (362)
Q Consensus 226 ---~-~~~~~~~~~~~d~~~-~p~~~~---~fD~V~~~~vl~h~~d~~----~~l~~i~r~LkpgG~li~~~~~~~~~~~ 293 (362)
. .+.....++.+|+.. +|-.+. .+|+.+.. ++.-..||. .++.++++..+|||.+.--
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflD-gFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~--------- 207 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLD-GFRPVKNPEMWEDELLNLMARIPYRDPTLATF--------- 207 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCcccccccCccEEecC-CccccCChhhccHHHHHHHHhhcCCCCceech---------
Confidence 0 024566778888844 332233 57887743 333445663 7899999999999987611
Q ss_pred chhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEece
Q 018003 294 LIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGH 343 (362)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~ 343 (362)
-+.--+++-|+++||++.+..-+|.
T Consensus 208 -------------------------ssA~~vRr~L~~aGF~v~~r~g~gr 232 (252)
T COG4121 208 -------------------------AAAIAVRRRLEQAGFTVEKRTGRGK 232 (252)
T ss_pred -------------------------HHHHHHHHHHHHcCceeeecCCccc
Confidence 1122478889999999988654443
No 497
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=73.62 E-value=42 Score=31.26 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=61.5
Q ss_pred hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-e---cCCC-C-
Q 018003 171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-A---DISR-L- 242 (362)
Q Consensus 171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~---d~~~-~- 242 (362)
+.....+|.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++.+.. .. ++. . +... +
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa------~~--vi~~~~~~~~~~~i~ 215 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGF------DD--AFNYKEEPDLDAALK 215 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCC------ce--eEEcCCcccHHHHHH
Confidence 3345567889999886 4577777777653 34899999888887777663211 11 111 1 1110 0
Q ss_pred CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003 243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285 (362)
Q Consensus 243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~ 285 (362)
....+.+|+|+-. ... ..+.+..+.|+++|+++...
T Consensus 216 ~~~~~gvd~v~d~-----~g~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 216 RYFPNGIDIYFDN-----VGG--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred HhCCCCcEEEEEC-----CCH--HHHHHHHHHhccCcEEEEec
Confidence 0112468888743 222 46788999999999998653
No 498
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=73.52 E-value=2.1 Score=33.62 Aligned_cols=33 Identities=12% Similarity=0.232 Sum_probs=23.8
Q ss_pred ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003 65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108 (362)
Q Consensus 65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~ 108 (362)
.........|+.|+..+.... ..+.||.||...
T Consensus 64 I~~~p~~~~C~~Cg~~~~~~~-----------~~~~CP~Cgs~~ 96 (115)
T TIGR00100 64 IEDEPVECECEDCSEEVSPEI-----------DLYRCPKCHGIM 96 (115)
T ss_pred EEeeCcEEEcccCCCEEecCC-----------cCccCcCCcCCC
Confidence 555566789999997665533 357899999754
No 499
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=73.48 E-value=1.2 Score=29.64 Aligned_cols=12 Identities=42% Similarity=1.032 Sum_probs=6.5
Q ss_pred eCCCCCCCcccc
Q 018003 73 ACPICYKPLTWI 84 (362)
Q Consensus 73 ~CP~C~~~l~~~ 84 (362)
+||+|+.+|...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999988654
No 500
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=73.47 E-value=7.1 Score=39.36 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=59.5
Q ss_pred CCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC----CC----CC
Q 018003 175 PVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LP----FA 245 (362)
Q Consensus 175 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~p----~~ 245 (362)
..++..|||+||..|.++....+..| +.-|+|+|+-+-- +.+++.-.+.|+.. .+ ..
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik--------------p~~~c~t~v~dIttd~cr~~l~k~l~ 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK--------------PIPNCDTLVEDITTDECRSKLRKILK 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc--------------cCCccchhhhhhhHHHHHHHHHHHHH
Confidence 34578999999999999999888754 4578999987621 13344444444432 11 11
Q ss_pred CCcceEEEecccccCC-----CCH-------HHHHHHHHhhccCCcEEEEEEEc
Q 018003 246 SSSIDAVHAGAAIHCW-----SSP-------STGVAEISRVLRPGGVFVGTTYI 287 (362)
Q Consensus 246 ~~~fD~V~~~~vl~h~-----~d~-------~~~l~~i~r~LkpgG~li~~~~~ 287 (362)
....|+|+.-.+ +.+ .|. ..+|+-....|+-||.++--.+.
T Consensus 108 t~~advVLhDga-pnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr 160 (780)
T KOG1098|consen 108 TWKADVVLHDGA-PNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR 160 (780)
T ss_pred hCCCcEEeecCC-CccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence 234577775433 111 111 14566677889999996644443
Done!