Query 018004
Match_columns 362
No_of_seqs 225 out of 1677
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.4E-48 5.2E-53 379.3 35.5 328 9-353 7-356 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 2.2E-45 4.7E-50 356.3 27.0 268 68-354 39-316 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 4.4E-43 9.6E-48 344.3 26.6 226 69-334 114-356 (482)
4 cd05478 pepsin_A Pepsin A, asp 100.0 7.4E-41 1.6E-45 315.7 24.8 220 70-335 5-236 (317)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.8E-40 3.8E-45 314.3 25.1 235 74-331 2-257 (326)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 1.4E-40 3E-45 315.0 23.6 219 71-333 2-234 (325)
7 cd05477 gastricsin Gastricsins 100.0 5.9E-40 1.3E-44 309.8 24.9 219 73-336 1-232 (318)
8 cd05486 Cathespin_E Cathepsin 100.0 4E-40 8.8E-45 310.6 21.5 211 76-334 1-227 (316)
9 cd06098 phytepsin Phytepsin, a 100.0 1.4E-39 3E-44 307.0 23.2 212 70-328 5-233 (317)
10 cd06097 Aspergillopepsin_like 100.0 2E-39 4.2E-44 300.6 22.6 212 76-332 1-225 (278)
11 cd05488 Proteinase_A_fungi Fun 100.0 4E-39 8.6E-44 304.3 24.5 217 70-335 5-235 (320)
12 cd05487 renin_like Renin stimu 100.0 4.9E-39 1.1E-43 304.4 23.6 220 70-335 3-237 (326)
13 cd05485 Cathepsin_D_like Cathe 100.0 4.6E-39 1E-43 304.9 22.8 220 70-334 6-239 (329)
14 PTZ00147 plasmepsin-1; Provisi 100.0 2.1E-38 4.6E-43 309.1 23.7 216 70-334 134-361 (453)
15 cd05472 cnd41_like Chloroplast 100.0 3.2E-38 7E-43 295.5 23.2 213 75-354 1-221 (299)
16 PTZ00013 plasmepsin 4 (PM4); P 100.0 7.2E-38 1.6E-42 304.8 22.4 214 70-334 133-360 (450)
17 cd05473 beta_secretase_like Be 100.0 2.4E-37 5.2E-42 297.2 24.6 218 75-336 3-242 (364)
18 cd05471 pepsin_like Pepsin-lik 100.0 6.7E-37 1.4E-41 283.6 24.3 219 76-337 1-234 (283)
19 cd05489 xylanase_inhibitor_I_l 100.0 1.1E-36 2.4E-41 291.1 23.9 250 82-354 2-280 (362)
20 cd05475 nucellin_like Nucellin 100.0 3.5E-36 7.5E-41 278.0 22.5 191 74-324 1-196 (273)
21 cd05476 pepsin_A_like_plant Ch 100.0 5.8E-35 1.3E-39 268.8 19.9 184 75-324 1-195 (265)
22 PF00026 Asp: Eukaryotic aspar 100.0 8.5E-35 1.8E-39 274.0 14.0 218 75-337 1-231 (317)
23 cd05474 SAP_like SAPs, pepsin- 100.0 2.5E-33 5.5E-38 261.7 19.8 186 75-336 2-209 (295)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.6E-30 3.5E-35 221.6 15.4 162 76-261 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 1.1E-22 2.4E-27 161.6 11.9 108 78-223 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.0 6.2E-10 1.3E-14 94.6 7.5 77 278-354 1-82 (161)
27 cd05483 retropepsin_like_bacte 98.0 2.3E-05 4.9E-10 59.9 6.5 93 75-225 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.0 0.028 6.1E-07 45.1 7.1 31 72-104 8-38 (121)
29 PF13650 Asp_protease_2: Aspar 95.6 0.088 1.9E-06 39.2 7.9 26 78-105 1-26 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.0 0.41 8.9E-06 38.5 8.4 33 72-106 13-45 (124)
31 cd05484 retropepsin_like_LTR_2 93.1 0.12 2.6E-06 39.0 3.6 29 76-106 1-29 (91)
32 PF13650 Asp_protease_2: Aspar 90.2 0.4 8.7E-06 35.5 3.7 29 286-327 3-31 (90)
33 PF13975 gag-asp_proteas: gag- 90.0 0.57 1.2E-05 33.7 4.2 34 72-107 5-38 (72)
34 PF13975 gag-asp_proteas: gag- 87.9 0.92 2E-05 32.6 4.1 30 285-327 12-41 (72)
35 TIGR02281 clan_AA_DTGA clan AA 87.7 0.73 1.6E-05 36.9 3.8 35 277-327 10-44 (121)
36 cd05484 retropepsin_like_LTR_2 87.2 0.9 2E-05 34.1 3.9 32 285-329 4-35 (91)
37 COG3577 Predicted aspartyl pro 87.0 4.1 8.8E-05 35.5 8.0 76 71-187 101-176 (215)
38 cd05483 retropepsin_like_bacte 85.9 1.4 3E-05 32.9 4.3 32 284-328 5-36 (96)
39 PF00077 RVP: Retroviral aspar 85.8 1.2 2.5E-05 34.0 3.9 28 77-106 7-34 (100)
40 cd06095 RP_RTVL_H_like Retrope 83.7 1.3 2.9E-05 32.9 3.3 29 286-327 3-31 (86)
41 cd05479 RP_DDI RP_DDI; retrope 80.8 2.2 4.7E-05 34.2 3.7 30 286-328 21-50 (124)
42 cd06095 RP_RTVL_H_like Retrope 79.0 2.6 5.6E-05 31.3 3.4 26 79-106 2-27 (86)
43 PF00077 RVP: Retroviral aspar 77.2 2.2 4.7E-05 32.5 2.6 29 284-325 8-36 (100)
44 cd05482 HIV_retropepsin_like R 73.9 5.1 0.00011 30.0 3.7 26 79-106 2-27 (87)
45 PF09668 Asp_protease: Asparty 72.7 4.3 9.4E-05 32.6 3.3 31 284-327 27-57 (124)
46 cd05481 retropepsin_like_LTR_1 71.4 4.3 9.4E-05 30.7 2.9 21 308-328 13-33 (93)
47 PF11925 DUF3443: Protein of u 68.1 9.6 0.00021 36.3 5.0 96 90-225 43-148 (370)
48 COG3577 Predicted aspartyl pro 66.2 13 0.00029 32.4 5.0 36 276-327 103-138 (215)
49 TIGR03698 clan_AA_DTGF clan AA 54.8 8.3 0.00018 30.0 1.8 21 307-327 18-39 (107)
50 PF12384 Peptidase_A2B: Ty3 tr 52.4 20 0.00043 30.2 3.6 28 75-104 34-61 (177)
51 COG5550 Predicted aspartyl pro 51.8 9.2 0.0002 30.5 1.6 21 308-328 29-50 (125)
52 PF08284 RVP_2: Retroviral asp 51.4 32 0.00069 28.0 4.8 36 279-327 19-54 (135)
53 cd05470 pepsin_retropepsin_lik 50.3 13 0.00028 28.4 2.3 17 308-324 14-30 (109)
54 PF09668 Asp_protease: Asparty 47.4 33 0.00072 27.5 4.1 37 73-111 22-58 (124)
55 cd05480 NRIP_C NRIP_C; putativ 45.3 28 0.00061 26.8 3.2 29 286-327 3-31 (103)
56 PF08194 DIM: DIM protein; In 40.1 50 0.0011 20.3 3.1 20 9-28 8-27 (36)
57 TIGR03698 clan_AA_DTGF clan AA 39.5 41 0.00089 26.1 3.5 26 78-103 2-32 (107)
58 cd00303 retropepsin_like Retro 39.1 53 0.0011 22.5 4.0 20 308-327 12-31 (92)
59 cd05481 retropepsin_like_LTR_1 37.6 28 0.00062 26.2 2.3 23 80-104 3-26 (93)
60 PF12384 Peptidase_A2B: Ty3 tr 37.1 56 0.0012 27.6 4.0 24 307-330 47-70 (177)
61 PTZ00459 mucin-associated surf 34.3 26 0.00056 32.7 1.9 10 1-10 1-12 (291)
62 cd06097 Aspergillopepsin_like 32.3 37 0.00081 31.0 2.7 16 308-323 16-31 (278)
63 cd05475 nucellin_like Nucellin 31.4 68 0.0015 29.2 4.2 32 74-105 157-194 (273)
64 cd06096 Plasmepsin_5 Plasmepsi 28.1 64 0.0014 30.2 3.5 16 308-323 19-34 (326)
65 PLN03146 aspartyl protease fam 26.4 66 0.0014 31.7 3.4 14 308-321 100-113 (431)
66 cd05476 pepsin_A_like_plant Ch 22.6 96 0.0021 28.0 3.5 18 88-105 176-193 (265)
67 cd05474 SAP_like SAPs, pepsin- 22.2 96 0.0021 28.3 3.5 13 308-320 18-30 (295)
68 PF15240 Pro-rich: Proline-ric 21.7 58 0.0013 27.9 1.6 16 7-22 1-16 (179)
69 KOG1339 Aspartyl protease [Pos 21.5 73 0.0016 30.9 2.6 18 308-325 62-79 (398)
70 PF08284 RVP_2: Retroviral asp 21.2 1.4E+02 0.003 24.2 3.8 30 74-105 20-49 (135)
71 cd06098 phytepsin Phytepsin, a 21.1 95 0.0021 29.0 3.2 16 308-323 26-41 (317)
72 cd05478 pepsin_A Pepsin A, asp 20.5 1E+02 0.0023 28.6 3.4 15 308-322 26-40 (317)
73 PF00026 Asp: Eukaryotic aspar 20.5 1E+02 0.0022 28.3 3.2 16 308-323 17-32 (317)
74 cd05489 xylanase_inhibitor_I_l 20.3 1.2E+02 0.0025 29.2 3.7 16 90-105 231-246 (362)
75 PTZ00165 aspartyl protease; Pr 20.0 64 0.0014 32.4 1.9 17 308-324 136-152 (482)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.4e-48 Score=379.28 Aligned_cols=328 Identities=29% Similarity=0.461 Sum_probs=249.6
Q ss_pred HHHHHHHHHHhccccCCceeEEEEEecCC------cc----ccHHHHHHHHHHHHHHHhhc--cCCCCCCCCCCCCcccE
Q 018004 9 LCIVLIATAAVGGVSSNHGVFSVKYRYAG------RE----RSLSLLKEHDARRQQRILAG--VDLPLGGSSRPDGVGLY 76 (362)
Q Consensus 9 l~~~l~a~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~Y 76 (362)
+++..+.++++..+.....+++|.|+.++ +. ..+.+..+|+++|++++.+. ...++. .+....+++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~Y 85 (431)
T PLN03146 7 LCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQ-SDLISNGGEY 85 (431)
T ss_pred HHHHHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCccc-cCcccCCccE
Confidence 34444455555566677788998887643 11 22445566666676665432 222332 2223467899
Q ss_pred EEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCCCCC
Q 018004 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANT 156 (362)
Q Consensus 77 ~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~~~ 156 (362)
+++|.||||+|++.|+|||||+++||+|.+|..|..+. ++.|||++|+||+.++|+++.|..... ...|..++
T Consensus 86 ~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~-----~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~~ 158 (431)
T PLN03146 86 LMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV-----SPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDEN 158 (431)
T ss_pred EEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC-----CCcccCCCCCCCcccCCCCcccccCCC--CCCCCCCC
Confidence 99999999999999999999999999999999998653 378999999999999999999976543 23576666
Q ss_pred CCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCCcHHHHhhh
Q 018004 157 SCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLAS 236 (362)
Q Consensus 157 ~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~~ 236 (362)
.|.|.+.|++|+.+.|.+++|+|.|++.... ...++++.|||+....+.|. ...+||||||++..|++.||..
T Consensus 159 ~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sql~~ 231 (431)
T PLN03146 159 TCTYSYSYGDGSFTKGNLAVETLTIGSTSGR---PVSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQLGS 231 (431)
T ss_pred CCeeEEEeCCCCceeeEEEEEEEEeccCCCC---cceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHHhhH
Confidence 7999999999998899999999999875322 12467999999998776552 2479999999999999999976
Q ss_pred cCCCCCceEEeccCC----CCcceEEeCCCCC---CCceEecCcCC--CCceEEEEeEEEEcCEEeeCCCcccccCCCcc
Q 018004 237 SGGVRKMFAHCLDGI----NGGGIFAIGHVVQ---PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKG 307 (362)
Q Consensus 237 ~~~i~~~Fs~~l~~~----~~~G~l~fGg~d~---~~~~~~p~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 307 (362)
+ +.++||+||.+. ...|.|+||+... ..+.|+|++.+ ..+|.|.|++|+||++.+.++...|...+...
T Consensus 232 ~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~ 309 (431)
T PLN03146 232 S--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGN 309 (431)
T ss_pred h--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCc
Confidence 3 556999999653 2479999999542 34889999743 46899999999999999887666553233467
Q ss_pred EEEcccccccccChHHHHHHHHHHHHhCCCCccc-ccCCcCceeecc
Q 018004 308 TIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVH-TVHDEYTCFQYS 353 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~~~~i~~~~~~~~~~~~~~-~~~~~~~C~~~~ 353 (362)
+||||||++++||+++|++|.++|.++++..... ....+..||+.+
T Consensus 310 ~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~ 356 (431)
T PLN03146 310 IIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSST 356 (431)
T ss_pred EEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCC
Confidence 9999999999999999999999999988643322 222346899854
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-45 Score=356.29 Aligned_cols=268 Identities=36% Similarity=0.641 Sum_probs=221.8
Q ss_pred CCCCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC-CCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCC
Q 018004 68 SRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK-ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (362)
Q Consensus 68 ~~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~-~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~ 146 (362)
...+..++|+++|.||||||+|.|+|||||+++||+|..|. .|..+.. +.|||++|+|++.+.|.++.|.....
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~-----~~f~p~~SSt~~~~~c~~~~c~~~~~ 113 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHN-----PIFDPSASSTYKSVGCSSPRCKSLPQ 113 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCC-----CccCccccccccccCCCCcccccccc
Confidence 34567889999999999999999999999999999999999 7876422 45999999999999999999998874
Q ss_pred CCCCCCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCC
Q 018004 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (362)
Q Consensus 147 ~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~ 226 (362)
. |.+++.|.|.+.|++|+.+.|.+++|+|+|++.+ ....+++.|||+..+.+. .... .+.+||||||+.
T Consensus 114 ~----~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~-~~~dGIlGLg~~ 182 (398)
T KOG1339|consen 114 S----CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLF-AAFDGILGLGRG 182 (398)
T ss_pred C----cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccc-cccceEeecCCC
Confidence 4 8888999999999997777999999999999843 123568999999998765 2212 578999999999
Q ss_pred CCcHHHHhhhcCCCCCceEEeccCCC----CcceEEeCCCCCC----CceEecCcCCCC-ceEEEEeEEEEcCEEeeCCC
Q 018004 227 NSSMISQLASSGGVRKMFAHCLDGIN----GGGIFAIGHVVQP----EVNKTPLVPNQP-HYSINMTAVQVGLDFLNLPT 297 (362)
Q Consensus 227 ~~s~~~~l~~~~~i~~~Fs~~l~~~~----~~G~l~fGg~d~~----~~~~~p~~~~~~-~w~v~l~~i~v~~~~~~~~~ 297 (362)
..+++.|+.......++||+||.+.. .+|.|+||++|+. .+.|+||+.... +|.|.+.+|+|+++. .++.
T Consensus 183 ~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~ 261 (398)
T KOG1339|consen 183 SLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGS 261 (398)
T ss_pred CccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCc
Confidence 99999999998777679999999873 4799999999964 478999986544 999999999999977 5555
Q ss_pred cccccCCCccEEEcccccccccChHHHHHHHHHHHHhCCCCcccccCCcCceeeccC
Q 018004 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSE 354 (362)
Q Consensus 298 ~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~ 354 (362)
..+.. +..++|+||||++++||.++|++|.++|+++++. ..........||+.+.
T Consensus 262 ~~~~~-~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~-~~~~~~~~~~C~~~~~ 316 (398)
T KOG1339|consen 262 SLFCT-DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV-VGTDGEYFVPCFSIST 316 (398)
T ss_pred ceEec-CCCCEEEECCcceeeccHHHHHHHHHHHHhheec-cccCCceeeecccCCC
Confidence 54432 2688999999999999999999999999998721 1111112348998765
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=4.4e-43 Score=344.32 Aligned_cols=226 Identities=22% Similarity=0.332 Sum_probs=187.5
Q ss_pred CCCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCC
Q 018004 69 RPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGP 148 (362)
Q Consensus 69 ~~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~ 148 (362)
.++.+.+|+++|+||||||+|.|+|||||++|||++..|..| .|..++.|||++|+|++.+.+..
T Consensus 114 ~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~-----~C~~~~~yd~s~SSTy~~~~~~~---------- 178 (482)
T PTZ00165 114 LNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSG-----GCAPHRKFDPKKSSTYTKLKLGD---------- 178 (482)
T ss_pred ccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcc-----cccccCCCCccccCCcEecCCCC----------
Confidence 478899999999999999999999999999999999998742 23344799999999999843211
Q ss_pred CCCCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCC-
Q 018004 149 LTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN- 227 (362)
Q Consensus 149 ~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~- 227 (362)
....+.+.|++|+. .|.+++|+|.|++.. ++++.||+++..++... ...++|||||||++.
T Consensus 179 -------~~~~~~i~YGsGs~-~G~l~~DtV~ig~l~--------i~~q~FG~a~~~s~~~f--~~~~~DGILGLg~~~~ 240 (482)
T PTZ00165 179 -------ESAETYIQYGTGEC-VLALGKDTVKIGGLK--------VKHQSIGLAIEESLHPF--ADLPFDGLVGLGFPDK 240 (482)
T ss_pred -------ccceEEEEeCCCcE-EEEEEEEEEEECCEE--------EccEEEEEEEecccccc--ccccccceeecCCCcc
Confidence 11257799999986 899999999999864 55899999998755321 245689999999875
Q ss_pred --------CcHHHHhhhcCCC-CCceEEeccCC-CCcceEEeCCCCC------CCceEecCcCCCCceEEEEeEEEEcCE
Q 018004 228 --------SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ------PEVNKTPLVPNQPHYSINMTAVQVGLD 291 (362)
Q Consensus 228 --------~s~~~~l~~~~~i-~~~Fs~~l~~~-~~~G~l~fGg~d~------~~~~~~p~~~~~~~w~v~l~~i~v~~~ 291 (362)
.+++++|++||+| +++||+||.+. +.+|+|+|||+|+ +++.|+|+. ...+|+|.+++|+|+++
T Consensus 241 s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~vgg~ 319 (482)
T PTZ00165 241 DFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDILIDGK 319 (482)
T ss_pred cccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEEECCE
Confidence 3589999999999 69999999875 4579999999984 358999996 56899999999999998
Q ss_pred EeeCCCcccccCCCccEEEcccccccccChHHHHHHHHHHHHh
Q 018004 292 FLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQ 334 (362)
Q Consensus 292 ~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~ 334 (362)
.+... ...+.+|+||||+++++|++++++|.+++++.
T Consensus 320 ~~~~~------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~ 356 (482)
T PTZ00165 320 SLGFC------DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE 356 (482)
T ss_pred Eeeec------CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc
Confidence 76542 13467999999999999999999999999865
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=7.4e-41 Score=315.75 Aligned_cols=220 Identities=27% Similarity=0.416 Sum_probs=186.1
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCC
Q 018004 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (362)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~ 149 (362)
++.+..|+++|.||||+|++.|+|||||+++||+|..|..|. |..++.|||++|+|++..
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~-----c~~~~~f~~~~Sst~~~~--------------- 64 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQA-----CSNHNRFNPRQSSTYQST--------------- 64 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccc-----ccccCcCCCCCCcceeeC---------------
Confidence 567889999999999999999999999999999998887432 233479999999999873
Q ss_pred CCCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCC-
Q 018004 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (362)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~- 228 (362)
.+.+.+.|++|+ +.|.+++|+|+|++.. ++++.|||+....+.+. .....+||||||++..
T Consensus 65 -------~~~~~~~yg~gs-~~G~~~~D~v~ig~~~--------i~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~s 126 (317)
T cd05478 65 -------GQPLSIQYGTGS-MTGILGYDTVQVGGIS--------DTNQIFGLSETEPGSFF--YYAPFDGILGLAYPSIA 126 (317)
T ss_pred -------CcEEEEEECCce-EEEEEeeeEEEECCEE--------ECCEEEEEEEecCcccc--ccccccceeeeccchhc
Confidence 468999999998 5999999999999864 45899999987765542 2335799999998643
Q ss_pred -----cHHHHhhhcCCC-CCceEEeccCCC-CcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEeeCCC
Q 018004 229 -----SMISQLASSGGV-RKMFAHCLDGIN-GGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (362)
Q Consensus 229 -----s~~~~l~~~~~i-~~~Fs~~l~~~~-~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (362)
+++++|+++|+| +++||+||.+.. ..|+|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.+...
T Consensus 127 ~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~~~- 204 (317)
T cd05478 127 SSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVACS- 204 (317)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEccC-
Confidence 589999999999 699999999863 468999999985 568999996 5689999999999999987532
Q ss_pred cccccCCCccEEEcccccccccChHHHHHHHHHHHHhC
Q 018004 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQ 335 (362)
Q Consensus 298 ~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~ 335 (362)
.+..++|||||+++++|++++++|.+++++..
T Consensus 205 ------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~ 236 (317)
T cd05478 205 ------GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ 236 (317)
T ss_pred ------CCCEEEECCCchhhhCCHHHHHHHHHHhCCcc
Confidence 24569999999999999999999999987653
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.8e-40 Score=314.26 Aligned_cols=235 Identities=27% Similarity=0.496 Sum_probs=190.1
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCC
Q 018004 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (362)
Q Consensus 74 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~ 153 (362)
++|+++|.||||+|++.|+|||||+++||+|..|..|..+. .+.|||++|+|++.+.|.+..|.. ...|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~-----~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~ 71 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM-----EPPYNLNNSITSSILYCDCNKCCY-----CLSCL 71 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC-----CCCcCcccccccccccCCCccccc-----cCcCC
Confidence 58999999999999999999999999999999999987543 368999999999999999999953 23453
Q ss_pred CCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCC----c
Q 018004 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----S 229 (362)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~----s 229 (362)
++.|.|.+.|++|+.+.|.+++|+|.|++....+ ......++.|||+..+.+.|. ....+||||||+... +
T Consensus 72 -~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~---~~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 72 -NNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFL---TQQATGILGLSLTKNNGLPT 146 (326)
T ss_pred -CCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccc---ccccceEEEccCCcccccCc
Confidence 4679999999999877999999999998765321 001123578999998776653 356899999999763 2
Q ss_pred HHHHhhhcCCC-C--CceEEeccCCCCcceEEeCCCCC--------------CCceEecCcCCCCceEEEEeEEEEcCEE
Q 018004 230 MISQLASSGGV-R--KMFAHCLDGINGGGIFAIGHVVQ--------------PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (362)
Q Consensus 230 ~~~~l~~~~~i-~--~~Fs~~l~~~~~~G~l~fGg~d~--------------~~~~~~p~~~~~~~w~v~l~~i~v~~~~ 292 (362)
...+|.+++.+ . ++||+||.+ ..|.|+||++|+ +++.|+|+.. ..+|.|.+++|+|+++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~--~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~-~~~y~v~l~~i~vg~~~ 223 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSE--DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR-KYYYYVKLEGLSVYGTT 223 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcC--CCeEEEECccChhhhcccccccccccCCceEEeccC-CceEEEEEEEEEEcccc
Confidence 44456677666 4 899999986 379999999985 4578999974 48999999999999876
Q ss_pred eeCCCcccccCCCccEEEcccccccccChHHHHHHHHHH
Q 018004 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKI 331 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~ 331 (362)
.... ......++|||||++++||++++++|.+++
T Consensus 224 ~~~~-----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~ 257 (326)
T cd06096 224 SNSG-----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF 257 (326)
T ss_pred ccee-----cccCCCEEEeCCCCcccCCHHHHHHHHhhc
Confidence 1100 123567999999999999999999999987
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.4e-40 Score=315.02 Aligned_cols=219 Identities=26% Similarity=0.389 Sum_probs=181.6
Q ss_pred CCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCC
Q 018004 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (362)
Q Consensus 71 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~ 150 (362)
+.+.+|+++|.||||+|++.|+|||||+++||+|..|..|. ..|..++.|+|++|+|++.
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~C~~~~~y~~~~SsT~~~----------------- 61 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD---IACWLHHKYNSSKSSTYVK----------------- 61 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC---ccccCcCcCCcccCcceee-----------------
Confidence 45789999999999999999999999999999998887431 2344457999999999987
Q ss_pred CCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCC--
Q 018004 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS-- 228 (362)
Q Consensus 151 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~-- 228 (362)
..+.|.+.|++|+. .|.+++|+|+|++.. +.++.||+++...+... .....+||||||++..
T Consensus 62 -----~~~~~~i~Yg~G~~-~G~~~~D~v~~g~~~--------~~~~~Fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~ 125 (325)
T cd05490 62 -----NGTEFAIQYGSGSL-SGYLSQDTVSIGGLQ--------VEGQLFGEAVKQPGITF--IAAKFDGILGMAYPRISV 125 (325)
T ss_pred -----CCcEEEEEECCcEE-EEEEeeeEEEECCEE--------EcCEEEEEEeeccCCcc--cceeeeEEEecCCccccc
Confidence 34799999999984 999999999999864 45899999987755321 2346799999998654
Q ss_pred ----cHHHHhhhcCCC-CCceEEeccCC---CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEeeCC
Q 018004 229 ----SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (362)
Q Consensus 229 ----s~~~~l~~~~~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~ 296 (362)
+++++|++||+| +++||+||.+. ...|+|+|||+|+ +++.|+|+. ...+|.|++++|+|+++....
T Consensus 126 ~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~~- 203 (325)
T cd05490 126 DGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGLTLC- 203 (325)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCeeeec-
Confidence 588999999999 69999999864 2369999999996 568999986 568999999999998764321
Q ss_pred CcccccCCCccEEEcccccccccChHHHHHHHHHHHH
Q 018004 297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIIS 333 (362)
Q Consensus 297 ~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~ 333 (362)
.....+||||||+++++|++++++|.+++++
T Consensus 204 ------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~ 234 (325)
T cd05490 204 ------KGGCEAIVDTGTSLITGPVEEVRALQKAIGA 234 (325)
T ss_pred ------CCCCEEEECCCCccccCCHHHHHHHHHHhCC
Confidence 2245699999999999999999999998865
No 7
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=5.9e-40 Score=309.76 Aligned_cols=219 Identities=26% Similarity=0.420 Sum_probs=183.6
Q ss_pred cccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCC
Q 018004 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDC 152 (362)
Q Consensus 73 ~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c 152 (362)
+..|+++|.||||+|++.|+|||||+++||+|..|..+ .|..++.|||++|+|++.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~-----~C~~~~~f~~~~SsT~~~------------------- 56 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQ-----ACTNHTKFNPSQSSTYST------------------- 56 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCc-----cccccCCCCcccCCCceE-------------------
Confidence 35899999999999999999999999999999988742 133347999999999987
Q ss_pred CCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCC-----
Q 018004 153 TANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN----- 227 (362)
Q Consensus 153 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~----- 227 (362)
..|.|++.|++|+. .|.+++|+|+|++.. ++++.|||+....+... .....+||||||++.
T Consensus 57 ---~~~~~~~~Yg~Gs~-~G~~~~D~i~~g~~~--------i~~~~Fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~~~ 122 (318)
T cd05477 57 ---NGETFSLQYGSGSL-TGIFGYDTVTVQGII--------ITNQEFGLSETEPGTNF--VYAQFDGILGLAYPSISAGG 122 (318)
T ss_pred ---CCcEEEEEECCcEE-EEEEEeeEEEECCEE--------EcCEEEEEEEecccccc--cccceeeEeecCcccccccC
Confidence 45799999999985 999999999999764 45899999987654311 224579999999853
Q ss_pred -CcHHHHhhhcCCC-CCceEEeccCC--CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEeeCCCcc
Q 018004 228 -SSMISQLASSGGV-RKMFAHCLDGI--NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDV 299 (362)
Q Consensus 228 -~s~~~~l~~~~~i-~~~Fs~~l~~~--~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 299 (362)
.+++++|+++|.| +++||+||.+. ...|.|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.+....
T Consensus 123 ~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~-- 199 (318)
T cd05477 123 ATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGWCS-- 199 (318)
T ss_pred CCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEecccC--
Confidence 4799999999999 69999999875 2469999999995 458999996 56899999999999998764322
Q ss_pred cccCCCccEEEcccccccccChHHHHHHHHHHHHhCC
Q 018004 300 FGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQP 336 (362)
Q Consensus 300 ~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~~ 336 (362)
.+..+||||||+++++|++++++|+++++++..
T Consensus 200 ----~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~ 232 (318)
T cd05477 200 ----QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD 232 (318)
T ss_pred ----CCceeeECCCCccEECCHHHHHHHHHHhCCccc
Confidence 235699999999999999999999999987654
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4e-40 Score=310.61 Aligned_cols=211 Identities=27% Similarity=0.428 Sum_probs=178.2
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCC
Q 018004 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (362)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~--~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~ 153 (362)
|+++|+||||+|+++|+|||||+++||++..|. .|.. ++.|||++|+|++.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~-------~~~y~~~~SsT~~~-------------------- 53 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTK-------HNRFQPSESSTYVS-------------------- 53 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCc-------cceECCCCCccccc--------------------
Confidence 899999999999999999999999999999886 4543 47899999999987
Q ss_pred CCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCC-----
Q 018004 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----- 228 (362)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~----- 228 (362)
..+.+.+.|++|+. .|.+++|+|+|++.. +.++.||++....+... ....++||||||++..
T Consensus 54 --~~~~~~i~Yg~g~~-~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 54 --NGEAFSIQYGTGSL-TGIIGIDQVTVEGIT--------VQNQQFAESVSEPGSTF--QDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred --CCcEEEEEeCCcEE-EEEeeecEEEECCEE--------EcCEEEEEeeccCcccc--cccccceEeccCchhhccCCC
Confidence 35799999999974 999999999998754 45899999877654321 2346899999998754
Q ss_pred -cHHHHhhhcCCC-CCceEEeccCC---CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEeeCCCcc
Q 018004 229 -SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDV 299 (362)
Q Consensus 229 -s~~~~l~~~~~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 299 (362)
+++++|++||+| +++||+||.+. ...|+|+|||+|+ +++.|+|+. +..+|.|.+++|+|+++.+..+
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~~--- 196 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFCS--- 196 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEecC---
Confidence 478999999999 69999999874 2479999999996 468999996 5689999999999999876422
Q ss_pred cccCCCccEEEcccccccccChHHHHHHHHHHHHh
Q 018004 300 FGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQ 334 (362)
Q Consensus 300 ~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~ 334 (362)
....+||||||+++++|++++++|.+++++.
T Consensus 197 ----~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~ 227 (316)
T cd05486 197 ----DGCQAIVDTGTSLITGPSGDIKQLQNYIGAT 227 (316)
T ss_pred ----CCCEEEECCCcchhhcCHHHHHHHHHHhCCc
Confidence 2456999999999999999999999888654
No 9
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.4e-39 Score=306.98 Aligned_cols=212 Identities=27% Similarity=0.401 Sum_probs=177.7
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC---CCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCC
Q 018004 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK---ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (362)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~---~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~ 146 (362)
++.+..|+++|+||||+|++.|+|||||+++||+|..|. .|.. ++.|||++|+|++.
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~-------~~~y~~~~SsT~~~------------- 64 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF-------HSKYKSSKSSTYKK------------- 64 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc-------cCcCCcccCCCccc-------------
Confidence 667899999999999999999999999999999999885 4654 37899999999987
Q ss_pred CCCCCCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCC
Q 018004 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (362)
Q Consensus 147 ~~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~ 226 (362)
....+.+.|++|+. .|.+++|+|.|++.. ++++.||+++...+... ....++||||||++
T Consensus 65 ---------~~~~~~i~Yg~G~~-~G~~~~D~v~ig~~~--------v~~~~f~~~~~~~~~~~--~~~~~dGilGLg~~ 124 (317)
T cd06098 65 ---------NGTSASIQYGTGSI-SGFFSQDSVTVGDLV--------VKNQVFIEATKEPGLTF--LLAKFDGILGLGFQ 124 (317)
T ss_pred ---------CCCEEEEEcCCceE-EEEEEeeEEEECCEE--------ECCEEEEEEEecCCccc--cccccceecccccc
Confidence 34678999999985 999999999998754 45899999987644211 23468999999986
Q ss_pred CC------cHHHHhhhcCCC-CCceEEeccCC---CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEE
Q 018004 227 NS------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (362)
Q Consensus 227 ~~------s~~~~l~~~~~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~ 292 (362)
.. +++.+|++||+| +++||+||.+. ...|+|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.
T Consensus 125 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~ 203 (317)
T cd06098 125 EISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGKS 203 (317)
T ss_pred chhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCEE
Confidence 53 478899999999 68999999864 2479999999996 468999996 568999999999999987
Q ss_pred eeCCCcccccCCCccEEEcccccccccChHHHHHHH
Q 018004 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLV 328 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~ 328 (362)
+.... +...+||||||+++++|++++++|.
T Consensus 204 ~~~~~------~~~~aivDTGTs~~~lP~~~~~~i~ 233 (317)
T cd06098 204 TGFCA------GGCAAIADSGTSLLAGPTTIVTQIN 233 (317)
T ss_pred eeecC------CCcEEEEecCCcceeCCHHHHHhhh
Confidence 65432 2456999999999999999988775
No 10
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2e-39 Score=300.58 Aligned_cols=212 Identities=27% Similarity=0.407 Sum_probs=178.7
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCCCC
Q 018004 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (362)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~~ 155 (362)
|+++|+||||+|++.|+|||||+++||++..|..|..+. +..||+++|+|++.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~-----~~~y~~~~Sst~~~~--------------------- 54 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG-----HKLYDPSKSSTAKLL--------------------- 54 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc-----CCcCCCccCccceec---------------------
Confidence 799999999999999999999999999999998886432 367999999999863
Q ss_pred CCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCC-------
Q 018004 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------- 228 (362)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~------- 228 (362)
..+.+.+.|++|+.+.|.+++|+|.|++.. ++++.||+++..++.+. .....+||||||++..
T Consensus 55 ~~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 55 PGATWSISYGDGSSASGIVYTDTVSIGGVE--------VPNQAIELATAVSASFF--SDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred CCcEEEEEeCCCCeEEEEEEEEEEEECCEE--------ECCeEEEEEeecCcccc--ccccccceeeeccccccccccCC
Confidence 247899999999877999999999998754 45899999998765322 2356899999998643
Q ss_pred --cHHHHhhhcCCCCCceEEeccCCCCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEeeCCCccccc
Q 018004 229 --SMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGV 302 (362)
Q Consensus 229 --s~~~~l~~~~~i~~~Fs~~l~~~~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 302 (362)
+++++|.+++. +++||+||.+ ...|+|+|||+|+ +++.|+|+..+..+|.|.+++|+|+++....
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~------- 195 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWS------- 195 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC-CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceee-------
Confidence 47889998865 8899999987 5689999999995 5799999986578999999999999874321
Q ss_pred CCCccEEEcccccccccChHHHHHHHHHHH
Q 018004 303 GDNKGTIIDSGTTLAYLPEMVYEPLVSKII 332 (362)
Q Consensus 303 ~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~ 332 (362)
.....++|||||+++++|++++++|.+++.
T Consensus 196 ~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~ 225 (278)
T cd06097 196 RSGFSAIADTGTTLILLPDAIVEAYYSQVP 225 (278)
T ss_pred cCCceEEeecCCchhcCCHHHHHHHHHhCc
Confidence 234669999999999999999999998883
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=4e-39 Score=304.32 Aligned_cols=217 Identities=26% Similarity=0.432 Sum_probs=183.3
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCC--CCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCC
Q 018004 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (362)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~--C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~ 147 (362)
++.+..|+++|+||||+|++.|+|||||+++||+|..|.. |.. ++.|+|++|+|++.
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~-------~~~y~~~~Sst~~~-------------- 63 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFL-------HSKYDSSASSTYKA-------------- 63 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCC-------cceECCCCCcceee--------------
Confidence 5567899999999999999999999999999999999873 543 37899999999886
Q ss_pred CCCCCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCC
Q 018004 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (362)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~ 227 (362)
+.|.+.+.|++|+. .|.+++|+|+|++.. ++++.|||+....+... .....+||||||++.
T Consensus 64 --------~~~~~~~~y~~g~~-~G~~~~D~v~ig~~~--------~~~~~f~~a~~~~g~~~--~~~~~dGilGLg~~~ 124 (320)
T cd05488 64 --------NGTEFKIQYGSGSL-EGFVSQDTLSIGDLT--------IKKQDFAEATSEPGLAF--AFGKFDGILGLAYDT 124 (320)
T ss_pred --------CCCEEEEEECCceE-EEEEEEeEEEECCEE--------ECCEEEEEEecCCCcce--eeeeeceEEecCCcc
Confidence 45799999999984 999999999998754 44899999987655321 234579999999976
Q ss_pred C------cHHHHhhhcCCC-CCceEEeccCC-CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEeeC
Q 018004 228 S------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (362)
Q Consensus 228 ~------s~~~~l~~~~~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 295 (362)
. +.+.+|++||+| +++||+||.+. ...|.|+|||+|+ +++.|+|++ ...+|.|.+++|+|+++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEecc
Confidence 4 356789999999 79999999985 4579999999985 569999997 468999999999999987653
Q ss_pred CCcccccCCCccEEEcccccccccChHHHHHHHHHHHHhC
Q 018004 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQ 335 (362)
Q Consensus 296 ~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~ 335 (362)
. +..++|||||+++++|++++++|.+++++..
T Consensus 204 ~--------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 204 E--------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred C--------CCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 2 3459999999999999999999999886543
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.9e-39 Score=304.43 Aligned_cols=220 Identities=25% Similarity=0.408 Sum_probs=183.0
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCC
Q 018004 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (362)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~ 149 (362)
++.+..|+++|+||||+|+++|+|||||+++||++..|..|. ..|..++.|||++|+|++.
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~c~~~~~y~~~~SsT~~~---------------- 63 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLY---TACVTHNLYDASDSSTYKE---------------- 63 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcc---hhhcccCcCCCCCCeeeeE----------------
Confidence 567889999999999999999999999999999998887542 2244558999999999987
Q ss_pred CCCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccC-CCCCCCCcCcceeeecCCCCC
Q 018004 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGKSNS 228 (362)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GilGLg~~~~ 228 (362)
..|.|.+.|++|+ +.|.+++|+|.+++.. + ++.||++..... .+ .....+||||||++..
T Consensus 64 ------~~~~~~~~Yg~g~-~~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~~~~---~~~~~dGilGLg~~~~ 124 (326)
T cd05487 64 ------NGTEFTIHYASGT-VKGFLSQDIVTVGGIP--------V-TQMFGEVTALPAIPF---MLAKFDGVLGMGYPKQ 124 (326)
T ss_pred ------CCEEEEEEeCCce-EEEEEeeeEEEECCEE--------e-eEEEEEEEeccCCcc---ceeecceEEecCChhh
Confidence 3579999999998 5999999999998753 2 477999887532 22 1245899999998643
Q ss_pred ------cHHHHhhhcCCC-CCceEEeccCC---CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEee
Q 018004 229 ------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLN 294 (362)
Q Consensus 229 ------s~~~~l~~~~~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~ 294 (362)
+++++|++||+| +++||+||.+. ...|+|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.+.
T Consensus 125 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 125 AIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEEEe
Confidence 578999999999 69999999874 3479999999996 458899986 56899999999999998764
Q ss_pred CCCcccccCCCccEEEcccccccccChHHHHHHHHHHHHhC
Q 018004 295 LPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQ 335 (362)
Q Consensus 295 ~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~ 335 (362)
.. .+..++|||||+++++|++++++|+++++++.
T Consensus 204 ~~-------~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~ 237 (326)
T cd05487 204 CE-------DGCTAVVDTGASFISGPTSSISKLMEALGAKE 237 (326)
T ss_pred cC-------CCCEEEECCCccchhCcHHHHHHHHHHhCCcc
Confidence 22 24569999999999999999999999987653
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.6e-39 Score=304.87 Aligned_cols=220 Identities=27% Similarity=0.363 Sum_probs=183.9
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCC
Q 018004 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (362)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~ 149 (362)
++.+..|+++|+||||+|++.|+|||||+++||+|..|..|. ..|..++.|||++|+|++.
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~c~~~~~y~~~~Sst~~~---------------- 66 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTN---IACLLHNKYDSTKSSTYKK---------------- 66 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCC---ccccCCCeECCcCCCCeEE----------------
Confidence 678899999999999999999999999999999998887432 1233457899999999987
Q ss_pred CCCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCCc
Q 018004 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSS 229 (362)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s 229 (362)
..|.|.+.|++|+ +.|.+++|+|+|++.. ++++.||++..+.+... .....+||||||++..+
T Consensus 67 ------~~~~~~i~Y~~g~-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~s 129 (329)
T cd05485 67 ------NGTEFAIQYGSGS-LSGFLSTDTVSVGGVS--------VKGQTFAEAINEPGLTF--VAAKFDGILGMGYSSIS 129 (329)
T ss_pred ------CCeEEEEEECCce-EEEEEecCcEEECCEE--------ECCEEEEEEEecCCccc--cccccceEEEcCCcccc
Confidence 3579999999998 5999999999998754 44899999987654211 23468999999997643
Q ss_pred ------HHHHhhhcCCC-CCceEEeccCC---CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEeeC
Q 018004 230 ------MISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (362)
Q Consensus 230 ------~~~~l~~~~~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 295 (362)
++.+|++||+| +++||+||.+. ...|+|+|||+|+ +++.|+|+. ...+|.|.+++++++++.+.
T Consensus 130 ~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~~~~~- 207 (329)
T cd05485 130 VDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGEGEFC- 207 (329)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECCeeec-
Confidence 68999999999 69999999875 2469999999985 468999996 57899999999999988653
Q ss_pred CCcccccCCCccEEEcccccccccChHHHHHHHHHHHHh
Q 018004 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQ 334 (362)
Q Consensus 296 ~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~ 334 (362)
+.+..+||||||+++++|++++++|.+++.+.
T Consensus 208 -------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 208 -------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred -------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 22456999999999999999999999988654
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.1e-38 Score=309.05 Aligned_cols=216 Identities=21% Similarity=0.320 Sum_probs=176.1
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCC
Q 018004 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (362)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~ 149 (362)
++.+.+|+++|+||||+|+++|+|||||+++||+|..|..|. |..++.|||++|+|++.
T Consensus 134 n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~-----C~~~~~yd~s~SsT~~~---------------- 192 (453)
T PTZ00147 134 DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEG-----CETKNLYDSSKSKTYEK---------------- 192 (453)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCccc-----ccCCCccCCccCcceEE----------------
Confidence 567889999999999999999999999999999999987432 33347999999999987
Q ss_pred CCCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCC-
Q 018004 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (362)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~- 228 (362)
..+.+.+.|++|+ +.|.+++|+|+|++.. ++ ..|+++.+..+.........+|||||||++..
T Consensus 193 ------~~~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~--------v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S 256 (453)
T PTZ00147 193 ------DGTKVEMNYVSGT-VSGFFSKDLVTIGNLS--------VP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLS 256 (453)
T ss_pred ------CCCEEEEEeCCCC-EEEEEEEEEEEECCEE--------EE-EEEEEEEeccCcccccccccccceecccCCccc
Confidence 3578999999997 5999999999998753 33 46888876544200002346899999999764
Q ss_pred -----cHHHHhhhcCCC-CCceEEeccCC-CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEeeCCC
Q 018004 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (362)
Q Consensus 229 -----s~~~~l~~~~~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (362)
+++.+|++||+| +++||+||.+. ...|.|+|||+|+ +++.|+|+. +..+|.|.++ +.+++...
T Consensus 257 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~-~~vg~~~~---- 330 (453)
T PTZ00147 257 IGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD-VHFGNVSS---- 330 (453)
T ss_pred cccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE-EEECCEec----
Confidence 478899999999 68999999875 4579999999995 568999996 5689999998 57765421
Q ss_pred cccccCCCccEEEcccccccccChHHHHHHHHHHHHh
Q 018004 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQ 334 (362)
Q Consensus 298 ~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~ 334 (362)
....+||||||+++++|++++++|.+++++.
T Consensus 331 ------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~ 361 (453)
T PTZ00147 331 ------EKANVIVDSGTSVITVPTEFLNKFVESLDVF 361 (453)
T ss_pred ------CceeEEECCCCchhcCCHHHHHHHHHHhCCe
Confidence 2456999999999999999999999988653
No 15
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3.2e-38 Score=295.46 Aligned_cols=213 Identities=33% Similarity=0.580 Sum_probs=173.7
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 018004 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (362)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~ 154 (362)
+|+++|.||||||++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999986543
Q ss_pred CCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCCcHHHHh
Q 018004 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (362)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l 234 (362)
|.|.+.|++|+.++|.+++|+|+|++.. .++++.|||+...++.+. ..+||||||+...+++.|+
T Consensus 34 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~~-----~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ---CLYQVSYGDGSYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLFG-----GAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ---CeeeeEeCCCceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCccC-----CCCEEEECCCCcchHHHHh
Confidence 3778999999987999999999998751 245899999988766542 5899999999999999998
Q ss_pred hhcCCCCCceEEeccCC--CCcceEEeCCCCC--CCceEecCcCCC---CceEEEEeEEEEcCEEeeCCCcccccCCCcc
Q 018004 235 ASSGGVRKMFAHCLDGI--NGGGIFAIGHVVQ--PEVNKTPLVPNQ---PHYSINMTAVQVGLDFLNLPTDVFGVGDNKG 307 (362)
Q Consensus 235 ~~~~~i~~~Fs~~l~~~--~~~G~l~fGg~d~--~~~~~~p~~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 307 (362)
..+ .+++||+||.+. ...|+|+|||+|+ +++.|+|++.++ .+|.|++++|+|+++.+..+... .....
T Consensus 99 ~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~~~~ 173 (299)
T cd05472 99 ASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FGAGG 173 (299)
T ss_pred hHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cCCCC
Confidence 765 468999999874 4579999999997 689999998653 68999999999999987654321 23467
Q ss_pred EEEcccccccccChHHHHHHHHHHHHhCCCCccc-ccCCcCceeeccC
Q 018004 308 TIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVH-TVHDEYTCFQYSE 354 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~~~~i~~~~~~~~~~~~~~-~~~~~~~C~~~~~ 354 (362)
++|||||+++++|++++++|.+++.++....... ....+..||+.+.
T Consensus 174 ~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~ 221 (299)
T cd05472 174 VIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSG 221 (299)
T ss_pred eEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCC
Confidence 9999999999999999999999999886533211 1112236997653
No 16
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=7.2e-38 Score=304.76 Aligned_cols=214 Identities=21% Similarity=0.365 Sum_probs=174.0
Q ss_pred CCCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCC
Q 018004 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (362)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~--~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~ 147 (362)
++.+.+|+++|.||||+|++.|+|||||+++||+|..|. .|.. ++.|||++|+|++.
T Consensus 133 d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~-------~~~yd~s~SsT~~~-------------- 191 (450)
T PTZ00013 133 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSI-------KNLYDSSKSKSYEK-------------- 191 (450)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccccc-------CCCccCccCccccc--------------
Confidence 566789999999999999999999999999999999986 3543 37899999999987
Q ss_pred CCCCCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCC
Q 018004 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (362)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~ 227 (362)
..+.+.+.|++|+ +.|.+++|+|+|++... + ..|+++.+..+.........++||||||++.
T Consensus 192 --------~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~~--------~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~ 253 (450)
T PTZ00013 192 --------DGTKVDITYGSGT-VKGFFSKDLVTLGHLSM--------P-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKD 253 (450)
T ss_pred --------CCcEEEEEECCce-EEEEEEEEEEEECCEEE--------c-cEEEEEEeccccccceecccccceecccCCc
Confidence 3578999999998 59999999999998542 2 5688877653210000234689999999875
Q ss_pred C------cHHHHhhhcCCC-CCceEEeccCC-CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEeeC
Q 018004 228 S------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (362)
Q Consensus 228 ~------s~~~~l~~~~~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 295 (362)
. +++.+|++||+| +++||+||++. ...|.|+|||+|+ +++.|+|+. ...+|.|.++ +.++....
T Consensus 254 ~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v~~G~~~~-- 329 (450)
T PTZ00013 254 LSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQTM-- 329 (450)
T ss_pred cccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-EEECceec--
Confidence 4 588999999999 68999999865 4579999999996 568999996 5689999998 66654332
Q ss_pred CCcccccCCCccEEEcccccccccChHHHHHHHHHHHHh
Q 018004 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQ 334 (362)
Q Consensus 296 ~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~ 334 (362)
....++|||||+++++|++++++|.+.+++.
T Consensus 330 --------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~ 360 (450)
T PTZ00013 330 --------QKANVIVDSGTTTITAPSEFLNKFFANLNVI 360 (450)
T ss_pred --------cccceEECCCCccccCCHHHHHHHHHHhCCe
Confidence 1356999999999999999999999988653
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.4e-37 Score=297.16 Aligned_cols=218 Identities=25% Similarity=0.304 Sum_probs=174.0
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 018004 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (362)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~ 154 (362)
.|+++|.||||+|+|.|+|||||+++||+|..|..| ++.|||++|+|++..
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~---------~~~f~~~~SsT~~~~-------------------- 53 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI---------HTYFHRELSSTYRDL-------------------- 53 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc---------cccCCchhCcCcccC--------------------
Confidence 699999999999999999999999999999877332 268999999999973
Q ss_pred CCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCC------
Q 018004 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------ 228 (362)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~------ 228 (362)
.|.|.+.|++|+. .|.+++|+|+|++.. ++ ...+.|+++....+.+. .....+||||||++.+
T Consensus 54 --~~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~--~~----~~~~~~~~~~~~~~~~~--~~~~~dGIlGLg~~~l~~~~~~ 122 (364)
T cd05473 54 --GKGVTVPYTQGSW-EGELGTDLVSIPKGP--NV----TFRANIAAITESENFFL--NGSNWEGILGLAYAELARPDSS 122 (364)
T ss_pred --CceEEEEECcceE-EEEEEEEEEEECCCC--cc----ceEEeeEEEecccccee--cccccceeeeecccccccCCCC
Confidence 4789999999985 999999999998631 11 11234556554443332 1235799999998643
Q ss_pred --cHHHHhhhcCCCCCceEEeccCC----------CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEE
Q 018004 229 --SMISQLASSGGVRKMFAHCLDGI----------NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (362)
Q Consensus 229 --s~~~~l~~~~~i~~~Fs~~l~~~----------~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~ 292 (362)
+++++|++|+.++++||++|... ...|+|+|||+|+ +++.|+|++ ...+|.|.+++|+|+++.
T Consensus 123 ~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~~ 201 (364)
T cd05473 123 VEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQS 201 (364)
T ss_pred CCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCEe
Confidence 58899999999878999988421 2369999999995 468999997 467999999999999998
Q ss_pred eeCCCcccccCCCccEEEcccccccccChHHHHHHHHHHHHhCC
Q 018004 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQP 336 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~~ 336 (362)
+..+...+ ....+||||||+++++|++++++|.+++.++..
T Consensus 202 ~~~~~~~~---~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~ 242 (364)
T cd05473 202 LNLDCKEY---NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASL 242 (364)
T ss_pred cccccccc---cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcc
Confidence 86543322 124699999999999999999999999998754
No 18
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=6.7e-37 Score=283.57 Aligned_cols=219 Identities=33% Similarity=0.599 Sum_probs=183.8
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCCCC
Q 018004 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (362)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~~ 155 (362)
|+++|.||||+|++.|+|||||+++||+|..|..|..+.. ....|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~---~~~~~~~~~s~~~~~---------------------- 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKH---PRFKYDSSKSSTYKD---------------------- 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccC---CCCccCccCCceeec----------------------
Confidence 7899999999999999999999999999999988765432 001267777776654
Q ss_pred CCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCC------Cc
Q 018004 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN------SS 229 (362)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~------~s 229 (362)
..|.+.+.|++|+. .|.+++|+|.|++.. ++++.|||+......+ .....+||||||+.. .+
T Consensus 56 ~~~~~~~~Y~~g~~-~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~---~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 56 TGCTFSITYGDGSV-TGGLGTDTVTIGGLT--------IPNQTFGCATSESGDF---SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred CCCEEEEEECCCeE-EEEEEEeEEEECCEE--------EeceEEEEEeccCCcc---cccccceEeecCCcccccccCCC
Confidence 56899999999875 999999999999864 4589999999876533 345789999999988 78
Q ss_pred HHHHhhhcCCC-CCceEEeccCC---CCcceEEeCCCCC----CCceEecCcCC-CCceEEEEeEEEEcCEEeeCCCccc
Q 018004 230 MISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPN-QPHYSINMTAVQVGLDFLNLPTDVF 300 (362)
Q Consensus 230 ~~~~l~~~~~i-~~~Fs~~l~~~---~~~G~l~fGg~d~----~~~~~~p~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~ 300 (362)
+++||.++++| +++||+||.+. ...|.|+|||+|+ +++.|+|++.. ..+|.|.+++|+|++.....
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~----- 198 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVIS----- 198 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeee-----
Confidence 99999999999 79999999984 4789999999996 57999999865 78999999999999874111
Q ss_pred ccCCCccEEEcccccccccChHHHHHHHHHHHHhCCC
Q 018004 301 GVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPD 337 (362)
Q Consensus 301 ~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~~~ 337 (362)
......++|||||++++||++++++|++++.+++..
T Consensus 199 -~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~ 234 (283)
T cd05471 199 -SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS 234 (283)
T ss_pred -cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc
Confidence 123567999999999999999999999999988765
No 19
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.1e-36 Score=291.06 Aligned_cols=250 Identities=22% Similarity=0.300 Sum_probs=193.6
Q ss_pred eCCCCce-EEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCC---------CCC
Q 018004 82 IGTPPKD-YYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGP---------LTD 151 (362)
Q Consensus 82 vGtP~q~-~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~---------~~~ 151 (362)
.|||-.+ +.|+|||||+++||+|.+ .+|+|+..++|+++.|....+.. ...
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5788777 999999999999998753 45789999999999998765432 235
Q ss_pred CCCCCCCcceee-eCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCCcH
Q 018004 152 CTANTSCPYLEI-YGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSM 230 (362)
Q Consensus 152 c~~~~~~~~~~~-Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~ 230 (362)
|.. +.|.+... |++|+...|.+++|+|+|+...........++++.|||+....... ....+|||||||++++|+
T Consensus 63 c~~-~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~---~~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 63 CGN-NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKG---LPPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CCC-CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccC---CccccccccccCCCccch
Confidence 643 45888665 7789878999999999998643322111246799999998753211 123489999999999999
Q ss_pred HHHhhhcCCCCCceEEeccCC-CCcceEEeCCCCC----------CCceEecCcCC---CCceEEEEeEEEEcCEEeeCC
Q 018004 231 ISQLASSGGVRKMFAHCLDGI-NGGGIFAIGHVVQ----------PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLP 296 (362)
Q Consensus 231 ~~~l~~~~~i~~~Fs~~l~~~-~~~G~l~fGg~d~----------~~~~~~p~~~~---~~~w~v~l~~i~v~~~~~~~~ 296 (362)
+.||..++.++++||+||.+. ...|.|+||+.+. +.+.|+||+.+ ..+|.|+|++|+|+++.+.++
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~ 218 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLN 218 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCC
Confidence 999998777778999999875 4579999999874 56899999865 369999999999999998776
Q ss_pred Ccccc--cCCCccEEEcccccccccChHHHHHHHHHHHHhCCCCccccc--CCcCceeeccC
Q 018004 297 TDVFG--VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTV--HDEYTCFQYSE 354 (362)
Q Consensus 297 ~~~~~--~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~~~~~~~~~--~~~~~C~~~~~ 354 (362)
...+. ..+..++||||||++++||+++|++|.+++.+++........ ..++.||+.+.
T Consensus 219 ~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~ 280 (362)
T cd05489 219 PTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASA 280 (362)
T ss_pred chhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCC
Confidence 55433 234567999999999999999999999999988764332221 11369998653
No 20
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.5e-36 Score=278.01 Aligned_cols=191 Identities=36% Similarity=0.726 Sum_probs=157.4
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeEeCC-CCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCC
Q 018004 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI-QCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDC 152 (362)
Q Consensus 74 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c 152 (362)
++|+++|.||||+|++.|+|||||+++||+|. .|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 47999999999999999999999999999873 45444
Q ss_pred CCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCCcHHH
Q 018004 153 TANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMIS 232 (362)
Q Consensus 153 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 232 (362)
.|.|.+.|++|+.+.|.+++|+|+|+..... ..++++.|||+....+.+.. .....+||||||+...++++
T Consensus 39 ----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLN-PPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCCCceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccC-CCccCCEEEECCCCCCCHHH
Confidence 1688999998877899999999999754322 13568999999876554321 23568999999999999999
Q ss_pred HhhhcCCCCCceEEeccCCCCcceEEeCCCC--CCCceEecCcCC--CCceEEEEeEEEEcCEEeeCCCcccccCCCccE
Q 018004 233 QLASSGGVRKMFAHCLDGINGGGIFAIGHVV--QPEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGT 308 (362)
Q Consensus 233 ~l~~~~~i~~~Fs~~l~~~~~~G~l~fGg~d--~~~~~~~p~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~a 308 (362)
||.++++|+++||+||.+ ..+|.|+||+.. .+.+.|+|+..+ ..+|.|++.+|+|+++... .....+
T Consensus 110 ql~~~~~i~~~Fs~~l~~-~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--------~~~~~~ 180 (273)
T cd05475 110 QLASQGIIKNVIGHCLSS-NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--------GKGLEV 180 (273)
T ss_pred HHHhcCCcCceEEEEccC-CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------CCCceE
Confidence 999999998999999987 457999999643 256999999765 4799999999999998532 234569
Q ss_pred EEcccccccccChHHH
Q 018004 309 IIDSGTTLAYLPEMVY 324 (362)
Q Consensus 309 iiDSGtt~~~lp~~~~ 324 (362)
||||||+++++|+++|
T Consensus 181 ivDTGTt~t~lp~~~y 196 (273)
T cd05475 181 VFDSGSSYTYFNAQAY 196 (273)
T ss_pred EEECCCceEEcCCccc
Confidence 9999999999999987
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.8e-35 Score=268.77 Aligned_cols=184 Identities=40% Similarity=0.743 Sum_probs=157.1
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 018004 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (362)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~ 154 (362)
+|+++|+||||+|++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 599999999999999999999999999975
Q ss_pred CCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCCcHHHHh
Q 018004 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (362)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l 234 (362)
|.|.+.|++|+.+.|.+++|+|.|++.. ..++++.|||+....+ + ....++||||||+...|++.||
T Consensus 31 ---~~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~---~~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 31 ---CSYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G---SFGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ---CceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C---ccCCCCEEEECCCCcccHHHHh
Confidence 1567999988888999999999999862 1245899999998766 3 3457899999999999999999
Q ss_pred hhcCCCCCceEEeccCC---CCcceEEeCCCCC---CCceEecCcCC---CCceEEEEeEEEEcCEEeeCCCcccc--cC
Q 018004 235 ASSGGVRKMFAHCLDGI---NGGGIFAIGHVVQ---PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLPTDVFG--VG 303 (362)
Q Consensus 235 ~~~~~i~~~Fs~~l~~~---~~~G~l~fGg~d~---~~~~~~p~~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~--~~ 303 (362)
..++ ++||+||.+. ...|+|+||++|+ +++.|+|++.+ ..+|.+++++|+|+++.+.++...+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9887 7999999873 4579999999997 78999999865 57999999999999998865433221 23
Q ss_pred CCccEEEcccccccccChHHH
Q 018004 304 DNKGTIIDSGTTLAYLPEMVY 324 (362)
Q Consensus 304 ~~~~aiiDSGtt~~~lp~~~~ 324 (362)
....+||||||+++++|++++
T Consensus 175 ~~~~ai~DTGTs~~~lp~~~~ 195 (265)
T cd05476 175 GSGGTIIDSGTTLTYLPDPAY 195 (265)
T ss_pred CCCcEEEeCCCcceEcCcccc
Confidence 457799999999999999998
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=8.5e-35 Score=274.04 Aligned_cols=218 Identities=28% Similarity=0.503 Sum_probs=179.6
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 018004 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (362)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~ 154 (362)
+|+++|.||||+|++.|++||||+++||++..|..| ..|.....|++.+|+|++..
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~----~~~~~~~~y~~~~S~t~~~~-------------------- 56 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC----SSCASSGFYNPSKSSTFSNQ-------------------- 56 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH----THHCTSC-BBGGGSTTEEEE--------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc----cccccccccccccccccccc--------------------
Confidence 599999999999999999999999999999999876 11223379999999999874
Q ss_pred CCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCC-------C
Q 018004 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS-------N 227 (362)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~-------~ 227 (362)
.+.+.+.|++|+ ++|.+++|+|.|++.. +.++.||++....+... .....+||||||++ .
T Consensus 57 --~~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 57 --GKPFSISYGDGS-VSGNLVSDTVSIGGLT--------IPNQTFGLADSYSGDPF--SPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp --EEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEEESHHH--HHSSSSEEEE-SSGGGSGGGTS
T ss_pred --eeeeeeeccCcc-cccccccceEeeeecc--------ccccceecccccccccc--ccccccccccccCCcccccccC
Confidence 367999999999 7999999999999864 44799999998544211 23468999999974 2
Q ss_pred CcHHHHhhhcCCC-CCceEEeccCC-CCcceEEeCCCCC----CCceEecCcCCCCceEEEEeEEEEcCEEeeCCCcccc
Q 018004 228 SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFG 301 (362)
Q Consensus 228 ~s~~~~l~~~~~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 301 (362)
.+++++|+++|+| +++||++|.+. ...|.|+|||+|+ +++.|+|+. ...+|.+.+.+|.+++.....
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~~------ 196 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVFS------ 196 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEEE------
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-ccccccccccccccccccccc------
Confidence 4799999999999 69999999986 3579999999986 458899997 778999999999999883221
Q ss_pred cCCCccEEEcccccccccChHHHHHHHHHHHHhCCC
Q 018004 302 VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPD 337 (362)
Q Consensus 302 ~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~~~ 337 (362)
.....++||||++++++|.+++++|++.+++....
T Consensus 197 -~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~ 231 (317)
T PF00026_consen 197 -SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD 231 (317)
T ss_dssp -EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC
T ss_pred -ccceeeecccccccccccchhhHHHHhhhcccccc
Confidence 12245999999999999999999999999887553
No 23
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.5e-33 Score=261.73 Aligned_cols=186 Identities=26% Similarity=0.467 Sum_probs=159.4
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 018004 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (362)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~ 154 (362)
.|+++|.||||+|++.|+|||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 69999999999999999999999999996
Q ss_pred CCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCC------
Q 018004 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------ 228 (362)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~------ 228 (362)
.|++.|++|+.+.|.+++|+|+|++.. +.++.|||+.... ..+||||||+...
T Consensus 31 ----~~~~~Y~~g~~~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~~---------~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 ----DFSISYGDGTSASGTWGTDTVSIGGAT--------VKNLQFAVANSTS---------SDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred ----eeEEEeccCCcEEEEEEEEEEEECCeE--------ecceEEEEEecCC---------CCcceeeECCCCCcccccC
Confidence 246889997777999999999998754 4489999998732 3689999999775
Q ss_pred -----cHHHHhhhcCCC-CCceEEeccCC-CCcceEEeCCCCC----CCceEecCcCCC-----CceEEEEeEEEEcCEE
Q 018004 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQ-----PHYSINMTAVQVGLDF 292 (362)
Q Consensus 229 -----s~~~~l~~~~~i-~~~Fs~~l~~~-~~~G~l~fGg~d~----~~~~~~p~~~~~-----~~w~v~l~~i~v~~~~ 292 (362)
+|++||++||+| +++||+||.+. ...|.|+|||+|+ +++.|+|+..+. .+|.|.+++|+++++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 699999999999 69999999985 4579999999996 458999998653 6899999999999887
Q ss_pred eeCCCcccccCCCccEEEcccccccccChHHHHHHHHHHHHhCC
Q 018004 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQP 336 (362)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~~ 336 (362)
+..+. ......++|||||++++||.+++++|.+++.+++.
T Consensus 170 ~~~~~----~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~ 209 (295)
T cd05474 170 GNTTL----LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD 209 (295)
T ss_pred Ccccc----cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc
Confidence 64321 13456799999999999999999999999988764
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=1.6e-30 Score=221.64 Aligned_cols=162 Identities=38% Similarity=0.726 Sum_probs=131.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCCCC
Q 018004 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (362)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~~ 155 (362)
|+++|.||||+|++.|+|||||+++|++|.. +.|+|++|+|++.++|.+++|...++.....|..+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~--------------~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~ 66 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPD--------------PPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSN 66 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCES
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCC--------------cccCCccCCcccccCCCCcchhhcccccccCCCCc
Confidence 8999999999999999999999999999811 79999999999999999999998775533344556
Q ss_pred CCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCCCCCcHHHHhh
Q 018004 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLA 235 (362)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~l~ 235 (362)
..|.|.+.|.+++.+.|.+++|+|.++...... ..+.++.|||+....+.+. ..+||||||+.+.||+.||.
T Consensus 67 ~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~~-----~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 67 NSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLFY-----GADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSST-----TEEEEEE-SSSTTSHHHHHH
T ss_pred CcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCCc-----CCCcccccCCCcccHHHHHH
Confidence 789999999999999999999999999864332 2456899999999886553 68999999999999999998
Q ss_pred hcCCCCCceEEeccC--CCCcceEEeCC
Q 018004 236 SSGGVRKMFAHCLDG--INGGGIFAIGH 261 (362)
Q Consensus 236 ~~~~i~~~Fs~~l~~--~~~~G~l~fGg 261 (362)
++ ..++||+||.+ ....|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 88 66899999998 26789999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.1e-22 Score=161.58 Aligned_cols=108 Identities=34% Similarity=0.605 Sum_probs=90.2
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcc-cCCCCCccceecCCCcccCCCCCCCCCCCCCCC
Q 018004 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLY-DIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANT 156 (362)
Q Consensus 78 ~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y-~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~~~ 156 (362)
++|.||||+|++.|+|||||+++||+|..|..|..+. ++.| +|..|++++. .
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~-----~~~~~~~~~sst~~~----------------------~ 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS-----HSSYDDPSASSTYSD----------------------N 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc-----ccccCCcCCCCCCCC----------------------C
Confidence 4799999999999999999999999999998776432 2456 9999999886 4
Q ss_pred CCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeec
Q 018004 157 SCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGF 223 (362)
Q Consensus 157 ~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGL 223 (362)
.|.|.+.|++|+. .|.+++|+|.|++.. ++++.|||+....+.+. .....+|||||
T Consensus 54 ~~~~~~~Y~~g~~-~g~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~--~~~~~~GilGL 109 (109)
T cd05470 54 GCTFSITYGTGSL-SGGLSTDTVSIGDIE--------VVGQAFGCATDEPGATF--LPALFDGILGL 109 (109)
T ss_pred CcEEEEEeCCCeE-EEEEEEEEEEECCEE--------ECCEEEEEEEecCCccc--cccccccccCC
Confidence 5799999999975 899999999998754 45899999998877542 23568999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.03 E-value=6.2e-10 Score=94.59 Aligned_cols=77 Identities=36% Similarity=0.569 Sum_probs=59.2
Q ss_pred ceEEEEeEEEEcCEEeeCCCccccc-CCCccEEEcccccccccChHHHHHHHHHHHHhCCCCc----ccccCCcCceeec
Q 018004 278 HYSINMTAVQVGLDFLNLPTDVFGV-GDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLK----VHTVHDEYTCFQY 352 (362)
Q Consensus 278 ~w~v~l~~i~v~~~~~~~~~~~~~~-~~~~~aiiDSGtt~~~lp~~~~~~i~~~~~~~~~~~~----~~~~~~~~~C~~~ 352 (362)
+|.|+|.+|+|+++++.++...|.. ++...++|||||++++||+++|++|++++.++++... .....++++||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999999998887643 3467899999999999999999999999999987654 3456677899999
Q ss_pred cC
Q 018004 353 SE 354 (362)
Q Consensus 353 ~~ 354 (362)
+.
T Consensus 81 ~~ 82 (161)
T PF14541_consen 81 SS 82 (161)
T ss_dssp GC
T ss_pred cc
Confidence 87
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.96 E-value=2.3e-05 Score=59.87 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=62.0
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 018004 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (362)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~~c~~ 154 (362)
.|++++.|+ ++++.++||||++.+|+.......+. . ...
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~----------~-------~~~---------------------- 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG----------L-------PLT---------------------- 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC----------C-------Ccc----------------------
Confidence 589999999 89999999999999999764321111 0 000
Q ss_pred CCCCcceeeeCCCCeEEEEEEEEEEEEecccCCccccccCceeeEEeeeeccCCCCCCCCcCcceeeecCC
Q 018004 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGK 225 (362)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~ 225 (362)
......+...+|.........+.+++++... .++.+........ ..+||||+.+
T Consensus 41 -~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~~--------~~~~~~v~d~~~~--------~~~gIlG~d~ 94 (96)
T cd05483 41 -LGGKVTVQTANGRVRAARVRLDSLQIGGITL--------RNVPAVVLPGDAL--------GVDGLLGMDF 94 (96)
T ss_pred -CCCcEEEEecCCCccceEEEcceEEECCcEE--------eccEEEEeCCccc--------CCceEeChHH
Confidence 1234566777777656666688999987542 2555555543221 3789999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.03 E-value=0.028 Score=45.12 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=27.9
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCeeeEeC
Q 018004 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (362)
Q Consensus 72 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~ 104 (362)
.++.|++++.|. ++++.+++|||++.+-++.
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNE 38 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 478899999998 8899999999999998865
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.56 E-value=0.088 Score=39.16 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.8
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeEeCC
Q 018004 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (362)
Q Consensus 78 ~~i~vGtP~q~~~v~~DTGSs~~Wv~~~ 105 (362)
+++.|+ .+++.+++|||++.+.+...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 467888 89999999999998888653
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.98 E-value=0.41 Score=38.48 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.7
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 018004 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (362)
Q Consensus 72 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~ 106 (362)
....+++++.|+ ++++.+++|||++..++....
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~ 45 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKAC 45 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHH
Confidence 456789999999 999999999999999997644
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.10 E-value=0.12 Score=39.03 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=25.8
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 018004 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (362)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~ 106 (362)
|++++.|+ ++++.+++||||+..++....
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 999999999999999997644
No 32
>PF13650 Asp_protease_2: Aspartyl protease
Probab=90.17 E-value=0.4 Score=35.47 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=24.7
Q ss_pred EEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 018004 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (362)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i 327 (362)
++|+|+.+. ++||||++.+.+++++++++
T Consensus 3 v~vng~~~~-------------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR-------------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE-------------EEEcCCCCcEEECHHHHHHc
Confidence 677887664 89999999999999998776
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=89.96 E-value=0.57 Score=33.70 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=29.8
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCC
Q 018004 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQC 107 (362)
Q Consensus 72 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c 107 (362)
..+.+++++.|| ++.+..++|||++...|+...+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 467899999999 8999999999999998876544
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.91 E-value=0.92 Score=32.60 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.8
Q ss_pred EEEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 018004 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (362)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i 327 (362)
.+.|+++.+. +++|||++-..++.+..+.+
T Consensus 12 ~~~I~g~~~~-------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-------------EEEeCCCcceecCHHHHHHh
Confidence 3667777765 99999999999999998887
No 35
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=87.73 E-value=0.73 Score=36.90 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=28.0
Q ss_pred CceEEEEeEEEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 018004 277 PHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (362)
Q Consensus 277 ~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i 327 (362)
++|.+ .++|||+.+. .+||||++.+.++.++.+++
T Consensus 10 g~~~v---~~~InG~~~~-------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYA---TGRVNGRNVR-------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEE---EEEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 45543 4677888654 89999999999999998776
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=87.19 E-value=0.9 Score=34.13 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=27.2
Q ss_pred EEEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHHHH
Q 018004 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVS 329 (362)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~~ 329 (362)
.+.|+|+.+. .++|||++.+.++.+.+.++-.
T Consensus 4 ~~~Ing~~i~-------------~lvDTGA~~svis~~~~~~lg~ 35 (91)
T cd05484 4 TLLVNGKPLK-------------FQLDTGSAITVISEKTWRKLGS 35 (91)
T ss_pred EEEECCEEEE-------------EEEcCCcceEEeCHHHHHHhCC
Confidence 4678888875 8999999999999999887643
No 37
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=87.01 E-value=4.1 Score=35.53 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=53.4
Q ss_pred CCcccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCCCCccceecCCCcccCCCCCCCCC
Q 018004 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (362)
Q Consensus 71 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~Sst~~~v~c~~~~C~~~~~~~~~ 150 (362)
..+|.|+++..|- +|++..++|||-+..-++..+-.. --||..+
T Consensus 101 ~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-----------lGid~~~----------------------- 144 (215)
T COG3577 101 SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-----------LGIDLNS----------------------- 144 (215)
T ss_pred cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-----------hCCCccc-----------------------
Confidence 4688999999999 999999999999998886543110 1233221
Q ss_pred CCCCCCCCcceeeeCCCCeEEEEEEEEEEEEecccCC
Q 018004 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGD 187 (362)
Q Consensus 151 ~c~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~ 187 (362)
.+.++.+.-..|......+-.|.|.||+...+
T Consensus 145 -----l~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~ 176 (215)
T COG3577 145 -----LDYTITVSTANGRARAAPVTLDRVQIGGIRVK 176 (215)
T ss_pred -----cCCceEEEccCCccccceEEeeeEEEccEEEc
Confidence 12244455567877566789999999986543
No 38
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=85.94 E-value=1.4 Score=32.93 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=25.7
Q ss_pred eEEEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHHH
Q 018004 284 TAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLV 328 (362)
Q Consensus 284 ~~i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~ 328 (362)
-.+.|+++.+. ++||||++.+.++.+..+++.
T Consensus 5 v~v~i~~~~~~-------------~llDTGa~~s~i~~~~~~~l~ 36 (96)
T cd05483 5 VPVTINGQPVR-------------FLLDTGASTTVISEELAERLG 36 (96)
T ss_pred EEEEECCEEEE-------------EEEECCCCcEEcCHHHHHHcC
Confidence 34677777665 899999999999999877653
No 39
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=85.80 E-value=1.2 Score=34.02 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.4
Q ss_pred EEEEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 018004 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (362)
Q Consensus 77 ~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~ 106 (362)
+++|.+. .+++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 6788899 889999999999999887644
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=83.70 E-value=1.3 Score=32.89 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=25.3
Q ss_pred EEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 018004 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (362)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i 327 (362)
+.|||+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------------EEEECCCCeEEECHHHhhhc
Confidence 677888775 89999999999999998875
No 41
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=80.75 E-value=2.2 Score=34.22 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.7
Q ss_pred EEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHHH
Q 018004 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLV 328 (362)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i~ 328 (362)
++|+|+.+. +++|||++.+.++++..+++-
T Consensus 21 ~~Ing~~~~-------------~LvDTGAs~s~Is~~~a~~lg 50 (124)
T cd05479 21 VEINGVPVK-------------AFVDSGAQMTIMSKACAEKCG 50 (124)
T ss_pred EEECCEEEE-------------EEEeCCCceEEeCHHHHHHcC
Confidence 566777664 899999999999999988744
No 42
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=79.05 E-value=2.6 Score=31.31 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=21.9
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 018004 79 KIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (362)
Q Consensus 79 ~i~vGtP~q~~~v~~DTGSs~~Wv~~~~ 106 (362)
.+.|. ++++++++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 46677 899999999999999997644
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=77.23 E-value=2.2 Score=32.49 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=23.6
Q ss_pred eEEEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHH
Q 018004 284 TAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYE 325 (362)
Q Consensus 284 ~~i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~ 325 (362)
..|.++|+.+. ++||||+..+.++.+.+.
T Consensus 8 i~v~i~g~~i~-------------~LlDTGA~vsiI~~~~~~ 36 (100)
T PF00077_consen 8 ITVKINGKKIK-------------ALLDTGADVSIISEKDWK 36 (100)
T ss_dssp EEEEETTEEEE-------------EEEETTBSSEEESSGGSS
T ss_pred EEEeECCEEEE-------------EEEecCCCcceecccccc
Confidence 34777888775 999999999999987653
No 44
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=73.91 E-value=5.1 Score=30.02 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.0
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 018004 79 KIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (362)
Q Consensus 79 ~i~vGtP~q~~~v~~DTGSs~~Wv~~~~ 106 (362)
.+.|+ +|.+.+++|||.+++-+...+
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~ 27 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEND 27 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEcccc
Confidence 46777 999999999999999997643
No 45
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=72.73 E-value=4.3 Score=32.61 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=24.9
Q ss_pred eEEEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 018004 284 TAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (362)
Q Consensus 284 ~~i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i 327 (362)
-.+++||+.+. |++|||+..+.++.+..+++
T Consensus 27 I~~~ing~~vk-------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 27 INCKINGVPVK-------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEEETTEEEE-------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEEECCEEEE-------------EEEeCCCCccccCHHHHHHc
Confidence 34678888876 99999999999999999884
No 46
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=71.43 E-value=4.3 Score=30.74 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEcccccccccChHHHHHHH
Q 018004 308 TIIDSGTTLAYLPEMVYEPLV 328 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~~~~i~ 328 (362)
+.+|||++...+|.+.++++.
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 899999999999999988876
No 47
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=68.14 E-value=9.6 Score=36.32 Aligned_cols=96 Identities=21% Similarity=0.327 Sum_probs=0.0
Q ss_pred EEEEEcCCCeeeEeCCCCCCCCCCCCCCccCCcccCCC-CCccceecCCCcccCCCCCCCCCCCCCCCCCcceeeeCCCC
Q 018004 90 YVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKD-SSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGS 168 (362)
Q Consensus 90 ~v~~DTGSs~~Wv~~~~c~~C~~~~~~~~~~~~y~~~~-Sst~~~v~c~~~~C~~~~~~~~~~c~~~~~~~~~~~Y~~g~ 168 (362)
+|++||||.-| +.+.... ++....++-... .+.+..+| ..|.+|.
T Consensus 43 nvlVDTGS~GL--------------------Ri~~sAl~~~l~~~Lp~~t~-----~g~~laEC---------~~F~sgy 88 (370)
T PF11925_consen 43 NVLVDTGSYGL--------------------RIFASALPSSLAGSLPQQTG-----GGAPLAEC---------AQFASGY 88 (370)
T ss_pred cEEEeccchhh--------------------hHHHhhhchhhhccCCcccC-----CCcchhhh---------hhccCcc
Q ss_pred eEEEEEEEEEEEEecccCCccccccCceeeEEee---------eeccCCCCCCCCcCcceeeecCC
Q 018004 169 STTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCG---------ARQSGNLDSTNEEALDGIIGFGK 225 (362)
Q Consensus 169 ~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~---------~~~~~~~~~~~~~~~~GilGLg~ 225 (362)
. .|-+.+-.|.|++.... .++-|.++-. ..............++||||+|.
T Consensus 89 t-WGsVr~AdV~igge~A~-----~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~ 148 (370)
T PF11925_consen 89 T-WGSVRTADVTIGGETAS-----SIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGP 148 (370)
T ss_pred c-ccceEEEEEEEcCeecc-----ccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecC
No 48
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=66.17 E-value=13 Score=32.43 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.3
Q ss_pred CCceEEEEeEEEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 018004 276 QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (362)
Q Consensus 276 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i 327 (362)
.+||.+ ...|||+.+. .++|||.|.+.++++..+.+
T Consensus 103 ~GHF~a---~~~VNGk~v~-------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEA---NGRVNGKKVD-------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEE---EEEECCEEEE-------------EEEecCcceeecCHHHHHHh
Confidence 456664 4789999886 89999999999999886654
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=54.85 E-value=8.3 Score=30.01 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.3
Q ss_pred cEEEcccccccc-cChHHHHHH
Q 018004 307 GTIIDSGTTLAY-LPEMVYEPL 327 (362)
Q Consensus 307 ~aiiDSGtt~~~-lp~~~~~~i 327 (362)
.+++|||.+... +|.++++++
T Consensus 18 ~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 18 RALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEECCCCeEEecCHHHHHHc
Confidence 489999999886 999998875
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=52.40 E-value=20 Score=30.24 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=21.2
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCeeeEeC
Q 018004 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (362)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~ 104 (362)
.+.+++ ++-..++.++|||||+.-++..
T Consensus 34 T~~v~l--~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 34 TAIVQL--NCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEE--eecCcEEEEEEeCCCccceeeh
Confidence 344444 4448999999999999887765
No 51
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.85 E-value=9.2 Score=30.51 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEccccc-ccccChHHHHHHH
Q 018004 308 TIIDSGTT-LAYLPEMVYEPLV 328 (362)
Q Consensus 308 aiiDSGtt-~~~lp~~~~~~i~ 328 (362)
.++|||-+ ++.+|+++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 58999999 9999999998864
No 52
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=51.42 E-value=32 Score=27.98 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=25.9
Q ss_pred eEEEEeEEEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 018004 279 YSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (362)
Q Consensus 279 w~v~l~~i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i 327 (362)
-.+-..-+.|++..+. ++||||++-.++..+...++
T Consensus 19 ~~vi~g~~~I~~~~~~-------------vLiDSGAThsFIs~~~a~~~ 54 (135)
T PF08284_consen 19 PDVITGTFLINSIPAS-------------VLIDSGATHSFISSSFAKKL 54 (135)
T ss_pred CCeEEEEEEeccEEEE-------------EEEecCCCcEEccHHHHHhc
Confidence 3444455666666553 89999999999998886654
No 53
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=50.29 E-value=13 Score=28.42 Aligned_cols=17 Identities=18% Similarity=0.571 Sum_probs=15.0
Q ss_pred EEEcccccccccChHHH
Q 018004 308 TIIDSGTTLAYLPEMVY 324 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~~ 324 (362)
++||||++.++++.+-.
T Consensus 14 ~~~DTGSs~~Wv~~~~c 30 (109)
T cd05470 14 VLLDTGSSNLWVPSVDC 30 (109)
T ss_pred EEEeCCCCCEEEeCCCC
Confidence 89999999999987643
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=47.37 E-value=33 Score=27.55 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=25.5
Q ss_pred cccEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCC
Q 018004 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECP 111 (362)
Q Consensus 73 ~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~c~~C~ 111 (362)
....|++++|+ +++++..+|||.-.+-++..-+..|.
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 45789999999 99999999999999888764333453
No 55
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=45.28 E-value=28 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=23.9
Q ss_pred EEEcCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 018004 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (362)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~aiiDSGtt~~~lp~~~~~~i 327 (362)
-++||..+. |.+|||+-.+.+...-.++.
T Consensus 3 Ck~nG~~vk-------------AfVDsGaQ~timS~~caerc 31 (103)
T cd05480 3 CQCAGKELR-------------ALVDTGCQYNLISAACLDRL 31 (103)
T ss_pred eeECCEEEE-------------EEEecCCchhhcCHHHHHHc
Confidence 356777775 99999999999999987763
No 56
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=40.09 E-value=50 Score=20.28 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhccccCCcee
Q 018004 9 LCIVLIATAAVGGVSSNHGV 28 (362)
Q Consensus 9 l~~~l~a~~~~~~~~~~~~~ 28 (362)
+.+.+++++++..+.++.+.
T Consensus 8 ~~l~lLal~~a~~~~pG~Vi 27 (36)
T PF08194_consen 8 FALLLLALAAAVPATPGNVI 27 (36)
T ss_pred HHHHHHHHHhcccCCCCeEE
Confidence 33444555544434444443
No 57
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=39.51 E-value=41 Score=26.06 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=20.0
Q ss_pred EEEEeCCCCc----eEEEEEEcCCCeee-Ee
Q 018004 78 AKIGIGTPPK----DYYVQVDTGSDIMW-VN 103 (362)
Q Consensus 78 ~~i~vGtP~q----~~~v~~DTGSs~~W-v~ 103 (362)
+++.+..|.| ++.+++|||.+..- ++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 6788888733 68999999998664 54
No 58
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=39.10 E-value=53 Score=22.50 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=17.7
Q ss_pred EEEcccccccccChHHHHHH
Q 018004 308 TIIDSGTTLAYLPEMVYEPL 327 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~~~~i 327 (362)
+++|||++...+..+.++..
T Consensus 12 ~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 12 ALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEcCCCcccccCHHHHHHc
Confidence 89999999999999887654
No 59
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=37.62 E-value=28 Score=26.22 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=18.5
Q ss_pred EEeCCCC-ceEEEEEEcCCCeeeEeC
Q 018004 80 IGIGTPP-KDYYVQVDTGSDIMWVNC 104 (362)
Q Consensus 80 i~vGtP~-q~~~v~~DTGSs~~Wv~~ 104 (362)
+.+. . +++.+.+|||++..-+|-
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEeccH
Confidence 4555 5 899999999999887764
No 60
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=37.08 E-value=56 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.2
Q ss_pred cEEEcccccccccChHHHHHHHHH
Q 018004 307 GTIIDSGTTLAYLPEMVYEPLVSK 330 (362)
Q Consensus 307 ~aiiDSGtt~~~lp~~~~~~i~~~ 330 (362)
.++||||++...+-.++.+.|-=.
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~L~ 70 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLELP 70 (177)
T ss_pred EEEEeCCCccceeehhhHHhhCCc
Confidence 399999999999999998877543
No 61
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=34.28 E-value=26 Score=32.66 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=6.3
Q ss_pred CCCcc--chHHH
Q 018004 1 MGLCL--RNCLC 10 (362)
Q Consensus 1 ~~m~~--~~~l~ 10 (362)
||||| |+||+
T Consensus 1 MaMmMTGRVLLV 12 (291)
T PTZ00459 1 MAMMMTGRVLLV 12 (291)
T ss_pred CccchhchHHHH
Confidence 77776 55544
No 62
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=32.33 E-value=37 Score=30.96 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=14.5
Q ss_pred EEEcccccccccChHH
Q 018004 308 TIIDSGTTLAYLPEMV 323 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~ 323 (362)
++||||++.+++|..-
T Consensus 16 v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 16 LDLDTGSSDLWVFSSE 31 (278)
T ss_pred EEEeCCCCceeEeeCC
Confidence 8999999999999764
No 63
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=31.41 E-value=68 Score=29.22 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=23.1
Q ss_pred ccEEEE---EEeCC---CCceEEEEEEcCCCeeeEeCC
Q 018004 74 GLYYAK---IGIGT---PPKDYYVQVDTGSDIMWVNCI 105 (362)
Q Consensus 74 ~~Y~~~---i~vGt---P~q~~~v~~DTGSs~~Wv~~~ 105 (362)
..|.++ |+||. +.....++||||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 466654 58873 233467999999999999863
No 64
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=28.08 E-value=64 Score=30.25 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=14.4
Q ss_pred EEEcccccccccChHH
Q 018004 308 TIIDSGTTLAYLPEMV 323 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~ 323 (362)
++||||++.+++|.+.
T Consensus 19 v~~DTGS~~~wv~~~~ 34 (326)
T cd06096 19 LILDTGSSSLSFPCSQ 34 (326)
T ss_pred EEEeCCCCceEEecCC
Confidence 9999999999998754
No 65
>PLN03146 aspartyl protease family protein; Provisional
Probab=26.43 E-value=66 Score=31.69 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=12.9
Q ss_pred EEEcccccccccCh
Q 018004 308 TIIDSGTTLAYLPE 321 (362)
Q Consensus 308 aiiDSGtt~~~lp~ 321 (362)
+++|||+.++|+|-
T Consensus 100 vi~DTGS~l~Wv~C 113 (431)
T PLN03146 100 AIADTGSDLIWTQC 113 (431)
T ss_pred EEECCCCCcceEcC
Confidence 89999999999974
No 66
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=22.56 E-value=96 Score=27.99 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=15.0
Q ss_pred eEEEEEEcCCCeeeEeCC
Q 018004 88 DYYVQVDTGSDIMWVNCI 105 (362)
Q Consensus 88 ~~~v~~DTGSs~~Wv~~~ 105 (362)
...++||||++.+.+|..
T Consensus 176 ~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCcEEEeCCCcceEcCcc
Confidence 356899999999999863
No 67
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=22.19 E-value=96 Score=28.30 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=12.4
Q ss_pred EEEcccccccccC
Q 018004 308 TIIDSGTTLAYLP 320 (362)
Q Consensus 308 aiiDSGtt~~~lp 320 (362)
+++|||++.+++|
T Consensus 18 v~~DTgS~~~wv~ 30 (295)
T cd05474 18 VLLDTGSSDLWVP 30 (295)
T ss_pred EEEeCCCCcceee
Confidence 8999999999999
No 68
>PF15240 Pro-rich: Proline-rich
Probab=21.66 E-value=58 Score=27.86 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhccc
Q 018004 7 NCLCIVLIATAAVGGV 22 (362)
Q Consensus 7 ~~l~~~l~a~~~~~~~ 22 (362)
|||+||.+||++.++|
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 3566666788888766
No 69
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.48 E-value=73 Score=30.94 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=15.4
Q ss_pred EEEcccccccccChHHHH
Q 018004 308 TIIDSGTTLAYLPEMVYE 325 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~~~ 325 (362)
+++|||+.++++|-.-..
T Consensus 62 v~~DTGS~~lWV~c~~c~ 79 (398)
T KOG1339|consen 62 VVLDTGSDLLWVPCAPCS 79 (398)
T ss_pred EEEeCCCCceeecccccc
Confidence 999999999999985443
No 70
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=21.18 E-value=1.4e+02 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=24.9
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCeeeEeCC
Q 018004 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (362)
Q Consensus 74 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~ 105 (362)
..-.+.+.|. .++..+++|+|++.-+|...
T Consensus 20 ~vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 4567788888 78999999999999888653
No 71
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=21.13 E-value=95 Score=28.95 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=14.3
Q ss_pred EEEcccccccccChHH
Q 018004 308 TIIDSGTTLAYLPEMV 323 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~ 323 (362)
++||||++.+++|..-
T Consensus 26 v~~DTGSs~lWv~~~~ 41 (317)
T cd06098 26 VIFDTGSSNLWVPSSK 41 (317)
T ss_pred EEECCCccceEEecCC
Confidence 9999999999999743
No 72
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=20.53 E-value=1e+02 Score=28.63 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=13.8
Q ss_pred EEEcccccccccChH
Q 018004 308 TIIDSGTTLAYLPEM 322 (362)
Q Consensus 308 aiiDSGtt~~~lp~~ 322 (362)
++||||++.+++|..
T Consensus 26 v~~DTGS~~~wv~~~ 40 (317)
T cd05478 26 VIFDTGSSNLWVPSV 40 (317)
T ss_pred EEEeCCCccEEEecC
Confidence 999999999999964
No 73
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=20.48 E-value=1e+02 Score=28.34 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=14.1
Q ss_pred EEEcccccccccChHH
Q 018004 308 TIIDSGTTLAYLPEMV 323 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~ 323 (362)
++||||++.+++|..-
T Consensus 17 ~~iDTGS~~~wv~~~~ 32 (317)
T PF00026_consen 17 VLIDTGSSDTWVPSSN 32 (317)
T ss_dssp EEEETTBSSEEEEBTT
T ss_pred EEEecccceeeeceec
Confidence 8999999999999543
No 74
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=20.34 E-value=1.2e+02 Score=29.21 Aligned_cols=16 Identities=13% Similarity=-0.097 Sum_probs=14.0
Q ss_pred EEEEEcCCCeeeEeCC
Q 018004 90 YVQVDTGSDIMWVNCI 105 (362)
Q Consensus 90 ~v~~DTGSs~~Wv~~~ 105 (362)
.++||||++.+.++..
T Consensus 231 g~iiDSGTs~t~lp~~ 246 (362)
T cd05489 231 GVKLSTVVPYTVLRSD 246 (362)
T ss_pred cEEEecCCceEEECHH
Confidence 5999999999999863
No 75
>PTZ00165 aspartyl protease; Provisional
Probab=20.01 E-value=64 Score=32.40 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=15.3
Q ss_pred EEEcccccccccChHHH
Q 018004 308 TIIDSGTTLAYLPEMVY 324 (362)
Q Consensus 308 aiiDSGtt~~~lp~~~~ 324 (362)
+++|||++.+++|....
T Consensus 136 Vv~DTGSS~lWVps~~C 152 (482)
T PTZ00165 136 VVFDTGSSNLWIPSKEC 152 (482)
T ss_pred EEEeCCCCCEEEEchhc
Confidence 99999999999998654
Done!