Query 018005
Match_columns 362
No_of_seqs 141 out of 1870
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:19:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 99.9 1E-24 2.3E-29 187.8 24.0 208 106-340 1-230 (230)
2 KOG4441 Proteins containing BT 99.9 4.4E-24 9.5E-29 204.4 28.8 239 76-352 301-559 (571)
3 PHA02713 hypothetical protein; 99.9 4.7E-24 1E-28 205.0 24.7 235 77-347 273-542 (557)
4 KOG4441 Proteins containing BT 99.9 4E-20 8.6E-25 177.3 22.9 203 121-358 301-519 (571)
5 PHA02713 hypothetical protein; 99.8 4E-19 8.7E-24 171.0 21.7 201 121-356 272-507 (557)
6 PHA03098 kelch-like protein; P 99.8 1.5E-18 3.1E-23 168.0 25.2 240 79-357 267-530 (534)
7 PHA02790 Kelch-like protein; P 99.8 1.2E-18 2.7E-23 165.3 23.1 196 108-345 269-477 (480)
8 TIGR03547 muta_rot_YjhT mutatr 99.8 6E-18 1.3E-22 154.8 23.8 223 105-352 12-312 (346)
9 PLN02153 epithiospecifier prot 99.8 2.4E-17 5.2E-22 150.4 26.4 241 84-346 5-292 (341)
10 PHA02790 Kelch-like protein; P 99.8 1.3E-17 2.7E-22 158.4 20.3 187 76-290 287-476 (480)
11 PLN02193 nitrile-specifier pro 99.8 1.7E-16 3.8E-21 150.2 26.8 247 78-349 139-421 (470)
12 PRK14131 N-acetylneuraminic ac 99.8 1.3E-16 2.8E-21 147.3 22.9 226 105-355 33-337 (376)
13 PLN02153 epithiospecifier prot 99.7 1.7E-15 3.7E-20 138.2 24.4 203 76-293 50-293 (341)
14 TIGR03548 mutarot_permut cycli 99.7 1.3E-15 2.9E-20 137.9 23.1 199 122-350 40-291 (323)
15 PHA03098 kelch-like protein; P 99.7 4.3E-16 9.4E-21 150.8 20.5 195 77-296 312-523 (534)
16 PLN03215 ascorbic acid mannose 99.7 3.5E-15 7.6E-20 133.1 20.1 288 12-345 3-353 (373)
17 TIGR03547 muta_rot_YjhT mutatr 99.7 1.5E-14 3.2E-19 132.4 24.7 219 76-328 29-330 (346)
18 PRK14131 N-acetylneuraminic ac 99.7 4E-14 8.6E-19 130.8 26.7 234 76-344 50-374 (376)
19 TIGR03548 mutarot_permut cycli 99.6 5E-14 1.1E-18 127.7 22.7 221 78-328 41-312 (323)
20 PLN02193 nitrile-specifier pro 99.6 7.4E-14 1.6E-18 132.4 22.4 203 122-348 138-361 (470)
21 KOG4693 Uncharacterized conser 99.5 4.3E-12 9.3E-17 105.4 18.4 229 76-328 44-311 (392)
22 KOG4693 Uncharacterized conser 99.3 3.5E-10 7.6E-15 94.2 15.3 201 121-346 44-284 (392)
23 KOG0379 Kelch repeat-containin 99.0 2.8E-08 6.1E-13 94.4 19.1 204 77-295 89-312 (482)
24 KOG0379 Kelch repeat-containin 99.0 5.7E-08 1.2E-12 92.3 20.7 205 122-349 89-312 (482)
25 KOG1230 Protein containing rep 99.0 1E-07 2.3E-12 84.3 19.3 202 121-345 98-347 (521)
26 PF12937 F-box-like: F-box-lik 99.0 3.8E-10 8.2E-15 70.8 2.6 40 13-52 1-40 (47)
27 PF08268 FBA_3: F-box associat 98.9 1.9E-08 4E-13 78.2 11.5 86 202-296 1-93 (129)
28 PF00646 F-box: F-box domain; 98.8 1.3E-09 2.8E-14 68.8 0.3 43 12-54 2-44 (48)
29 smart00256 FBOX A Receptor for 98.7 8.1E-09 1.8E-13 62.7 2.2 38 16-53 1-38 (41)
30 KOG1230 Protein containing rep 98.7 2.3E-06 5.1E-11 76.0 17.0 166 170-357 99-302 (521)
31 PF07734 FBA_1: F-box associat 98.6 9.6E-07 2.1E-11 71.6 12.3 128 202-347 1-148 (164)
32 KOG0281 Beta-TrCP (transducin 98.4 1.4E-05 3E-10 69.5 14.9 39 13-51 75-117 (499)
33 KOG4152 Host cell transcriptio 98.0 0.00033 7.1E-09 64.3 15.3 214 110-346 42-310 (830)
34 COG3055 Uncharacterized protei 97.8 0.00071 1.5E-08 59.6 13.0 157 121-298 58-269 (381)
35 KOG4152 Host cell transcriptio 97.7 0.0043 9.3E-08 57.3 16.7 264 42-327 18-340 (830)
36 COG3055 Uncharacterized protei 97.6 0.0032 6.9E-08 55.6 14.3 159 169-353 58-270 (381)
37 PF13964 Kelch_6: Kelch motif 97.5 0.00031 6.7E-09 44.3 5.6 38 314-351 6-49 (50)
38 KOG2120 SCF ubiquitin ligase, 97.5 6E-05 1.3E-09 64.9 2.2 40 12-51 97-136 (419)
39 PF13964 Kelch_6: Kelch motif 97.4 0.0005 1.1E-08 43.3 5.2 36 198-233 3-44 (50)
40 KOG0274 Cdc4 and related F-box 97.3 0.031 6.7E-07 53.9 18.8 282 10-341 105-403 (537)
41 PF01344 Kelch_1: Kelch motif; 97.3 0.00065 1.4E-08 42.1 4.8 37 313-349 5-47 (47)
42 PF01344 Kelch_1: Kelch motif; 97.3 0.00076 1.7E-08 41.8 5.0 43 249-295 4-47 (47)
43 PF07646 Kelch_2: Kelch motif; 96.8 0.0024 5.1E-08 40.0 3.9 38 258-295 10-49 (49)
44 smart00612 Kelch Kelch domain. 96.7 0.0037 8.1E-08 38.4 4.5 44 158-207 1-47 (47)
45 PF08450 SGL: SMP-30/Gluconola 96.7 0.32 6.9E-06 42.0 18.1 208 110-359 11-232 (246)
46 PF13415 Kelch_3: Galactose ox 96.6 0.0048 1E-07 38.6 4.6 30 330-359 19-48 (49)
47 PF13418 Kelch_4: Galactose ox 96.3 0.01 2.3E-07 37.0 4.7 32 319-350 12-49 (49)
48 PF07646 Kelch_2: Kelch motif; 96.3 0.019 4.1E-07 35.9 5.7 37 313-349 5-49 (49)
49 PF07250 Glyoxal_oxid_N: Glyox 96.2 0.14 3E-06 43.9 12.4 155 170-351 47-211 (243)
50 KOG0316 Conserved WD40 repeat- 96.1 0.71 1.5E-05 38.9 16.4 214 109-341 27-260 (307)
51 KOG2997 F-box protein FBX9 [Ge 95.8 0.0032 7E-08 54.7 0.9 43 13-55 107-154 (366)
52 COG4257 Vgb Streptogramin lyas 95.6 0.79 1.7E-05 39.6 14.2 119 105-235 194-315 (353)
53 smart00612 Kelch Kelch domain. 95.4 0.025 5.4E-07 34.5 3.6 27 330-356 15-41 (47)
54 PF13418 Kelch_4: Galactose ox 94.9 0.046 1E-06 34.0 3.8 35 198-232 3-44 (49)
55 KOG2437 Muskelin [Signal trans 94.7 0.035 7.5E-07 51.4 3.7 141 196-347 260-421 (723)
56 PF05096 Glu_cyclase_2: Glutam 94.5 0.99 2.1E-05 39.1 12.0 151 158-344 57-209 (264)
57 PF13360 PQQ_2: PQQ-like domai 94.4 2.8 6E-05 35.7 21.8 187 109-343 35-235 (238)
58 PF13415 Kelch_3: Galactose ox 94.4 0.17 3.6E-06 31.5 5.5 28 121-148 19-46 (49)
59 TIGR01640 F_box_assoc_1 F-box 93.9 2.5 5.4E-05 36.1 13.6 148 76-227 70-230 (230)
60 PF07893 DUF1668: Protein of u 93.8 1.7 3.6E-05 39.8 12.8 134 206-356 76-227 (342)
61 PF07893 DUF1668: Protein of u 93.3 3 6.4E-05 38.1 13.7 122 103-232 69-214 (342)
62 PLN02772 guanylate kinase 93.2 0.66 1.4E-05 42.7 9.0 77 198-285 26-108 (398)
63 PF07250 Glyoxal_oxid_N: Glyox 93.1 0.95 2.1E-05 38.9 9.4 88 121-216 46-138 (243)
64 PRK11138 outer membrane biogen 92.7 8.5 0.00018 35.9 21.4 187 109-341 119-315 (394)
65 KOG2437 Muskelin [Signal trans 91.6 0.35 7.6E-06 45.1 5.2 159 126-291 234-419 (723)
66 PRK11028 6-phosphogluconolacto 91.1 11 0.00025 33.9 18.7 195 114-344 5-213 (330)
67 PRK11028 6-phosphogluconolacto 90.5 13 0.00028 33.5 26.1 224 105-359 85-327 (330)
68 PF13854 Kelch_5: Kelch motif 89.8 0.54 1.2E-05 28.1 3.3 37 244-283 2-38 (42)
69 smart00284 OLF Olfactomedin-li 89.5 13 0.00029 32.2 12.6 133 198-351 75-220 (255)
70 KOG0293 WD40 repeat-containing 89.4 17 0.00038 33.4 14.8 181 121-344 291-476 (519)
71 PF10282 Lactonase: Lactonase, 88.6 19 0.00042 32.8 18.5 248 79-349 18-288 (345)
72 PF02191 OLF: Olfactomedin-lik 88.2 16 0.00036 31.6 13.8 132 199-351 71-215 (250)
73 PRK11138 outer membrane biogen 88.1 22 0.00049 33.0 21.5 195 109-344 68-282 (394)
74 KOG4341 F-box protein containi 88.0 0.27 5.9E-06 45.0 1.5 37 14-50 73-109 (483)
75 KOG0310 Conserved WD40 repeat- 87.9 11 0.00025 35.1 11.7 174 127-340 8-186 (487)
76 PF05096 Glu_cyclase_2: Glutam 87.1 20 0.00043 31.3 12.9 139 76-231 68-209 (264)
77 KOG0310 Conserved WD40 repeat- 86.6 28 0.00061 32.6 13.7 121 205-360 164-288 (487)
78 PF13013 F-box-like_2: F-box-l 85.2 0.78 1.7E-05 34.0 2.5 39 3-41 12-50 (109)
79 TIGR03300 assembly_YfgL outer 84.9 32 0.00069 31.7 22.2 210 77-344 76-305 (377)
80 COG4257 Vgb Streptogramin lyas 84.6 27 0.00058 30.6 18.5 213 81-348 88-315 (353)
81 TIGR03300 assembly_YfgL outer 84.3 27 0.00057 32.2 12.9 107 200-344 59-171 (377)
82 COG2706 3-carboxymuconate cycl 83.9 32 0.0007 31.0 26.1 159 168-353 166-338 (346)
83 PF13360 PQQ_2: PQQ-like domai 83.3 27 0.00058 29.5 19.3 187 121-345 3-200 (238)
84 PF12768 Rax2: Cortical protei 82.2 34 0.00075 30.2 11.9 65 217-293 16-81 (281)
85 PF08450 SGL: SMP-30/Gluconola 82.0 32 0.00068 29.5 11.9 68 206-294 11-78 (246)
86 TIGR03074 PQQ_membr_DH membran 80.4 35 0.00076 34.9 12.7 32 199-231 187-220 (764)
87 PLN02919 haloacid dehalogenase 80.4 88 0.0019 33.6 18.8 165 109-284 693-889 (1057)
88 COG4946 Uncharacterized protei 80.4 53 0.0012 31.0 18.3 166 49-233 263-439 (668)
89 KOG0291 WD40-repeat-containing 79.0 75 0.0016 31.9 17.7 158 105-295 356-518 (893)
90 KOG2055 WD40 repeat protein [G 78.7 41 0.00089 31.5 11.3 106 206-340 268-376 (514)
91 TIGR03866 PQQ_ABC_repeats PQQ- 78.6 44 0.00095 29.0 20.4 181 116-342 6-191 (300)
92 PF13570 PQQ_3: PQQ-like domai 76.4 5.9 0.00013 23.1 3.8 26 200-226 15-40 (40)
93 PF07433 DUF1513: Protein of u 75.9 59 0.0013 29.1 23.7 220 112-351 19-260 (305)
94 KOG0291 WD40-repeat-containing 73.0 1.1E+02 0.0024 30.9 15.7 109 206-345 361-473 (893)
95 KOG0292 Vesicle coat complex C 72.5 1.1E+02 0.0025 31.5 13.2 91 169-283 228-321 (1202)
96 PLN02772 guanylate kinase 72.4 18 0.00039 33.6 7.5 54 158-214 36-94 (398)
97 TIGR03075 PQQ_enz_alc_DH PQQ-d 71.0 87 0.0019 30.6 12.4 31 200-231 63-95 (527)
98 PF12768 Rax2: Cortical protei 70.2 52 0.0011 29.1 9.7 113 169-293 16-130 (281)
99 PLN02919 haloacid dehalogenase 69.0 1.7E+02 0.0037 31.5 22.6 223 106-342 631-892 (1057)
100 KOG2502 Tub family proteins [G 67.5 3.5 7.5E-05 36.9 1.8 39 11-49 43-89 (355)
101 KOG0645 WD40 repeat protein [G 66.5 90 0.0019 27.3 16.7 111 111-232 27-143 (312)
102 PF10282 Lactonase: Lactonase, 66.2 1.1E+02 0.0023 28.0 22.6 153 168-346 165-332 (345)
103 KOG0294 WD40 repeat-containing 65.5 1E+02 0.0022 27.6 12.4 89 121-226 149-238 (362)
104 KOG1310 WD40 repeat protein [G 65.2 40 0.00087 32.4 8.2 112 109-226 60-179 (758)
105 KOG0296 Angio-associated migra 65.2 1.1E+02 0.0024 27.9 12.6 109 206-345 75-185 (399)
106 PF13859 BNR_3: BNR repeat-lik 65.1 18 0.0004 32.4 6.0 83 200-296 124-218 (310)
107 KOG0292 Vesicle coat complex C 65.1 16 0.00034 37.2 5.8 53 274-340 227-282 (1202)
108 KOG0300 WD40 repeat-containing 61.9 59 0.0013 29.0 8.1 74 274-360 377-467 (481)
109 KOG0306 WD40-repeat-containing 60.2 2E+02 0.0043 29.1 15.0 22 258-284 518-539 (888)
110 PF13919 ASXH: Asx homology do 58.3 7.6 0.00016 30.2 2.0 50 8-57 39-108 (138)
111 KOG0647 mRNA export protein (c 58.0 1.4E+02 0.003 26.6 9.7 63 206-283 83-145 (347)
112 PF09372 PRANC: PRANC domain; 56.8 8.6 0.00019 27.8 2.0 25 11-35 70-94 (97)
113 PTZ00420 coronin; Provisional 56.4 2.1E+02 0.0046 28.3 21.7 203 111-347 87-302 (568)
114 PTZ00334 trans-sialidase; Prov 55.9 72 0.0016 32.6 8.7 82 200-295 263-354 (780)
115 PF03178 CPSF_A: CPSF A subuni 55.7 67 0.0015 28.8 8.1 75 258-351 97-172 (321)
116 cd01207 Ena-Vasp Enabled-VASP- 54.8 57 0.0012 24.3 6.0 43 121-163 9-51 (111)
117 KOG2055 WD40 repeat protein [G 54.8 1.9E+02 0.0042 27.3 14.9 149 106-283 265-417 (514)
118 KOG0647 mRNA export protein (c 54.1 1.6E+02 0.0035 26.2 11.9 146 109-284 82-229 (347)
119 KOG0286 G-protein beta subunit 54.1 1.6E+02 0.0035 26.2 17.0 139 121-283 77-217 (343)
120 COG1520 FOG: WD40-like repeat 53.5 1.8E+02 0.004 26.7 12.3 134 170-343 36-178 (370)
121 KOG0281 Beta-TrCP (transducin 53.1 1.8E+02 0.0039 26.5 11.0 113 202-340 365-479 (499)
122 smart00564 PQQ beta-propeller 52.0 37 0.00081 18.3 4.2 24 203-227 3-26 (33)
123 KOG0266 WD40 repeat-containing 51.6 2.2E+02 0.0049 27.1 18.7 146 108-283 168-318 (456)
124 KOG1332 Vesicle coat complex C 51.4 1.6E+02 0.0035 25.5 12.2 109 168-293 184-296 (299)
125 PF02897 Peptidase_S9_N: Proly 50.5 2.2E+02 0.0047 26.6 20.4 156 155-345 238-411 (414)
126 TIGR02276 beta_rpt_yvtn 40-res 50.2 46 0.001 19.0 4.2 26 319-344 3-28 (42)
127 PF01011 PQQ: PQQ enzyme repea 49.7 45 0.00097 19.0 4.0 24 320-344 1-26 (38)
128 TIGR03075 PQQ_enz_alc_DH PQQ-d 49.1 1.3E+02 0.0028 29.4 9.3 77 170-267 442-522 (527)
129 cd00216 PQQ_DH Dehydrogenases 48.6 2.6E+02 0.0056 27.0 12.7 32 199-231 54-87 (488)
130 KOG0282 mRNA splicing factor [ 47.5 2.6E+02 0.0056 26.6 12.6 108 110-229 226-334 (503)
131 PF06433 Me-amine-dh_H: Methyl 47.4 2.2E+02 0.0049 25.9 13.1 121 207-344 196-326 (342)
132 TIGR03074 PQQ_membr_DH membran 47.1 1.3E+02 0.0029 30.9 9.2 62 105-166 686-748 (764)
133 KOG0294 WD40 repeat-containing 46.5 2.2E+02 0.0048 25.6 9.5 29 199-227 45-73 (362)
134 COG4946 Uncharacterized protei 46.4 2.7E+02 0.0059 26.6 13.4 29 321-350 415-443 (668)
135 COG2706 3-carboxymuconate cycl 45.7 2.4E+02 0.0051 25.7 16.2 112 160-286 206-324 (346)
136 PRK04043 tolB translocation pr 45.5 2.7E+02 0.0058 26.3 20.7 188 121-347 213-409 (419)
137 KOG0278 Serine/threonine kinas 44.7 2.1E+02 0.0046 24.9 13.4 135 119-286 163-300 (334)
138 KOG0289 mRNA splicing factor [ 44.5 2.8E+02 0.006 26.2 13.7 102 169-296 369-474 (506)
139 TIGR02658 TTQ_MADH_Hv methylam 44.1 2.6E+02 0.0056 25.7 19.4 98 76-181 27-140 (352)
140 TIGR03118 PEPCTERM_chp_1 conse 43.6 2.5E+02 0.0054 25.3 11.0 124 207-344 152-285 (336)
141 KOG0285 Pleiotropic regulator 43.3 2.7E+02 0.0058 25.6 10.2 95 214-340 170-267 (460)
142 KOG0308 Conserved WD40 repeat- 43.1 96 0.0021 30.6 7.0 118 205-340 83-203 (735)
143 TIGR02658 TTQ_MADH_Hv methylam 41.8 2.8E+02 0.0061 25.5 22.2 239 76-343 77-335 (352)
144 PF09910 DUF2139: Uncharacteri 41.7 2.6E+02 0.0056 25.0 10.4 103 218-343 79-186 (339)
145 KOG0639 Transducin-like enhanc 41.1 3.4E+02 0.0073 26.2 10.0 64 206-284 476-540 (705)
146 PF03088 Str_synth: Strictosid 41.0 45 0.00097 23.7 3.5 16 330-345 37-52 (89)
147 cd01206 Homer Homer type EVH1 40.3 44 0.00096 24.7 3.4 41 121-164 11-52 (111)
148 KOG0640 mRNA cleavage stimulat 39.6 2.8E+02 0.0062 24.9 9.0 96 169-284 238-336 (430)
149 KOG0649 WD40 repeat protein [G 39.3 2.6E+02 0.0056 24.3 9.1 115 207-345 127-242 (325)
150 TIGR03032 conserved hypothetic 38.9 3E+02 0.0065 24.9 12.4 137 200-352 106-245 (335)
151 TIGR03866 PQQ_ABC_repeats PQQ- 37.1 2.7E+02 0.0058 23.9 24.8 197 108-343 39-242 (300)
152 PF03022 MRJP: Major royal jel 36.2 2.2E+02 0.0047 25.3 8.0 28 320-347 78-106 (287)
153 PTZ00421 coronin; Provisional 36.0 4.1E+02 0.009 25.7 22.8 199 110-345 87-297 (493)
154 cd00216 PQQ_DH Dehydrogenases 35.3 2.8E+02 0.006 26.8 9.2 54 202-268 402-457 (488)
155 KOG0266 WD40 repeat-containing 35.1 4.1E+02 0.0088 25.4 12.5 106 206-343 214-323 (456)
156 PF12458 DUF3686: ATPase invol 33.7 3.3E+02 0.0071 25.7 8.6 60 207-282 320-383 (448)
157 smart00284 OLF Olfactomedin-li 33.4 3.3E+02 0.0071 23.8 15.3 142 109-267 82-243 (255)
158 KOG0645 WD40 repeat protein [G 31.6 3.6E+02 0.0079 23.7 15.8 158 159-350 29-193 (312)
159 PF03089 RAG2: Recombination a 30.5 1.4E+02 0.003 26.5 5.4 55 219-282 133-187 (337)
160 PLN00181 protein SPA1-RELATED; 30.2 6.4E+02 0.014 26.1 18.3 59 211-284 549-607 (793)
161 KOG4499 Ca2+-binding protein R 30.0 76 0.0016 27.2 3.7 43 316-359 219-261 (310)
162 KOG0316 Conserved WD40 repeat- 29.7 3.7E+02 0.008 23.2 10.2 99 120-230 80-178 (307)
163 PF02191 OLF: Olfactomedin-lik 29.3 3.8E+02 0.0082 23.3 15.3 142 109-267 77-238 (250)
164 PRK13684 Ycf48-like protein; P 28.0 4.6E+02 0.01 23.8 13.0 162 131-325 119-285 (334)
165 KOG3881 Uncharacterized conser 28.0 79 0.0017 29.0 3.7 78 274-357 172-252 (412)
166 KOG2321 WD40 repeat protein [G 27.9 6E+02 0.013 25.1 11.2 122 50-180 133-261 (703)
167 KOG1036 Mitotic spindle checkp 27.0 4.6E+02 0.01 23.5 10.4 130 168-340 34-165 (323)
168 TIGR02608 delta_60_rpt delta-6 27.0 1.7E+02 0.0038 18.6 4.9 30 258-287 10-39 (55)
169 KOG1445 Tumor-specific antigen 26.8 6E+02 0.013 25.5 9.4 67 206-282 731-797 (1012)
170 PF05935 Arylsulfotrans: Aryls 26.5 5.5E+02 0.012 24.7 9.5 130 206-348 158-311 (477)
171 COG3386 Gluconolactonase [Carb 26.4 3.4E+02 0.0075 24.4 7.6 27 207-233 37-63 (307)
172 smart00135 LY Low-density lipo 26.2 1.3E+02 0.0028 16.9 3.6 22 205-226 19-40 (43)
173 PLN00181 protein SPA1-RELATED; 25.5 7.7E+02 0.017 25.5 20.5 97 117-227 551-650 (793)
174 PF08268 FBA_3: F-box associat 24.6 3.1E+02 0.0067 20.6 8.1 62 168-232 19-87 (129)
175 PF14377 DUF4414: Domain of un 24.5 49 0.0011 24.5 1.6 19 8-26 1-19 (108)
176 KOG0289 mRNA splicing factor [ 24.4 6.1E+02 0.013 24.0 13.0 74 105-185 395-470 (506)
177 TIGR02800 propeller_TolB tol-p 24.2 5.7E+02 0.012 23.6 19.4 185 122-346 171-362 (417)
178 KOG0639 Transducin-like enhanc 23.5 6.9E+02 0.015 24.2 10.9 60 168-231 486-545 (705)
179 cd00260 Sialidase Sialidases o 23.2 5.6E+02 0.012 23.1 9.7 82 201-295 150-242 (351)
180 TIGR03032 conserved hypothetic 23.2 2.7E+02 0.0058 25.2 6.0 55 199-268 205-260 (335)
181 PF14377 DUF4414: Domain of un 22.3 74 0.0016 23.5 2.2 23 5-27 42-64 (108)
182 KOG0279 G protein beta subunit 22.2 5.6E+02 0.012 22.7 17.4 138 120-285 126-264 (315)
183 KOG0274 Cdc4 and related F-box 21.5 7.9E+02 0.017 24.2 18.9 110 202-342 376-486 (537)
184 KOG0265 U5 snRNP-specific prot 21.2 3.7E+02 0.0079 24.1 6.3 67 258-343 57-125 (338)
185 PF06881 Elongin_A: RNA polyme 20.9 87 0.0019 23.1 2.3 36 13-48 4-47 (109)
186 KOG3926 F-box proteins [Amino 20.7 71 0.0015 27.9 1.9 33 10-42 199-232 (332)
187 PF15232 DUF4585: Domain of un 20.6 89 0.0019 21.2 2.0 18 124-141 32-49 (75)
188 KOG1446 Histone H3 (Lys4) meth 20.1 6.4E+02 0.014 22.6 12.9 92 168-283 35-130 (311)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.94 E-value=1e-24 Score=187.79 Aligned_cols=208 Identities=25% Similarity=0.423 Sum_probs=148.3
Q ss_pred EecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCC---Cc--cceEEEEeCCCceEEEEEeeec---CCCeEEEEeCC
Q 018005 106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP---FD--FELLTLVSTPSGYKIFMLFAKS---FPNYAFVYDST 177 (362)
Q Consensus 106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~---~~--~~~~~~~~~~~~ykv~~~~~~~---~~~~~~vy~s~ 177 (362)
+++||||||+... ..++||||.|++++.||+++.+ .. ..++|++..+++|||+.+.... ....++||+++
T Consensus 1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence 3689999998764 7899999999999999976542 11 2467888878999999987642 23589999999
Q ss_pred CCcccccccCCCCccccccCCCcccEEECCEEEEEecCC-----cEEEEEEcCCCeeec-CCCCCcccccCCCCcc----
Q 018005 178 DQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWET-PNDANDHMTMMLPHEL---- 247 (362)
Q Consensus 178 ~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w~~-~~~p~~~~~~~~p~~~---- 247 (362)
+++|+... ..+.... ....+|++||.+||+.... ..|++||+.+|+|+. ++ +|...
T Consensus 79 ~~~Wr~~~--~~~~~~~---~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~---------~P~~~~~~~ 144 (230)
T TIGR01640 79 SNSWRTIE--CSPPHHP---LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP---------LPCGNSDSV 144 (230)
T ss_pred CCCccccc--cCCCCcc---ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee---------cCccccccc
Confidence 99999987 3333111 1223999999999997532 279999999999994 55 33322
Q ss_pred cccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC--EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEE
Q 018005 248 TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVC 325 (362)
Q Consensus 248 ~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 325 (362)
....|+ + ++|+|+++.... ...+++||.|++.+. |++..+++.....++.. . ....++.+++.|++.
T Consensus 145 ~~~~L~-~--~~G~L~~v~~~~---~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~----~-~~~~~~~~~g~I~~~ 213 (230)
T TIGR01640 145 DYLSLI-N--YKGKLAVLKQKK---DTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVD----D-NFLSGFTDKGEIVLC 213 (230)
T ss_pred cceEEE-E--ECCEEEEEEecC---CCCcEEEEEECCCCCCceeEEEEEcCcchhhhhh----h-eeEeEEeeCCEEEEE
Confidence 234566 4 899999997732 224599999986543 99999887533322221 1 224456677888877
Q ss_pred eec-CCe-EEEEECCCC
Q 018005 326 CYT-WPE-ILYYNVARR 340 (362)
Q Consensus 326 ~~~-~~~-v~~yd~~~~ 340 (362)
.+. .+. ++.||+++|
T Consensus 214 ~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 214 CEDENPFYIFYYNVGEN 230 (230)
T ss_pred eCCCCceEEEEEeccCC
Confidence 643 234 999999886
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=4.4e-24 Score=204.42 Aligned_cols=239 Identities=15% Similarity=0.170 Sum_probs=185.6
Q ss_pred ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCC------CeEEEEeCCcCceeeccCCCCCCccceEE
Q 018005 76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTYPFDFELLT 149 (362)
Q Consensus 76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~w~~lP~~~~~~~~~~~~ 149 (362)
..+..|||..+.|..+. .++.++....+++.+|.||+.++.+ +.+.+|||.+++|..+|+|..+|...+++
T Consensus 301 ~~ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA 377 (571)
T ss_pred ceeEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE
Confidence 45778999999999986 3344555667888899999988754 37899999999999999998888776665
Q ss_pred EEeCCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC------CcEEE
Q 018005 150 LVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------PFSIV 220 (362)
Q Consensus 150 ~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~------~~~i~ 220 (362)
... .+|+++||... ..++|.||+.+++|...+ .|+. .+..+..+.++|++|.+++. -.++.
T Consensus 378 ~l~----g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~----~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve 447 (571)
T KOG4441|consen 378 VLD----GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLT----RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVE 447 (571)
T ss_pred EEC----CEEEEEeccccccccccEEEecCCCCcccccC--CCCc----ceeeeEEEEECCEEEEEcCcCCCccccceEE
Confidence 443 38999998753 348999999999999998 6665 34677788999999999873 25799
Q ss_pred EEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHH
Q 018005 221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCR 300 (362)
Q Consensus 221 ~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~ 300 (362)
+|||.+++|+.++ | |+..+.+..+.+ .+|+||++||..+.....+++.|+. ..++|+.+..|..
T Consensus 448 ~YDP~t~~W~~~~-~-------M~~~R~~~g~a~---~~~~iYvvGG~~~~~~~~~VE~ydp-~~~~W~~v~~m~~---- 511 (571)
T KOG4441|consen 448 CYDPETNTWTLIA-P-------MNTRRSGFGVAV---LNGKIYVVGGFDGTSALSSVERYDP-ETNQWTMVAPMTS---- 511 (571)
T ss_pred EEcCCCCceeecC-C-------cccccccceEEE---ECCEEEEECCccCCCccceEEEEcC-CCCceeEcccCcc----
Confidence 9999999999863 6 777777777774 9999999999875434556777744 2445999987742
Q ss_pred HhhhccccCCccEEEEeeCCEEEEEeecC-----CeEEEEECCCCceEEcCCCCCCC
Q 018005 301 KFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILYYNVARRTWHWLPSCPSLP 352 (362)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~yd~~~~~w~~~~~~~~~~ 352 (362)
......++..++.||+.++.. ..+.+||+++++|+..+. +...
T Consensus 512 --------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~-~~~~ 559 (571)
T KOG4441|consen 512 --------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE-PESG 559 (571)
T ss_pred --------ccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC-cccc
Confidence 122344567789999987532 359999999999999988 4433
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=4.7e-24 Score=204.98 Aligned_cols=235 Identities=11% Similarity=0.111 Sum_probs=173.8
Q ss_pred eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCC------CeEEEEeCCcCceeeccCCCCCCccceEEE
Q 018005 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTYPFDFELLTL 150 (362)
Q Consensus 77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~ 150 (362)
.+..||+..++|..++ ++|.+.....+++.+|.|++.++.. ..+.+|||.+++|..+|+++.++...+++.
T Consensus 273 ~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 4678999999999986 3333444445667788888877632 468899999999999999988776655544
Q ss_pred EeCCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC-----------
Q 018005 151 VSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----------- 216 (362)
Q Consensus 151 ~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~----------- 216 (362)
... +|+++||... ...+++||+.+++|+..+ .||. .+.....+.++|++|++|+..
T Consensus 350 ~~g----~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~--~mp~----~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 350 IDD----TIYAIGGQNGTNVERTIECYTMGDDKWKMLP--DMPI----ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred ECC----EEEEECCcCCCCCCceEEEEECCCCeEEECC--CCCc----ccccccEEEECCEEEEEeCCCccccccccccc
Confidence 333 8999998643 247999999999999988 7775 234566788999999998742
Q ss_pred ------------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCc-cceEEEEEEC
Q 018005 217 ------------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI-STTMKLWELG 283 (362)
Q Consensus 217 ------------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~-~~~i~vw~l~ 283 (362)
..+.+|||.+++|+.+. | ||..+....+++ .+|+||++||..+... ...+++|+.+
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~-------m~~~r~~~~~~~---~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLP-N-------FWTGTIRPGVVS---HKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecC-C-------CCcccccCcEEE---ECCEEEEEeCCCCCCccceeEEEecCC
Confidence 35899999999999864 5 666666666774 8999999998643221 2346677442
Q ss_pred CCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCC--eEEEEECCCCceEEcCC
Q 018005 284 CGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP--EILYYNVARRTWHWLPS 347 (362)
Q Consensus 284 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~v~~yd~~~~~w~~~~~ 347 (362)
.++.|+.+.+||... ....++..+|.||+.++..+ .+.+||+.+++|+.+.+
T Consensus 489 ~~~~W~~~~~m~~~r------------~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 489 TYNGWELITTTESRL------------SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CCCCeeEccccCccc------------ccceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 114599999987422 22445567899999987555 68999999999998843
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.86 E-value=4e-20 Score=177.28 Aligned_cols=203 Identities=13% Similarity=0.110 Sum_probs=160.0
Q ss_pred CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec-C---CCeEEEEeCCCCcccccccCCCCcccccc
Q 018005 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-F---PNYAFVYDSTDQSWSKFDIDGFPSMILSQ 196 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~-~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 196 (362)
+.+..|||.+++|..+.+++.++...++++..+ +|+++||.. . ...+++||+.+++|...+ .|.. .
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~----~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a--~M~~----~ 370 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG----KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA--PMNT----K 370 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECC----EEEEEccccCCCcccceEEEecCCCCceeccC--CccC----c
Confidence 578899999999999999998887666665544 899999876 2 349999999999999988 6765 4
Q ss_pred CCCcccEEECCEEEEEecCC-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC
Q 018005 197 SSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (362)
Q Consensus 197 ~~~~~~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~ 271 (362)
+.....+.++|.+|++||.. .++..||+.+++|+.+. | |+..+..+.+++ .+|+||++||....
T Consensus 371 R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~-------m~~~r~~~gv~~---~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 371 RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-P-------MLTRRSGHGVAV---LGGKLYIIGGGDGS 439 (571)
T ss_pred cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-C-------CCcceeeeEEEE---ECCEEEEEcCcCCC
Confidence 45677889999999999743 46999999999999974 5 666666677764 99999999997654
Q ss_pred C-ccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCC-----eEEEEECCCCceEE
Q 018005 272 G-ISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP-----EILYYNVARRTWHW 344 (362)
Q Consensus 272 ~-~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~v~~yd~~~~~w~~ 344 (362)
. ....++.| |+.. .|+.+.+|+.. +....++..++.||+.++..+ .++.||+++++|..
T Consensus 440 ~~~l~sve~Y--DP~t~~W~~~~~M~~~------------R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 440 SNCLNSVECY--DPETNTWTLIAPMNTR------------RSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred ccccceEEEE--cCCCCceeecCCcccc------------cccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 4 45788888 5554 59999999631 223345577889999876433 48999999999999
Q ss_pred cCCCCCCCCCCCcc
Q 018005 345 LPSCPSLPHKWSCG 358 (362)
Q Consensus 345 ~~~~~~~~~~~~~~ 358 (362)
++.++...+...|+
T Consensus 506 v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 506 VAPMTSPRSAVGVV 519 (571)
T ss_pred cccCccccccccEE
Confidence 98888887776654
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.83 E-value=4e-19 Score=171.00 Aligned_cols=201 Identities=14% Similarity=0.159 Sum_probs=147.9
Q ss_pred CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec-C---CCeEEEEeCCCCcccccccCCCCcccccc
Q 018005 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-F---PNYAFVYDSTDQSWSKFDIDGFPSMILSQ 196 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~-~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 196 (362)
..+..|||.+++|..+++++.++...+.+...+ +|+++||.. . ...+++||+.++.|+..+ .||. .
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~----~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~--~m~~----~ 341 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDN----EIIIAGGYNFNNPSLNKVYKINIENKIHVELP--PMIK----N 341 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECC----EEEEEcCCCCCCCccceEEEEECCCCeEeeCC--CCcc----h
Confidence 357889999999999999987765444433332 789998853 1 347999999999999888 6765 3
Q ss_pred CCCcccEEECCEEEEEecCC-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC
Q 018005 197 SSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (362)
Q Consensus 197 ~~~~~~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~ 271 (362)
+.....+.++|++|++||.. .++.+||+.+++|+.+. | ||..+....+++ ++|+||++||....
T Consensus 342 R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~-------mp~~r~~~~~~~---~~g~IYviGG~~~~ 410 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP-D-------MPIALSSYGMCV---LDQYIYIIGGRTEH 410 (557)
T ss_pred hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC-C-------CCcccccccEEE---ECCEEEEEeCCCcc
Confidence 34567889999999999842 46899999999999864 5 777776666664 89999999986421
Q ss_pred C------------------ccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC---
Q 018005 272 G------------------ISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--- 329 (362)
Q Consensus 272 ~------------------~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--- 329 (362)
. ....+++| |... .|+.+..|+... ....++..+|.||+.++..
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~ve~Y--DP~td~W~~v~~m~~~r------------~~~~~~~~~~~IYv~GG~~~~~ 476 (557)
T PHA02713 411 IDYTSVHHMNSIDMEEDTHSSNKVIRY--DTVNNIWETLPNFWTGT------------IRPGVVSHKDDIYVVCDIKDEK 476 (557)
T ss_pred cccccccccccccccccccccceEEEE--CCCCCeEeecCCCCccc------------ccCcEEEECCEEEEEeCCCCCC
Confidence 1 12456666 5554 599999886321 1223456778899987542
Q ss_pred ---CeEEEEECCC-CceEEcCCCCCCCCCCC
Q 018005 330 ---PEILYYNVAR-RTWHWLPSCPSLPHKWS 356 (362)
Q Consensus 330 ---~~v~~yd~~~-~~w~~~~~~~~~~~~~~ 356 (362)
..+++||+++ ++|+.++.+|.......
T Consensus 477 ~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 477 NVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceeEEEecCCCCCCeeEccccCcccccce
Confidence 2478999999 89999999998655443
No 6
>PHA03098 kelch-like protein; Provisional
Probab=99.83 E-value=1.5e-18 Score=168.03 Aligned_cols=240 Identities=14% Similarity=0.084 Sum_probs=164.6
Q ss_pred eeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCC------CeEEEEeCCcCceeeccCCCCCCccceEEEEe
Q 018005 79 PLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVS 152 (362)
Q Consensus 79 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~ 152 (362)
..|++...+|..++. .+. ......+..++.+++.++.. ..++.|||.|++|..+|+++.++...+.+...
T Consensus 267 ~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~ 342 (534)
T PHA03098 267 ITNYSPLSEINTIID---IHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN 342 (534)
T ss_pred eecchhhhhcccccC---ccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEEC
Confidence 346666777776641 111 11223445566666666521 36899999999999999988776655544332
Q ss_pred CCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC------cEEEEEE
Q 018005 153 TPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FSIVRFD 223 (362)
Q Consensus 153 ~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~------~~i~~~D 223 (362)
. +++++||... ...+++||+.+++|+..+ .+|. .+..+..+.++|++|.+|+.. ..+.+||
T Consensus 343 ~----~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~lp~----~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 343 N----RIYVIGGIYNSISLNTVESWKPGESKWREEP--PLIF----PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred C----EEEEEeCCCCCEecceEEEEcCCCCceeeCC--CcCc----CCccceEEEECCEEEEECCcCCCCcccceEEEEe
Confidence 2 7888888642 347999999999999988 6665 235667788999999998731 4689999
Q ss_pred cCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCc---cceEEEEEECCCC-CEEEEecccHHHH
Q 018005 224 LENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI---STTMKLWELGCGG-NWIEVERVPEMMC 299 (362)
Q Consensus 224 ~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~---~~~i~vw~l~~~~-~W~~v~~~p~~~~ 299 (362)
+.+++|+.+. | +|..+..+..+. .+|+||++||...... ... +|.+|... +|+++..+|...
T Consensus 413 ~~t~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~--v~~yd~~~~~W~~~~~~~~~r- 478 (534)
T PHA03098 413 LNTNKWSKGS-P-------LPISHYGGCAIY---HDGKIYVIGGISYIDNIKVYNI--VESYNPVTNKWTELSSLNFPR- 478 (534)
T ss_pred CCCCeeeecC-C-------CCccccCceEEE---ECCEEEEECCccCCCCCcccce--EEEecCCCCceeeCCCCCccc-
Confidence 9999999864 4 666555555553 8999999998643221 223 45556554 499998775321
Q ss_pred HHhhhccccCCccEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEEcCCCCCCCCCCCc
Q 018005 300 RKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCPSLPHKWSC 357 (362)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 357 (362)
....++..++.||+.++. ...+.+||+++++|+.++..|.....+.|
T Consensus 479 -----------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~ 530 (534)
T PHA03098 479 -----------INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSLEK 530 (534)
T ss_pred -----------ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccceee
Confidence 112223447888888753 24689999999999999988876555544
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=99.83 E-value=1.2e-18 Score=165.27 Aligned_cols=196 Identities=9% Similarity=0.063 Sum_probs=144.5
Q ss_pred cCCceEEEecCCC-----CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccc
Q 018005 108 SSKGLLCFSLPSS-----SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS 182 (362)
Q Consensus 108 s~~Gll~~~~~~~-----~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~ 182 (362)
..++.+++.++.. ..+..|||.+++|..+|+++.++...+.+... .+|+++||......++.||+.+++|.
T Consensus 269 ~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~----~~iYviGG~~~~~sve~ydp~~n~W~ 344 (480)
T PHA02790 269 HVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPAN----NKLYVVGGLPNPTSVERWFHGDAAWV 344 (480)
T ss_pred EECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEEC----CEEEEECCcCCCCceEEEECCCCeEE
Confidence 3566676666532 36788999999999999998777554443322 28999998755567999999999999
Q ss_pred ccccCCCCccccccCCCcccEEECCEEEEEecCC---cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCC
Q 018005 183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP---FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEES 259 (362)
Q Consensus 183 ~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~---~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~ 259 (362)
..+ .||. .+..+.++.++|++|++|+.. ..+.+||+.+++|+.++ | +|..+.....++ .+
T Consensus 345 ~~~--~l~~----~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~-------m~~~r~~~~~~~---~~ 407 (480)
T PHA02790 345 NMP--SLLK----PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-S-------TYYPHYKSCALV---FG 407 (480)
T ss_pred ECC--CCCC----CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCC-C-------CCCccccceEEE---EC
Confidence 988 6765 234567889999999998742 45889999999999863 4 555555555553 89
Q ss_pred CeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC-----CeEEE
Q 018005 260 NKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILY 334 (362)
Q Consensus 260 G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~ 334 (362)
|+||++|+. .++|.. +.+.|+.+..|+... ....++..+|.||+.++.. ..+++
T Consensus 408 ~~IYv~GG~--------~e~ydp-~~~~W~~~~~m~~~r------------~~~~~~v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 408 RRLFLVGRN--------AEFYCE-SSNTWTLIDDPIYPR------------DNPELIIVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred CEEEEECCc--------eEEecC-CCCcEeEcCCCCCCc------------cccEEEEECCEEEEECCcCCCcccceEEE
Confidence 999999862 467755 345699998886311 2234456788999987632 46899
Q ss_pred EECCCCceEEc
Q 018005 335 YNVARRTWHWL 345 (362)
Q Consensus 335 yd~~~~~w~~~ 345 (362)
||+++++|+.-
T Consensus 467 Yd~~~~~W~~~ 477 (480)
T PHA02790 467 YNNRTYSWNIW 477 (480)
T ss_pred EECCCCeEEec
Confidence 99999999753
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.81 E-value=6e-18 Score=154.82 Aligned_cols=223 Identities=17% Similarity=0.231 Sum_probs=148.1
Q ss_pred EEecCCceEEEecCC-CCeEEEEeC--CcCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecC---------CCeE
Q 018005 105 LLSSSKGLLCFSLPS-SSSFLVCNL--VTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF---------PNYA 171 (362)
Q Consensus 105 ~~~s~~Gll~~~~~~-~~~~~v~NP--~t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~---------~~~~ 171 (362)
..++.++-|++.++. ...++++|+ .+++|..+|+++. ++...+++.... +|+++||... ...+
T Consensus 12 ~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~----~iYv~GG~~~~~~~~~~~~~~~v 87 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDG----KLYVFGGIGKANSEGSPQVFDDV 87 (346)
T ss_pred eEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECC----EEEEEeCCCCCCCCCcceecccE
Confidence 455567778877653 357888885 6788999999874 554444443332 8999988531 2479
Q ss_pred EEEeCCCCcccccccCCCCccccccCCCcccE-EECCEEEEEecCC----------------------------------
Q 018005 172 FVYDSTDQSWSKFDIDGFPSMILSQSSHQEGV-FYKGSLYFTTPEP---------------------------------- 216 (362)
Q Consensus 172 ~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v-~~~G~ly~~~~~~---------------------------------- 216 (362)
++||+.+++|+..+. .+|. .+..+.++ .++|+||++++..
T Consensus 88 ~~Yd~~~~~W~~~~~-~~p~----~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T TIGR03547 88 YRYDPKKNSWQKLDT-RSPV----GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPE 162 (346)
T ss_pred EEEECCCCEEecCCC-CCCC----cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChh
Confidence 999999999998861 1222 12223334 6899999998742
Q ss_pred -----cEEEEEEcCCCeeecCCCCCcccccCCCC-cccccceeecccCCCeEEEEEEeecCC-ccceEEEEEECCCC-CE
Q 018005 217 -----FSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIGGVGRNG-ISTTMKLWELGCGG-NW 288 (362)
Q Consensus 217 -----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~-~~~~~~lv~~~~~~G~L~vv~~~~~~~-~~~~i~vw~l~~~~-~W 288 (362)
..+.+||+.+++|+.+. + +|. .+....+++ .+|+||++++..... ....+.+++++.+. .|
T Consensus 163 ~~~~~~~v~~YDp~t~~W~~~~-~-------~p~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 163 DYFWNKNVLSYDPSTNQWRNLG-E-------NPFLGTAGSAIVH---KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred HcCccceEEEEECCCCceeECc-c-------CCCCcCCCceEEE---ECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 46899999999999864 4 664 344555663 899999999964322 12334556665554 49
Q ss_pred EEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC----------------------CeEEEEECCCCceEEcC
Q 018005 289 IEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------------PEILYYNVARRTWHWLP 346 (362)
Q Consensus 289 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yd~~~~~w~~~~ 346 (362)
+++..||..... .. .......++..++.||+.++.. ..+.+||+++++|+.++
T Consensus 232 ~~~~~m~~~r~~-~~----~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 232 NKLPPLPPPKSS-SQ----EGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred eecCCCCCCCCC-cc----ccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 999988642110 00 0011222445678899886531 14789999999999999
Q ss_pred CCCCCC
Q 018005 347 SCPSLP 352 (362)
Q Consensus 347 ~~~~~~ 352 (362)
.+|.+.
T Consensus 307 ~lp~~~ 312 (346)
T TIGR03547 307 KLPQGL 312 (346)
T ss_pred CCCCCc
Confidence 988754
No 9
>PLN02153 epithiospecifier protein
Probab=99.81 E-value=2.4e-17 Score=150.42 Aligned_cols=241 Identities=12% Similarity=0.122 Sum_probs=151.8
Q ss_pred CCCCeEeecCCc-CCCCCCceEEEecCCceEEEecCC-------CCeEEEEeCCcCceeeccCCCC-CCc-cceEEEEeC
Q 018005 84 THGTWRRLSLPY-SLLLPSAATLLSSSKGLLCFSLPS-------SSSFLVCNLVTLSSRTIDFPTY-PFD-FELLTLVST 153 (362)
Q Consensus 84 ~~~~w~~~~~~~-~~~~~~~~~~~~s~~Gll~~~~~~-------~~~~~v~NP~t~~w~~lP~~~~-~~~-~~~~~~~~~ 153 (362)
...+|..+.... ..|.++....+++.++.|++.++. .+.+++||+.+++|..++++.. ++. ...++++..
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 556788875421 134445444556667878877653 1368999999999999987642 332 222222211
Q ss_pred CCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccc-cCCCcccEEECCEEEEEecCC-----------cE
Q 018005 154 PSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILS-QSSHQEGVFYKGSLYFTTPEP-----------FS 218 (362)
Q Consensus 154 ~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~-~~~~~~~v~~~G~ly~~~~~~-----------~~ 218 (362)
.-+|+++||... ...+++||+.+++|+..+ .++....+ .+..+..+.++|++|++++.. ..
T Consensus 85 --~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 160 (341)
T PLN02153 85 --GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLT--KLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT 160 (341)
T ss_pred --CCEEEEECCCCCCCccCcEEEEECCCCEEEEec--cCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence 127899888532 247999999999999876 44210001 234566788899999998732 25
Q ss_pred EEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC--------CccceEEEEEECCCCCEEE
Q 018005 219 IVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN--------GISTTMKLWELGCGGNWIE 290 (362)
Q Consensus 219 i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~--------~~~~~i~vw~l~~~~~W~~ 290 (362)
+.+||+++++|..+..+.. .|..+..+.+++ .+|+||++++.... .....+++|++ +.++|++
T Consensus 161 v~~yd~~~~~W~~l~~~~~-----~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~-~~~~W~~ 231 (341)
T PLN02153 161 IEAYNIADGKWVQLPDPGE-----NFEKRGGAGFAV---VQGKIWVVYGFATSILPGGKSDYESNAVQFFDP-ASGKWTE 231 (341)
T ss_pred EEEEECCCCeEeeCCCCCC-----CCCCCCcceEEE---ECCeEEEEeccccccccCCccceecCceEEEEc-CCCcEEe
Confidence 8899999999998642210 223344455553 89999999875311 01234555544 2345999
Q ss_pred EecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC--------------CeEEEEECCCCceEEcC
Q 018005 291 VERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--------------PEILYYNVARRTWHWLP 346 (362)
Q Consensus 291 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~v~~yd~~~~~w~~~~ 346 (362)
+..++.. . ..+....++..++.||+.++.. +.+++||+++++|+.+.
T Consensus 232 ~~~~g~~------P---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 232 VETTGAK------P---SARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred ccccCCC------C---CCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 8754210 0 0112233455678888887631 26899999999999985
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=99.79 E-value=1.3e-17 Score=158.41 Aligned_cols=187 Identities=11% Similarity=0.045 Sum_probs=139.3
Q ss_pred ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCC--CCeEEEEeCCcCceeeccCCCCCCccceEEEEeC
Q 018005 76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS--SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVST 153 (362)
Q Consensus 76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~--~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~ 153 (362)
..+..|||..++|..++ +++.++....+++.+|.||+.++. ...+..|||.+++|..+|+++.++...+.+....
T Consensus 287 ~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g 363 (480)
T PHA02790 287 NNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINN 363 (480)
T ss_pred CeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECC
Confidence 35678999999999986 333444444566788988888763 2468899999999999999988776554443332
Q ss_pred CCceEEEEEeeecC-CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeecC
Q 018005 154 PSGYKIFMLFAKSF-PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP 232 (362)
Q Consensus 154 ~~~ykv~~~~~~~~-~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~ 232 (362)
+|+++||... ...+++||+++++|+..+ .|+. .+..+.++.++|++|++|+. ..+||+++++|+.+
T Consensus 364 ----~IYviGG~~~~~~~ve~ydp~~~~W~~~~--~m~~----~r~~~~~~~~~~~IYv~GG~---~e~ydp~~~~W~~~ 430 (480)
T PHA02790 364 ----VIYVIGGHSETDTTTEYLLPNHDQWQFGP--STYY----PHYKSCALVFGRRLFLVGRN---AEFYCESSNTWTLI 430 (480)
T ss_pred ----EEEEecCcCCCCccEEEEeCCCCEEEeCC--CCCC----ccccceEEEECCEEEEECCc---eEEecCCCCcEeEc
Confidence 8999988643 357899999999999988 6654 22445677899999999864 67899999999986
Q ss_pred CCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEE
Q 018005 233 NDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIE 290 (362)
Q Consensus 233 ~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~ 290 (362)
. | ||..+....+++ .+|+||++||.........+++|+. +.+.|+.
T Consensus 431 ~-~-------m~~~r~~~~~~v---~~~~IYviGG~~~~~~~~~ve~Yd~-~~~~W~~ 476 (480)
T PHA02790 431 D-D-------PIYPRDNPELII---VDNKLLLIGGFYRGSYIDTIEVYNN-RTYSWNI 476 (480)
T ss_pred C-C-------CCCCccccEEEE---ECCEEEEECCcCCCcccceEEEEEC-CCCeEEe
Confidence 3 5 666566666664 8999999999653333467888855 3455874
No 11
>PLN02193 nitrile-specifier protein
Probab=99.78 E-value=1.7e-16 Score=150.22 Aligned_cols=247 Identities=11% Similarity=0.051 Sum_probs=157.5
Q ss_pred eeeeeCCC----CCeEeecCCcCCCCCCceEEEecCCceEEEecCCC-------CeEEEEeCCcCceeeccCCC-CCC-c
Q 018005 78 YPLYDSTH----GTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS-------SSFLVCNLVTLSSRTIDFPT-YPF-D 144 (362)
Q Consensus 78 ~~~~d~~~----~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~-------~~~~v~NP~t~~w~~lP~~~-~~~-~ 144 (362)
++.+++.. ++|..++.....|.++....++..++.|++.++.. ..+++||+.+++|..++++. .+. .
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~ 218 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS 218 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence 34447644 78998864323344555555556667777766521 35889999999999887652 222 1
Q ss_pred cceEEEEeCCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC-----
Q 018005 145 FELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----- 216 (362)
Q Consensus 145 ~~~~~~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~----- 216 (362)
+..++++.. .-++++++|... ...+++||+.+++|+..+ .++..+. .+..+..+.+++++|++++..
T Consensus 219 ~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~--~~~~~P~-~R~~h~~~~~~~~iYv~GG~~~~~~~ 293 (470)
T PLN02193 219 CLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLT--PVEEGPT-PRSFHSMAADEENVYVFGGVSATARL 293 (470)
T ss_pred ccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCCCEEEEcC--cCCCCCC-CccceEEEEECCEEEEECCCCCCCCc
Confidence 222222211 127888887542 348999999999999887 4522111 335567788899999998742
Q ss_pred cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCC-CEEEEeccc
Q 018005 217 FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVP 295 (362)
Q Consensus 217 ~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~~p 295 (362)
..+.+||+.+++|+.+..|.. +|..+..+.+++ .+|+||++++..+. ....+.+| |... +|+++..++
T Consensus 294 ~~~~~yd~~t~~W~~~~~~~~-----~~~~R~~~~~~~---~~gkiyviGG~~g~-~~~dv~~y--D~~t~~W~~~~~~g 362 (470)
T PLN02193 294 KTLDSYNIVDKKWFHCSTPGD-----SFSIRGGAGLEV---VQGKVWVVYGFNGC-EVDDVHYY--DPVQDKWTQVETFG 362 (470)
T ss_pred ceEEEEECCCCEEEeCCCCCC-----CCCCCCCcEEEE---ECCcEEEEECCCCC-ccCceEEE--ECCCCEEEEeccCC
Confidence 458999999999998754311 334444555653 89999999985422 12444444 5444 499997653
Q ss_pred HHHHHHhhhccccCCccEEEEeeCCEEEEEeecC--------------CeEEEEECCCCceEEcCCCC
Q 018005 296 EMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--------------PEILYYNVARRTWHWLPSCP 349 (362)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~v~~yd~~~~~w~~~~~~~ 349 (362)
... ..+....++..++.||+.++.. +.+++||+.+++|+.++.++
T Consensus 363 ~~P---------~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 363 VRP---------SERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred CCC---------CCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 111 0112234455678888886532 24899999999999997654
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.76 E-value=1.3e-16 Score=147.27 Aligned_cols=226 Identities=16% Similarity=0.210 Sum_probs=145.2
Q ss_pred EEecCCceEEEecC-CCCeEEEEeCC--cCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecC---------CCeE
Q 018005 105 LLSSSKGLLCFSLP-SSSSFLVCNLV--TLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF---------PNYA 171 (362)
Q Consensus 105 ~~~s~~Gll~~~~~-~~~~~~v~NP~--t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~---------~~~~ 171 (362)
..++.++-|++.++ ....++++|+. +++|..+++++. ++.....+.... +|+++||... ...+
T Consensus 33 ~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~----~IYV~GG~~~~~~~~~~~~~~~v 108 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDG----KLYVFGGIGKTNSEGSPQVFDDV 108 (376)
T ss_pred eEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECC----EEEEEcCCCCCCCCCceeEcccE
Confidence 45556777777554 34567888876 578999998764 443333332222 7888887532 2479
Q ss_pred EEEeCCCCcccccccCCC-CccccccCCCcccEE-ECCEEEEEecCC---------------------------------
Q 018005 172 FVYDSTDQSWSKFDIDGF-PSMILSQSSHQEGVF-YKGSLYFTTPEP--------------------------------- 216 (362)
Q Consensus 172 ~vy~s~~~~W~~~~~~~~-p~~~~~~~~~~~~v~-~~G~ly~~~~~~--------------------------------- 216 (362)
++||+.+++|+..+ .. |. .+..+..+. .+|+||++++..
T Consensus 109 ~~YD~~~n~W~~~~--~~~p~----~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~ 182 (376)
T PRK14131 109 YKYDPKTNSWQKLD--TRSPV----GLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKP 182 (376)
T ss_pred EEEeCCCCEEEeCC--CCCCC----cccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCCh
Confidence 99999999999987 32 22 112344444 799999998742
Q ss_pred ------cEEEEEEcCCCeeecCCCCCcccccCCCC-cccccceeecccCCCeEEEEEEeecCC-ccceEEEEEECCCC-C
Q 018005 217 ------FSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIGGVGRNG-ISTTMKLWELGCGG-N 287 (362)
Q Consensus 217 ------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~-~~~~~~lv~~~~~~G~L~vv~~~~~~~-~~~~i~vw~l~~~~-~ 287 (362)
..+.+||+.+++|+.+. + +|. .+..+.++. .+++||++++....+ ....+..++++... .
T Consensus 183 ~~~~~~~~v~~YD~~t~~W~~~~-~-------~p~~~~~~~a~v~---~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
T PRK14131 183 EDYFFNKEVLSYDPSTNQWKNAG-E-------SPFLGTAGSAVVI---KGNKLWLINGEIKPGLRTDAVKQGKFTGNNLK 251 (376)
T ss_pred hhcCcCceEEEEECCCCeeeECC-c-------CCCCCCCcceEEE---ECCEEEEEeeeECCCcCChhheEEEecCCCcc
Confidence 35899999999999864 4 554 444556663 899999999964322 12233444555444 4
Q ss_pred EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC----------------------CeEEEEECCCCceEEc
Q 018005 288 WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------------PEILYYNVARRTWHWL 345 (362)
Q Consensus 288 W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yd~~~~~w~~~ 345 (362)
|+++..||........ .......++..++.||+.++.. ..+.+||+++++|+.+
T Consensus 252 W~~~~~~p~~~~~~~~----~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 252 WQKLPDLPPAPGGSSQ----EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV 327 (376)
T ss_pred eeecCCCCCCCcCCcC----CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence 9999988743210000 0001122334577888876531 1357899999999999
Q ss_pred CCCCCCCCCC
Q 018005 346 PSCPSLPHKW 355 (362)
Q Consensus 346 ~~~~~~~~~~ 355 (362)
+.+|.+..-.
T Consensus 328 ~~lp~~r~~~ 337 (376)
T PRK14131 328 GELPQGLAYG 337 (376)
T ss_pred CcCCCCccce
Confidence 9888765433
No 13
>PLN02153 epithiospecifier protein
Probab=99.73 E-value=1.7e-15 Score=138.22 Aligned_cols=203 Identities=11% Similarity=0.108 Sum_probs=133.3
Q ss_pred ceeeeeeCCCCCeEeecCCcCCCCC-CceEEEecCCceEEEecCC-----CCeEEEEeCCcCceeeccCC-----CCCCc
Q 018005 76 DQYPLYDSTHGTWRRLSLPYSLLLP-SAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFP-----TYPFD 144 (362)
Q Consensus 76 ~~~~~~d~~~~~w~~~~~~~~~~~~-~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~w~~lP~~-----~~~~~ 144 (362)
..++.||+..++|..++.....|.. .....+++.++.|++.++. ...+++|||.|++|..++++ +.++.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 3578899999999987532112221 1234456677877777652 14789999999999999876 33343
Q ss_pred cceEEEEeCCCceEEEEEeeecC---------CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC
Q 018005 145 FELLTLVSTPSGYKIFMLFAKSF---------PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE 215 (362)
Q Consensus 145 ~~~~~~~~~~~~ykv~~~~~~~~---------~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~ 215 (362)
.+.++.... +++++||... ...+++||+++++|+..+ .+.. ....+..+..+.++|++|++++.
T Consensus 130 ~~~~~~~~~----~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~--~~~~-~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 130 FHSMASDEN----HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP--DPGE-NFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred eeEEEEECC----EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC--CCCC-CCCCCCcceEEEECCeEEEEecc
Confidence 333332222 7888888531 136899999999999887 4332 11233456678899999998652
Q ss_pred -------------CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCC-------ccc
Q 018005 216 -------------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG-------IST 275 (362)
Q Consensus 216 -------------~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~-------~~~ 275 (362)
...+.+||+.+++|+.+..... +|..+..+..++ .+++||++||..... ...
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~-----~P~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~ 274 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA-----KPSARSVFAHAV---VGKYIIIFGGEVWPDLKGHLGPGTL 274 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEeccccCC-----CCCCcceeeeEE---ECCEEEEECcccCCccccccccccc
Confidence 1468999999999998742110 455555555553 899999999953110 111
Q ss_pred eEEEEEECCCCC-EEEEec
Q 018005 276 TMKLWELGCGGN-WIEVER 293 (362)
Q Consensus 276 ~i~vw~l~~~~~-W~~v~~ 293 (362)
.-++|.+|.... |+++..
T Consensus 275 ~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 275 SNEGYALDTETLVWEKLGE 293 (341)
T ss_pred cccEEEEEcCccEEEeccC
Confidence 236777776655 998864
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.73 E-value=1.3e-15 Score=137.90 Aligned_cols=199 Identities=14% Similarity=0.150 Sum_probs=128.9
Q ss_pred eEEEEe-CCcC-ceeeccCCCCCCccceEEEEeCCCceEEEEEeeecC---CCeEEEEeCCCCcc----cccccCCCCcc
Q 018005 122 SFLVCN-LVTL-SSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSW----SKFDIDGFPSM 192 (362)
Q Consensus 122 ~~~v~N-P~t~-~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W----~~~~~~~~p~~ 192 (362)
.+++++ +..+ +|..+++++.++...+.+.... +|+++||... ...++.||..++.| +..+ .+|.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~----~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~--~lp~- 112 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVEN----GIYYIGGSNSSERFSSVYRITLDESKEELICETIG--NLPF- 112 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECC----EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC--CCCc-
Confidence 456664 4433 7999998887765444333222 7888887542 24899999999988 4555 5554
Q ss_pred ccccCCCcccEEECCEEEEEecC-----CcEEEEEEcCCCeeecCCCCCcccccCCCC-cccccceeecccCCCeEEEEE
Q 018005 193 ILSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIG 266 (362)
Q Consensus 193 ~~~~~~~~~~v~~~G~ly~~~~~-----~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~-~~~~~~lv~~~~~~G~L~vv~ 266 (362)
.+..+.+++++|++|++++. ...+.+||+.+++|+.+. + +|. .+..+.+++ .+|+||++|
T Consensus 113 ---~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~-------~p~~~r~~~~~~~---~~~~iYv~G 178 (323)
T TIGR03548 113 ---TFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP-D-------FPGEPRVQPVCVK---LQNELYVFG 178 (323)
T ss_pred ---CccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC-C-------CCCCCCCcceEEE---ECCEEEEEc
Confidence 22456678889999999874 246899999999999864 3 443 334444543 899999999
Q ss_pred EeecCCccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC----------------
Q 018005 267 GVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW---------------- 329 (362)
Q Consensus 267 ~~~~~~~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------------- 329 (362)
+.... ....+ +.+|... +|+++..|+... .+.. ......++..++.||+.++..
T Consensus 179 G~~~~-~~~~~--~~yd~~~~~W~~~~~~~~~~----~p~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 249 (323)
T TIGR03548 179 GGSNI-AYTDG--YKYSPKKNQWQKVADPTTDS----EPIS--LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKD 249 (323)
T ss_pred CCCCc-cccce--EEEecCCCeeEECCCCCCCC----Ccee--ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccc
Confidence 85321 11234 4445444 599988763210 0000 001112234467788876532
Q ss_pred ---------------------CeEEEEECCCCceEEcCCCCC
Q 018005 330 ---------------------PEILYYNVARRTWHWLPSCPS 350 (362)
Q Consensus 330 ---------------------~~v~~yd~~~~~w~~~~~~~~ 350 (362)
+.+++||+++++|+.++.+|.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 291 (323)
T TIGR03548 250 ESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF 291 (323)
T ss_pred hhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc
Confidence 469999999999999988774
No 15
>PHA03098 kelch-like protein; Provisional
Probab=99.72 E-value=4.3e-16 Score=150.82 Aligned_cols=195 Identities=13% Similarity=0.176 Sum_probs=140.8
Q ss_pred eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCC-----CeEEEEeCCcCceeeccCCCCCCccceEEEE
Q 018005 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS-----SSFLVCNLVTLSSRTIDFPTYPFDFELLTLV 151 (362)
Q Consensus 77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~-----~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~ 151 (362)
.+..||+..++|..++ +++.++....+++.+|-|++.++.. ..+.+|||.|++|..+++++.++...+.+..
T Consensus 312 ~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~ 388 (534)
T PHA03098 312 SVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV 388 (534)
T ss_pred cEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE
Confidence 5778999999998875 3333444455666788777776632 4688999999999999999877765544433
Q ss_pred eCCCceEEEEEeeecC----CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC--------cEE
Q 018005 152 STPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP--------FSI 219 (362)
Q Consensus 152 ~~~~~ykv~~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~--------~~i 219 (362)
.. +|+++||... ...+++||+.+++|+..+ .+|. .+..+.++.++|++|.+++.. ..+
T Consensus 389 ~~----~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 458 (534)
T PHA03098 389 NN----LIYVIGGISKNDELLKTVECFSLNTNKWSKGS--PLPI----SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIV 458 (534)
T ss_pred CC----EEEEECCcCCCCcccceEEEEeCCCCeeeecC--CCCc----cccCceEEEECCEEEEECCccCCCCCcccceE
Confidence 22 8888888432 248999999999999988 6665 234566788999999998742 248
Q ss_pred EEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccH
Q 018005 220 VRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPE 296 (362)
Q Consensus 220 ~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~ 296 (362)
.+||+.+++|+.+. + +|..+....+++ .+|+||++||.........+++|.. +.+.|+.+..+|.
T Consensus 459 ~~yd~~~~~W~~~~-~-------~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~v~~yd~-~~~~W~~~~~~p~ 523 (534)
T PHA03098 459 ESYNPVTNKWTELS-S-------LNFPRINASLCI---FNNKIYVVGGDKYEYYINEIEVYDD-KTNTWTLFCKFPK 523 (534)
T ss_pred EEecCCCCceeeCC-C-------CCcccccceEEE---ECCEEEEEcCCcCCcccceeEEEeC-CCCEEEecCCCcc
Confidence 99999999999864 3 454444555553 8999999998654333455666644 2345999988763
No 16
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.69 E-value=3.5e-15 Score=133.11 Aligned_cols=288 Identities=14% Similarity=0.114 Sum_probs=154.4
Q ss_pred hhcCCCHHHHHHHHccCC-hhhhhhhhccchhhhhhccCccccccccccCCCcceEEEEecC-CCCceeeeeeCCCC---
Q 018005 12 IWSRLPEDLLDHVLSFLP-PKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHP-QCYDQYPLYDSTHG--- 86 (362)
Q Consensus 12 ~~~~LP~dll~~IL~rLp-~~~l~~~r~VcK~W~~~i~~~~F~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~d~~~~--- 86 (362)
.|++||+|||..|..||| ..++.|+|+|||+||+.+.... +.. ..++.++.++.... ..+ ....|+...
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 76 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KKN-PFRTRPLILFNPINPSET--LTDDRSYISRPG 76 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---ccC-CcccccccccCcccCCCC--cccccccccccc
Confidence 599999999999999996 7899999999999999886421 000 00111222221100 000 000111000
Q ss_pred ------CeEeecCCcCCCCCCceEEEecCCceEEEecC--CCCeEEEEeCCcCceeeccCCCCC---Cc-----c-ceE-
Q 018005 87 ------TWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP--SSSSFLVCNLVTLSSRTIDFPTYP---FD-----F-ELL- 148 (362)
Q Consensus 87 ------~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~--~~~~~~v~NP~t~~w~~lP~~~~~---~~-----~-~~~- 148 (362)
...+++++ -++..|+|..... ..+.+.+.||+++.-..+|+...+ .. . +.+
T Consensus 77 ~~ls~~~~~r~~~~-----------~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~ 145 (373)
T PLN03215 77 AFLSRAAFFRVTLS-----------SSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL 145 (373)
T ss_pred ceeeeeEEEEeecC-----------CCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence 01111100 0245676554432 346888999999996666642111 00 0 000
Q ss_pred EEE-----------------e--CCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEE
Q 018005 149 TLV-----------------S--TPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSL 209 (362)
Q Consensus 149 ~~~-----------------~--~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~l 209 (362)
+.. . +...|-|++++.. ..+..++ .+.|+.++ .... ...+.++++|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~---g~l~~w~--~~~Wt~l~--~~~~------~~~DIi~~kGkf 212 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRD---GKINYWD--GNVLKALK--QMGY------HFSDIIVHKGQT 212 (373)
T ss_pred ecccccccccceeEEEEEEeecCCCcceEEEEEeec---CcEeeec--CCeeeEcc--CCCc------eeeEEEEECCEE
Confidence 000 0 0011223333321 2333343 58898886 3222 457789999999
Q ss_pred EEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCc--ccccceeecccCCCeEEEEEEeecC------------Cccc
Q 018005 210 YFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHE--LTFFRLVNDGEESNKLYLIGGVGRN------------GIST 275 (362)
Q Consensus 210 y~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~--~~~~~lv~~~~~~G~L~vv~~~~~~------------~~~~ 275 (362)
|++...+ .+.++|.+-+ -+.+..+- ..-+-.+ .....+| | +.|+|++|...... ..+.
T Consensus 213 YAvD~~G-~l~~i~~~l~-i~~v~~~i---~~~~~~g~~~~~~yLV-E--s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~ 284 (373)
T PLN03215 213 YALDSIG-IVYWINSDLE-FSRFGTSL---DENITDGCWTGDRRFV-E--CCGELYIVERLPKESTWKRKADGFEYSRTV 284 (373)
T ss_pred EEEcCCC-eEEEEecCCc-eeeeccee---cccccCCcccCceeEE-E--ECCEEEEEEEEccCccccccccccccccee
Confidence 9997654 5777774321 11111110 0001111 1235677 6 89999999885321 1235
Q ss_pred eEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEE------EeeCCEEEEEeecCCeEEEEECCCCceEEc
Q 018005 276 TMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYC------FWHQGMICVCCYTWPEILYYNVARRTWHWL 345 (362)
Q Consensus 276 ~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~ 345 (362)
.++||++|.... |+++.+++.... +++ ....+.+ -..+|.||+... ....+||++.++-..+
T Consensus 285 ~f~VfklD~~~~~WveV~sLgd~aL--FlG----~~~s~sv~a~e~pG~k~NcIYFtdd--~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 285 GFKVYKFDDELAKWMEVKTLGDNAF--VMA----TDTCFSVLAHEFYGCLPNSIYFTED--TMPKVFKLDNGNGSSI 353 (373)
T ss_pred EEEEEEEcCCCCcEEEecccCCeEE--EEE----CCccEEEecCCCCCccCCEEEEECC--CcceEEECCCCCccce
Confidence 789999986654 999999975421 111 0011111 124689999863 3467999999975444
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.69 E-value=1.5e-14 Score=132.43 Aligned_cols=219 Identities=13% Similarity=0.150 Sum_probs=140.3
Q ss_pred ceeeeeeC--CCCCeEeecCCcCCC-CCCceEEEecCCceEEEecCCC-----------CeEEEEeCCcCceeeccCCCC
Q 018005 76 DQYPLYDS--THGTWRRLSLPYSLL-LPSAATLLSSSKGLLCFSLPSS-----------SSFLVCNLVTLSSRTIDFPTY 141 (362)
Q Consensus 76 ~~~~~~d~--~~~~w~~~~~~~~~~-~~~~~~~~~s~~Gll~~~~~~~-----------~~~~v~NP~t~~w~~lP~~~~ 141 (362)
..++.||+ ..++|..++ ++| ..+....+++.+|-|++.++.. ..+++|||.+++|..++.+ .
T Consensus 29 ~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~-~ 104 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR-S 104 (346)
T ss_pred CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC-C
Confidence 45677885 567899886 333 2344455677888888877531 3588999999999999742 2
Q ss_pred CCccceEEEEeCCCceEEEEEeeecC-------------------------------------CCeEEEEeCCCCccccc
Q 018005 142 PFDFELLTLVSTPSGYKIFMLFAKSF-------------------------------------PNYAFVYDSTDQSWSKF 184 (362)
Q Consensus 142 ~~~~~~~~~~~~~~~ykv~~~~~~~~-------------------------------------~~~~~vy~s~~~~W~~~ 184 (362)
++.+.+.+... ...-+|+++||... ...+++||+.+++|+..
T Consensus 105 p~~~~~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~ 183 (346)
T TIGR03547 105 PVGLLGASGFS-LHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL 183 (346)
T ss_pred CCcccceeEEE-EeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC
Confidence 33332221110 01228899887531 15799999999999999
Q ss_pred ccCCCCccccccCCCcccEEECCEEEEEecCC------cEEEEEEc--CCCeeecCCCCCcccccCCCCcc-------cc
Q 018005 185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FSIVRFDL--ENGIWETPNDANDHMTMMLPHEL-------TF 249 (362)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~------~~i~~~D~--~~~~w~~~~~p~~~~~~~~p~~~-------~~ 249 (362)
+ .+|.. .+..+..+.++|+||++++.. ..+..||+ ++++|+.+. + ||..+ ..
T Consensus 184 ~--~~p~~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~-~-------m~~~r~~~~~~~~~ 250 (346)
T TIGR03547 184 G--ENPFL---GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP-P-------LPPPKSSSQEGLAG 250 (346)
T ss_pred c--cCCCC---cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC-C-------CCCCCCCccccccE
Confidence 8 66631 124456678899999998741 22445654 667999863 4 44321 12
Q ss_pred cceeecccCCCeEEEEEEeecCC-----------------ccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCcc
Q 018005 250 FRLVNDGEESNKLYLIGGVGRNG-----------------ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDH 312 (362)
Q Consensus 250 ~~lv~~~~~~G~L~vv~~~~~~~-----------------~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~ 312 (362)
+..+ . .+|+||++|+..... ....+++|..+ .++|+.+..||... ..
T Consensus 251 ~~a~-~--~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~-~~~W~~~~~lp~~~------------~~ 314 (346)
T TIGR03547 251 AFAG-I--SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD-NGKWSKVGKLPQGL------------AY 314 (346)
T ss_pred Eeee-E--ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec-CCcccccCCCCCCc------------ee
Confidence 2234 2 899999999964110 01368899884 55699999887321 12
Q ss_pred EEEEeeCCEEEEEeec
Q 018005 313 VYCFWHQGMICVCCYT 328 (362)
Q Consensus 313 ~~~~~~~~~i~~~~~~ 328 (362)
..++..+|.||+.++.
T Consensus 315 ~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 315 GVSVSWNNGVLLIGGE 330 (346)
T ss_pred eEEEEcCCEEEEEecc
Confidence 2344668889998754
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.68 E-value=4e-14 Score=130.77 Aligned_cols=234 Identities=14% Similarity=0.129 Sum_probs=149.9
Q ss_pred ceeeeeeCC--CCCeEeecCCcCCC-CCCceEEEecCCceEEEecCCC-----------CeEEEEeCCcCceeeccCCCC
Q 018005 76 DQYPLYDST--HGTWRRLSLPYSLL-LPSAATLLSSSKGLLCFSLPSS-----------SSFLVCNLVTLSSRTIDFPTY 141 (362)
Q Consensus 76 ~~~~~~d~~--~~~w~~~~~~~~~~-~~~~~~~~~s~~Gll~~~~~~~-----------~~~~v~NP~t~~w~~lP~~~~ 141 (362)
..++.||.. .++|..++ ++| .++....+++.+|-|++.++.. ..+++|||.+++|..++++ .
T Consensus 50 ~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~ 125 (376)
T PRK14131 50 TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-S 125 (376)
T ss_pred CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-C
Confidence 346778875 46898875 222 1344445667788888876521 3588999999999999853 2
Q ss_pred CCccceE-EEEeCCCceEEEEEeeecC-------------------------------------CCeEEEEeCCCCcccc
Q 018005 142 PFDFELL-TLVSTPSGYKIFMLFAKSF-------------------------------------PNYAFVYDSTDQSWSK 183 (362)
Q Consensus 142 ~~~~~~~-~~~~~~~~ykv~~~~~~~~-------------------------------------~~~~~vy~s~~~~W~~ 183 (362)
++...+. +.... .-+|+++||... ...+++||+.++.|+.
T Consensus 126 p~~~~~~~~~~~~--~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~ 203 (376)
T PRK14131 126 PVGLAGHVAVSLH--NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKN 203 (376)
T ss_pred CCcccceEEEEee--CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeE
Confidence 2222222 22101 228899888531 2479999999999998
Q ss_pred cccCCCCccccccCCCcccEEECCEEEEEecCC------cE--EEEEEcCCCeeecCCCCCcccccCCCCccc-------
Q 018005 184 FDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FS--IVRFDLENGIWETPNDANDHMTMMLPHELT------- 248 (362)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~------~~--i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~------- 248 (362)
.+ .+|. ..+..+..+.++++||++++.. .. ...||+++++|+.+. + +|..+.
T Consensus 204 ~~--~~p~---~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~-------~p~~~~~~~~~~~ 270 (376)
T PRK14131 204 AG--ESPF---LGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP-D-------LPPAPGGSSQEGV 270 (376)
T ss_pred CC--cCCC---CCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC-C-------CCCCCcCCcCCcc
Confidence 87 5653 1224556778899999998731 11 345678899999864 3 443221
Q ss_pred -ccceeecccCCCeEEEEEEeecCC-----------------ccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCC
Q 018005 249 -FFRLVNDGEESNKLYLIGGVGRNG-----------------ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNY 310 (362)
Q Consensus 249 -~~~lv~~~~~~G~L~vv~~~~~~~-----------------~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~ 310 (362)
....+ . .+|+||++|+..... ....+++|.++ .+.|+.+..||...
T Consensus 271 ~~~~a~-~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~-~~~W~~~~~lp~~r------------ 334 (376)
T PRK14131 271 AGAFAG-Y--SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV-NGKWQKVGELPQGL------------ 334 (376)
T ss_pred ceEece-e--ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec-CCcccccCcCCCCc------------
Confidence 11123 2 799999999854211 01246788774 45699998887422
Q ss_pred ccEEEEeeCCEEEEEeecC------CeEEEEECCCCceEE
Q 018005 311 DHVYCFWHQGMICVCCYTW------PEILYYNVARRTWHW 344 (362)
Q Consensus 311 ~~~~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~ 344 (362)
....++..++.||+.++.. ..+.+|+++++++..
T Consensus 335 ~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 335 AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 1233556778899987642 258999999988764
No 19
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.65 E-value=5e-14 Score=127.65 Aligned_cols=221 Identities=14% Similarity=0.170 Sum_probs=138.0
Q ss_pred eeeee-CCCC-CeEeecCCcCCCCCCceEEEecCCceEEEecCC-----CCeEEEEeCCcCce----eeccCCCCCCccc
Q 018005 78 YPLYD-STHG-TWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSS----RTIDFPTYPFDFE 146 (362)
Q Consensus 78 ~~~~d-~~~~-~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~w----~~lP~~~~~~~~~ 146 (362)
++.++ +..+ +|..++ ++|.++.....++.++-|++.++. ...++.+|+.+++| ..+|+++.++...
T Consensus 41 v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~ 117 (323)
T TIGR03548 41 IYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG 117 (323)
T ss_pred eEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc
Confidence 44453 3323 687775 333344333445556766666552 24788999999998 7788887776554
Q ss_pred eEEEEeCCCceEEEEEeeec---CCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC----cEE
Q 018005 147 LLTLVSTPSGYKIFMLFAKS---FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----FSI 219 (362)
Q Consensus 147 ~~~~~~~~~~ykv~~~~~~~---~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~----~~i 219 (362)
+.++... +|++++|.. ....+++||+.+++|+..+ .+|.. .+..+..+.++|++|++++.. ..+
T Consensus 118 ~~~~~~~----~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~---~r~~~~~~~~~~~iYv~GG~~~~~~~~~ 188 (323)
T TIGR03548 118 SACYKDG----TLYVGGGNRNGKPSNKSYLFNLETQEWFELP--DFPGE---PRVQPVCVKLQNELYVFGGGSNIAYTDG 188 (323)
T ss_pred eEEEECC----EEEEEeCcCCCccCceEEEEcCCCCCeeECC--CCCCC---CCCcceEEEECCEEEEEcCCCCccccce
Confidence 4443332 888888853 2348999999999999987 66531 234455678899999998742 246
Q ss_pred EEEEcCCCeeecCCCCCcccccCCCCccc-ccceeecccCCCeEEEEEEeecCC--------------------------
Q 018005 220 VRFDLENGIWETPNDANDHMTMMLPHELT-FFRLVNDGEESNKLYLIGGVGRNG-------------------------- 272 (362)
Q Consensus 220 ~~~D~~~~~w~~~~~p~~~~~~~~p~~~~-~~~lv~~~~~~G~L~vv~~~~~~~-------------------------- 272 (362)
.+||+++++|+.+.... ....|.... ...++. .+|+||++|+.....
T Consensus 189 ~~yd~~~~~W~~~~~~~---~~~~p~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (323)
T TIGR03548 189 YKYSPKKNQWQKVADPT---TDSEPISLLGAASIKI---NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLK 262 (323)
T ss_pred EEEecCCCeeEECCCCC---CCCCceeccceeEEEE---CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCC
Confidence 89999999999864210 000233322 233442 689999999964211
Q ss_pred ------ccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec
Q 018005 273 ------ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT 328 (362)
Q Consensus 273 ------~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 328 (362)
....+++|+. ..++|+.+..+|.. . .....++..++.||+.++.
T Consensus 263 ~~~~~~~~~~v~~yd~-~~~~W~~~~~~p~~-----~------r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 263 PPEWYNWNRKILIYNV-RTGKWKSIGNSPFF-----A------RCGAALLLTGNNIFSINGE 312 (323)
T ss_pred CccccCcCceEEEEEC-CCCeeeEccccccc-----c------cCchheEEECCEEEEEecc
Confidence 0135666655 24459999877521 1 1122345667889988753
No 20
>PLN02193 nitrile-specifier protein
Probab=99.63 E-value=7.4e-14 Score=132.39 Aligned_cols=203 Identities=14% Similarity=0.167 Sum_probs=129.1
Q ss_pred eEEEEeCCc----CceeeccCC---CCCCccceEEEEeCCCceEEEEEeeecC-----CCeEEEEeCCCCcccccccCCC
Q 018005 122 SFLVCNLVT----LSSRTIDFP---TYPFDFELLTLVSTPSGYKIFMLFAKSF-----PNYAFVYDSTDQSWSKFDIDGF 189 (362)
Q Consensus 122 ~~~v~NP~t----~~w~~lP~~---~~~~~~~~~~~~~~~~~ykv~~~~~~~~-----~~~~~vy~s~~~~W~~~~~~~~ 189 (362)
.+++++|.+ ++|..++++ |.+|..+..+.... +|++++|... ...+++||+++++|+..+ .+
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~----~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~--~~ 211 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGN----KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISP--AT 211 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECC----EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCC--CC
Confidence 467778866 789998864 44454444433322 7888887531 136999999999999765 22
Q ss_pred CccccccCCCcccEEECCEEEEEecCC-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEE
Q 018005 190 PSMILSQSSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYL 264 (362)
Q Consensus 190 p~~~~~~~~~~~~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~v 264 (362)
...+...+..+..+.+++++|++++.. ..+.+||+.+++|+.+. |.. -.|..+..+.+++ .+++||+
T Consensus 212 g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~-~~~----~~P~~R~~h~~~~---~~~~iYv 283 (470)
T PLN02193 212 GDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLT-PVE----EGPTPRSFHSMAA---DEENVYV 283 (470)
T ss_pred CCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcC-cCC----CCCCCccceEEEE---ECCEEEE
Confidence 110111123456788899999998742 46899999999999864 300 0255555566664 8999999
Q ss_pred EEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC----CeEEEEECCCC
Q 018005 265 IGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----PEILYYNVARR 340 (362)
Q Consensus 265 v~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~v~~yd~~~~ 340 (362)
+++.........+++|++ ..++|+.+..... . . .......++..++.||+..+.. ..+.+||++++
T Consensus 284 ~GG~~~~~~~~~~~~yd~-~t~~W~~~~~~~~-~----~----~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 284 FGGVSATARLKTLDSYNI-VDKKWFHCSTPGD-S----F----SIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred ECCCCCCCCcceEEEEEC-CCCEEEeCCCCCC-C----C----CCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCC
Confidence 999754333345555544 2345998764210 0 0 0111223334567788765432 46999999999
Q ss_pred ceEEcCCC
Q 018005 341 TWHWLPSC 348 (362)
Q Consensus 341 ~w~~~~~~ 348 (362)
+|+.++.+
T Consensus 354 ~W~~~~~~ 361 (470)
T PLN02193 354 KWTQVETF 361 (470)
T ss_pred EEEEeccC
Confidence 99999765
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.49 E-value=4.3e-12 Score=105.40 Aligned_cols=229 Identities=11% Similarity=0.131 Sum_probs=151.0
Q ss_pred ceeeeeeCCCCCeEeecCC-------cC---CCCCCceEEEecCCceEEEecCC------CCeEEEEeCCcCceeeccCC
Q 018005 76 DQYPLYDSTHGTWRRLSLP-------YS---LLLPSAATLLSSSKGLLCFSLPS------SSSFLVCNLVTLSSRTIDFP 139 (362)
Q Consensus 76 ~~~~~~d~~~~~w~~~~~~-------~~---~~~~~~~~~~~s~~Gll~~~~~~------~~~~~v~NP~t~~w~~lP~~ 139 (362)
..+++++...-+|.+++.. .+ .|..+....+....+-+++-++. .+.++.++|.|.+|.+.-.-
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~ 123 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVE 123 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecccccccccccee
Confidence 3577888888899887631 01 12223334445556666665542 24689999999999864321
Q ss_pred ---CCCCccceEEEEeCCCceEEEEEeeec-----CCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEE
Q 018005 140 ---TYPFDFELLTLVSTPSGYKIFMLFAKS-----FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYF 211 (362)
Q Consensus 140 ---~~~~~~~~~~~~~~~~~ykv~~~~~~~-----~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~ 211 (362)
|-.+..+..++-.+ ..+..|+.. .+..++++|..|.+|+...+++.|+ .+ +..+.++.++|.+|.
T Consensus 124 G~vPgaRDGHsAcV~gn----~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp-rw--RDFH~a~~~~~~MYi 196 (392)
T KOG4693|consen 124 GFVPGARDGHSACVWGN----QMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP-RW--RDFHTASVIDGMMYI 196 (392)
T ss_pred eecCCccCCceeeEECc----EEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc-hh--hhhhhhhhccceEEE
Confidence 22222222222222 344455432 3568999999999999998666666 23 356778889999999
Q ss_pred EecCC--------------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceE
Q 018005 212 TTPEP--------------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM 277 (362)
Q Consensus 212 ~~~~~--------------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i 277 (362)
.+++. ..|+++|++++.|...+ + ..+.|.+++.++..+ ++|++|++|++.+.....--
T Consensus 197 FGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p-~----~~~~P~GRRSHS~fv---Yng~~Y~FGGYng~ln~Hfn 268 (392)
T KOG4693|consen 197 FGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTP-E----NTMKPGGRRSHSTFV---YNGKMYMFGGYNGTLNVHFN 268 (392)
T ss_pred eccccccCCCccchhhhhcceeEEEeccccccccCC-C----CCcCCCcccccceEE---EcceEEEecccchhhhhhhc
Confidence 98742 46999999999998742 1 123788888888774 99999999998754344556
Q ss_pred EEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec
Q 018005 278 KLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT 328 (362)
Q Consensus 278 ~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 328 (362)
++|.+|+..+ |..+..-.... ..+..-.++..++.+|+.++.
T Consensus 269 dLy~FdP~t~~W~~I~~~Gk~P---------~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 269 DLYCFDPKTSMWSVISVRGKYP---------SARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred ceeecccccchheeeeccCCCC---------CcccceeEEEECCEEEEecCC
Confidence 8999988776 99986542111 122334556678888988754
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.25 E-value=3.5e-10 Score=94.20 Aligned_cols=201 Identities=14% Similarity=0.228 Sum_probs=132.0
Q ss_pred CeEEEEeCCcCceeeccCCC------C-----CCccceEEEEeCCCceEEEEEeeecCC----CeEEEEeCCCCcccccc
Q 018005 121 SSFLVCNLVTLSSRTIDFPT------Y-----PFDFELLTLVSTPSGYKIFMLFAKSFP----NYAFVYDSTDQSWSKFD 185 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~------~-----~~~~~~~~~~~~~~~ykv~~~~~~~~~----~~~~vy~s~~~~W~~~~ 185 (362)
..+.++|..+-+|.++|+-- . +..+.+...+.- .-++++.|+.+.. +.++.||++++.|....
T Consensus 44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y--~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~ 121 (392)
T KOG4693|consen 44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY--QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE 121 (392)
T ss_pred ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEE--cceEEEEcCccCcccccceeeeeccccccccccc
Confidence 47999999999999999821 1 123333333311 1278888886542 37899999999998876
Q ss_pred cCC-CCccccccCCCcccEEECCEEEEEecCC-------cEEEEEEcCCCeeecCCCCCcccccCCCCc-ccccceeecc
Q 018005 186 IDG-FPSMILSQSSHQEGVFYKGSLYFTTPEP-------FSIVRFDLENGIWETPNDANDHMTMMLPHE-LTFFRLVNDG 256 (362)
Q Consensus 186 ~~~-~p~~~~~~~~~~~~v~~~G~ly~~~~~~-------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~-~~~~~lv~~~ 256 (362)
.++ +|. .+..+.++++++.+|..++-. ..+.++|+++.+|+.+..-+ -|.. +..+.-+ +
T Consensus 122 v~G~vPg----aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg------~PprwRDFH~a~-~- 189 (392)
T KOG4693|consen 122 VEGFVPG----ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKG------DPPRWRDFHTAS-V- 189 (392)
T ss_pred eeeecCC----ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccC------CCchhhhhhhhh-h-
Confidence 322 222 346778888899999988631 35789999999999986554 3443 3444444 3
Q ss_pred cCCCeEEEEEEeecCC---------ccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEee
Q 018005 257 EESNKLYLIGGVGRNG---------ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY 327 (362)
Q Consensus 257 ~~~G~L~vv~~~~~~~---------~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 327 (362)
.+|..|++|+..+.. ...+|.+.++ ..+.|.+-..-+ + .. ..+.....++-++.+|+.++
T Consensus 190 -~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~-~T~aW~r~p~~~--~----~P---~GRRSHS~fvYng~~Y~FGG 258 (392)
T KOG4693|consen 190 -IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL-ATGAWTRTPENT--M----KP---GGRRSHSTFVYNGKMYMFGG 258 (392)
T ss_pred -ccceEEEeccccccCCCccchhhhhcceeEEEec-cccccccCCCCC--c----CC---CcccccceEEEcceEEEecc
Confidence 899999999965321 2345555544 234598653321 0 00 12233445566778888876
Q ss_pred cCC-------eEEEEECCCCceEEcC
Q 018005 328 TWP-------EILYYNVARRTWHWLP 346 (362)
Q Consensus 328 ~~~-------~v~~yd~~~~~w~~~~ 346 (362)
+.+ .+..||+++..|..|.
T Consensus 259 Yng~ln~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 259 YNGTLNVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred cchhhhhhhcceeecccccchheeee
Confidence 533 4899999999999983
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.02 E-value=2.8e-08 Score=94.39 Aligned_cols=204 Identities=19% Similarity=0.175 Sum_probs=138.0
Q ss_pred eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCC------CeEEEEeCCcCceeeccCCCC-C--Cccce
Q 018005 77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTY-P--FDFEL 147 (362)
Q Consensus 77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~w~~lP~~~~-~--~~~~~ 147 (362)
.++++|..+..|.....-...|.++....+++.+..|++.++.. ..+..+|+.|++|..+.+... + +..+.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 37888998888876543223334455556666667666666543 389999999999999976544 3 33333
Q ss_pred EEEEeCCCceEEEEEeeecC----CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC------c
Q 018005 148 LTLVSTPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------F 217 (362)
Q Consensus 148 ~~~~~~~~~ykv~~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~------~ 217 (362)
++.... ++++.||... ...+++||.++.+|......+-.+ - .+..+..+.++++++.+++.. .
T Consensus 169 ~~~~g~----~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P--~-pR~gH~~~~~~~~~~v~gG~~~~~~~l~ 241 (482)
T KOG0379|consen 169 ATVVGT----KLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP--S-PRYGHAMVVVGNKLLVFGGGDDGDVYLN 241 (482)
T ss_pred EEEECC----EEEEECCccCcccceeeeeeeccccccceecccCCCCC--C-CCCCceEEEECCeEEEEeccccCCceec
Confidence 333332 7888887542 348999999999999887422211 1 357788999999999987642 3
Q ss_pred EEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEeccc
Q 018005 218 SIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVP 295 (362)
Q Consensus 218 ~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p 295 (362)
.+..+|+.+.+|..+..-++ .|..+..+.++. .+..++++++........--++|.|+.... |.++....
T Consensus 242 D~~~ldl~~~~W~~~~~~g~-----~p~~R~~h~~~~---~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 242 DVHILDLSTWEWKLLPTGGD-----LPSPRSGHSLTV---SGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ceEeeecccceeeeccccCC-----CCCCcceeeeEE---ECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 58999999999985421111 566666666663 788899999854321113457788876654 99998876
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.01 E-value=5.7e-08 Score=92.32 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=133.6
Q ss_pred eEEEEeCCcCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecC----CCeEEEEeCCCCcccccccCCCCcccccc
Q 018005 122 SFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQ 196 (362)
Q Consensus 122 ~~~v~NP~t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 196 (362)
.++++|-.+..|.....-.. +..+.++.++... -+++.+||... ...++.||..|++|+.... ... .-+.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~--~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~--~~~-~P~~ 163 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG--DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSP--TGD-PPPP 163 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC--CeEEEEccccCCCCChhheEeccCCCCcEEEecC--cCC-CCCC
Confidence 49999999999988765422 2222222222111 27888887652 2389999999999998872 211 1124
Q ss_pred CCCcccEEECCEEEEEecCC------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeec
Q 018005 197 SSHQEGVFYKGSLYFTTPEP------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGR 270 (362)
Q Consensus 197 ~~~~~~v~~~G~ly~~~~~~------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~ 270 (362)
+..+.++.++.++|+.++.. +.+.+||+++.+|..+...+. .|..+..+.+++ .++++++++|..
T Consensus 164 r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~-----~P~pR~gH~~~~---~~~~~~v~gG~~- 234 (482)
T KOG0379|consen 164 RAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE-----APSPRYGHAMVV---VGNKLLVFGGGD- 234 (482)
T ss_pred cccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCC-----CCCCCCCceEEE---ECCeEEEEeccc-
Confidence 56788888899999998732 468999999999998765521 566667777774 899999999865
Q ss_pred CCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC-------CeEEEEECCCCce
Q 018005 271 NGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-------PEILYYNVARRTW 342 (362)
Q Consensus 271 ~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~v~~yd~~~~~w 342 (362)
.+....-++|.||-... |.++...+... ..+.....+..++.+++.++.. ..+..||++++.|
T Consensus 235 ~~~~~l~D~~~ldl~~~~W~~~~~~g~~p---------~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w 305 (482)
T KOG0379|consen 235 DGDVYLNDVHILDLSTWEWKLLPTGGDLP---------SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVW 305 (482)
T ss_pred cCCceecceEeeecccceeeeccccCCCC---------CCcceeeeEEECCEEEEEcCCcccccccccccccccccccce
Confidence 12233446777765554 99665432110 1111222234455566554322 3479999999999
Q ss_pred EEcCCCC
Q 018005 343 HWLPSCP 349 (362)
Q Consensus 343 ~~~~~~~ 349 (362)
.++....
T Consensus 306 ~~~~~~~ 312 (482)
T KOG0379|consen 306 SKVESVG 312 (482)
T ss_pred eeeeccc
Confidence 9997776
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.98 E-value=1e-07 Score=84.31 Aligned_cols=202 Identities=12% Similarity=0.178 Sum_probs=129.1
Q ss_pred CeEEEEeCCcCceeeccCCCC--CCccceEEEEeCCCceEEEEEeeecC---------CCeEEEEeCCCCcccccccCCC
Q 018005 121 SSFLVCNLVTLSSRTIDFPTY--PFDFELLTLVSTPSGYKIFMLFAKSF---------PNYAFVYDSTDQSWSKFDIDGF 189 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~~--~~~~~~~~~~~~~~~ykv~~~~~~~~---------~~~~~vy~s~~~~W~~~~~~~~ 189 (362)
+.+++||-.+.+|..+-.+.. ++..+.++..+.+ .++..||... -..+.+||..+++|..+...+-
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~---~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~ 174 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSN---ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG 174 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccC---eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence 468999999999999865543 3444433333322 4455555321 1278899999999998863233
Q ss_pred CccccccCCCcccEEECCEEEEEecC----C-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCC
Q 018005 190 PSMILSQSSHQEGVFYKGSLYFTTPE----P-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESN 260 (362)
Q Consensus 190 p~~~~~~~~~~~~v~~~G~ly~~~~~----~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G 260 (362)
|. .+..++.|+....|...++- + +.+.+||+++-+|+.+..++- -|..+..+.+.+. -+|
T Consensus 175 PS----~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-----~PtpRSGcq~~vt--pqg 243 (521)
T KOG1230|consen 175 PS----PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-----GPTPRSGCQFSVT--PQG 243 (521)
T ss_pred CC----CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-----CCCCCCcceEEec--CCC
Confidence 33 45678899998888877652 1 458999999999999864420 2555666666642 499
Q ss_pred eEEEEEEeec-------CCccceEEEEEECCCC----C--EEEEecccHHHHHHhhhccccCCccEEE-EeeCCEEEEEe
Q 018005 261 KLYLIGGVGR-------NGISTTMKLWELGCGG----N--WIEVERVPEMMCRKFMSVCYHNYDHVYC-FWHQGMICVCC 326 (362)
Q Consensus 261 ~L~vv~~~~~-------~~~~~~i~vw~l~~~~----~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~ 326 (362)
.++|.||+.. +....+-+.|.|+... . |.++....... ..+..+.+ ++.++.-++.+
T Consensus 244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP---------spRsgfsv~va~n~kal~FG 314 (521)
T KOG1230|consen 244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP---------SPRSGFSVAVAKNHKALFFG 314 (521)
T ss_pred cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC---------CCCCceeEEEecCCceEEec
Confidence 9999999763 1234567899998764 2 88887653211 11222222 23333333333
Q ss_pred ecC--------------CeEEEEECCCCceEEc
Q 018005 327 YTW--------------PEILYYNVARRTWHWL 345 (362)
Q Consensus 327 ~~~--------------~~v~~yd~~~~~w~~~ 345 (362)
+.. +.++.||+..++|...
T Consensus 315 GV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 315 GVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 221 2379999999999875
No 26
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.96 E-value=3.8e-10 Score=70.79 Aligned_cols=40 Identities=30% Similarity=0.639 Sum_probs=35.1
Q ss_pred hcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccc
Q 018005 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52 (362)
Q Consensus 13 ~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F 52 (362)
|..||+|++.+||++|+++++.+++.|||+|+.++.++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 6789999999999999999999999999999999987633
No 27
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.93 E-value=1.9e-08 Score=78.20 Aligned_cols=86 Identities=21% Similarity=0.308 Sum_probs=62.5
Q ss_pred cEEECCEEEEEecC----CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceE
Q 018005 202 GVFYKGSLYFTTPE----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM 277 (362)
Q Consensus 202 ~v~~~G~ly~~~~~----~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i 277 (362)
++++||.+||++.. ...|++||+++|+|+.+..|.+ .........|+ + ++|+|+++..... .....+
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~-----~~~~~~~~~L~-~--~~G~L~~v~~~~~-~~~~~~ 71 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPED-----PYSSDCSSTLI-E--YKGKLALVSYNDQ-GEPDSI 71 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeee-----eccccCccEEE-E--eCCeEEEEEecCC-CCcceE
Confidence 57899999999764 4689999999999999875410 11223456677 5 9999999977431 113579
Q ss_pred EEEEECCCCC--EEEEec-ccH
Q 018005 278 KLWELGCGGN--WIEVER-VPE 296 (362)
Q Consensus 278 ~vw~l~~~~~--W~~v~~-~p~ 296 (362)
++|.|++.++ |++... +|.
T Consensus 72 ~iWvLeD~~k~~Wsk~~~~lp~ 93 (129)
T PF08268_consen 72 DIWVLEDYEKQEWSKKHIVLPP 93 (129)
T ss_pred EEEEeeccccceEEEEEEECCh
Confidence 9999986654 998865 444
No 28
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.78 E-value=1.3e-09 Score=68.82 Aligned_cols=43 Identities=40% Similarity=0.651 Sum_probs=36.5
Q ss_pred hhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccccc
Q 018005 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLS 54 (362)
Q Consensus 12 ~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F~~ 54 (362)
+|..||+|++.+||.+|+..++.+++.|||+|++++.+..+..
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 5789999999999999999999999999999999999876543
No 29
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.70 E-value=8.1e-09 Score=62.72 Aligned_cols=38 Identities=45% Similarity=0.802 Sum_probs=35.6
Q ss_pred CCHHHHHHHHccCChhhhhhhhccchhhhhhccCcccc
Q 018005 16 LPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFL 53 (362)
Q Consensus 16 LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F~ 53 (362)
||+|++.+||++|+..++.+++.|||+|+.++.++.+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999999999999999999999887664
No 30
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.66 E-value=2.3e-06 Score=75.99 Aligned_cols=166 Identities=18% Similarity=0.230 Sum_probs=104.3
Q ss_pred eEEEEeCCCCcccccccCCCCccccccCCCcccEEEC-CEEEEEecCC-----------cEEEEEEcCCCeeecCCCCCc
Q 018005 170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYK-GSLYFTTPEP-----------FSIVRFDLENGIWETPNDAND 237 (362)
Q Consensus 170 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~-G~ly~~~~~~-----------~~i~~~D~~~~~w~~~~~p~~ 237 (362)
.++.|+.+++.|+.... |..+. .+.++.+|++. |.+|..++.- ..+..||..+.+|+.+..++
T Consensus 99 dLy~Yn~k~~eWkk~~s---pn~P~-pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g- 173 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVS---PNAPP-PRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG- 173 (521)
T ss_pred eeeEEeccccceeEecc---CCCcC-CCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-
Confidence 78899999999998763 33223 34567777775 7777776631 24889999999999987665
Q ss_pred ccccCCCCcccccceeecccCCCeEEEEEEeecCC--ccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEE
Q 018005 238 HMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG--ISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVY 314 (362)
Q Consensus 238 ~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~--~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~ 314 (362)
-|+.+..+.+++ +..+|.++||..+.. ....-+||.++-+. +|.++.. +. ..+ ..+....
T Consensus 174 -----~PS~RSGHRMva---wK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sg-----a~P---tpRSGcq 236 (521)
T KOG1230|consen 174 -----GPSPRSGHRMVA---WKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SG-----AGP---TPRSGCQ 236 (521)
T ss_pred -----CCCCCccceeEE---eeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CC-----CCC---CCCCcce
Confidence 688888999995 999999999975421 11223455544333 5999876 21 011 1112222
Q ss_pred -EEeeCCEEEEEeecCCe--------------EEEEECCCC-----ceEEcCCC---CCCCCCCCc
Q 018005 315 -CFWHQGMICVCCYTWPE--------------ILYYNVARR-----TWHWLPSC---PSLPHKWSC 357 (362)
Q Consensus 315 -~~~~~~~i~~~~~~~~~--------------v~~yd~~~~-----~w~~~~~~---~~~~~~~~~ 357 (362)
.+.-+|-||+.++++.+ ++..+++++ +|.++-.. |.+..-+||
T Consensus 237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv 302 (521)
T KOG1230|consen 237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSV 302 (521)
T ss_pred EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeE
Confidence 22335667877665422 578888873 56665333 334444444
No 31
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.60 E-value=9.6e-07 Score=71.63 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=75.6
Q ss_pred cEEECCEEEEEecCC-----cEEEEEEcCCCee-ecCCCCCcccccCCCCccc----ccceeecccCCCeEEEEEEeecC
Q 018005 202 GVFYKGSLYFTTPEP-----FSIVRFDLENGIW-ETPNDANDHMTMMLPHELT----FFRLVNDGEESNKLYLIGGVGRN 271 (362)
Q Consensus 202 ~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w-~~~~~p~~~~~~~~p~~~~----~~~lv~~~~~~G~L~vv~~~~~~ 271 (362)
+|++||.+||++... ..|++||+.+|+| ..++ +|.... ...|.+. .+|+|+++...
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~---------lP~~~~~~~~~~~L~~v--~~~~L~~~~~~--- 66 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP---------LPFCNDDDDDSVSLSVV--RGDCLCVLYQC--- 66 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC---------CCCccCccCCEEEEEEe--cCCEEEEEEec---
Confidence 589999999998643 1699999999999 6655 333222 3344222 57899999652
Q ss_pred CccceEEEEEECCC----CCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEe-ecC-----CeEEEEECCCCc
Q 018005 272 GISTTMKLWELGCG----GNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCC-YTW-----PEILYYNVARRT 341 (362)
Q Consensus 272 ~~~~~i~vw~l~~~----~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-----~~v~~yd~~~~~ 341 (362)
.....++||.+++. .+|++..+++......+.. ........+..++.+.+.. ... ..+..|+ +++.
T Consensus 67 ~~~~~~~IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~---~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~ 142 (164)
T PF07734_consen 67 DETSKIEIWVMKKYGYGKESWTKLFTIDLPPLPSLFF---HFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGK 142 (164)
T ss_pred cCCccEEEEEEeeeccCcceEEEEEEEecCCCCCccc---ccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCE
Confidence 23456999999852 2499998886432211110 0001112223344444432 111 3477888 6677
Q ss_pred eEEcCC
Q 018005 342 WHWLPS 347 (362)
Q Consensus 342 w~~~~~ 347 (362)
.+.+.-
T Consensus 143 ~~~~~~ 148 (164)
T PF07734_consen 143 FIEVDI 148 (164)
T ss_pred EEEccc
Confidence 776643
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.41 E-value=1.4e-05 Score=69.50 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=36.0
Q ss_pred hcCCC----HHHHHHHHccCChhhhhhhhccchhhhhhccCcc
Q 018005 13 WSRLP----EDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS 51 (362)
Q Consensus 13 ~~~LP----~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~ 51 (362)
+..|| +++.+.||+.|...+|..+..|||+|+++++++.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~ 117 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGM 117 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccch
Confidence 46789 9999999999999999999999999999998763
No 33
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.00 E-value=0.00033 Score=64.34 Aligned_cols=214 Identities=15% Similarity=0.146 Sum_probs=116.3
Q ss_pred CceEEEe-cCCC---CeEEEEeCCcCceeeccCC--CCCCccceEEEEeCCCceEEEEEeeec--CCCeEEEEeCCCC--
Q 018005 110 KGLLCFS-LPSS---SSFLVCNLVTLSSRTIDFP--TYPFDFELLTLVSTPSGYKIFMLFAKS--FPNYAFVYDSTDQ-- 179 (362)
Q Consensus 110 ~Gll~~~-~~~~---~~~~v~NP~t~~w~~lP~~--~~~~~~~~~~~~~~~~~ykv~~~~~~~--~~~~~~vy~s~~~-- 179 (362)
.-|+.+. ++++ ++++|||-.|+||-. |.. ..+....++||...+. +|+++||+. ...+=+.|.....
T Consensus 42 kELiviFGGGNEGiiDELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdGt--rilvFGGMvEYGkYsNdLYELQasRW 118 (830)
T KOG4152|consen 42 KELIVIFGGGNEGIIDELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDGT--RILVFGGMVEYGKYSNDLYELQASRW 118 (830)
T ss_pred eeeEEEecCCcccchhhhhhhccccceeec-chhcCCCCCchhhcceEecCc--eEEEEccEeeeccccchHHHhhhhhh
Confidence 3454444 4333 478999999999974 332 2234445566665433 888888863 2334456666554
Q ss_pred ccccccc----CCCCccccccCCCcccEEECCEEEEEecCC--------------cEEEEEEcC--CC--eeecCCCCCc
Q 018005 180 SWSKFDI----DGFPSMILSQSSHQEGVFYKGSLYFTTPEP--------------FSIVRFDLE--NG--IWETPNDAND 237 (362)
Q Consensus 180 ~W~~~~~----~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~--------------~~i~~~D~~--~~--~w~~~~~p~~ 237 (362)
.|+.+.. .+.| ++ .+..+.-..++++.|..++-. +.+...++. .+ .|+....-
T Consensus 119 eWkrlkp~~p~nG~p--PC-PRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~-- 193 (830)
T KOG4152|consen 119 EWKRLKPKTPKNGPP--PC-PRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITY-- 193 (830)
T ss_pred hHhhcCCCCCCCCCC--CC-CccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEeccccc--
Confidence 4555541 1122 23 346677778889999987611 224444443 32 56653111
Q ss_pred ccccCCCCcccccceeecccCC---CeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccE
Q 018005 238 HMTMMLPHELTFFRLVNDGEES---NKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHV 313 (362)
Q Consensus 238 ~~~~~~p~~~~~~~lv~~~~~~---G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~ 313 (362)
+.+|..++.+.-|..-|.| .++++.|++.+ ..-=++|.||-+.. |.+...-... . +. +.-.
T Consensus 194 ---Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G---~RLgDLW~Ldl~Tl~W~kp~~~G~~------P--lP-RSLH 258 (830)
T KOG4152|consen 194 ---GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG---CRLGDLWTLDLDTLTWNKPSLSGVA------P--LP-RSLH 258 (830)
T ss_pred ---CCCCCCcccceeEEEEeccCCcceEEEEccccc---ccccceeEEecceeecccccccCCC------C--CC-cccc
Confidence 1155555544333211133 46788887643 23347899987765 9986421100 0 00 0111
Q ss_pred EEEeeCCEEEEEee-------------------cCCeEEEEECCCCceEEcC
Q 018005 314 YCFWHQGMICVCCY-------------------TWPEILYYNVARRTWHWLP 346 (362)
Q Consensus 314 ~~~~~~~~i~~~~~-------------------~~~~v~~yd~~~~~w~~~~ 346 (362)
.+...||..|+.++ -...+-++|+++..|+.+-
T Consensus 259 sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 259 SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred cceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeee
Confidence 22234555666542 0124789999999999874
No 34
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.00071 Score=59.63 Aligned_cols=157 Identities=20% Similarity=0.272 Sum_probs=95.2
Q ss_pred CeEEEEeCC--cCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecC--------CCeEEEEeCCCCcccccccCCC
Q 018005 121 SSFLVCNLV--TLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF--------PNYAFVYDSTDQSWSKFDIDGF 189 (362)
Q Consensus 121 ~~~~v~NP~--t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~--------~~~~~vy~s~~~~W~~~~~~~~ 189 (362)
..+++.|.. .+.|.++...+- +|.....++... ++++.++... ...++.||+.+++|....+ ..
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~----kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t-~s 132 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGG----KLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT-RS 132 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCC----eEEEeeccccCCCCCceEeeeeEEecCCCChhheecc-cc
Confidence 345554443 467988876554 343333333322 6776665421 1278999999999998874 33
Q ss_pred CccccccCCCcccEEECC-EEEEEecCC---------------------------------------cEEEEEEcCCCee
Q 018005 190 PSMILSQSSHQEGVFYKG-SLYFTTPEP---------------------------------------FSIVRFDLENGIW 229 (362)
Q Consensus 190 p~~~~~~~~~~~~v~~~G-~ly~~~~~~---------------------------------------~~i~~~D~~~~~w 229 (362)
|. . ...+.++.+++ ++|+.++-. ..+++||+++++|
T Consensus 133 P~-g---l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W 208 (381)
T COG3055 133 PT-G---LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQW 208 (381)
T ss_pred cc-c---cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchh
Confidence 33 2 24566777777 999987510 2489999999999
Q ss_pred ecCCCCCcccccCCCCcc-cccceeecccCCCeEEEEEEeecCCccceEEEEEECC--CCC-EEEEecccHHH
Q 018005 230 ETPNDANDHMTMMLPHEL-TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC--GGN-WIEVERVPEMM 298 (362)
Q Consensus 230 ~~~~~p~~~~~~~~p~~~-~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~--~~~-W~~v~~~p~~~ 298 (362)
+..- - .|-.. ....++ . -+++|.+|.+.-.++ ..+-++++.+. ++. |.++..+|...
T Consensus 209 ~~~G-~-------~pf~~~aGsa~~-~--~~n~~~lInGEiKpG-LRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 209 RNLG-E-------NPFYGNAGSAVV-I--KGNKLTLINGEIKPG-LRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred hhcC-c-------CcccCccCccee-e--cCCeEEEEcceecCC-ccccceeEEEeccCceeeeeccCCCCCC
Confidence 9853 1 23222 233444 2 577799998855433 23334444433 333 99998887543
No 35
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.66 E-value=0.0043 Score=57.29 Aligned_cols=264 Identities=14% Similarity=0.127 Sum_probs=129.2
Q ss_pred hhhhhccC--ccccccccccCCCcceEEEE-ecCC--CCceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCc-eEEE
Q 018005 42 HFNSLLFS--PSFLSKTKCSSSAFSCFILL-SHPQ--CYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKG-LLCF 115 (362)
Q Consensus 42 ~W~~~i~~--~~F~~~~~~~~~~~~~~l~~-~~~~--~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~G-ll~~ 115 (362)
+||++..+ |.-+.+|-.++-....++++ .+++ ..+++++|+...++|..-....-.|.....+ -..|+| -|++
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~-GfvcdGtrilv 96 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAF-GFVCDGTRILV 96 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhc-ceEecCceEEE
Confidence 46666543 33333333222222234443 3333 2367899999999997532221222222222 223445 2444
Q ss_pred ecC------CCCeEEEEeCCcCceeeccCCC-------CCCccceEEEEeCCCceEEEEEeeecCC------------Ce
Q 018005 116 SLP------SSSSFLVCNLVTLSSRTIDFPT-------YPFDFELLTLVSTPSGYKIFMLFAKSFP------------NY 170 (362)
Q Consensus 116 ~~~------~~~~~~v~NP~t~~w~~lP~~~-------~~~~~~~~~~~~~~~~ykv~~~~~~~~~------------~~ 170 (362)
.++ .++.++-.-..-=+|++|-+-. .++-.+.|.+.. -|.+.+||..++ ..
T Consensus 97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g----nKcYlFGGLaNdseDpknNvPrYLnD 172 (830)
T KOG4152|consen 97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG----NKCYLFGGLANDSEDPKNNVPRYLND 172 (830)
T ss_pred EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec----cEeEEeccccccccCcccccchhhcc
Confidence 433 2233333333334577774321 122223333332 266777664321 14
Q ss_pred EEEEeCCC----CcccccccCCCCccccccCCCcccEEE------CCEEEEEecC----CcEEEEEEcCCCeeecCCCCC
Q 018005 171 AFVYDSTD----QSWSKFDIDGFPSMILSQSSHQEGVFY------KGSLYFTTPE----PFSIVRFDLENGIWETPNDAN 236 (362)
Q Consensus 171 ~~vy~s~~----~~W~~~~~~~~p~~~~~~~~~~~~v~~------~G~ly~~~~~----~~~i~~~D~~~~~w~~~~~p~ 236 (362)
+++....- =.|...-..+.- +.++ -++.+|.. ..++|+.++. -..+.-.|+++..|......+
T Consensus 173 lY~leL~~Gsgvv~W~ip~t~Gv~--P~pR-ESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G 249 (830)
T KOG4152|consen 173 LYILELRPGSGVVAWDIPITYGVL--PPPR-ESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSG 249 (830)
T ss_pred eEEEEeccCCceEEEecccccCCC--CCCc-ccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccC
Confidence 45544432 248655421111 1122 34555544 2467777653 245889999999998754221
Q ss_pred cccccCCCCcccccceeecccCCCeEEEEEEeec----CC----------ccceEEEEEECCCCCEEEEecccHHHHHHh
Q 018005 237 DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGR----NG----------ISTTMKLWELGCGGNWIEVERVPEMMCRKF 302 (362)
Q Consensus 237 ~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~----~~----------~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~ 302 (362)
.. -||+.++...+ .+++.|+.|+..- +. .+..+..|.|| ...|+.+..-..+- +-
T Consensus 250 --~~-PlPRSLHsa~~-----IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld-t~~W~tl~~d~~ed--~t 318 (830)
T KOG4152|consen 250 --VA-PLPRSLHSATT-----IGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD-TMAWETLLMDTLED--NT 318 (830)
T ss_pred --CC-CCCccccccee-----ecceeEEecceeeeeccccccccccceeeeccceeeeeec-chheeeeeeccccc--cc
Confidence 00 06665544333 6899999998541 10 23556777774 34488763221110 00
Q ss_pred hhccccCCccEEEEeeCCEEEEEee
Q 018005 303 MSVCYHNYDHVYCFWHQGMICVCCY 327 (362)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~i~~~~~ 327 (362)
.. ..+....+++.+.++|+-++
T Consensus 319 iP---R~RAGHCAvAigtRlYiWSG 340 (830)
T KOG4152|consen 319 IP---RARAGHCAVAIGTRLYIWSG 340 (830)
T ss_pred cc---cccccceeEEeccEEEEEec
Confidence 10 13345556678889999864
No 36
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=0.0032 Score=55.64 Aligned_cols=159 Identities=18% Similarity=0.267 Sum_probs=99.4
Q ss_pred CeEEEEeCCC--CcccccccCCCCccccccCCCcccEEECCEEEEEecCC----------cEEEEEEcCCCeeecCCCCC
Q 018005 169 NYAFVYDSTD--QSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----------FSIVRFDLENGIWETPNDAN 236 (362)
Q Consensus 169 ~~~~vy~s~~--~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~----------~~i~~~D~~~~~w~~~~~p~ 236 (362)
...+.-|.+. ..|+..+ ..|-.. +-....++++|+||+.++.+ ..+..||+.+++|..++.-
T Consensus 58 ~afy~ldL~~~~k~W~~~a--~FpG~~---rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~- 131 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIA--DFPGGA---RNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR- 131 (381)
T ss_pred ccceehhhhcCCCCceEcc--cCCCcc---cccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc-
Confidence 4566667754 6899998 666521 23455788999999997632 3578999999999987655
Q ss_pred cccccCCCCcccccceeecccCCC-eEEEEEEeecCC--------------------------------ccceEEEEEEC
Q 018005 237 DHMTMMLPHELTFFRLVNDGEESN-KLYLIGGVGRNG--------------------------------ISTTMKLWELG 283 (362)
Q Consensus 237 ~~~~~~~p~~~~~~~lv~~~~~~G-~L~vv~~~~~~~--------------------------------~~~~i~vw~l~ 283 (362)
.|.+........ .++ ++++.++++... ..-.-+|+..+
T Consensus 132 ------sP~gl~G~~~~~---~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~ 202 (381)
T COG3055 132 ------SPTGLVGASTFS---LNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD 202 (381)
T ss_pred ------cccccccceeEe---cCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence 677766555543 666 899999975310 00112455555
Q ss_pred CCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec------CCeEEEEECCCC--ceEEcCCCCCCCC
Q 018005 284 CGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT------WPEILYYNVARR--TWHWLPSCPSLPH 353 (362)
Q Consensus 284 ~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~v~~yd~~~~--~w~~~~~~~~~~~ 353 (362)
+.++ |.-....| +.. ......+..+|.+.+..+. +.++..++...+ +|.+++.+|-+.+
T Consensus 203 p~~n~W~~~G~~p------f~~-----~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~ 270 (381)
T COG3055 203 PSTNQWRNLGENP------FYG-----NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIG 270 (381)
T ss_pred cccchhhhcCcCc------ccC-----ccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCC
Confidence 5554 77666554 221 1222333456644444321 235677777754 8999988877543
No 37
>PF13964 Kelch_6: Kelch motif
Probab=97.53 E-value=0.00031 Score=44.34 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=30.8
Q ss_pred EEEeeCCEEEEEeecC------CeEEEEECCCCceEEcCCCCCC
Q 018005 314 YCFWHQGMICVCCYTW------PEILYYNVARRTWHWLPSCPSL 351 (362)
Q Consensus 314 ~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~~~~~~~~ 351 (362)
.++..++.||+.++.. ..+.+||+++++|+.++++|.+
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 4556778899987643 3589999999999999999865
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=6e-05 Score=64.93 Aligned_cols=40 Identities=38% Similarity=0.627 Sum_probs=37.2
Q ss_pred hhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCcc
Q 018005 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS 51 (362)
Q Consensus 12 ~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~ 51 (362)
.|.+||||++..||+.|+.++|.++..|||+|+++.++.+
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 4889999999999999999999999999999999987654
No 39
>PF13964 Kelch_6: Kelch motif
Probab=97.38 E-value=0.0005 Score=43.34 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=30.3
Q ss_pred CCcccEEECCEEEEEecCC------cEEEEEEcCCCeeecCC
Q 018005 198 SHQEGVFYKGSLYFTTPEP------FSIVRFDLENGIWETPN 233 (362)
Q Consensus 198 ~~~~~v~~~G~ly~~~~~~------~~i~~~D~~~~~w~~~~ 233 (362)
..+..|.++|+||++++.. ..+.+||+++++|+.+.
T Consensus 3 ~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred ccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 4567899999999998742 46899999999999874
No 40
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.32 E-value=0.031 Score=53.95 Aligned_cols=282 Identities=17% Similarity=0.126 Sum_probs=135.0
Q ss_pred hhhhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccccccccc-cCCCc----ceEEEEecCC--CCc-eee-e
Q 018005 10 PAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKC-SSSAF----SCFILLSHPQ--CYD-QYP-L 80 (362)
Q Consensus 10 ~~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F~~~~~~-~~~~~----~~~l~~~~~~--~~~-~~~-~ 80 (362)
+.-++.||.++...||..|+.++++++++||+.|+.++.+.....+... ..... .+-....... .+. ... .
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~ 184 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRR 184 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhh
Confidence 4566889999999999999999999999999999999986554332211 10000 0000000000 000 000 0
Q ss_pred eeCCCCCeEeecCCc---CCCC-CCceEEEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCc
Q 018005 81 YDSTHGTWRRLSLPY---SLLL-PSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSG 156 (362)
Q Consensus 81 ~d~~~~~w~~~~~~~---~~~~-~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ 156 (362)
..-....|.....+. .++. ........-.+| .+..+.....+.+|+..++.-...+.....-...++.+.. ..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~-~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~ 261 (537)
T KOG0274|consen 185 RFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDG-FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GG 261 (537)
T ss_pred hhhccccccccccccceeecccCcchhhhheeecC-eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CC
Confidence 011112332222110 0100 000100011122 2233333455679999999877664443333333444432 23
Q ss_pred eEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEE-ecCCcEEEEEEcCCCeeecCC
Q 018005 157 YKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFT-TPEPFSIVRFDLENGIWETPN 233 (362)
Q Consensus 157 ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~-~~~~~~i~~~D~~~~~w~~~~ 233 (362)
.+++. |. .+.++.++|-.++.=... +. .....+.+ .+..+.+ +....++.++|..+...-.+.
T Consensus 262 ~~lvs-gS--~D~t~rvWd~~sg~C~~~---------l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~ 327 (537)
T KOG0274|consen 262 DKLVS-GS--TDKTERVWDCSTGECTHS---------LQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLL 327 (537)
T ss_pred CEEEE-Ee--cCCcEEeEecCCCcEEEE---------ec--CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEe
Confidence 34442 22 234666776555421111 10 11212211 2233333 345568999999876554432
Q ss_pred CCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccE
Q 018005 234 DANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHV 313 (362)
Q Consensus 234 ~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~ 313 (362)
. ........+ . +++.+.+.+.. ...|.||+.. ..+ -+.++ - ++-..+
T Consensus 328 ~----------~h~~~V~~v-~--~~~~~lvsgs~-----d~~v~VW~~~-~~~--cl~sl--------~----gH~~~V 374 (537)
T KOG0274|consen 328 R----------GHTGPVNCV-Q--LDEPLLVSGSY-----DGTVKVWDPR-TGK--CLKSL--------S----GHTGRV 374 (537)
T ss_pred c----------cccccEEEE-E--ecCCEEEEEec-----CceEEEEEhh-hce--eeeee--------c----CCcceE
Confidence 1 000111223 2 56777776653 3589999774 221 12222 0 223345
Q ss_pred EEEeeCC-EEEEEeecCCeEEEEECCCCc
Q 018005 314 YCFWHQG-MICVCCYTWPEILYYNVARRT 341 (362)
Q Consensus 314 ~~~~~~~-~i~~~~~~~~~v~~yd~~~~~ 341 (362)
.++..++ -.++.+.....|-++|+++.+
T Consensus 375 ~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 375 YSLIVDSENRLLSGSLDTTIKVWDLRTKR 403 (537)
T ss_pred EEEEecCcceEEeeeeccceEeecCCchh
Confidence 5543333 444544455779999999885
No 41
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.28 E-value=0.00065 Score=42.12 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=30.2
Q ss_pred EEEEeeCCEEEEEeecCC------eEEEEECCCCceEEcCCCC
Q 018005 313 VYCFWHQGMICVCCYTWP------EILYYNVARRTWHWLPSCP 349 (362)
Q Consensus 313 ~~~~~~~~~i~~~~~~~~------~v~~yd~~~~~w~~~~~~~ 349 (362)
..++..++.||+.++... .++.||+++++|+.++++|
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 456678899999876433 4899999999999998876
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.27 E-value=0.00076 Score=41.81 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=29.5
Q ss_pred ccceeecccCCCeEEEEEEeec-CCccceEEEEEECCCCCEEEEeccc
Q 018005 249 FFRLVNDGEESNKLYLIGGVGR-NGISTTMKLWELGCGGNWIEVERVP 295 (362)
Q Consensus 249 ~~~lv~~~~~~G~L~vv~~~~~-~~~~~~i~vw~l~~~~~W~~v~~~p 295 (362)
.+.+++ .+++||++||... .....++++|++ +.+.|+++.+||
T Consensus 4 ~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~yd~-~~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVV---VGNKIYVIGGYDGNNQPTNSVEVYDP-ETNTWEELPPMP 47 (47)
T ss_dssp SEEEEE---ETTEEEEEEEBESTSSBEEEEEEEET-TTTEEEEEEEES
T ss_pred cCEEEE---ECCEEEEEeeecccCceeeeEEEEeC-CCCEEEEcCCCC
Confidence 344553 8999999999876 334455555544 234499999886
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.77 E-value=0.0024 Score=40.03 Aligned_cols=38 Identities=29% Similarity=0.621 Sum_probs=27.2
Q ss_pred CCCeEEEEEEe-ecCCccceEEEEEECCCCC-EEEEeccc
Q 018005 258 ESNKLYLIGGV-GRNGISTTMKLWELGCGGN-WIEVERVP 295 (362)
Q Consensus 258 ~~G~L~vv~~~-~~~~~~~~i~vw~l~~~~~-W~~v~~~p 295 (362)
.+++|||+|+. .........++|.+|..+. |+++..+|
T Consensus 10 ~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 10 LDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 89999999998 2223345556677776655 99988764
No 44
>smart00612 Kelch Kelch domain.
Probab=96.71 E-value=0.0037 Score=38.40 Aligned_cols=44 Identities=20% Similarity=0.340 Sum_probs=29.7
Q ss_pred EEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECC
Q 018005 158 KIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKG 207 (362)
Q Consensus 158 kv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G 207 (362)
+|+++||... ...+++||+++++|+..+ .||. .+..+..+.++|
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~~~----~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP--SMPT----PRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC--CCCC----ccccceEEEeCC
Confidence 3667776532 348999999999999988 6665 234444555554
No 45
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.68 E-value=0.32 Score=42.04 Aligned_cols=208 Identities=16% Similarity=0.205 Sum_probs=109.5
Q ss_pred CceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCC
Q 018005 110 KGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGF 189 (362)
Q Consensus 110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~ 189 (362)
+|-|++.....+.++.++|.+++......+. ..++++... +-++++... ....++|..+++++... ..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~--~g~l~v~~~----~~~~~~d~~~g~~~~~~--~~ 78 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP--DGRLYVADS----GGIAVVDPDTGKVTVLA--DL 78 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECT--TSEEEEEET----TCEEEEETTTTEEEEEE--EE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEcc--CCEEEEEEc----CceEEEecCCCcEEEEe--ec
Confidence 5555555545678999999999876544332 223333311 235555432 34567799999998776 33
Q ss_pred CccccccCCCcccEEE-CCEEEEEecCC--------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCC
Q 018005 190 PSMILSQSSHQEGVFY-KGSLYFTTPEP--------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESN 260 (362)
Q Consensus 190 p~~~~~~~~~~~~v~~-~G~ly~~~~~~--------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G 260 (362)
+..........+.++- +|.+|+..... ..+..+++. .+...+.... ..|. .+... -+|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-----~~pN-----Gi~~s--~dg 145 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-----GFPN-----GIAFS--PDG 145 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-----SSEE-----EEEEE--TTS
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-----cccc-----ceEEC--Ccc
Confidence 2111011112222222 78998875421 358889998 5554432110 0222 23322 566
Q ss_pred e-EEEEEEeecCCccceEEEEEECCCCC-EEEEe---cccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEE
Q 018005 261 K-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVE---RVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYY 335 (362)
Q Consensus 261 ~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~y 335 (362)
+ ||+... ....|..+.++..+. +.... .++... ....=.++..++.||+.....+.|.+|
T Consensus 146 ~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 146 KTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGP----------GYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp SEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSS----------CEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred hheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCC----------cCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 5 555543 346677777764443 44332 221100 011223344567789988778899999
Q ss_pred ECCCCceEEcCCCCCCCCCCCcce
Q 018005 336 NVARRTWHWLPSCPSLPHKWSCGF 359 (362)
Q Consensus 336 d~~~~~w~~~~~~~~~~~~~~~~~ 359 (362)
|++-+....++ +| ..+.-+|.|
T Consensus 211 ~p~G~~~~~i~-~p-~~~~t~~~f 232 (246)
T PF08450_consen 211 DPDGKLLREIE-LP-VPRPTNCAF 232 (246)
T ss_dssp ETTSCEEEEEE--S-SSSEEEEEE
T ss_pred CCCccEEEEEc-CC-CCCEEEEEE
Confidence 99944444443 44 235666666
No 46
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=96.64 E-value=0.0048 Score=38.60 Aligned_cols=30 Identities=10% Similarity=0.343 Sum_probs=25.0
Q ss_pred CeEEEEECCCCceEEcCCCCCCCCCCCcce
Q 018005 330 PEILYYNVARRTWHWLPSCPSLPHKWSCGF 359 (362)
Q Consensus 330 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~ 359 (362)
+.+.+||+++++|++++..|.+...+++.+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 358999999999999999888877766653
No 47
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.30 E-value=0.01 Score=36.99 Aligned_cols=32 Identities=28% Similarity=0.525 Sum_probs=19.3
Q ss_pred CCEEEEEeec------CCeEEEEECCCCceEEcCCCCC
Q 018005 319 QGMICVCCYT------WPEILYYNVARRTWHWLPSCPS 350 (362)
Q Consensus 319 ~~~i~~~~~~------~~~v~~yd~~~~~w~~~~~~~~ 350 (362)
++.||+.++. .+.+..||+++++|++++++|.
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 4667776542 2358999999999999987774
No 48
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.25 E-value=0.019 Score=35.86 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=28.5
Q ss_pred EEEEeeCCEEEEEeec--------CCeEEEEECCCCceEEcCCCC
Q 018005 313 VYCFWHQGMICVCCYT--------WPEILYYNVARRTWHWLPSCP 349 (362)
Q Consensus 313 ~~~~~~~~~i~~~~~~--------~~~v~~yd~~~~~w~~~~~~~ 349 (362)
..++..++.||+.++. ...+.+||+++++|+.++.+|
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 3455678888888755 124899999999999998765
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=96.19 E-value=0.14 Score=43.94 Aligned_cols=155 Identities=13% Similarity=0.200 Sum_probs=84.2
Q ss_pred eEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC---cEEEEEEcCC----CeeecCCCCCcccccC
Q 018005 170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP---FSIVRFDLEN----GIWETPNDANDHMTMM 242 (362)
Q Consensus 170 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~---~~i~~~D~~~----~~w~~~~~p~~~~~~~ 242 (362)
...+||+.+++++... +....+ ++...+.-||.+...++.. ..+..|++.+ ..|......
T Consensus 47 ~s~~yD~~tn~~rpl~---v~td~F---CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~------- 113 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLT---VQTDTF---CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND------- 113 (243)
T ss_pred EEEEEecCCCcEEecc---CCCCCc---ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-------
Confidence 3458999999999886 222122 3444455589888887642 4577899876 567653211
Q ss_pred CCCcccc-cceeecccCCCeEEEEEEeecCCccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCC
Q 018005 243 LPHELTF-FRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQG 320 (362)
Q Consensus 243 ~p~~~~~-~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (362)
|-..+=. .... - -+|+++|++|.. ..+.|.|--.... ....+.-+. ...+ ... ..+.++..+.-++
T Consensus 114 m~~~RWYpT~~~-L--~DG~vlIvGG~~----~~t~E~~P~~~~~~~~~~~~~l~-~~~~-~~~---~nlYP~~~llPdG 181 (243)
T PF07250_consen 114 MQSGRWYPTATT-L--PDGRVLIVGGSN----NPTYEFWPPKGPGPGPVTLPFLS-QTSD-TLP---NNLYPFVHLLPDG 181 (243)
T ss_pred ccCCCccccceE-C--CCCCEEEEeCcC----CCcccccCCccCCCCceeeecch-hhhc-cCc---cccCceEEEcCCC
Confidence 2222212 2222 1 699999999943 3445555221111 111111111 1100 000 1223344444456
Q ss_pred EEEEEeecCCeEEEEECCCCce-EEcCCCCCC
Q 018005 321 MICVCCYTWPEILYYNVARRTW-HWLPSCPSL 351 (362)
Q Consensus 321 ~i~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~ 351 (362)
.|++.. ...-..||.+++++ +.+|.+|-.
T Consensus 182 ~lFi~a--n~~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 182 NLFIFA--NRGSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred CEEEEE--cCCcEEEeCCCCeEEeeCCCCCCC
Confidence 667665 24568889999987 778888864
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.10 E-value=0.71 Score=38.88 Aligned_cols=214 Identities=9% Similarity=0.050 Sum_probs=100.6
Q ss_pred CCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc----cccc
Q 018005 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS----WSKF 184 (362)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~----W~~~ 184 (362)
.+|--|+..++++.+.+|||..+.-.+-=.- ..+. .+-.+...+.-|+...| ....+.+||.+|++ |+.+
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~E--VlD~~~s~Dnskf~s~G---gDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHE--VLDAALSSDNSKFASCG---GDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecC-CCce--eeeccccccccccccCC---CCceEEEEEcccCeeeeecccc
Confidence 4555667777788999999999875431100 0011 11011111222443333 34688999998864 5544
Q ss_pred ccCCCCccccccCCCcccEEECC--EEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeE
Q 018005 185 DIDGFPSMILSQSSHQEGVFYKG--SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKL 262 (362)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G--~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L 262 (362)
.- .-+.|.+|. .+.+-++-..++-++|-.+..++.++.-.+-.+..+.-....+.++. |..+|.+
T Consensus 101 ~a------------qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIva-GS~DGtv 167 (307)
T KOG0316|consen 101 LA------------QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVA-GSVDGTV 167 (307)
T ss_pred cc------------eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEe-eccCCcE
Confidence 31 112333332 22222223346888888888777654221111111111122344442 5556665
Q ss_pred EEEEEeec----CCccceEEEEEECCCCCEEEEecccHH----------HHHHhhhccccCCccEEEEeeCCEEEEEeec
Q 018005 263 YLIGGVGR----NGISTTMKLWELGCGGNWIEVERVPEM----------MCRKFMSVCYHNYDHVYCFWHQGMICVCCYT 328 (362)
Q Consensus 263 ~vv~~~~~----~~~~~~i~vw~l~~~~~W~~v~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 328 (362)
-......+ +.....|..-.+..+++-..+..|... +...+.+..-..+..-.|+...+.+++.+..
T Consensus 168 RtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSE 247 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE 247 (307)
T ss_pred EEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccC
Confidence 44433211 111222333333344555655554321 1122221110111112334455666776666
Q ss_pred CCeEEEEECCCCc
Q 018005 329 WPEILYYNVARRT 341 (362)
Q Consensus 329 ~~~v~~yd~~~~~ 341 (362)
.+.++.||+...+
T Consensus 248 DG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 248 DGKVYFWDLVDET 260 (307)
T ss_pred CceEEEEEeccce
Confidence 6789999998764
No 51
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.83 E-value=0.0032 Score=54.70 Aligned_cols=43 Identities=21% Similarity=0.393 Sum_probs=37.0
Q ss_pred hcCCCHHHHHHHHccCC-----hhhhhhhhccchhhhhhccCcccccc
Q 018005 13 WSRLPEDLLDHVLSFLP-----PKMLLKLRSTCKHFNSLLFSPSFLSK 55 (362)
Q Consensus 13 ~~~LP~dll~~IL~rLp-----~~~l~~~r~VcK~W~~~i~~~~F~~~ 55 (362)
++.||+|++.+||.++- ..++.++.+|||.|+....++.|-+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 35799999999999873 58899999999999999999877554
No 52
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.64 E-value=0.79 Score=39.64 Aligned_cols=119 Identities=10% Similarity=0.165 Sum_probs=71.0
Q ss_pred EEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccc
Q 018005 105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK 183 (362)
Q Consensus 105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~ 183 (362)
+++.-+|-|.+..-..+-+...||.++.-..+|++.. ......+..++.+ ++-. . .-....++.||+.+.+|.+
T Consensus 194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig---~~wi-t-twg~g~l~rfdPs~~sW~e 268 (353)
T COG4257 194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG---RAWI-T-TWGTGSLHRFDPSVTSWIE 268 (353)
T ss_pred eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccC---cEEE-e-ccCCceeeEeCccccccee
Confidence 3455566555543334567778999998777777643 1111111222211 2222 1 2234589999999999998
Q ss_pred cccCCCCccccccCCCcccEEEC--CEEEEEecCCcEEEEEEcCCCeeecCCCC
Q 018005 184 FDIDGFPSMILSQSSHQEGVFYK--GSLYFTTPEPFSIVRFDLENGIWETPNDA 235 (362)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~~~--G~ly~~~~~~~~i~~~D~~~~~w~~~~~p 235 (362)
.+ +|. .........++ |.++.-......|..||+++++|+++..|
T Consensus 269 yp---LPg----s~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 269 YP---LPG----SKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred ee---CCC----CCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCC
Confidence 86 554 11233445553 56554344556799999999999997544
No 53
>smart00612 Kelch Kelch domain.
Probab=95.40 E-value=0.025 Score=34.54 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.6
Q ss_pred CeEEEEECCCCceEEcCCCCCCCCCCC
Q 018005 330 PEILYYNVARRTWHWLPSCPSLPHKWS 356 (362)
Q Consensus 330 ~~v~~yd~~~~~w~~~~~~~~~~~~~~ 356 (362)
..+++||+++++|+.++++|.....++
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~r~~~~ 41 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTPRSGHG 41 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCccccce
Confidence 458999999999999999988765554
No 54
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=94.93 E-value=0.046 Score=33.97 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCcccEEE-CCEEEEEecCC------cEEEEEEcCCCeeecC
Q 018005 198 SHQEGVFY-KGSLYFTTPEP------FSIVRFDLENGIWETP 232 (362)
Q Consensus 198 ~~~~~v~~-~G~ly~~~~~~------~~i~~~D~~~~~w~~~ 232 (362)
..+.++.+ ++.+|..++.. ..+..||+++++|+.+
T Consensus 3 ~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred ceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 45667777 68999998632 3589999999999987
No 55
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=94.67 E-value=0.035 Score=51.44 Aligned_cols=141 Identities=16% Similarity=0.235 Sum_probs=88.9
Q ss_pred cCCCcccEEECC--EEEEEecCC-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEe
Q 018005 196 QSSHQEGVFYKG--SLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGV 268 (362)
Q Consensus 196 ~~~~~~~v~~~G--~ly~~~~~~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~ 268 (362)
.+..+..|...| ++|.-++.. .....|..+.+.|+.+..-. ..|..+.++.+|. -+...+||++|.+
T Consensus 260 ~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t-----~~PG~RsCHRMVi-d~S~~KLYLlG~Y 333 (723)
T KOG2437|consen 260 MRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT-----EGPGARSCHRMVI-DISRRKLYLLGRY 333 (723)
T ss_pred ccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC-----CCCcchhhhhhhh-hhhHhHHhhhhhc
Confidence 345678888877 999888743 23678999999999864221 1677788888874 2256689999886
Q ss_pred ecCC----ccceEEEEEECCCCC-EEEEecccHHHHHHhhh-ccccCCccEEEEeeCCEEEEEeec---C-----CeEEE
Q 018005 269 GRNG----ISTTMKLWELGCGGN-WIEVERVPEMMCRKFMS-VCYHNYDHVYCFWHQGMICVCCYT---W-----PEILY 334 (362)
Q Consensus 269 ~~~~----~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~---~-----~~v~~ 334 (362)
-+.. ....-++|++|.+.+ |..+.- ...-. -.+ ..+. ..+...+..++||+.++. . ..+++
T Consensus 334 ~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~-dt~~d--GGP~~vfD--HqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYa 408 (723)
T KOG2437|consen 334 LDSSVRNSKSLRSDFWRFDIDTNTWMLLSE-DTAAD--GGPKLVFD--HQMCVDSEKHMIYVFGGRILTCNEPQFSGLYA 408 (723)
T ss_pred cccccccccccccceEEEecCCceeEEecc-ccccc--CCcceeec--ceeeEecCcceEEEecCeeccCCCccccceEE
Confidence 5422 234568999987765 997632 11100 000 0011 122223555678888642 1 24899
Q ss_pred EECCCCceEEcCC
Q 018005 335 YNVARRTWHWLPS 347 (362)
Q Consensus 335 yd~~~~~w~~~~~ 347 (362)
||.....|+-+.-
T Consensus 409 f~~~~~~w~~l~e 421 (723)
T KOG2437|consen 409 FNCQCQTWKLLRE 421 (723)
T ss_pred EecCCccHHHHHH
Confidence 9999999987643
No 56
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.54 E-value=0.99 Score=39.12 Aligned_cols=151 Identities=13% Similarity=0.019 Sum_probs=82.5
Q ss_pred EEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCC-cccEEECCEEEEEecCCcEEEEEEcCCCee-ecCCCC
Q 018005 158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH-QEGVFYKGSLYFTTPEPFSIVRFDLENGIW-ETPNDA 235 (362)
Q Consensus 158 kv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~-~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w-~~~~~p 235 (362)
.++.-.|..+...+..||..+++=.... .+|. ++. -..+.+++++|.++.+....++||..+-+- ....
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~~~~~--~l~~-----~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-- 127 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKVLQSV--PLPP-----RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP-- 127 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSEEEEE--E-TT-----T--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE--
T ss_pred EEEEeCCCCCcEEEEEEECCCCcEEEEE--ECCc-----cccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe--
Confidence 4555444445568999999998654433 3443 233 345677999999999888999999986322 2211
Q ss_pred CcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEE
Q 018005 236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC 315 (362)
Q Consensus 236 ~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~ 315 (362)
.+ .+...|.. -+..|++-.| ... ++.+|+.+ .+.+.++.... .+......+.+.+
T Consensus 128 -------y~--~EGWGLt~---dg~~Li~SDG------S~~--L~~~dP~~-f~~~~~i~V~~----~g~pv~~LNELE~ 182 (264)
T PF05096_consen 128 -------YP--GEGWGLTS---DGKRLIMSDG------SSR--LYFLDPET-FKEVRTIQVTD----NGRPVSNLNELEY 182 (264)
T ss_dssp --------S--SS--EEEE---CSSCEEEE-S------SSE--EEEE-TTT--SEEEEEE-EE----TTEE---EEEEEE
T ss_pred -------cC--CcceEEEc---CCCEEEEECC------ccc--eEEECCcc-cceEEEEEEEE----CCEECCCcEeEEE
Confidence 23 24456652 3444665554 233 44455433 33333332110 0001112344555
Q ss_pred EeeCCEEEEEeecCCeEEEEECCCCceEE
Q 018005 316 FWHQGMICVCCYTWPEILYYNVARRTWHW 344 (362)
Q Consensus 316 ~~~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (362)
+ ++.||.--..++.|+.-|+++++-..
T Consensus 183 i--~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 183 I--NGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp E--TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred E--cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 4 67888877778889999999987665
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.43 E-value=2.8 Score=35.67 Aligned_cols=187 Identities=14% Similarity=0.166 Sum_probs=97.1
Q ss_pred CCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCC--cccc-cc
Q 018005 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ--SWSK-FD 185 (362)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~--~W~~-~~ 185 (362)
.+|.+++.. ..+.++.+|+.|++-..--..+.+..... ..... ++++.. ....+..+|..++ .|+. ..
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~----~v~v~~---~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGG----RVYVGT---SDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETT----EEEEEE---TTSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEeecccccccee-eeccc----cccccc---ceeeeEecccCCcceeeeeccc
Confidence 566666663 36889999999998433222222211111 12211 444433 2237888886665 5984 43
Q ss_pred cCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCCccc--------ccceeec
Q 018005 186 IDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHELT--------FFRLVND 255 (362)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~~~~--------~~~lv~~ 255 (362)
..+. ..........+.++.+|+.... ..+.++|++++ .|..-. . .|.... ...++.
T Consensus 106 --~~~~--~~~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~tG~~~w~~~~-~-------~~~~~~~~~~~~~~~~~~~~- 171 (238)
T PF13360_consen 106 --SSPP--AGVRSSSSPAVDGDRLYVGTSS-GKLVALDPKTGKLLWKYPV-G-------EPRGSSPISSFSDINGSPVI- 171 (238)
T ss_dssp --SSCT--CSTB--SEEEEETTEEEEEETC-SEEEEEETTTTEEEEEEES-S-------TT-SS--EEEETTEEEEEEC-
T ss_pred --cccc--cccccccCceEecCEEEEEecc-CcEEEEecCCCcEEEEeec-C-------CCCCCcceeeecccccceEE-
Confidence 2122 1111223344446677765543 47999999865 565521 2 222111 123332
Q ss_pred ccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEE
Q 018005 256 GEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILY 334 (362)
Q Consensus 256 ~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~ 334 (362)
.+|.+|+.... + ..+.+ ++..... |+.. +. . ........++.+|+.. ..+.+.+
T Consensus 172 --~~~~v~~~~~~---g--~~~~~-d~~tg~~~w~~~--~~-------------~-~~~~~~~~~~~l~~~~-~~~~l~~ 226 (238)
T PF13360_consen 172 --SDGRVYVSSGD---G--RVVAV-DLATGEKLWSKP--IS-------------G-IYSLPSVDGGTLYVTS-SDGRLYA 226 (238)
T ss_dssp --CTTEEEEECCT---S--SEEEE-ETTTTEEEEEEC--SS---------------ECECEECCCTEEEEEE-TTTEEEE
T ss_pred --ECCEEEEEcCC---C--eEEEE-ECCCCCEEEEec--CC-------------C-ccCCceeeCCEEEEEe-CCCEEEE
Confidence 46777776541 1 22344 5532222 8422 21 0 0111345678888877 6789999
Q ss_pred EECCCCceE
Q 018005 335 YNVARRTWH 343 (362)
Q Consensus 335 yd~~~~~w~ 343 (362)
+|+++++-.
T Consensus 227 ~d~~tG~~~ 235 (238)
T PF13360_consen 227 LDLKTGKVV 235 (238)
T ss_dssp EETTTTEEE
T ss_pred EECCCCCEE
Confidence 999998544
No 58
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=94.43 E-value=0.17 Score=31.46 Aligned_cols=28 Identities=18% Similarity=-0.046 Sum_probs=22.6
Q ss_pred CeEEEEeCCcCceeeccCCCCCCccceE
Q 018005 121 SSFLVCNLVTLSSRTIDFPTYPFDFELL 148 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~ 148 (362)
+.++++|+.+++|.+++.+|.++..+.+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~ 46 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGHTA 46 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccceEE
Confidence 5789999999999999887776655443
No 59
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=93.89 E-value=2.5 Score=36.05 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=74.0
Q ss_pred ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecC----CCC-eEEEEeCCcCceee-ccCCCCCC-ccceE
Q 018005 76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP----SSS-SFLVCNLVTLSSRT-IDFPTYPF-DFELL 148 (362)
Q Consensus 76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~----~~~-~~~v~NP~t~~w~~-lP~~~~~~-~~~~~ 148 (362)
..+..|+..+++|..+..+......... -...+|.++.... ... .+..+|..+.+|.. +|.|.... .....
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~--~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~ 147 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSR--GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYL 147 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCC--eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccce
Confidence 3567899999999988632111111111 2345775544321 112 68889999999994 76553321 11111
Q ss_pred EEEeCCCceEEEEEeeecCCCeEEEEeCC---CCcccccccCCCCc-cccccCCCcccEEECCEEEEEecC--CcEEEEE
Q 018005 149 TLVSTPSGYKIFMLFAKSFPNYAFVYDST---DQSWSKFDIDGFPS-MILSQSSHQEGVFYKGSLYFTTPE--PFSIVRF 222 (362)
Q Consensus 149 ~~~~~~~~ykv~~~~~~~~~~~~~vy~s~---~~~W~~~~~~~~p~-~~~~~~~~~~~v~~~G~ly~~~~~--~~~i~~~ 222 (362)
.+..-. .++..+........++++-.+ .+.|+..-...++. ..........++..+|.+...... ...++.|
T Consensus 148 ~L~~~~--G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y 225 (230)
T TIGR01640 148 SLINYK--GKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYY 225 (230)
T ss_pred EEEEEC--CEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEE
Confidence 222111 134433332222335665553 56797543112211 011111112345567888877654 3348899
Q ss_pred EcCCC
Q 018005 223 DLENG 227 (362)
Q Consensus 223 D~~~~ 227 (362)
|++++
T Consensus 226 ~~~~~ 230 (230)
T TIGR01640 226 NVGEN 230 (230)
T ss_pred eccCC
Confidence 98763
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.76 E-value=1.7 Score=39.76 Aligned_cols=134 Identities=11% Similarity=0.042 Sum_probs=74.5
Q ss_pred CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccc-----eEEEE
Q 018005 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIST-----TMKLW 280 (362)
Q Consensus 206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~-----~i~vw 280 (362)
+.+|..+.... ..++||+++...... |. ++......-.+ . .+|+||++.......... .+++.
T Consensus 76 gskIv~~d~~~-~t~vyDt~t~av~~~--P~------l~~pk~~pisv-~--VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 76 GSKIVAVDQSG-RTLVYDTDTRAVATG--PR------LHSPKRCPISV-S--VGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred CCeEEEEcCCC-CeEEEECCCCeEecc--CC------CCCCCcceEEE-E--eCCeEEEeeccCccccccCccceeEEEe
Confidence 56777665544 478899999887753 31 33322233233 3 789999998864321111 66666
Q ss_pred EECC-------CCC--EEEEecccHHHHHHhhhccccCC-ccEEEEeeCCEEEEEeec-CCeEEEEECCCCceEEc--CC
Q 018005 281 ELGC-------GGN--WIEVERVPEMMCRKFMSVCYHNY-DHVYCFWHQGMICVCCYT-WPEILYYNVARRTWHWL--PS 347 (362)
Q Consensus 281 ~l~~-------~~~--W~~v~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~-~~~v~~yd~~~~~w~~~--~~ 347 (362)
..+. ... |..+.. ..+..... .... ...+++.+|..|++.... ....++||..+++|+++ =.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~--~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~ 218 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPP---PPFVRDRR--YSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWM 218 (342)
T ss_pred ccccccccccCCCcceEEcCCC---CCccccCC--cccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecccee
Confidence 4431 112 776443 22211110 0000 112233346788886432 12589999999999998 56
Q ss_pred CCCCCCCCC
Q 018005 348 CPSLPHKWS 356 (362)
Q Consensus 348 ~~~~~~~~~ 356 (362)
+||.+...+
T Consensus 219 LPF~G~a~y 227 (342)
T PF07893_consen 219 LPFHGQAEY 227 (342)
T ss_pred cCcCCccEE
Confidence 777665544
No 61
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.35 E-value=3 Score=38.14 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=68.5
Q ss_pred eEEEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCC--C------eEEEE
Q 018005 103 ATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFP--N------YAFVY 174 (362)
Q Consensus 103 ~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~--~------~~~vy 174 (362)
+.+.+..+..|+.... .....+||+.|..-..+|.+..+.... +.+.. ++ +++++...... . .+|++
T Consensus 69 ~~F~al~gskIv~~d~-~~~t~vyDt~t~av~~~P~l~~pk~~p-isv~V-G~--~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 69 MDFFALHGSKIVAVDQ-SGRTLVYDTDTRAVATGPRLHSPKRCP-ISVSV-GD--KLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred eEEEEecCCeEEEEcC-CCCeEEEECCCCeEeccCCCCCCCcce-EEEEe-CC--eEEEeeccCccccccCccceeEEEe
Confidence 3344443344433332 367999999999999999877654443 22221 11 47776654211 0 44554
Q ss_pred --e--------CCCCcccccccCCCCccccccCC----CcccEEECCEEEEEecCCc--EEEEEEcCCCeeecC
Q 018005 175 --D--------STDQSWSKFDIDGFPSMILSQSS----HQEGVFYKGSLYFTTPEPF--SIVRFDLENGIWETP 232 (362)
Q Consensus 175 --~--------s~~~~W~~~~~~~~p~~~~~~~~----~~~~v~~~G~ly~~~~~~~--~i~~~D~~~~~w~~~ 232 (362)
+ .++-.|+.++ . |+....... ...-++++|.-.|+...+. .-.+||+.+.+|+..
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP--~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLP--P-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred ccccccccccCCCcceEEcCC--C-CCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 4 1233577776 3 331111111 2223344787777755443 679999999999986
No 62
>PLN02772 guanylate kinase
Probab=93.18 E-value=0.66 Score=42.71 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=50.6
Q ss_pred CCcccEEECCEEEEEecCC------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC
Q 018005 198 SHQEGVFYKGSLYFTTPEP------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (362)
Q Consensus 198 ~~~~~v~~~G~ly~~~~~~------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~ 271 (362)
..+.++.+++++|+.++.. ..+.+||..+.+|.....-+. .|..+..++.++. -+++|+|+....
T Consensus 26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~-----~P~~r~GhSa~v~--~~~rilv~~~~~-- 96 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGT-----GPKPCKGYSAVVL--NKDRILVIKKGS-- 96 (398)
T ss_pred CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCC-----CCCCCCcceEEEE--CCceEEEEeCCC--
Confidence 3567899999999998632 368999999999987532211 3444444433322 589999998732
Q ss_pred CccceEEEEEECCC
Q 018005 272 GISTTMKLWELGCG 285 (362)
Q Consensus 272 ~~~~~i~vw~l~~~ 285 (362)
...-.+|-|+-+
T Consensus 97 --~~~~~~w~l~~~ 108 (398)
T PLN02772 97 --APDDSIWFLEVD 108 (398)
T ss_pred --CCccceEEEEcC
Confidence 233567777533
No 63
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.07 E-value=0.95 Score=38.93 Aligned_cols=88 Identities=8% Similarity=0.025 Sum_probs=56.1
Q ss_pred CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec-CCCeEEEEeCCC----CcccccccCCCCccccc
Q 018005 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-FPNYAFVYDSTD----QSWSKFDIDGFPSMILS 195 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~-~~~~~~vy~s~~----~~W~~~~~~~~p~~~~~ 195 (362)
..-.+|||.|++++.++......+..+. +..+ .+++.+||.. ....+.+|++.+ ..|.+... .|.. .
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~-~L~d---G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~-~m~~---~ 117 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGA-FLPD---GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN-DMQS---G 117 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcC-CCCC---CCEEEeCCCCccccceEEEecCCCCCCCCceECcc-cccC---C
Confidence 4568899999999988765433333221 2222 3677777754 345788898865 67887762 2332 2
Q ss_pred cCCCcccEEECCEEEEEecCC
Q 018005 196 QSSHQEGVFYKGSLYFTTPEP 216 (362)
Q Consensus 196 ~~~~~~~v~~~G~ly~~~~~~ 216 (362)
+.+....+.-||++.++++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CccccceECCCCCEEEEeCcC
Confidence 334444455599999998865
No 64
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.74 E-value=8.5 Score=35.89 Aligned_cols=187 Identities=11% Similarity=0.119 Sum_probs=97.1
Q ss_pred CCceEEEecCCCCeEEEEeCCcCc--eeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc--cccc
Q 018005 109 SKGLLCFSLPSSSSFLVCNLVTLS--SRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSKF 184 (362)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~--w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~--W~~~ 184 (362)
.+|.|++.. .++.++.+|+.|++ |..-... .....+. +.. -+|++.. ....++.+|.++++ |+..
T Consensus 119 ~~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~--v~~----~~v~v~~---~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 119 AGGKVYIGS-EKGQVYALNAEDGEVAWQTKVAG-EALSRPV--VSD----GLVLVHT---SNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred ECCEEEEEc-CCCEEEEEECCCCCCcccccCCC-ceecCCE--EEC----CEEEEEC---CCCEEEEEEccCCCEeeeec
Confidence 466666654 35689999999998 5432111 0011111 111 1344322 23478889987765 8876
Q ss_pred ccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecC-CCCC-c-ccccCCCCcccccceeecccCC
Q 018005 185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETP-NDAN-D-HMTMMLPHELTFFRLVNDGEES 259 (362)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~-~~p~-~-~~~~~~p~~~~~~~lv~~~~~~ 259 (362)
. ..|. ...+....++..+|.+|+....+ .+.++|+++. .|+.- ..|. . .... +. ......++ .+
T Consensus 188 ~--~~~~--~~~~~~~sP~v~~~~v~~~~~~g-~v~a~d~~~G~~~W~~~~~~~~~~~~~~~-~~-~~~~sP~v----~~ 256 (394)
T PRK11138 188 L--DVPS--LTLRGESAPATAFGGAIVGGDNG-RVSAVLMEQGQLIWQQRISQPTGATEIDR-LV-DVDTTPVV----VG 256 (394)
T ss_pred C--CCCc--ccccCCCCCEEECCEEEEEcCCC-EEEEEEccCChhhheeccccCCCccchhc-cc-ccCCCcEE----EC
Confidence 5 3332 11112345677788888766554 6889999865 57641 1110 0 0000 00 00112233 57
Q ss_pred CeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECC
Q 018005 260 NKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVA 338 (362)
Q Consensus 260 G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~ 338 (362)
|.||+... ...+...+....+. |+.- .+ .... .+..++.||+.. ..+.+++.|.+
T Consensus 257 ~~vy~~~~------~g~l~ald~~tG~~~W~~~--~~-------------~~~~--~~~~~~~vy~~~-~~g~l~ald~~ 312 (394)
T PRK11138 257 GVVYALAY------NGNLVALDLRSGQIVWKRE--YG-------------SVND--FAVDGGRIYLVD-QNDRVYALDTR 312 (394)
T ss_pred CEEEEEEc------CCeEEEEECCCCCEEEeec--CC-------------CccC--cEEECCEEEEEc-CCCeEEEEECC
Confidence 88887654 13444444432222 8742 11 0011 234567888865 45689999998
Q ss_pred CCc
Q 018005 339 RRT 341 (362)
Q Consensus 339 ~~~ 341 (362)
+++
T Consensus 313 tG~ 315 (394)
T PRK11138 313 GGV 315 (394)
T ss_pred CCc
Confidence 874
No 65
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=91.61 E-value=0.35 Score=45.11 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=88.7
Q ss_pred EeCCcCceeeccCCCC--------CCccceEEEEeCCCceEEEEEeeecCCC---eEEEEeCCCCcccccccCC-CCccc
Q 018005 126 CNLVTLSSRTIDFPTY--------PFDFELLTLVSTPSGYKIFMLFAKSFPN---YAFVYDSTDQSWSKFDIDG-FPSMI 193 (362)
Q Consensus 126 ~NP~t~~w~~lP~~~~--------~~~~~~~~~~~~~~~ykv~~~~~~~~~~---~~~vy~s~~~~W~~~~~~~-~p~~~ 193 (362)
=-|.+-.|.++|+-.. +-.+.+.-++.....-.|+..||..+.. .+..|..+.+.|....... .|.
T Consensus 234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG-- 311 (723)
T KOG2437|consen 234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPG-- 311 (723)
T ss_pred cccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCc--
Confidence 3466777888876531 1123344444333444788887765433 6788999999998876311 222
Q ss_pred cccCCCcccEEECC--EEEEEecC-----------CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCC
Q 018005 194 LSQSSHQEGVFYKG--SLYFTTPE-----------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESN 260 (362)
Q Consensus 194 ~~~~~~~~~v~~~G--~ly~~~~~-----------~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G 260 (362)
.+.-++.|..-. ++|.++.. +..+..||.+++.|..+... +.-++ -|.....+.+++. +-+|
T Consensus 312 --~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d-t~~dG-GP~~vfDHqM~Vd-~~k~ 386 (723)
T KOG2437|consen 312 --ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED-TAADG-GPKLVFDHQMCVD-SEKH 386 (723)
T ss_pred --chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccc-ccccC-CcceeecceeeEe-cCcc
Confidence 223345555433 88888641 23589999999999886422 00001 2333445666641 1344
Q ss_pred eEEEEEEeecCCcc-ceEEEEEECCCCC-EEEE
Q 018005 261 KLYLIGGVGRNGIS-TTMKLWELGCGGN-WIEV 291 (362)
Q Consensus 261 ~L~vv~~~~~~~~~-~~i~vw~l~~~~~-W~~v 291 (362)
-|||.||.--+... .--.+|-++-.+. |...
T Consensus 387 ~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 387 MIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred eEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 49999885432221 1123444454454 7754
No 66
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.12 E-value=11 Score=33.94 Aligned_cols=195 Identities=10% Similarity=0.038 Sum_probs=89.4
Q ss_pred EEecCCCCeEEEEeCCc-CceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCC-CCcccccccCCCCc
Q 018005 114 CFSLPSSSSFLVCNLVT-LSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST-DQSWSKFDIDGFPS 191 (362)
Q Consensus 114 ~~~~~~~~~~~v~NP~t-~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~-~~~W~~~~~~~~p~ 191 (362)
|+....++.+.+|+..+ ++...+...+.......+++.+.+. .+++... ....+.+|+.. ++++.... ..+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~--~lyv~~~--~~~~i~~~~~~~~g~l~~~~--~~~~ 78 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKR--HLYVGVR--PEFRVLSYRIADDGALTFAA--ESPL 78 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCC--EEEEEEC--CCCcEEEEEECCCCceEEee--eecC
Confidence 44433456677777753 4444333222111122334443321 3333322 23567777775 45665444 2221
Q ss_pred cccccCCCcccEEE--CCE-EEEEecCCcEEEEEEcCCCe-ee-cCCCCCcccccCCCCcccccceeecccCCCeEEEEE
Q 018005 192 MILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGI-WE-TPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIG 266 (362)
Q Consensus 192 ~~~~~~~~~~~v~~--~G~-ly~~~~~~~~i~~~D~~~~~-w~-~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~ 266 (362)
. .....+.+ +|+ +|........+.+||+.++. .. .+. . .+.....+.+... -+|+..++.
T Consensus 79 ---~--~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~-------~~~~~~~~~~~~~--p~g~~l~v~ 143 (330)
T PRK11028 79 ---P--GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ-I-------IEGLEGCHSANID--PDNRTLWVP 143 (330)
T ss_pred ---C--CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee-e-------ccCCCcccEeEeC--CCCCEEEEe
Confidence 0 11223333 465 55544445678999986431 11 111 0 1111111222212 466544443
Q ss_pred EeecCCccceEEEEEECCCCCEEEE----ecccHHHHHHhhhccccCCccEEEE-eeCCEEEEEeecCCeEEEEECC--C
Q 018005 267 GVGRNGISTTMKLWELGCGGNWIEV----ERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVA--R 339 (362)
Q Consensus 267 ~~~~~~~~~~i~vw~l~~~~~W~~v----~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~~--~ 339 (362)
. .....+.||+++..+.-... .+++. +.......+ .++..+|+.....+.+.+||++ +
T Consensus 144 ~----~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-----------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~ 208 (330)
T PRK11028 144 C----LKEDRIRLFTLSDDGHLVAQEPAEVTTVE-----------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH 208 (330)
T ss_pred e----CCCCEEEEEEECCCCcccccCCCceecCC-----------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 3 23578999999753332211 01110 111111222 3456788877667889999987 3
Q ss_pred CceEE
Q 018005 340 RTWHW 344 (362)
Q Consensus 340 ~~w~~ 344 (362)
++.+.
T Consensus 209 ~~~~~ 213 (330)
T PRK11028 209 GEIEC 213 (330)
T ss_pred CCEEE
Confidence 45444
No 67
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=90.45 E-value=13 Score=33.53 Aligned_cols=224 Identities=9% Similarity=0.012 Sum_probs=108.8
Q ss_pred EEecCCc-eEEEecCCCCeEEEEeCCcCc-e-eeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCC-Cc
Q 018005 105 LLSSSKG-LLCFSLPSSSSFLVCNLVTLS-S-RTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD-QS 180 (362)
Q Consensus 105 ~~~s~~G-ll~~~~~~~~~~~v~NP~t~~-w-~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~-~~ 180 (362)
+..+.+| .+++....++.+.+|+..+.. . ..+...+.......+++.+++ . .+++... ....+.+||..+ +.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g-~-~l~v~~~--~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN-R-TLWVPCL--KEDRIRLFTLSDDGH 160 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCC-C-EEEEeeC--CCCEEEEEEECCCCc
Confidence 3344444 666665446788888875421 1 111111111112233343332 2 2333222 345889999876 32
Q ss_pred cccccc--CCCCccccccCCCcccEEE-CC-EEEEEecCCcEEEEEEcC--CCeeecCC-CCCcccccCCCCcc----cc
Q 018005 181 WSKFDI--DGFPSMILSQSSHQEGVFY-KG-SLYFTTPEPFSIVRFDLE--NGIWETPN-DANDHMTMMLPHEL----TF 249 (362)
Q Consensus 181 W~~~~~--~~~p~~~~~~~~~~~~v~~-~G-~ly~~~~~~~~i~~~D~~--~~~w~~~~-~p~~~~~~~~p~~~----~~ 249 (362)
-..... ...+. .......++. +| .+|........+.+||.. +++++.+. ... +|... ..
T Consensus 161 l~~~~~~~~~~~~----g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~ 230 (330)
T PRK11028 161 LVAQEPAEVTTVE----GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM------MPADFSDTRWA 230 (330)
T ss_pred ccccCCCceecCC----CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec------CCCcCCCCccc
Confidence 221100 01111 1111122333 34 566666656689999986 34443321 010 22211 11
Q ss_pred cceeecccCCCe-EEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEee
Q 018005 250 FRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY 327 (362)
Q Consensus 250 ~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 327 (362)
..+... -+|+ ||+... ....+.+|+++.++. ++.+..++... . . ..+..-..+..+|+...
T Consensus 231 ~~i~~~--pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~~~~~~----~-----p-~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 231 ADIHIT--PDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGHQPTET----Q-----P-RGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred eeEEEC--CCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEEEeccc----c-----C-CceEECCCCCEEEEEEc
Confidence 112211 4566 555422 347899999976653 77776654221 0 0 12222245678888776
Q ss_pred cCCeEEEEEC--CCCceEEcCCCCCCCCCCCcce
Q 018005 328 TWPEILYYNV--ARRTWHWLPSCPSLPHKWSCGF 359 (362)
Q Consensus 328 ~~~~v~~yd~--~~~~w~~~~~~~~~~~~~~~~~ 359 (362)
..+.+.+|+. +++.++.+...+.......+.|
T Consensus 294 ~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 294 KSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred cCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 6677888865 5678888877666555544433
No 68
>PF13854 Kelch_5: Kelch motif
Probab=89.84 E-value=0.54 Score=28.06 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=23.0
Q ss_pred CCcccccceeecccCCCeEEEEEEeecCCccceEEEEEEC
Q 018005 244 PHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (362)
Q Consensus 244 p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~ 283 (362)
|..+..+..+. .+++||+.||.........-++|.|+
T Consensus 2 P~~R~~hs~~~---~~~~iyi~GG~~~~~~~~~~d~~~l~ 38 (42)
T PF13854_consen 2 PSPRYGHSAVV---VGNNIYIFGGYSGNNNSYSNDLYVLD 38 (42)
T ss_pred CCCccceEEEE---ECCEEEEEcCccCCCCCEECcEEEEE
Confidence 44455566663 78999999997631122334677775
No 69
>smart00284 OLF Olfactomedin-like domains.
Probab=89.47 E-value=13 Score=32.21 Aligned_cols=133 Identities=19% Similarity=0.224 Sum_probs=75.7
Q ss_pred CCcccEEECCEEEEEecCCcEEEEEEcCCCeeecC-CCCCcccccCCCC---cccccceeecccCCCeEEEEEEeecCCc
Q 018005 198 SHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP-NDANDHMTMMLPH---ELTFFRLVNDGEESNKLYLIGGVGRNGI 273 (362)
Q Consensus 198 ~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~-~~p~~~~~~~~p~---~~~~~~lv~~~~~~G~L~vv~~~~~~~~ 273 (362)
....-|+.||.+|+-......|+.||+.+++-... ..|.--.....|- +....-+.+ =+..|.+|-... ..
T Consensus 75 ~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAv---DE~GLWvIYat~--~~ 149 (255)
T smart00284 75 QGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAV---DENGLWVIYATE--QN 149 (255)
T ss_pred ccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEE---cCCceEEEEecc--CC
Confidence 34567888999999876666899999999877421 2221000000111 122344553 467799887743 23
Q ss_pred cceEEEEEECCCC-----CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEee-c--CCe-EEEEECCCCceEE
Q 018005 274 STTMKLWELGCGG-----NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY-T--WPE-ILYYNVARRTWHW 344 (362)
Q Consensus 274 ~~~i~vw~l~~~~-----~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~-v~~yd~~~~~w~~ 344 (362)
...|.|=+||+.+ +|.- ..+. ...-.++...|.+|+... . ..+ ..+||..+++- .
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T--~~~k-------------~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~-~ 213 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWIT--TYNK-------------RSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKE-G 213 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEc--CCCc-------------ccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCcc-c
Confidence 3667777887654 2763 2221 111234445577887752 1 112 58999998863 3
Q ss_pred cCCCCCC
Q 018005 345 LPSCPSL 351 (362)
Q Consensus 345 ~~~~~~~ 351 (362)
.+..|+.
T Consensus 214 ~~~i~f~ 220 (255)
T smart00284 214 HLDIPFE 220 (255)
T ss_pred eeeeeec
Confidence 4556654
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.40 E-value=17 Score=33.42 Aligned_cols=181 Identities=14% Similarity=0.168 Sum_probs=88.7
Q ss_pred CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCC---CcccccccCCCCccccccC
Q 018005 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD---QSWSKFDIDGFPSMILSQS 197 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~---~~W~~~~~~~~p~~~~~~~ 197 (362)
..+..||..|++-..+=+-........-+..++ .++++ .|+ ....+..+|... +.|+-.. .|.
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V-~Gs--~dr~i~~wdlDgn~~~~W~gvr---~~~------ 356 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFV-TGS--PDRTIIMWDLDGNILGNWEGVR---DPK------ 356 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccC--CceeE-ecC--CCCcEEEecCCcchhhcccccc---cce------
Confidence 456778888887554322221111111122222 23322 222 124566666643 6787664 232
Q ss_pred CCcccEEECCEEEEEecCCcEEEEEEcCCCeee-cCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccce
Q 018005 198 SHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTT 276 (362)
Q Consensus 198 ~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~-~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~ 276 (362)
...-++..+|+-..+......+..|+.++..=. .+. .-.......+. -+|++.++.. ....
T Consensus 357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis---------e~~~its~~iS----~d~k~~LvnL-----~~qe 418 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS---------EEQPITSFSIS----KDGKLALVNL-----QDQE 418 (519)
T ss_pred eEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc---------ccCceeEEEEc----CCCcEEEEEc-----ccCe
Confidence 122234446643333333335777776653222 211 11122233443 6899999876 3478
Q ss_pred EEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCC-EEEEEeecCCeEEEEECCCCceEE
Q 018005 277 MKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQG-MICVCCYTWPEILYYNVARRTWHW 344 (362)
Q Consensus 277 i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~v~~yd~~~~~w~~ 344 (362)
+.+|+++ .|..+ .++++..-+.+..-.|+|.+| ..++.+....+|+.||.++++--.
T Consensus 419 i~LWDl~---e~~lv--------~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 419 IHLWDLE---ENKLV--------RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA 476 (519)
T ss_pred eEEeecc---hhhHH--------HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence 9999885 23322 234443222333345665554 333433344578888887765443
No 71
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.56 E-value=19 Score=32.84 Aligned_cols=248 Identities=13% Similarity=0.105 Sum_probs=114.8
Q ss_pred eeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecC---CCCeEEE--EeCCcCceeeccCCCC-CCccceEEEEe
Q 018005 79 PLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP---SSSSFLV--CNLVTLSSRTIDFPTY-PFDFELLTLVS 152 (362)
Q Consensus 79 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~---~~~~~~v--~NP~t~~w~~lP~~~~-~~~~~~~~~~~ 152 (362)
..||...+.+..+..- ..........+...+..||.... ....+.. .++.+++...+...+. ...-+.+++++
T Consensus 18 ~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~ 96 (345)
T PF10282_consen 18 FRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP 96 (345)
T ss_dssp EEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT
T ss_pred EEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec
Confidence 3456677776655321 00112233334445556766654 2344444 4555566665544332 12223344433
Q ss_pred CCCceEEEEEeeecCCCeEEEEeCCCC-cccccc-cC----CCCccccccCCCcccEEE--CCE-EEEEecCCcEEEEEE
Q 018005 153 TPSGYKIFMLFAKSFPNYAFVYDSTDQ-SWSKFD-ID----GFPSMILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFD 223 (362)
Q Consensus 153 ~~~~ykv~~~~~~~~~~~~~vy~s~~~-~W~~~~-~~----~~p~~~~~~~~~~~~v~~--~G~-ly~~~~~~~~i~~~D 223 (362)
. ..| +++... ....+.+|+..++ .=.... .. .-|........+...+.. +|+ +|+..-....|.+|+
T Consensus 97 ~-g~~-l~vany--~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 97 D-GRF-LYVANY--GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp T-SSE-EEEEET--TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred C-CCE-EEEEEc--cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 2 233 333332 2356777777653 111110 00 000000001112223333 454 555444456899999
Q ss_pred cCCCe--eecCC-CCCcccccCCCCcccccceeecccCCCe-EEEEEEeecCCccceEEEEEECC-CCCEEEEecccHHH
Q 018005 224 LENGI--WETPN-DANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGC-GGNWIEVERVPEMM 298 (362)
Q Consensus 224 ~~~~~--w~~~~-~p~~~~~~~~p~~~~~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~-~~~W~~v~~~p~~~ 298 (362)
.+.+. ..... .. +|.+..-.+++.- -+|+ +|++.. ...++.++.++. .+.++.+.+++...
T Consensus 173 ~~~~~~~l~~~~~~~-------~~~G~GPRh~~f~--pdg~~~Yv~~e-----~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIK-------VPPGSGPRHLAFS--PDGKYAYVVNE-----LSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp E-TTS-TEEEEEEEE-------CSTTSSEEEEEE---TTSSEEEEEET-----TTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EeCCCceEEEeeccc-------cccCCCCcEEEEc--CCcCEEEEecC-----CCCcEEEEeecccCCceeEEEEeeecc
Confidence 87655 43311 01 3333333334421 4555 666653 568899999973 34566655443110
Q ss_pred HHHhhhccccCCc-cEEEEeeCCEEEEEeecCCeEEEEEC--CCCceEEcCCCC
Q 018005 299 CRKFMSVCYHNYD-HVYCFWHQGMICVCCYTWPEILYYNV--ARRTWHWLPSCP 349 (362)
Q Consensus 299 ~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~v~~yd~--~~~~w~~~~~~~ 349 (362)
. .+.. .... .+..--++..+|+..+..+.|.+|++ ++++.+.+...+
T Consensus 239 ~-~~~~---~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 239 E-GFTG---ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp T-TSCS---SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE
T ss_pred c-cccc---cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe
Confidence 0 1110 0011 11211356789999888889999998 345666654443
No 72
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.21 E-value=16 Score=31.63 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=74.6
Q ss_pred CcccEEECCEEEEEecCCcEEEEEEcCCCeee-cCCCCCcccccCCC---CcccccceeecccCCCeEEEEEEeecCCcc
Q 018005 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDANDHMTMMLP---HELTFFRLVNDGEESNKLYLIGGVGRNGIS 274 (362)
Q Consensus 199 ~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~-~~~~p~~~~~~~~p---~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~ 274 (362)
...-|+.||.+|+-......|+.||+.++.-. ....|.--.....| .+....-+.+ =+..|.+|-.... ..
T Consensus 71 GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~Av---DE~GLWvIYat~~--~~ 145 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAV---DENGLWVIYATED--NN 145 (250)
T ss_pred cCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEE---cCCCEEEEEecCC--CC
Confidence 45667889999999877778999999988666 33333100000011 1112234543 4667888877432 22
Q ss_pred ceEEEEEECCCC-----CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC---Ce-EEEEECCCCceEEc
Q 018005 275 TTMKLWELGCGG-----NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW---PE-ILYYNVARRTWHWL 345 (362)
Q Consensus 275 ~~i~vw~l~~~~-----~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-v~~yd~~~~~w~~~ 345 (362)
..+.|=+||+.. +|.- +++.. ..-.++...|.+|+..... .+ ..+||+.+++-+.
T Consensus 146 g~ivvskld~~tL~v~~tw~T--~~~k~-------------~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~- 209 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNT--SYPKR-------------SAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEED- 209 (250)
T ss_pred CcEEEEeeCcccCceEEEEEe--ccCch-------------hhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceec-
Confidence 457777887654 2762 22211 1123444557777765432 22 4888888876653
Q ss_pred CCCCCC
Q 018005 346 PSCPSL 351 (362)
Q Consensus 346 ~~~~~~ 351 (362)
+..|+.
T Consensus 210 ~~i~f~ 215 (250)
T PF02191_consen 210 VSIPFP 215 (250)
T ss_pred eeeeec
Confidence 445543
No 73
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.09 E-value=22 Score=33.05 Aligned_cols=195 Identities=9% Similarity=0.044 Sum_probs=97.2
Q ss_pred CCceEEEecCCCCeEEEEeCCcCc--eee-ccCCCCC--Cc-----cceEEEEeCCCceEEEEEeeecCCCeEEEEeCCC
Q 018005 109 SKGLLCFSLPSSSSFLVCNLVTLS--SRT-IDFPTYP--FD-----FELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD 178 (362)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~--w~~-lP~~~~~--~~-----~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~ 178 (362)
.+|.|++... .+.++.+|+.|++ |.. ++..... .. .....+.. -+|++.. ....++.+|.++
T Consensus 68 ~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~v~v~~---~~g~l~ald~~t 139 (394)
T PRK11138 68 AYNKVYAADR-AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAG----GKVYIGS---EKGQVYALNAED 139 (394)
T ss_pred ECCEEEEECC-CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEEC----CEEEEEc---CCCEEEEEECCC
Confidence 4667776653 4678889999988 543 2220000 00 00111111 1455422 234688888765
Q ss_pred C--cccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCC--c-ccccc
Q 018005 179 Q--SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPH--E-LTFFR 251 (362)
Q Consensus 179 ~--~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~--~-~~~~~ 251 (362)
+ .|+... +. .....++..+|.+|+..... .+.++|++++ .|+.-. . .|. . .....
T Consensus 140 G~~~W~~~~----~~-----~~~ssP~v~~~~v~v~~~~g-~l~ald~~tG~~~W~~~~-~-------~~~~~~~~~~sP 201 (394)
T PRK11138 140 GEVAWQTKV----AG-----EALSRPVVSDGLVLVHTSNG-MLQALNESDGAVKWTVNL-D-------VPSLTLRGESAP 201 (394)
T ss_pred CCCcccccC----CC-----ceecCCEEECCEEEEECCCC-EEEEEEccCCCEeeeecC-C-------CCcccccCCCCC
Confidence 4 697643 11 12345677899999765544 7999999865 676521 1 111 0 11222
Q ss_pred eeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCC
Q 018005 252 LVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP 330 (362)
Q Consensus 252 lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 330 (362)
++ .+|.+++... ...+.....+.... |+.-...|.... ...+. .. .....+..++.+|+.. ..+
T Consensus 202 ~v----~~~~v~~~~~------~g~v~a~d~~~G~~~W~~~~~~~~~~~-~~~~~--~~-~~~sP~v~~~~vy~~~-~~g 266 (394)
T PRK11138 202 AT----AFGGAIVGGD------NGRVSAVLMEQGQLIWQQRISQPTGAT-EIDRL--VD-VDTTPVVVGGVVYALA-YNG 266 (394)
T ss_pred EE----ECCEEEEEcC------CCEEEEEEccCChhhheeccccCCCcc-chhcc--cc-cCCCcEEECCEEEEEE-cCC
Confidence 33 4566655432 13334444432222 874322111000 00000 00 0011123467788765 356
Q ss_pred eEEEEECCCCc--eEE
Q 018005 331 EILYYNVARRT--WHW 344 (362)
Q Consensus 331 ~v~~yd~~~~~--w~~ 344 (362)
.+.++|+++++ |+.
T Consensus 267 ~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 267 NLVALDLRSGQIVWKR 282 (394)
T ss_pred eEEEEECCCCCEEEee
Confidence 89999999874 665
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.95 E-value=0.27 Score=44.95 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=34.2
Q ss_pred cCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCc
Q 018005 14 SRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSP 50 (362)
Q Consensus 14 ~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~ 50 (362)
-.||.|++.+||+.|..+++++++.+|+.|+....+.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 4699999999999999999999999999999988764
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.89 E-value=11 Score=35.10 Aligned_cols=174 Identities=13% Similarity=0.124 Sum_probs=89.0
Q ss_pred eCCcCceeeccCCCCCC---ccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccc-cccCCCCccccccCCCccc
Q 018005 127 NLVTLSSRTIDFPTYPF---DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK-FDIDGFPSMILSQSSHQEG 202 (362)
Q Consensus 127 NP~t~~w~~lP~~~~~~---~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~-~~~~~~p~~~~~~~~~~~~ 202 (362)
+|.+.-|.+...++... ....+.+.+ ...|.+++.++ ..+.+|++.+..=+. .. .+..-...-.
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp-~~P~d~aVt~S----~rvqly~~~~~~~~k~~s-------rFk~~v~s~~ 75 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSP-KHPYDFAVTSS----VRVQLYSSVTRSVRKTFS-------RFKDVVYSVD 75 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCC-CCCCceEEecc----cEEEEEecchhhhhhhHH-------hhccceeEEE
Confidence 45566676665443222 223344443 23455555443 578999987743222 11 1110011112
Q ss_pred EEECCEEEEEecCCcEEEEEEcCCCee-ecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEE
Q 018005 203 VFYKGSLYFTTPEPFSIVRFDLENGIW-ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWE 281 (362)
Q Consensus 203 v~~~G~ly~~~~~~~~i~~~D~~~~~w-~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~ 281 (362)
.-.+|++...+.....+-+||+.+..- ..+.... .|-. ....-. .++.+++.+. ....+.+|+
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~------apv~--~~~f~~---~d~t~l~s~s-----Dd~v~k~~d 139 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ------APVH--VTKFSP---QDNTMLVSGS-----DDKVVKYWD 139 (487)
T ss_pred eecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc------Ccee--EEEecc---cCCeEEEecC-----CCceEEEEE
Confidence 233799999988776899999665211 1111110 1221 112221 5677777665 237788997
Q ss_pred ECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCC
Q 018005 282 LGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR 340 (362)
Q Consensus 282 l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~ 340 (362)
++... + ...+.. ..++.+ ...+.-..+.|++.+++.+.|-.||.++.
T Consensus 140 ~s~a~--v-~~~l~~--htDYVR-------~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 140 LSTAY--V-QAELSG--HTDYVR-------CGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred cCCcE--E-EEEecC--CcceeE-------eeccccCCCeEEEecCCCceEEEEEeccC
Confidence 75333 3 222210 001111 00111235678888888899999999987
No 76
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.07 E-value=20 Score=31.28 Aligned_cols=139 Identities=18% Similarity=0.079 Sum_probs=73.2
Q ss_pred ceeeeeeCCCCCeE-eecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCcee-eccCCCCCCccceEEEEeC
Q 018005 76 DQYPLYDSTHGTWR-RLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSR-TIDFPTYPFDFELLTLVST 153 (362)
Q Consensus 76 ~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~-~lP~~~~~~~~~~~~~~~~ 153 (362)
+.+..+|+.+++-. ..++|. .....-++..++-|+.....++..++||+.|-+-. .++- +- .+-|+...
T Consensus 68 S~l~~~d~~tg~~~~~~~l~~----~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y---~~--EGWGLt~d 138 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSVPLPP----RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY---PG--EGWGLTSD 138 (264)
T ss_dssp EEEEEEETTTSSEEEEEE-TT----T--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE----SS--S--EEEEC
T ss_pred EEEEEEECCCCcEEEEEECCc----cccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEec---CC--cceEEEcC
Confidence 35667888887654 344442 22233344556666666666788999999875532 2222 21 23333332
Q ss_pred CCceEEEEEeeecCCCeEEEEeCCCCcc-cccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeec
Q 018005 154 PSGYKIFMLFAKSFPNYAFVYDSTDQSW-SKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWET 231 (362)
Q Consensus 154 ~~~ykv~~~~~~~~~~~~~vy~s~~~~W-~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~ 231 (362)
+. .++.-. ++..++..|+++-+= +... +.....+...-..--+++|.+|.-......|+..||++++-..
T Consensus 139 g~--~Li~SD---GS~~L~~~dP~~f~~~~~i~---V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 139 GK--RLIMSD---GSSRLYFLDPETFKEVRTIQ---VTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp SS--CEEEE----SSSEEEEE-TTT-SEEEEEE----EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred CC--EEEEEC---CccceEEECCcccceEEEEE---EEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 22 344322 345788888875321 1111 1111111112344567899999888777889999999986543
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.62 E-value=28 Score=32.64 Aligned_cols=121 Identities=13% Similarity=0.126 Sum_probs=68.9
Q ss_pred ECCEEEEEecCCcEEEEEEcCCC-eeecCCCC-CcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEE
Q 018005 205 YKGSLYFTTPEPFSIVRFDLENG-IWETPNDA-NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWEL 282 (362)
Q Consensus 205 ~~G~ly~~~~~~~~i~~~D~~~~-~w~~~~~p-~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l 282 (362)
.++-+.+.|+....|-.||+... .|.. ... + .|- + .++.. -.|.+.+..+ ...+.||++
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~~~v~-elnhg------~pV--e--~vl~l--psgs~iasAg------Gn~vkVWDl 224 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLTSRVV-ELNHG------CPV--E--SVLAL--PSGSLIASAG------GNSVKVWDL 224 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCCceeE-EecCC------Cce--e--eEEEc--CCCCEEEEcC------CCeEEEEEe
Confidence 35666666766668999999876 4433 111 0 221 1 12211 3556666554 278999999
Q ss_pred CCCCCEEEEecccHHHHHHhhhccccCCccEEEE--eeCCEEEEEeecCCeEEEEECCCCceEEcCCCCCCCCCCCccee
Q 018005 283 GCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFS 360 (362)
Q Consensus 283 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~ 360 (362)
..++. ++..+. .+...+.|. +.++.=.+.+...+.+=+|| +..|+.+.++-++...+||+.+
T Consensus 225 ~~G~q--ll~~~~------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~pvLsiavs 288 (487)
T KOG0310|consen 225 TTGGQ--LLTSMF------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGPVLSIAVS 288 (487)
T ss_pred cCCce--ehhhhh------------cccceEEEEEeecCCceEeecccccceEEEE--ccceEEEEeeecccceeeEEec
Confidence 64442 111110 122233333 22233233444667889999 7788888888888888888753
No 78
>PF13013 F-box-like_2: F-box-like domain
Probab=85.24 E-value=0.78 Score=33.99 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=29.4
Q ss_pred CCCCCCChhhhcCCCHHHHHHHHccCChhhhhhhhccch
Q 018005 3 PKRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCK 41 (362)
Q Consensus 3 ~~~~~~~~~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK 41 (362)
||++...+-...+||+||++.|+..-.-..+......|+
T Consensus 12 ~kp~~~~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 12 PKPPNRQSLTLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred CCCCCccccchhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 444445555678899999999999998877766666665
No 79
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.92 E-value=32 Score=31.70 Aligned_cols=210 Identities=15% Similarity=0.197 Sum_probs=107.2
Q ss_pred eeeeeeCCCCC--eEeecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCc--eeeccCCCCCCccceEEEEe
Q 018005 77 QYPLYDSTHGT--WRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLS--SRTIDFPTYPFDFELLTLVS 152 (362)
Q Consensus 77 ~~~~~d~~~~~--w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~--w~~lP~~~~~~~~~~~~~~~ 152 (362)
.+.++|..+++ |. ..++.. .... .+..++.+++... ++.++.+|+.|++ |..- ...... ....+.
T Consensus 76 ~v~a~d~~tG~~~W~-~~~~~~----~~~~-p~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~--~~~~~~-~~p~v~- 144 (377)
T TIGR03300 76 TVVALDAETGKRLWR-VDLDER----LSGG-VGADGGLVFVGTE-KGEVIALDAEDGKELWRAK--LSSEVL-SPPLVA- 144 (377)
T ss_pred eEEEEEccCCcEeee-ecCCCC----cccc-eEEcCCEEEEEcC-CCEEEEEECCCCcEeeeec--cCceee-cCCEEE-
Confidence 56778876653 53 222211 1111 2334677766543 5788999999988 4432 111100 000011
Q ss_pred CCCceEEEEEeeecCCCeEEEEeCCCC--cccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--e
Q 018005 153 TPSGYKIFMLFAKSFPNYAFVYDSTDQ--SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--I 228 (362)
Q Consensus 153 ~~~~ykv~~~~~~~~~~~~~vy~s~~~--~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~ 228 (362)
.-++++.. ....++.+|..++ .|+... ..+. ........++..+|.+|+-... ..+.++|++++ .
T Consensus 145 ---~~~v~v~~---~~g~l~a~d~~tG~~~W~~~~--~~~~--~~~~~~~sp~~~~~~v~~~~~~-g~v~ald~~tG~~~ 213 (377)
T TIGR03300 145 ---NGLVVVRT---NDGRLTALDAATGERLWTYSR--VTPA--LTLRGSASPVIADGGVLVGFAG-GKLVALDLQTGQPL 213 (377)
T ss_pred ---CCEEEEEC---CCCeEEEEEcCCCceeeEEcc--CCCc--eeecCCCCCEEECCEEEEECCC-CEEEEEEccCCCEe
Confidence 11344322 2346888888765 487654 2221 1111234567778877754433 37899998765 5
Q ss_pred eecCCCCCcccccCCCCc---------ccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHH
Q 018005 229 WETPNDANDHMTMMLPHE---------LTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMM 298 (362)
Q Consensus 229 w~~~~~p~~~~~~~~p~~---------~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~ 298 (362)
|+.- .. .|.+ .....++ .+|.+|+... ...+..++.+..+. |..-. +
T Consensus 214 W~~~-~~-------~~~g~~~~~~~~~~~~~p~~----~~~~vy~~~~------~g~l~a~d~~tG~~~W~~~~--~--- 270 (377)
T TIGR03300 214 WEQR-VA-------LPKGRTELERLVDVDGDPVV----DGGQVYAVSY------QGRVAALDLRSGRVLWKRDA--S--- 270 (377)
T ss_pred eeec-cc-------cCCCCCchhhhhccCCccEE----ECCEEEEEEc------CCEEEEEECCCCcEEEeecc--C---
Confidence 7541 11 1111 0111222 5777777654 24566666643333 87431 0
Q ss_pred HHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCC--ceEE
Q 018005 299 CRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR--TWHW 344 (362)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~--~w~~ 344 (362)
.... .+..++.||+.. ..+.++++|.+++ .|+.
T Consensus 271 ----------~~~~--p~~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 271 ----------SYQG--PAVDDNRLYVTD-ADGVVVALDRRSGSELWKN 305 (377)
T ss_pred ----------CccC--ceEeCCEEEEEC-CCCeEEEEECCCCcEEEcc
Confidence 0011 123467788764 4567999999887 4554
No 80
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=84.64 E-value=27 Score=30.61 Aligned_cols=213 Identities=14% Similarity=0.114 Sum_probs=114.8
Q ss_pred eeCCCCCeEeecCCcCCCCCCceEEEecCCc-eEEEecCCCCeEEEEeCCcCceeeccCCCCC--CccceEEEEeCCCce
Q 018005 81 YDSTHGTWRRLSLPYSLLLPSAATLLSSSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP--FDFELLTLVSTPSGY 157 (362)
Q Consensus 81 ~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~G-ll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~--~~~~~~~~~~~~~~y 157 (362)
.||.++.-...+++... . ....+++-.++ ++|-.+ ..+.-++|.|.+..+.|-+... -+.....|+..+
T Consensus 88 LdP~tGev~~ypLg~Ga-~-Phgiv~gpdg~~Witd~~---~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G--- 159 (353)
T COG4257 88 LDPATGEVETYPLGSGA-S-PHGIVVGPDGSAWITDTG---LAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWG--- 159 (353)
T ss_pred cCCCCCceEEEecCCCC-C-CceEEECCCCCeeEecCc---ceeEEecCcccceEEeecccccCCCcccceeeCCCc---
Confidence 47777777666665321 1 12223444444 344322 3677789999998888755321 122233444332
Q ss_pred EEEEEeeec-------CCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCe
Q 018005 158 KIFMLFAKS-------FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGI 228 (362)
Q Consensus 158 kv~~~~~~~-------~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~ 228 (362)
.+.-.+... ....+++|.. |.+ ....++++ ||.+|+..-..+.|...|+.+..
T Consensus 160 ~lWFt~q~G~yGrLdPa~~~i~vfpa-------------PqG-----~gpyGi~atpdGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 160 NLWFTGQIGAYGRLDPARNVISVFPA-------------PQG-----GGPYGICATPDGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred cEEEeeccccceecCcccCceeeecc-------------CCC-----CCCcceEECCCCcEEEEeccccceEEcccccCC
Confidence 121111100 1224444422 210 12234444 89999886555678889998876
Q ss_pred eecCCCCCcccccCCCCcc--cccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhc
Q 018005 229 WETPNDANDHMTMMLPHEL--TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSV 305 (362)
Q Consensus 229 w~~~~~p~~~~~~~~p~~~--~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~ 305 (362)
=+.+..| ... ....+.+. ..|++.+... ... .+..+|.... |.+.. +|. .
T Consensus 222 aev~p~P---------~~~~~gsRriwsd--pig~~wittw-----g~g--~l~rfdPs~~sW~eyp-LPg-----s--- 274 (353)
T COG4257 222 AEVVPQP---------NALKAGSRRIWSD--PIGRAWITTW-----GTG--SLHRFDPSVTSWIEYP-LPG-----S--- 274 (353)
T ss_pred cceecCC---------CcccccccccccC--ccCcEEEecc-----CCc--eeeEeCcccccceeee-CCC-----C---
Confidence 6665433 331 12333323 5677777744 223 3445566654 88652 221 0
Q ss_pred cccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCceEEcCCC
Q 018005 306 CYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSC 348 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~~~~ 348 (362)
........+...+.+.+.....+.|..||+++-+++.++..
T Consensus 275 --~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 275 --KARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred --CCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCC
Confidence 11112223445578888777788899999999999998653
No 81
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.26 E-value=27 Score=32.24 Aligned_cols=107 Identities=14% Similarity=0.291 Sum_probs=57.8
Q ss_pred cccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceE
Q 018005 200 QEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM 277 (362)
Q Consensus 200 ~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i 277 (362)
..+++.+|.+|..+... .+.+||..++ .|+. . ++..... ..+. .++.+++... ...+
T Consensus 59 ~~p~v~~~~v~v~~~~g-~v~a~d~~tG~~~W~~-~---------~~~~~~~-~p~v---~~~~v~v~~~------~g~l 117 (377)
T TIGR03300 59 LQPAVAGGKVYAADADG-TVVALDAETGKRLWRV-D---------LDERLSG-GVGA---DGGLVFVGTE------KGEV 117 (377)
T ss_pred cceEEECCEEEEECCCC-eEEEEEccCCcEeeee-c---------CCCCccc-ceEE---cCCEEEEEcC------CCEE
Confidence 45677889999776554 7999998754 6765 2 2222111 2332 4666665432 1334
Q ss_pred EEEEECCCCC--EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCc--eEE
Q 018005 278 KLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRT--WHW 344 (362)
Q Consensus 278 ~vw~l~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~--w~~ 344 (362)
..+..+ +++ |+.- ++.+. . ...+..++.+++.. ..+.+.++|+++++ |+.
T Consensus 118 ~ald~~-tG~~~W~~~--~~~~~------------~-~~p~v~~~~v~v~~-~~g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 118 IALDAE-DGKELWRAK--LSSEV------------L-SPPLVANGLVVVRT-NDGRLTALDAATGERLWTY 171 (377)
T ss_pred EEEECC-CCcEeeeec--cCcee------------e-cCCEEECCEEEEEC-CCCeEEEEEcCCCceeeEE
Confidence 444332 333 8743 21100 0 01112456677654 35679999999874 554
No 82
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=83.94 E-value=32 Score=31.00 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=86.9
Q ss_pred CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE-CCE-EEEEecCCcEEEEE--EcCCCeeecCCCCCcccccCC
Q 018005 168 PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KGS-LYFTTPEPFSIVRF--DLENGIWETPNDANDHMTMML 243 (362)
Q Consensus 168 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~-ly~~~~~~~~i~~~--D~~~~~w~~~~~p~~~~~~~~ 243 (362)
...+.+|+..++.=.....-.+++ .......+++ ||+ .|.+.+-..+|.+| |....+++.++.- ..+
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~----G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i-----~tl 236 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKP----GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI-----DTL 236 (346)
T ss_pred CceEEEEEcccCccccccccccCC----CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee-----ccC
Confidence 348889999887765554111221 1112234555 565 47776655566555 5555788776422 115
Q ss_pred CCccc------ccceeecccCCCe-EEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEE
Q 018005 244 PHELT------FFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYC 315 (362)
Q Consensus 244 p~~~~------~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~ 315 (362)
|.+.. ...+. .+|+ ||+... ..+.|.+|..++.+. -+.+...+.+-- .+ ..+..
T Consensus 237 P~dF~g~~~~aaIhis----~dGrFLYasNR-----g~dsI~~f~V~~~~g~L~~~~~~~teg~---~P------R~F~i 298 (346)
T COG2706 237 PEDFTGTNWAAAIHIS----PDGRFLYASNR-----GHDSIAVFSVDPDGGKLELVGITPTEGQ---FP------RDFNI 298 (346)
T ss_pred ccccCCCCceeEEEEC----CCCCEEEEecC-----CCCeEEEEEEcCCCCEEEEEEEeccCCc---CC------cccee
Confidence 65432 23343 6777 455443 346899999988754 444443332110 00 12333
Q ss_pred EeeCCEEEEEeecCCeE--EEEECCCCceEEcCCCCCCCC
Q 018005 316 FWHQGMICVCCYTWPEI--LYYNVARRTWHWLPSCPSLPH 353 (362)
Q Consensus 316 ~~~~~~i~~~~~~~~~v--~~yd~~~~~w~~~~~~~~~~~ 353 (362)
.-.++.+++....++.+ +.=|.+|++..++......++
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~ 338 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPE 338 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCC
Confidence 34567777776666655 444667788888766554443
No 83
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=83.26 E-value=27 Score=29.49 Aligned_cols=187 Identities=13% Similarity=0.111 Sum_probs=90.8
Q ss_pred CeEEEEeCCcCc--eeeccCCCCCCccce-EEEEeCCCceEEEEEeeecCCCeEEEEeCCCC--cccccccCCCCccccc
Q 018005 121 SSFLVCNLVTLS--SRTIDFPTYPFDFEL-LTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ--SWSKFDIDGFPSMILS 195 (362)
Q Consensus 121 ~~~~v~NP~t~~--w~~lP~~~~~~~~~~-~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~--~W~~~~~~~~p~~~~~ 195 (362)
+.+..+|+.|++ |.. .......... ...... . .+++.. ....+..+|..++ .|+... +.
T Consensus 3 g~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~--~-~v~~~~---~~~~l~~~d~~tG~~~W~~~~----~~---- 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSY--DLGPGIGGPVATAVPDG--G-RVYVAS---GDGNLYALDAKTGKVLWRFDL----PG---- 66 (238)
T ss_dssp SEEEEEETTTTEEEEEE--ECSSSCSSEEETEEEET--T-EEEEEE---TTSEEEEEETTTSEEEEEEEC----SS----
T ss_pred CEEEEEECCCCCEEEEE--ECCCCCCCccceEEEeC--C-EEEEEc---CCCEEEEEECCCCCEEEEeec----cc----
Confidence 567889999988 443 2211111111 122111 1 344432 4568899998665 476653 11
Q ss_pred cCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCc
Q 018005 196 QSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI 273 (362)
Q Consensus 196 ~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~ 273 (362)
.....++..+|.+|+..... .+.++|..+. .|+....... . .+ ......... .++.+++...
T Consensus 67 -~~~~~~~~~~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~-~---~~-~~~~~~~~~---~~~~~~~~~~------ 130 (238)
T PF13360_consen 67 -PISGAPVVDGGRVYVGTSDG-SLYALDAKTGKVLWSIYLTSSP-P---AG-VRSSSSPAV---DGDRLYVGTS------ 130 (238)
T ss_dssp -CGGSGEEEETTEEEEEETTS-EEEEEETTTSCEEEEEEE-SSC-T---CS-TB--SEEEE---ETTEEEEEET------
T ss_pred -cccceeeeccccccccccee-eeEecccCCcceeeeecccccc-c---cc-cccccCceE---ecCEEEEEec------
Confidence 11233578889999887555 8999997654 7773111100 0 11 111122221 3344444432
Q ss_pred cceEEEEEECCCCC--EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCc--eEEc
Q 018005 274 STTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRT--WHWL 345 (362)
Q Consensus 274 ~~~i~vw~l~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~--w~~~ 345 (362)
...+..+.++ +++ |..-...+..... .-. ........+..++.||+.... +.++..|.++++ |+..
T Consensus 131 ~g~l~~~d~~-tG~~~w~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~v~~~~~~-g~~~~~d~~tg~~~w~~~ 200 (238)
T PF13360_consen 131 SGKLVALDPK-TGKLLWKYPVGEPRGSSP-ISS---FSDINGSPVISDGRVYVSSGD-GRVVAVDLATGEKLWSKP 200 (238)
T ss_dssp CSEEEEEETT-TTEEEEEEESSTT-SS---EEE---ETTEEEEEECCTTEEEEECCT-SSEEEEETTTTEEEEEEC
T ss_pred cCcEEEEecC-CCcEEEEeecCCCCCCcc-eee---ecccccceEEECCEEEEEcCC-CeEEEEECCCCCEEEEec
Confidence 2444444442 333 7765444321100 000 000112233345678887643 346667999997 7544
No 84
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.20 E-value=34 Score=30.24 Aligned_cols=65 Identities=18% Similarity=0.444 Sum_probs=41.5
Q ss_pred cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCC-ccceEEEEEECCCCCEEEEec
Q 018005 217 FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG-ISTTMKLWELGCGGNWIEVER 293 (362)
Q Consensus 217 ~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~-~~~~i~vw~l~~~~~W~~v~~ 293 (362)
..+..||+.+.+|..+... +-........+ .+.+|++.|...... ....+-.|.++ ..+|..+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~-------i~G~V~~l~~~----~~~~Llv~G~ft~~~~~~~~la~yd~~-~~~w~~~~~ 81 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG-------ISGTVTDLQWA----SNNQLLVGGNFTLNGTNSSNLATYDFK-NQTWSSLGG 81 (281)
T ss_pred CEEEEEECCCCEeecCCCC-------ceEEEEEEEEe----cCCEEEEEEeeEECCCCceeEEEEecC-CCeeeecCC
Confidence 3688899999999975322 22212222222 478898888766544 46678888773 445987654
No 85
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=82.04 E-value=32 Score=29.49 Aligned_cols=68 Identities=16% Similarity=0.171 Sum_probs=43.1
Q ss_pred CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCC
Q 018005 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG 285 (362)
Q Consensus 206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~ 285 (362)
+|.+||+......|..+|+.+++-..+..+ . ...++. ..-+|+|++... ..+.++++ ..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~---------~---~~G~~~-~~~~g~l~v~~~-------~~~~~~d~-~~ 69 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLP---------G---PNGMAF-DRPDGRLYVADS-------GGIAVVDP-DT 69 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESS---------S---EEEEEE-ECTTSEEEEEET-------TCEEEEET-TT
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecC---------C---CceEEE-EccCCEEEEEEc-------CceEEEec-CC
Confidence 599999988777899999999887765533 2 112221 003688887764 33344433 23
Q ss_pred CCEEEEecc
Q 018005 286 GNWIEVERV 294 (362)
Q Consensus 286 ~~W~~v~~~ 294 (362)
++++.+.+.
T Consensus 70 g~~~~~~~~ 78 (246)
T PF08450_consen 70 GKVTVLADL 78 (246)
T ss_dssp TEEEEEEEE
T ss_pred CcEEEEeec
Confidence 457777665
No 86
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.42 E-value=35 Score=34.92 Aligned_cols=32 Identities=19% Similarity=0.440 Sum_probs=25.2
Q ss_pred CcccEEECCEEEEEecCCcEEEEEEcCC--Ceeec
Q 018005 199 HQEGVFYKGSLYFTTPEPFSIVRFDLEN--GIWET 231 (362)
Q Consensus 199 ~~~~v~~~G~ly~~~~~~~~i~~~D~~~--~~w~~ 231 (362)
...++.++|++|..+..+ .+.++|.++ +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~-~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN-KVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCC-eEEEEECCCCcEEEEE
Confidence 456889999999877654 799999885 47875
No 87
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=80.38 E-value=88 Score=33.57 Aligned_cols=165 Identities=13% Similarity=0.129 Sum_probs=83.4
Q ss_pred CCceEEEecCCCCeEEEEeCCcCceeeccCCCCC-------------CccceEEEEeCCCceEEEEEeeecCCCeEEEEe
Q 018005 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP-------------FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYD 175 (362)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~-------------~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~ 175 (362)
.+|.+++.....+.+.++|+.++....+..-... ..-.++++++.+. .+++... ....+.+||
T Consensus 693 ~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--~LYVADs--~n~~Irv~D 768 (1057)
T PLN02919 693 VNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--ELYIADS--ESSSIRALD 768 (1057)
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCC--EEEEEEC--CCCeEEEEE
Confidence 3667777665567899999988876543211100 0011344443322 3454433 346888999
Q ss_pred CCCCccccccc-CC-CCc--ccc---------ccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCc--c
Q 018005 176 STDQSWSKFDI-DG-FPS--MIL---------SQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDAND--H 238 (362)
Q Consensus 176 s~~~~W~~~~~-~~-~p~--~~~---------~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~--~ 238 (362)
..++.-+.... +. .+. ..+ .......++.+ +|.+|+.......|.+||+.+.....+..... .
T Consensus 769 ~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~ 848 (1057)
T PLN02919 769 LKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF 848 (1057)
T ss_pred CCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC
Confidence 87655322110 00 000 000 00112334444 68899888777789999998876654321100 0
Q ss_pred cccC-CCCccc-ccceeecccCCCeEEEEEEeecCCccceEEEEEECC
Q 018005 239 MTMM-LPHELT-FFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (362)
Q Consensus 239 ~~~~-~p~~~~-~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~ 284 (362)
.++. ...... -..+... -+|+|||... ....|.+|.++.
T Consensus 849 ~dG~~~~a~l~~P~GIavd--~dG~lyVaDt-----~Nn~Irvid~~~ 889 (1057)
T PLN02919 849 KDGKALKAQLSEPAGLALG--ENGRLFVADT-----NNSLIRYLDLNK 889 (1057)
T ss_pred CCCcccccccCCceEEEEe--CCCCEEEEEC-----CCCEEEEEECCC
Confidence 0000 000111 1223322 5789988865 346788887754
No 88
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=80.35 E-value=53 Score=31.04 Aligned_cols=166 Identities=11% Similarity=0.103 Sum_probs=87.8
Q ss_pred CccccccccccCCCcceEEEEecCCCCceeeeeeCCCCCeEeecCCcCCC--CCCc--------eEEEecCCc-eEEEec
Q 018005 49 SPSFLSKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLL--LPSA--------ATLLSSSKG-LLCFSL 117 (362)
Q Consensus 49 ~~~F~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~--~~~~--------~~~~~s~~G-ll~~~~ 117 (362)
+..|..-+.++.++-..-+++... ...++|||...+-.++.+.-++. .... ..-.+..+| ++.+..
T Consensus 263 HTnFtdYY~R~~nsDGkrIvFq~~---GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS 339 (668)
T COG4946 263 HTNFTDYYPRNANSDGKRIVFQNA---GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS 339 (668)
T ss_pred cCCchhccccccCCCCcEEEEecC---CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe
Confidence 445666566554443334444432 35778999998877765331111 0000 011233445 332222
Q ss_pred CCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccC
Q 018005 118 PSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQS 197 (362)
Q Consensus 118 ~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~ 197 (362)
.+..++.||--+--.+++...--+ ...+..+ +. .++ + +......+.+|+-+++.=+.... + + .+
T Consensus 340 --RGkaFi~~~~~~~~iqv~~~~~Vr-Y~r~~~~--~e--~~v-i-gt~dgD~l~iyd~~~~e~kr~e~-~-----l-g~ 403 (668)
T COG4946 340 --RGKAFIMRPWDGYSIQVGKKGGVR-YRRIQVD--PE--GDV-I-GTNDGDKLGIYDKDGGEVKRIEK-D-----L-GN 403 (668)
T ss_pred --cCcEEEECCCCCeeEEcCCCCceE-EEEEccC--Cc--ceE-E-eccCCceEEEEecCCceEEEeeC-C-----c-cc
Confidence 356888888888777776542111 1111111 11 222 1 22234488999999887554431 1 1 11
Q ss_pred CCcccEEECCEEEEEecCCcEEEEEEcCCCeeecCC
Q 018005 198 SHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPN 233 (362)
Q Consensus 198 ~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~ 233 (362)
...-.+.-+|+.-+++.+...++++|++++.-+.++
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 222234447887777777778889999888777654
No 89
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=79.01 E-value=75 Score=31.94 Aligned_cols=158 Identities=15% Similarity=0.161 Sum_probs=85.1
Q ss_pred EEecCCceEEEecCCCCeEEEEeCCcCce-eeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCC-Cccc
Q 018005 105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD-QSWS 182 (362)
Q Consensus 105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~w-~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~-~~W~ 182 (362)
.-.+-+|-+...+..++.+-|||-..+.. +......... .++.+... .+.++... -...|..+|... ..-|
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V--t~v~f~~~--g~~llssS---LDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV--TAVQFTAR--GNVLLSSS---LDGTVRAWDLKRYRNFR 428 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCce--EEEEEEec--CCEEEEee---cCCeEEeeeecccceee
Confidence 34566776666776778999999877763 2222211111 11222211 12222211 234666666643 3344
Q ss_pred ccccCCCCccccccCCCcccEEEC--CEEEEEecC-CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCC
Q 018005 183 KFDIDGFPSMILSQSSHQEGVFYK--GSLYFTTPE-PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEES 259 (362)
Q Consensus 183 ~~~~~~~p~~~~~~~~~~~~v~~~--G~ly~~~~~-~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~ 259 (362)
+.. .|. +....++.++ |.+.+.+.. .+.|.+.+.++++--.+-.- .-....+.. + . ..
T Consensus 429 Tft---~P~-----p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-------HEgPVs~l~-f-~--~~ 489 (893)
T KOG0291|consen 429 TFT---SPE-----PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-------HEGPVSGLS-F-S--PD 489 (893)
T ss_pred eec---CCC-----ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-------CCCcceeeE-E-c--cc
Confidence 443 122 2334567777 888887764 46788899998876553211 111111111 2 2 56
Q ss_pred CeEEEEEEeecCCccceEEEEEECCCCCEEEEeccc
Q 018005 260 NKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVP 295 (362)
Q Consensus 260 G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p 295 (362)
|.+.+-+.+ ..++.+|.. -++|..+.+++
T Consensus 490 ~~~LaS~SW-----DkTVRiW~i--f~s~~~vEtl~ 518 (893)
T KOG0291|consen 490 GSLLASGSW-----DKTVRIWDI--FSSSGTVETLE 518 (893)
T ss_pred cCeEEeccc-----cceEEEEEe--eccCceeeeEe
Confidence 776666553 489999965 45577777664
No 90
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=78.68 E-value=41 Score=31.51 Aligned_cols=106 Identities=12% Similarity=0.144 Sum_probs=55.1
Q ss_pred CCE-EEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCC-cccccceeecccCCCeEEEEEEeecCCccceEEEEEEC
Q 018005 206 KGS-LYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (362)
Q Consensus 206 ~G~-ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~-~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~ 283 (362)
+|. ..+.+++...+.+||+.+.+.+.+..|.- ++. ..+...+. .++...++.|. ...|. .|.
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g-----~e~~~~e~FeVS----hd~~fia~~G~-----~G~I~--lLh 331 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYG-----VEEKSMERFEVS----HDSNFIAIAGN-----NGHIH--LLH 331 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCC-----cccchhheeEec----CCCCeEEEccc-----CceEE--eeh
Confidence 676 66666666689999999998888753310 111 11222232 45665555542 23333 333
Q ss_pred CC-CCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCC
Q 018005 284 CG-GNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR 340 (362)
Q Consensus 284 ~~-~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~ 340 (362)
-. +.|.--..|+ +....+....++..|++.+ ..++|+++|++++
T Consensus 332 akT~eli~s~Kie------------G~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 332 AKTKELITSFKIE------------GVVSDFTFSSDSKELLASG-GTGEVYVWNLRQN 376 (514)
T ss_pred hhhhhhhheeeec------------cEEeeEEEecCCcEEEEEc-CCceEEEEecCCc
Confidence 11 2244322222 1111222224445556654 4569999999987
No 91
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=78.56 E-value=44 Score=29.00 Aligned_cols=181 Identities=14% Similarity=0.021 Sum_probs=84.2
Q ss_pred ecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccc
Q 018005 116 SLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILS 195 (362)
Q Consensus 116 ~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~ 195 (362)
....++.+.+||+.|++....-..... ...+.+.+.+. .+++.+. ....+.+||..++..... ++..
T Consensus 6 s~~~d~~v~~~d~~t~~~~~~~~~~~~--~~~l~~~~dg~--~l~~~~~--~~~~v~~~d~~~~~~~~~----~~~~--- 72 (300)
T TIGR03866 6 SNEKDNTISVIDTATLEVTRTFPVGQR--PRGITLSKDGK--LLYVCAS--DSDTIQVIDLATGEVIGT----LPSG--- 72 (300)
T ss_pred EecCCCEEEEEECCCCceEEEEECCCC--CCceEECCCCC--EEEEEEC--CCCeEEEEECCCCcEEEe----ccCC---
Confidence 333456888999988874332221111 12344443322 3444332 345788999887755321 1110
Q ss_pred cCCCcccEEE--CCE-EEEEecCCcEEEEEEcCCCee-ecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC
Q 018005 196 QSSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGIW-ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN 271 (362)
Q Consensus 196 ~~~~~~~v~~--~G~-ly~~~~~~~~i~~~D~~~~~w-~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~ 271 (362)
.....+.+ +|. +|..+.....+..||+.+.+- ..+. ..... ..+... -+|++++++..
T Consensus 73 --~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~---------~~~~~--~~~~~~--~dg~~l~~~~~--- 134 (300)
T TIGR03866 73 --PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP---------VGVEP--EGMAVS--PDGKIVVNTSE--- 134 (300)
T ss_pred --CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee---------CCCCc--ceEEEC--CCCCEEEEEec---
Confidence 00112222 444 555544445799999987532 2211 11111 122212 57877777652
Q ss_pred CccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEe-eCCEEEEEeecCCeEEEEECCCCce
Q 018005 272 GISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVARRTW 342 (362)
Q Consensus 272 ~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~~~w 342 (362)
....+.+|..+ .. ..+..++. ........+. ++..+++.....+.+..||+++.+.
T Consensus 135 -~~~~~~~~d~~-~~--~~~~~~~~-----------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 135 -TTNMAHFIDTK-TY--EIVDNVLV-----------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred -CCCeEEEEeCC-CC--eEEEEEEc-----------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 12334555542 12 22222210 0001112222 3445666554466789999988654
No 92
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=76.38 E-value=5.9 Score=23.09 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=17.8
Q ss_pred cccEEECCEEEEEecCCcEEEEEEcCC
Q 018005 200 QEGVFYKGSLYFTTPEPFSIVRFDLEN 226 (362)
Q Consensus 200 ~~~v~~~G~ly~~~~~~~~i~~~D~~~ 226 (362)
..+++.+|.+|+.+.++ .+.++|+++
T Consensus 15 ~~~~v~~g~vyv~~~dg-~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-EEEEEeCCC
Confidence 45677789999877655 799999864
No 93
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.94 E-value=59 Score=29.10 Aligned_cols=220 Identities=14% Similarity=0.070 Sum_probs=115.4
Q ss_pred eEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEE-eCCCceEEEEEeeec--CCCeEEEEeCCCCccccccc--
Q 018005 112 LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLV-STPSGYKIFMLFAKS--FPNYAFVYDSTDQSWSKFDI-- 186 (362)
Q Consensus 112 ll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~-~~~~~ykv~~~~~~~--~~~~~~vy~s~~~~W~~~~~-- 186 (362)
.+.+.........++|+.+++-...-..+..+.+.+.|.. .++. .++...+.. ....+-|||.. +..+...+
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~--~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~ 95 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGR--LLYTTENDYETGRGVIGVYDAA-RGYRRIGEFP 95 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCC--EEEEeccccCCCcEEEEEEECc-CCcEEEeEec
Confidence 3444444456789999999996543333445555555543 3332 556555432 23488999998 33333330
Q ss_pred -CCCCccccccCC-CcccEEECCEEEEEe--cC--------CcEEEEEEcCCCeeec-CCCCCcccccCCCCc---cccc
Q 018005 187 -DGFPSMILSQSS-HQEGVFYKGSLYFTT--PE--------PFSIVRFDLENGIWET-PNDANDHMTMMLPHE---LTFF 250 (362)
Q Consensus 187 -~~~p~~~~~~~~-~~~~v~~~G~ly~~~--~~--------~~~i~~~D~~~~~w~~-~~~p~~~~~~~~p~~---~~~~ 250 (362)
-++-++++.... ...-|+.||-|.--- ++ +-++.-.|..+.+-.. .. +|.. .+-.
T Consensus 96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~---------Lp~~~~~lSiR 166 (305)
T PF07433_consen 96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE---------LPPDLHQLSIR 166 (305)
T ss_pred CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee---------cCcccccccee
Confidence 012222222111 123445565553221 11 1245556677664322 22 3322 2223
Q ss_pred ceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE-eeCCEEEEEeecC
Q 018005 251 RLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTW 329 (362)
Q Consensus 251 ~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~ 329 (362)
.|... -+|.+.+...+.++.....--|...+.++. .....+|.+....+. .+....++ ..++.|.+.+...
T Consensus 167 HLa~~--~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~-----~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 167 HLAVD--GDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLN-----GYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred eEEec--CCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhC-----CceEEEEEeCCCCEEEEECCCC
Confidence 44433 577777776665432222223333343333 333455655443332 33334444 3456788887777
Q ss_pred CeEEEEECCCCceEEcCCCCCC
Q 018005 330 PEILYYNVARRTWHWLPSCPSL 351 (362)
Q Consensus 330 ~~v~~yd~~~~~w~~~~~~~~~ 351 (362)
+.+.+||..+++|.....+|..
T Consensus 239 g~~~~~d~~tg~~~~~~~l~D~ 260 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVPLPDA 260 (305)
T ss_pred CEEEEEECCCCCEeeccccCce
Confidence 7899999999999998888774
No 94
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=72.99 E-value=1.1e+02 Score=30.86 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=63.8
Q ss_pred CCEEEEEecCCcEEEEEEcCCC-eeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECC
Q 018005 206 KGSLYFTTPEPFSIVRFDLENG-IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (362)
Q Consensus 206 ~G~ly~~~~~~~~i~~~D~~~~-~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~ 284 (362)
+|.+...+.+...+-++|..+. ++-... . ...+....... ..|...+... ...++..|+|..
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFt-e-------Hts~Vt~v~f~----~~g~~llssS-----LDGtVRAwDlkR 423 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSGFCFVTFT-E-------HTSGVTAVQFT----ARGNVLLSSS-----LDGTVRAWDLKR 423 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCceEEEEec-c-------CCCceEEEEEE----ecCCEEEEee-----cCCeEEeeeecc
Confidence 6888877777678888988764 332221 1 22333333332 3555544433 347899999976
Q ss_pred CCCEEEEecccHHHHHHhhhccccCCccEEEEeeC--CEEEEEe-ecCCeEEEEECCCCceEEc
Q 018005 285 GGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQ--GMICVCC-YTWPEILYYNVARRTWHWL 345 (362)
Q Consensus 285 ~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~-~~~~~v~~yd~~~~~w~~~ 345 (362)
..+.+-.. .| ....+.|++.+ |.|++.+ ...-+|++++++|++...+
T Consensus 424 YrNfRTft-~P-------------~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 424 YRNFRTFT-SP-------------EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred cceeeeec-CC-------------CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 66544221 11 23456676554 4444443 3445799999999977664
No 95
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.53 E-value=1.1e+02 Score=31.49 Aligned_cols=91 Identities=14% Similarity=0.231 Sum_probs=45.7
Q ss_pred CeEEEEeC-CCCcccccccCCCCccccccCCCcccEEECC--EEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCC
Q 018005 169 NYAFVYDS-TDQSWSKFDIDGFPSMILSQSSHQEGVFYKG--SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPH 245 (362)
Q Consensus 169 ~~~~vy~s-~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G--~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~ 245 (362)
..+.++.. +|.+|+.-. +-. . .-.-+++.+++ .+..-.++..+|-++|+...+=-.. ..+
T Consensus 228 RqVKlWrmnetKaWEvDt---crg--H--~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t----------frr 290 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDT---CRG--H--YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT----------FRR 290 (1202)
T ss_pred ceeeEEEeccccceeehh---hhc--c--cCCcceEEecCccceeEecCCCccEEEEecccccceee----------eec
Confidence 35555543 677886543 111 1 11234555554 3333344556899999976532111 111
Q ss_pred cccccceeecccCCCeEEEEEEeecCCccceEEEEEEC
Q 018005 246 ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (362)
Q Consensus 246 ~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~ 283 (362)
......+++. --..-||.+++ ...+.||+|+
T Consensus 291 endRFW~laa-hP~lNLfAAgH------DsGm~VFkle 321 (1202)
T KOG0292|consen 291 ENDRFWILAA-HPELNLFAAGH------DSGMIVFKLE 321 (1202)
T ss_pred cCCeEEEEEe-cCCcceeeeec------CCceEEEEEc
Confidence 1112233321 02366777766 2678999996
No 96
>PLN02772 guanylate kinase
Probab=72.43 E-value=18 Score=33.55 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=37.9
Q ss_pred EEEEEeeecCC----CeEEEEeCCCCcccccccCCCCccccccCCCcccEEE-CCEEEEEec
Q 018005 158 KIFMLFAKSFP----NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KGSLYFTTP 214 (362)
Q Consensus 158 kv~~~~~~~~~----~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~ly~~~~ 214 (362)
|++++|+.... ..+++||..++.|......+-++ .+ +..+.++.+ +++++++..
T Consensus 36 k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P--~~-r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 36 KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGP--KP-CKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred EEEEEcccCCCccccceEEEEECCCCcEecccccCCCC--CC-CCcceEEEECCceEEEEeC
Confidence 88988875433 38999999999998877433332 22 245667767 678888863
No 97
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=71.02 E-value=87 Score=30.61 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=23.9
Q ss_pred cccEEECCEEEEEecCCcEEEEEEcCC--Ceeec
Q 018005 200 QEGVFYKGSLYFTTPEPFSIVRFDLEN--GIWET 231 (362)
Q Consensus 200 ~~~v~~~G~ly~~~~~~~~i~~~D~~~--~~w~~ 231 (362)
..+++.+|.+|+.+... .+.++|.++ ..|+.
T Consensus 63 stPvv~~g~vyv~s~~g-~v~AlDa~TGk~lW~~ 95 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-RVYALDAKTGKELWKY 95 (527)
T ss_pred cCCEEECCEEEEECCCC-cEEEEECCCCceeeEe
Confidence 45788899999876554 699999886 47875
No 98
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=70.16 E-value=52 Score=29.12 Aligned_cols=113 Identities=14% Similarity=0.393 Sum_probs=58.7
Q ss_pred CeEEEEeCCCCcccccccCCCCcccccc--CCCcccEEECCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCc
Q 018005 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQ--SSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHE 246 (362)
Q Consensus 169 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~--~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~ 246 (362)
..+-+||..+.+|..... ++.. .... ....+-+++.|.+-.-+.....+..||.++.+|+.+..... . -+|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~-~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s--~-~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN-GISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS--N-SIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecCCC-CceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc--c-cCCCc
Confidence 367799999999988873 2211 1100 01122333333333222234578999999999987643100 0 03443
Q ss_pred ccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEec
Q 018005 247 LTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVER 293 (362)
Q Consensus 247 ~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~ 293 (362)
......... -..++++.|.. ......+..| ++++|..+..
T Consensus 91 v~a~~~~~~--d~~~~~~aG~~--~~g~~~l~~~---dGs~W~~i~~ 130 (281)
T PF12768_consen 91 VTALTFISN--DGSNFWVAGRS--ANGSTFLMKY---DGSSWSSIGS 130 (281)
T ss_pred EEEEEeecc--CCceEEEecee--cCCCceEEEE---cCCceEeccc
Confidence 332222211 23456666654 1223445555 3556998865
No 99
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=69.03 E-value=1.7e+02 Score=31.48 Aligned_cols=223 Identities=14% Similarity=0.140 Sum_probs=107.3
Q ss_pred EecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCC--------------C-ccceEEEEeCCCceEEEEEeeecCCCe
Q 018005 106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP--------------F-DFELLTLVSTPSGYKIFMLFAKSFPNY 170 (362)
Q Consensus 106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~--------------~-~~~~~~~~~~~~~ykv~~~~~~~~~~~ 170 (362)
+...++.|++.......+.++|+.++.-..+..-... . .-..+++++.. -.+++... ....
T Consensus 631 vd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~--g~LyVad~--~~~~ 706 (1057)
T PLN02919 631 YNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN--EKVYIAMA--GQHQ 706 (1057)
T ss_pred EeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC--CeEEEEEC--CCCe
Confidence 4445667777765567889999988876665321100 0 01134444321 13444322 3456
Q ss_pred EEEEeCCCCcccccccCCCC----c--cccccCCCcccEEE--CC-EEEEEecCCcEEEEEEcCCCeeecCC--CC--Cc
Q 018005 171 AFVYDSTDQSWSKFDIDGFP----S--MILSQSSHQEGVFY--KG-SLYFTTPEPFSIVRFDLENGIWETPN--DA--ND 237 (362)
Q Consensus 171 ~~vy~s~~~~W~~~~~~~~p----~--~~~~~~~~~~~v~~--~G-~ly~~~~~~~~i~~~D~~~~~w~~~~--~p--~~ 237 (362)
+.+|+..++..+....++.. . ..........++.+ +| .+|+.......|.+||+.+.....+. .+ ..
T Consensus 707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCc
Confidence 77888776654332200000 0 00000112334544 34 49988777778999999875432211 00 00
Q ss_pred ccccCCCC--c------c-cccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhcccc
Q 018005 238 HMTMMLPH--E------L-TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYH 308 (362)
Q Consensus 238 ~~~~~~p~--~------~-~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~ 308 (362)
.... ... + . .-..+... .+|.|||... ...+|.+|..+ .+....+.......+.+-.... .
T Consensus 787 ~l~~-fG~~dG~g~~~~l~~P~Gvavd--~dG~LYVADs-----~N~rIrviD~~-tg~v~tiaG~G~~G~~dG~~~~-a 856 (1057)
T PLN02919 787 NLFK-FGDHDGVGSEVLLQHPLGVLCA--KDGQIYVADS-----YNHKIKKLDPA-TKRVTTLAGTGKAGFKDGKALK-A 856 (1057)
T ss_pred cccc-ccCCCCchhhhhccCCceeeEe--CCCcEEEEEC-----CCCEEEEEECC-CCeEEEEeccCCcCCCCCcccc-c
Confidence 0000 000 0 0 01223322 5788988875 34778888663 3333333321110000000000 0
Q ss_pred CC--ccEEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 018005 309 NY--DHVYCFWHQGMICVCCYTWPEILYYNVARRTW 342 (362)
Q Consensus 309 ~~--~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w 342 (362)
.. ..-.++..++.+|+.....+.|.++|+++++-
T Consensus 857 ~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 857 QLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 01 11123344567899887778899999999864
No 100
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=67.51 E-value=3.5 Score=36.92 Aligned_cols=39 Identities=21% Similarity=0.491 Sum_probs=33.3
Q ss_pred hhhcCCCHHHHHHHHccCCh--------hhhhhhhccchhhhhhccC
Q 018005 11 AIWSRLPEDLLDHVLSFLPP--------KMLLKLRSTCKHFNSLLFS 49 (362)
Q Consensus 11 ~~~~~LP~dll~~IL~rLp~--------~~l~~~r~VcK~W~~~i~~ 49 (362)
..|..||.++|.+|+.|+.. ++.+.+..||+.|+...++
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 58999999999999999852 3578899999999997654
No 101
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=66.54 E-value=90 Score=27.32 Aligned_cols=111 Identities=9% Similarity=0.083 Sum_probs=58.8
Q ss_pred ceEEEecCCCCeEEEEeCC-cCceeeccCCC--CCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccC
Q 018005 111 GLLCFSLPSSSSFLVCNLV-TLSSRTIDFPT--YPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID 187 (362)
Q Consensus 111 Gll~~~~~~~~~~~v~NP~-t~~w~~lP~~~--~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~ 187 (362)
|.++..++.++.+.+|+-. .+.|....-+. ..+....++..+.+ +.++.+. ....+-+|.-+++.|...+
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g---~~La~aS--FD~t~~Iw~k~~~efecv~-- 99 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG---RYLASAS--FDATVVIWKKEDGEFECVA-- 99 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC---cEEEEee--ccceEEEeecCCCceeEEe--
Confidence 3355555557889999888 56676554332 22333334443333 3344333 3356778888888887766
Q ss_pred CCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcC-CCeeecC
Q 018005 188 GFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLE-NGIWETP 232 (362)
Q Consensus 188 ~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~-~~~w~~~ 232 (362)
.+..+. .--.+|.. +|.+-.+..+...+...... .+++..+
T Consensus 100 ~lEGHE----nEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 100 TLEGHE----NEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred eeeccc----cceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 222210 11123333 46666666666666665554 4456543
No 102
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=66.18 E-value=1.1e+02 Score=27.99 Aligned_cols=153 Identities=16% Similarity=0.269 Sum_probs=81.6
Q ss_pred CCeEEEEeCCCCc--ccccccCCCCccccccCCCcccEEE-CC-EEEEEecCCcEEEEEEcC--CCeeecCCCCCccccc
Q 018005 168 PNYAFVYDSTDQS--WSKFDIDGFPSMILSQSSHQEGVFY-KG-SLYFTTPEPFSIVRFDLE--NGIWETPNDANDHMTM 241 (362)
Q Consensus 168 ~~~~~vy~s~~~~--W~~~~~~~~p~~~~~~~~~~~~v~~-~G-~ly~~~~~~~~i~~~D~~--~~~w~~~~~p~~~~~~ 241 (362)
...+.+|+...+. ........+|. .......++. +| .+|++.+....|.+|+.. +..++.+..-.
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~----G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~----- 235 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPP----GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS----- 235 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECST----TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-----
T ss_pred CCEEEEEEEeCCCceEEEeecccccc----CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEee-----
Confidence 4578888886655 43322001222 1111123333 34 678888777788888776 66665532110
Q ss_pred CCCCcc----cccceeecccCCCe-EEEEEEeecCCccceEEEEEECCC-CCEEEEecccHHHHHHhhhccccCCccEEE
Q 018005 242 MLPHEL----TFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCG-GNWIEVERVPEMMCRKFMSVCYHNYDHVYC 315 (362)
Q Consensus 242 ~~p~~~----~~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~-~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~ 315 (362)
.+|... ....+... -+|+ ||+... ....|.+|+++.. +.-+.+..++.. +....-..
T Consensus 236 ~~~~~~~~~~~~~~i~is--pdg~~lyvsnr-----~~~sI~vf~~d~~~g~l~~~~~~~~~----------G~~Pr~~~ 298 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAIS--PDGRFLYVSNR-----GSNSISVFDLDPATGTLTLVQTVPTG----------GKFPRHFA 298 (345)
T ss_dssp SCETTSCSSSSEEEEEE---TTSSEEEEEEC-----TTTEEEEEEECTTTTTEEEEEEEEES----------SSSEEEEE
T ss_pred eccccccccCCceeEEEe--cCCCEEEEEec-----cCCEEEEEEEecCCCceEEEEEEeCC----------CCCccEEE
Confidence 033221 12233321 4666 555544 4689999999655 456666555310 11111222
Q ss_pred E-eeCCEEEEEeecCCeEEEEEC--CCCceEEcC
Q 018005 316 F-WHQGMICVCCYTWPEILYYNV--ARRTWHWLP 346 (362)
Q Consensus 316 ~-~~~~~i~~~~~~~~~v~~yd~--~~~~w~~~~ 346 (362)
+ -.++.+++....++.|.+|+. ++++++.+.
T Consensus 299 ~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 299 FSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 2 356788888877788887755 677887764
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.45 E-value=1e+02 Score=27.59 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=49.6
Q ss_pred CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc-ccccccCCCCccccccCCC
Q 018005 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS-WSKFDIDGFPSMILSQSSH 199 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~-W~~~~~~~~p~~~~~~~~~ 199 (362)
..+..||..+|+-...-.+...... +-+.+.+.+|.|.. ...+.+|.+++.+ -+.+. +|. ..
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~~at~--v~w~~~Gd~F~v~~------~~~i~i~q~d~A~v~~~i~---~~~------r~ 211 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKNKATL--VSWSPQGDHFVVSG------RNKIDIYQLDNASVFREIE---NPK------RI 211 (362)
T ss_pred ceeeeehhhcCccceeeccCCccee--eEEcCCCCEEEEEe------ccEEEEEecccHhHhhhhh---ccc------cc
Confidence 4567788887776554444322211 33444444454442 3478888887643 23332 221 12
Q ss_pred cccEEECCEEEEEecCCcEEEEEEcCC
Q 018005 200 QEGVFYKGSLYFTTPEPFSIVRFDLEN 226 (362)
Q Consensus 200 ~~~v~~~G~ly~~~~~~~~i~~~D~~~ 226 (362)
....+.++..-.++++...+..+|...
T Consensus 212 l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 212 LCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred eeeeecCCceEEEecCCceEEEeccCC
Confidence 334566666666777767888898876
No 104
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=65.24 E-value=40 Score=32.44 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCceEEEecCCCCeEEEEeCCcCceeeccCCCCC--CccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccccc
Q 018005 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP--FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186 (362)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~--~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~ 186 (362)
.+|-++..+-.+.++.||||+. .+.+..+... -......|.+.+.+ ++++.+. ....+++||....+=+...-
T Consensus 60 ~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~TgHtaNIFsvKFvP~tnn-riv~sgA--gDk~i~lfdl~~~~~~~~d~ 134 (758)
T KOG1310|consen 60 ADGELLASGSDDTRLIVWDPFE--YKLLHSISTGHTANIFSVKFVPYTNN-RIVLSGA--GDKLIKLFDLDSSKEGGMDH 134 (758)
T ss_pred CCCCEEeecCCcceEEeecchh--cceeeeeecccccceeEEeeeccCCC-eEEEecc--CcceEEEEeccccccccccc
Confidence 5676666665567999999994 4444444332 23344556654444 4444332 34688899886432221110
Q ss_pred CCCC--ccc--cccCCCcccEEE-CC-EEEEEecCCcEEEEEEcCC
Q 018005 187 DGFP--SMI--LSQSSHQEGVFY-KG-SLYFTTPEPFSIVRFDLEN 226 (362)
Q Consensus 187 ~~~p--~~~--~~~~~~~~~v~~-~G-~ly~~~~~~~~i~~~D~~~ 226 (362)
++. ... ...+.-...+.. +| ..+|..++..++.-||+..
T Consensus 135 -~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 135 -GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred -CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 111 000 000111223333 44 6778877666899999875
No 105
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=65.16 E-value=1.1e+02 Score=27.89 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=57.1
Q ss_pred CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCC
Q 018005 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG 285 (362)
Q Consensus 206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~ 285 (362)
+..+-+.++.......+|..+..|-. ..++ .-........ . .+|.|.+-++. ...+.||+....
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~-eltg------HKDSVt~~~F--s--hdgtlLATGdm-----sG~v~v~~~stg 138 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAG-ELTG------HKDSVTCCSF--S--HDGTLLATGDM-----SGKVLVFKVSTG 138 (399)
T ss_pred CCceEEecCCCceEEEEEccCCccee-EecC------CCCceEEEEE--c--cCceEEEecCC-----CccEEEEEcccC
Confidence 34555555555567788888877643 2121 1122222222 2 67777666653 366777777544
Q ss_pred CC-EEEEecccHHHHHHhhhccccCCccEEEEee-CCEEEEEeecCCeEEEEECCCCceEEc
Q 018005 286 GN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWH-QGMICVCCYTWPEILYYNVARRTWHWL 345 (362)
Q Consensus 286 ~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~v~~yd~~~~~w~~~ 345 (362)
.. |+....+.. .....+| ...|++.+...+.+.+|.+.++.-.++
T Consensus 139 ~~~~~~~~e~~d---------------ieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 139 GEQWKLDQEVED---------------IEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred ceEEEeecccCc---------------eEEEEecccccEEEeecCCCcEEEEECCCcceeeE
Confidence 43 765433210 1112222 244566655666778888777644444
No 106
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=65.15 E-value=18 Score=32.45 Aligned_cols=83 Identities=20% Similarity=0.425 Sum_probs=45.1
Q ss_pred cccEEE-CCEEEEEec------CC-cEEEEEEcC-CCeeecCCCCCcccccCCCCcccccceeecccC-CCeEEEEEEee
Q 018005 200 QEGVFY-KGSLYFTTP------EP-FSIVRFDLE-NGIWETPNDANDHMTMMLPHELTFFRLVNDGEE-SNKLYLIGGVG 269 (362)
Q Consensus 200 ~~~v~~-~G~ly~~~~------~~-~~i~~~D~~-~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~-~G~L~vv~~~~ 269 (362)
..+|.. ||.|.+-.. .. ..++.|-.+ ...|..-. - +.|.+...+.++ | . +|+|.|+..+.
T Consensus 124 GSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lsk-g------~s~~gC~~psv~-E--We~gkLlM~~~c~ 193 (310)
T PF13859_consen 124 GSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSK-G------MSPAGCSDPSVV-E--WEDGKLLMMTACD 193 (310)
T ss_dssp EE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S-----------TT-EEEEEE-E--E-TTEEEEEEE-T
T ss_pred CCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEecc-c------cCCCCcceEEEE-e--ccCCeeEEEEecc
Confidence 455666 777766532 21 457888877 67888632 2 034555667777 6 9 89999998864
Q ss_pred cCCccceEEEEEECCCCC-EEEE-ecccH
Q 018005 270 RNGISTTMKLWELGCGGN-WIEV-ERVPE 296 (362)
Q Consensus 270 ~~~~~~~i~vw~l~~~~~-W~~v-~~~p~ 296 (362)
...-.||+-.+.+. |++. .+++.
T Consensus 194 ----~g~rrVYeS~DmG~tWtea~gtlsr 218 (310)
T PF13859_consen 194 ----DGRRRVYESGDMGTTWTEALGTLSR 218 (310)
T ss_dssp ----TS---EEEESSTTSS-EE-TTTTTT
T ss_pred ----cceEEEEEEcccceehhhccCccce
Confidence 23558998866665 9994 56653
No 107
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.11 E-value=16 Score=37.19 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=34.8
Q ss_pred cceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE---eeCCEEEEEeecCCeEEEEECCCC
Q 018005 274 STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF---WHQGMICVCCYTWPEILYYNVARR 340 (362)
Q Consensus 274 ~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~v~~yd~~~~ 340 (362)
...+.+|++++...|+.- + |.++++.+.++ .+.++ ++..+..+.+-+||+..+
T Consensus 227 DRqVKlWrmnetKaWEvD-t------------crgH~nnVssvlfhp~q~l-IlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 227 DRQVKLWRMNETKAWEVD-T------------CRGHYNNVSSVLFHPHQDL-ILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cceeeEEEeccccceeeh-h------------hhcccCCcceEEecCccce-eEecCCCccEEEEecccc
Confidence 478999999877779832 1 22455555544 34464 555555678999999876
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.86 E-value=59 Score=29.00 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=42.3
Q ss_pred cceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCceEEcCCCCC---
Q 018005 274 STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPS--- 350 (362)
Q Consensus 274 ~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~~~~~~--- 350 (362)
..++.||+|... -..+++|-. . ...+. ..+..+..|+.......++-.||+.-++.-++|..+.
T Consensus 377 DrTvKvWdLrNM--RsplATIRt---------d-S~~NR-vavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH 443 (481)
T KOG0300|consen 377 DRTVKVWDLRNM--RSPLATIRT---------D-SPANR-VAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH 443 (481)
T ss_pred CceEEEeeeccc--cCcceeeec---------C-Cccce-eEeecCCceEEeccCCceEEEEecCCCccccCCccccccc
Confidence 478999988532 233333310 0 01122 2234455566555566789999999887666663322
Q ss_pred --------------CCCCCCccee
Q 018005 351 --------------LPHKWSCGFS 360 (362)
Q Consensus 351 --------------~~~~~~~~~~ 360 (362)
.++.+.|||-
T Consensus 444 rRMV~c~AW~eehp~cnLftcGFD 467 (481)
T KOG0300|consen 444 RRMVTCCAWLEEHPACNLFTCGFD 467 (481)
T ss_pred ceeeeeeeccccCccccccccccc
Confidence 3677888874
No 109
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=60.16 E-value=2e+02 Score=29.14 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.3
Q ss_pred CCCeEEEEEEeecCCccceEEEEEECC
Q 018005 258 ESNKLYLIGGVGRNGISTTMKLWELGC 284 (362)
Q Consensus 258 ~~G~L~vv~~~~~~~~~~~i~vw~l~~ 284 (362)
-+|++.+++.. ..++.||-+|.
T Consensus 518 pdgk~LaVsLL-----dnTVkVyflDt 539 (888)
T KOG0306|consen 518 PDGKLLAVSLL-----DNTVKVYFLDT 539 (888)
T ss_pred CCCcEEEEEec-----cCeEEEEEecc
Confidence 47888888773 48999999973
No 110
>PF13919 ASXH: Asx homology domain
Probab=58.25 E-value=7.6 Score=30.22 Aligned_cols=50 Identities=28% Similarity=0.522 Sum_probs=38.8
Q ss_pred CChhhhcCCCHHHHHHHHccCChhhhh--------------------hhhccchhhhhhccCcccccccc
Q 018005 8 MDPAIWSRLPEDLLDHVLSFLPPKMLL--------------------KLRSTCKHFNSLLFSPSFLSKTK 57 (362)
Q Consensus 8 ~~~~~~~~LP~dll~~IL~rLp~~~l~--------------------~~r~VcK~W~~~i~~~~F~~~~~ 57 (362)
.++..|..||.+--.+||+.||..+.. .|+..|..|+..+.+..|...+.
T Consensus 39 ~N~~tw~~L~~eeq~eLl~LLP~~D~~~~~~~~~~~~~l~~S~lnn~~F~~a~~~fqe~L~~G~~~pe~~ 108 (138)
T PF13919_consen 39 LNPETWSCLPEEEQQELLKLLPEVDRQVGPDPPDDSLPLSESALNNEFFRDACQEFQERLAEGEFDPEWQ 108 (138)
T ss_pred hCHHHHhcCCHHHHHHHHHhCCCCCcccccCCCcccccCCHHHhcCHHHHHHHHHHHHHHHcCCCChHHH
Confidence 468899999999999999999965441 36777888888888777655443
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=57.99 E-value=1.4e+02 Score=26.64 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=37.6
Q ss_pred CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEEC
Q 018005 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (362)
Q Consensus 206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~ 283 (362)
+|...+.++....+-.+|+.+++-..+... -......+.+ . .-+.=+++.|. -.+++..|++.
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H--------d~pvkt~~wv-~--~~~~~cl~TGS----WDKTlKfWD~R 145 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVSQVAAH--------DAPVKTCHWV-P--GMNYQCLVTGS----WDKTLKFWDTR 145 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCeeeeeec--------ccceeEEEEe-c--CCCcceeEecc----cccceeecccC
Confidence 466666666656788899999877766422 1223333443 1 22233666663 34889999664
No 112
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=56.79 E-value=8.6 Score=27.78 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.4
Q ss_pred hhhcCCCHHHHHHHHccCChhhhhh
Q 018005 11 AIWSRLPEDLLDHVLSFLPPKMLLK 35 (362)
Q Consensus 11 ~~~~~LP~dll~~IL~rLp~~~l~~ 35 (362)
..|..||.|+-..||+.|+-.+|..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999888754
No 113
>PTZ00420 coronin; Provisional
Probab=56.42 E-value=2.1e+02 Score=28.29 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=92.7
Q ss_pred ceEEEecCCCCeEEEEeCCcCce--eeccC----C-CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccc
Q 018005 111 GLLCFSLPSSSSFLVCNLVTLSS--RTIDF----P-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK 183 (362)
Q Consensus 111 Gll~~~~~~~~~~~v~NP~t~~w--~~lP~----~-~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~ 183 (362)
+-+++.+..++.+.+||..++.- ..+.. . ........+.+.+. ...+++.++ ....+.+||..++. .
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~--g~~iLaSgS--~DgtIrIWDl~tg~--~ 160 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM--NYYIMCSSG--FDSFVNIWDIENEK--R 160 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC--CCeEEEEEe--CCCeEEEEECCCCc--E
Confidence 33444444567899999876421 11100 0 11111223333332 223333333 24578899987753 1
Q ss_pred cccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeec-CCCCCcccccCCCCcccccceeecc-cCC
Q 018005 184 FDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWET-PNDANDHMTMMLPHELTFFRLVNDG-EES 259 (362)
Q Consensus 184 ~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~-~~~p~~~~~~~~p~~~~~~~lv~~~-~~~ 259 (362)
.. .+.. . .....+.+ +|.+...+.....+..||+.+.+-.. +... ........+...| ..+
T Consensus 161 ~~--~i~~---~--~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH--------~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 161 AF--QINM---P--KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH--------DGGKNTKNIWIDGLGGD 225 (568)
T ss_pred EE--EEec---C--CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc--------cCCceeEEEEeeeEcCC
Confidence 11 0100 0 01112222 57776666555679999998764321 1111 1111111111000 024
Q ss_pred CeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE--eeCCEEEEEeecCCeEEEEEC
Q 018005 260 NKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNV 337 (362)
Q Consensus 260 G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~ 337 (362)
+...+.++..+ .....+.+|++...+.=.....+.. ....+..+ ...+.+|+.+.....+.+|++
T Consensus 226 ~~~IlTtG~d~-~~~R~VkLWDlr~~~~pl~~~~ld~------------~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 226 DNYILSTGFSK-NNMREMKLWDLKNTTSALVTMSIDN------------ASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred CCEEEEEEcCC-CCccEEEEEECCCCCCceEEEEecC------------CccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 45555545321 1235799998864333111111210 00111122 234677777766778999999
Q ss_pred CCCceEEcCC
Q 018005 338 ARRTWHWLPS 347 (362)
Q Consensus 338 ~~~~w~~~~~ 347 (362)
.++....+..
T Consensus 293 ~~~~~~~l~~ 302 (568)
T PTZ00420 293 SLGSIRKVNE 302 (568)
T ss_pred cCCcEEeecc
Confidence 8876655543
No 114
>PTZ00334 trans-sialidase; Provisional
Probab=55.94 E-value=72 Score=32.59 Aligned_cols=82 Identities=18% Similarity=0.312 Sum_probs=50.9
Q ss_pred cccEEE-CCEEEEEec------CCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCC-CeEEEEEEeecC
Q 018005 200 QEGVFY-KGSLYFTTP------EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEES-NKLYLIGGVGRN 271 (362)
Q Consensus 200 ~~~v~~-~G~ly~~~~------~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~-G~L~vv~~~~~~ 271 (362)
..+|.. ||.+.+-.. ....++.|-.++..|..-. - +.|.+...+.++ | ++ |+|.|+..+.+
T Consensus 263 GSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~-g------~s~~gC~~P~I~-E--We~gkLlM~t~C~d- 331 (780)
T PTZ00334 263 GSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSK-G------MSADGCSDPSVV-E--WKEGKLMMMTACDD- 331 (780)
T ss_pred cCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcC-C------CCCCCCCCCEEE-E--EcCCeEEEEEEeCC-
Confidence 355555 677665522 1235678877777797532 2 134455567777 6 96 99999988642
Q ss_pred CccceEEEEEECCCCC-EEEE-eccc
Q 018005 272 GISTTMKLWELGCGGN-WIEV-ERVP 295 (362)
Q Consensus 272 ~~~~~i~vw~l~~~~~-W~~v-~~~p 295 (362)
..-.||+-.+-+. |++. .+++
T Consensus 332 ---G~RrVYES~DmG~tWtEAlGTLs 354 (780)
T PTZ00334 332 ---GRRRVYESGDKGDSWTEALGTLS 354 (780)
T ss_pred ---CCEEEEEECCCCCChhhCCCccc
Confidence 3347888865554 9985 4444
No 115
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=55.74 E-value=67 Score=28.85 Aligned_cols=75 Identities=9% Similarity=0.033 Sum_probs=43.9
Q ss_pred CCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCC-eEEEEE
Q 018005 258 ESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP-EILYYN 336 (362)
Q Consensus 258 ~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~v~~yd 336 (362)
.+|+|.+..+ ..+.+|+++....+...+.+.. ..........++.|++...... .++.|+
T Consensus 97 ~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~------------~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 97 FNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDS------------PFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp ETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-B------------SSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred hCCEEEEeec-------CEEEEEEccCcccchhhheecc------------eEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 7888555443 8889999975555887776531 1112223345777777653322 456777
Q ss_pred CCCCceEEcCCCCCC
Q 018005 337 VARRTWHWLPSCPSL 351 (362)
Q Consensus 337 ~~~~~w~~~~~~~~~ 351 (362)
.+.++...+..-..+
T Consensus 158 ~~~~~l~~va~d~~~ 172 (321)
T PF03178_consen 158 EENNKLILVARDYQP 172 (321)
T ss_dssp TTTE-EEEEEEESS-
T ss_pred ccCCEEEEEEecCCC
Confidence 766777777654443
No 116
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=54.85 E-value=57 Score=24.30 Aligned_cols=43 Identities=7% Similarity=-0.081 Sum_probs=25.0
Q ss_pred CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEe
Q 018005 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLF 163 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~ 163 (362)
..+.++||.|+.|......+.....-.+-.......|+|++..
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEee
Confidence 4688899999998765432222212222223455678888654
No 117
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=54.79 E-value=1.9e+02 Score=27.33 Aligned_cols=149 Identities=6% Similarity=-0.023 Sum_probs=79.6
Q ss_pred EecCCc-eEEEecCCCCeEEEEeCCcCceeeccCCCCC--CccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccc
Q 018005 106 LSSSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP--FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS 182 (362)
Q Consensus 106 ~~s~~G-ll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~--~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~ 182 (362)
++.+|- .++..+ ...-+++||..|++..++-++.-. .....+.+...+ .++++.| ....+++....|+.|-
T Consensus 265 f~p~G~~~i~~s~-rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~---~fia~~G--~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 265 FAPNGHSVIFTSG-RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS---NFIAIAG--NNGHIHLLHAKTKELI 338 (514)
T ss_pred ecCCCceEEEecc-cceEEEEeeccccccccccCCCCcccchhheeEecCCC---CeEEEcc--cCceEEeehhhhhhhh
Confidence 344444 455444 356789999999999988776322 122233333322 2444444 2347788888999886
Q ss_pred ccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCc-ccccceeecccCCCe
Q 018005 183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHE-LTFFRLVNDGEESNK 261 (362)
Q Consensus 183 ~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~-~~~~~lv~~~~~~G~ 261 (362)
..- .++. ....-....+|+..++.+....+.++|+....-.... .-.+ .....+... .+|.
T Consensus 339 ~s~--KieG-----~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf---------~D~G~v~gts~~~S--~ng~ 400 (514)
T KOG2055|consen 339 TSF--KIEG-----VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF---------VDDGSVHGTSLCIS--LNGS 400 (514)
T ss_pred hee--eecc-----EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE---------eecCccceeeeeec--CCCc
Confidence 544 2332 1111122235655555433337899999876332221 2222 223333322 6888
Q ss_pred EEEEEEeecCCccceEEEEEEC
Q 018005 262 LYLIGGVGRNGISTTMKLWELG 283 (362)
Q Consensus 262 L~vv~~~~~~~~~~~i~vw~l~ 283 (362)
++.+|. ...-+.||+.+
T Consensus 401 ylA~GS-----~~GiVNIYd~~ 417 (514)
T KOG2055|consen 401 YLATGS-----DSGIVNIYDGN 417 (514)
T ss_pred eEEecc-----CcceEEEeccc
Confidence 666554 34567788654
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=54.13 E-value=1.6e+02 Score=26.24 Aligned_cols=146 Identities=10% Similarity=0.093 Sum_probs=68.6
Q ss_pred CCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCC
Q 018005 109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDG 188 (362)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~ 188 (362)
-+|-..+.++.++.+-+|+..++|-..+..=.-+.. ...+.. +..|.+++.|.- ...+..+|..... .
T Consensus 82 ddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvk--t~~wv~-~~~~~cl~TGSW--DKTlKfWD~R~~~-------p 149 (347)
T KOG0647|consen 82 DDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVK--TCHWVP-GMNYQCLVTGSW--DKTLKFWDTRSSN-------P 149 (347)
T ss_pred cCCceEEeeccCCceEEEEccCCCeeeeeeccccee--EEEEec-CCCcceeEeccc--ccceeecccCCCC-------e
Confidence 355333344456789999999998776543221111 111222 233677776652 3456666665311 1
Q ss_pred CCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCCcccccceeecccCCCeEEEEE
Q 018005 189 FPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIG 266 (362)
Q Consensus 189 ~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~ 266 (362)
+-...++.+... +-+.--+-+++.....|.+|++++. ++..+.-| +---.++..+. -+++.+++|
T Consensus 150 v~t~~LPeRvYa--~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~Sp-------Lk~Q~R~va~f----~d~~~~alG 216 (347)
T KOG0647|consen 150 VATLQLPERVYA--ADVLYPMAVVATAERHIAVYNLENPPTEFKRIESP-------LKWQTRCVACF----QDKDGFALG 216 (347)
T ss_pred eeeeeccceeee--hhccCceeEEEecCCcEEEEEcCCCcchhhhhcCc-------ccceeeEEEEE----ecCCceEee
Confidence 111123322111 1111111122223346999999764 44444433 22222333443 356666777
Q ss_pred EeecCCccceEEEEEECC
Q 018005 267 GVGRNGISTTMKLWELGC 284 (362)
Q Consensus 267 ~~~~~~~~~~i~vw~l~~ 284 (362)
..+ ..+.|-.+++
T Consensus 217 siE-----Grv~iq~id~ 229 (347)
T KOG0647|consen 217 SIE-----GRVAIQYIDD 229 (347)
T ss_pred eec-----ceEEEEecCC
Confidence 643 3444555543
No 119
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=54.09 E-value=1.6e+02 Score=26.16 Aligned_cols=139 Identities=11% Similarity=0.118 Sum_probs=69.0
Q ss_pred CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccc-c-CCCCccccccCC
Q 018005 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD-I-DGFPSMILSQSS 198 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~-~-~~~p~~~~~~~~ 198 (362)
+.+.|||..|..-...-+++... ...-+|.+++ ..++.||. .+.+-||+..+..=+... . ..++.+ ..+
T Consensus 77 GklIvWDs~TtnK~haipl~s~W-VMtCA~sPSg---~~VAcGGL--dN~Csiy~ls~~d~~g~~~v~r~l~gH---tgy 147 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLPSSW-VMTCAYSPSG---NFVACGGL--DNKCSIYPLSTRDAEGNVRVSRELAGH---TGY 147 (343)
T ss_pred CeEEEEEcccccceeEEecCcee-EEEEEECCCC---CeEEecCc--CceeEEEecccccccccceeeeeecCc---cce
Confidence 56778888886644433333221 1122344433 45666664 357778888753211111 0 011110 112
Q ss_pred CcccEEECCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEE
Q 018005 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMK 278 (362)
Q Consensus 199 ~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~ 278 (362)
-..+-+++..-...+....+..-.|+++.+-...-.- .........+. . .++..|+-++++ ..-.
T Consensus 148 lScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G-------H~gDV~slsl~-p--~~~ntFvSg~cD-----~~ak 212 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG-------HTGDVMSLSLS-P--SDGNTFVSGGCD-----KSAK 212 (343)
T ss_pred eEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC-------CcccEEEEecC-C--CCCCeEEecccc-----ccee
Confidence 2334455533332333334677789887755432111 22222233444 2 588999998853 6678
Q ss_pred EEEEC
Q 018005 279 LWELG 283 (362)
Q Consensus 279 vw~l~ 283 (362)
+|++.
T Consensus 213 lWD~R 217 (343)
T KOG0286|consen 213 LWDVR 217 (343)
T ss_pred eeecc
Confidence 99774
No 120
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=53.45 E-value=1.8e+02 Score=26.67 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=74.4
Q ss_pred eEEEEeCCCCcccccccCCCCccccccCCCcc-cEEECCEEEEEecCCcEEEEEEcCCCe--eecCCCCCcccccCCC-C
Q 018005 170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQE-GVFYKGSLYFTTPEPFSIVRFDLENGI--WETPNDANDHMTMMLP-H 245 (362)
Q Consensus 170 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~-~v~~~G~ly~~~~~~~~i~~~D~~~~~--w~~~~~p~~~~~~~~p-~ 245 (362)
........+..|...-. .... ...... .+..+|++|+....+ .+.++|+++.. |+... .. .
T Consensus 36 ~~~~~~~g~~~W~~~~~-~~~~----~~~~~~~~~~~dg~v~~~~~~G-~i~A~d~~~g~~~W~~~~---------~~~~ 100 (370)
T COG1520 36 AVANNTSGTLLWSVSLG-SGGG----GIYAGPAPADGDGTVYVGTRDG-NIFALNPDTGLVKWSYPL---------LGAV 100 (370)
T ss_pred EEEcccCcceeeeeecc-cCcc----ceEeccccEeeCCeEEEecCCC-cEEEEeCCCCcEEecccC---------cCcc
Confidence 44445557778864320 1111 011222 488899999875554 79999999764 87632 11 1
Q ss_pred cccccceeecccCCCeEEEEEEeecCCccceEEEEEECC-CCC--EEEEecccHHHHHHhhhccccCCccEEEEeeCCEE
Q 018005 246 ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC-GGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMI 322 (362)
Q Consensus 246 ~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~-~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i 322 (362)
......++. .+|+||+-... + ++|.||+ +++ |..-..- . .. .. -.++..++.+
T Consensus 101 ~~~~~~~~~---~~G~i~~g~~~---g-----~~y~ld~~~G~~~W~~~~~~---~----~~-----~~-~~~v~~~~~v 156 (370)
T COG1520 101 AQLSGPILG---SDGKIYVGSWD---G-----KLYALDASTGTLVWSRNVGG---S----PY-----YA-SPPVVGDGTV 156 (370)
T ss_pred eeccCceEE---eCCeEEEeccc---c-----eEEEEECCCCcEEEEEecCC---C----eE-----Ee-cCcEEcCcEE
Confidence 112223332 57887776551 1 6777776 454 8865433 0 00 00 1123456667
Q ss_pred EEEeecCCeEEEEECCCC--ceE
Q 018005 323 CVCCYTWPEILYYNVARR--TWH 343 (362)
Q Consensus 323 ~~~~~~~~~v~~yd~~~~--~w~ 343 (362)
|+.. ..+.+.+.|..++ .|+
T Consensus 157 ~~~s-~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 157 YVGT-DDGHLYALNADTGTLKWT 178 (370)
T ss_pred EEec-CCCeEEEEEccCCcEEEE
Confidence 7764 4577888888876 454
No 121
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=53.06 E-value=1.8e+02 Score=26.48 Aligned_cols=113 Identities=16% Similarity=0.229 Sum_probs=62.5
Q ss_pred cEEECCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcc-cccceeecccCCCeEEEEEEeecCCccceEEEE
Q 018005 202 GVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHEL-TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLW 280 (362)
Q Consensus 202 ~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~-~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw 280 (362)
+...+|++.+-+....+|-.+|.+.+.--.+ + ++. +-...+ . .+.+-.|-|++ ..++.||
T Consensus 365 ClQYr~rlvVSGSSDntIRlwdi~~G~cLRv----------L-eGHEeLvRci-R--Fd~krIVSGaY-----DGkikvW 425 (499)
T KOG0281|consen 365 CLQYRDRLVVSGSSDNTIRLWDIECGACLRV----------L-EGHEELVRCI-R--FDNKRIVSGAY-----DGKIKVW 425 (499)
T ss_pred ehhccCeEEEecCCCceEEEEeccccHHHHH----------H-hchHHhhhhe-e--ecCceeeeccc-----cceEEEE
Confidence 4455899998888888999999987644332 1 111 112333 2 67777777764 3789999
Q ss_pred EECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCC
Q 018005 281 ELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR 340 (362)
Q Consensus 281 ~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~ 340 (362)
.|.-... --...++.. ..+. .+...+....-+...++.+...++|.+||....
T Consensus 426 dl~aaldpra~~~~~Cl---~~lv----~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 426 DLQAALDPRAPASTLCL---RTLV----EHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ecccccCCcccccchHH---Hhhh----hccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 8853221 111111111 0111 112223333344555565555678888888765
No 122
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=52.04 E-value=37 Score=18.27 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=16.5
Q ss_pred EEECCEEEEEecCCcEEEEEEcCCC
Q 018005 203 VFYKGSLYFTTPEPFSIVRFDLENG 227 (362)
Q Consensus 203 v~~~G~ly~~~~~~~~i~~~D~~~~ 227 (362)
+..+|.+|+.... ..+.++|.+++
T Consensus 3 ~~~~~~v~~~~~~-g~l~a~d~~~G 26 (33)
T smart00564 3 VLSDGTVYVGSTD-GTLYALDAKTG 26 (33)
T ss_pred EEECCEEEEEcCC-CEEEEEEcccC
Confidence 3456788865544 47999998764
No 123
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=51.58 E-value=2.2e+02 Score=27.13 Aligned_cols=146 Identities=13% Similarity=0.178 Sum_probs=73.6
Q ss_pred cCCceEEEecCCCCeEEEEeCCcCceeeccC-CCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCC--ccccc
Q 018005 108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDF-PTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ--SWSKF 184 (362)
Q Consensus 108 s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~-~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~--~W~~~ 184 (362)
+.+|-.......++.+.+|++.+.+-..+-. .........+++.+++. +++-+. ....+.+||.+.+ .=+..
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~---~l~s~s--~D~tiriwd~~~~~~~~~~l 242 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS---YLLSGS--DDKTLRIWDLKDDGRNLKTL 242 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc---EEEEec--CCceEEEeeccCCCeEEEEe
Confidence 4455333344345678888885555211111 12222233445554433 333222 4568889988443 22222
Q ss_pred ccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeE
Q 018005 185 DIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKL 262 (362)
Q Consensus 185 ~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L 262 (362)
. +++. .. .++.+ +|.+.+-+....++..+|+.+.+-...-.. .-.... .+..- -+|.+
T Consensus 243 ~--gH~~------~v-~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~-------hs~~is--~~~f~--~d~~~ 302 (456)
T KOG0266|consen 243 K--GHST------YV-TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG-------HSDGIS--GLAFS--PDGNL 302 (456)
T ss_pred c--CCCC------ce-EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec-------cCCceE--EEEEC--CCCCE
Confidence 2 2222 11 22222 577777777777899999998544332111 111111 12212 57777
Q ss_pred EEEEEeecCCccceEEEEEEC
Q 018005 263 YLIGGVGRNGISTTMKLWELG 283 (362)
Q Consensus 263 ~vv~~~~~~~~~~~i~vw~l~ 283 (362)
++.+. ....+.||++.
T Consensus 303 l~s~s-----~d~~i~vwd~~ 318 (456)
T KOG0266|consen 303 LVSAS-----YDGTIRVWDLE 318 (456)
T ss_pred EEEcC-----CCccEEEEECC
Confidence 77764 24789999774
No 124
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.43 E-value=1.6e+02 Score=25.45 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=54.4
Q ss_pred CCeEEEEeCCCCcccccccCCCCcc-ccccCCCcccEEECCEEEEEecC-CcEEEE--EEcCCCeeecCCCCCcccccCC
Q 018005 168 PNYAFVYDSTDQSWSKFDIDGFPSM-ILSQSSHQEGVFYKGSLYFTTPE-PFSIVR--FDLENGIWETPNDANDHMTMML 243 (362)
Q Consensus 168 ~~~~~vy~s~~~~W~~~~~~~~p~~-~~~~~~~~~~v~~~G~ly~~~~~-~~~i~~--~D~~~~~w~~~~~p~~~~~~~~ 243 (362)
.+.+.++....+.|.... .+..+ ++-+.....+..-..+.|..... ..+++. -+.+.+.|....... .
T Consensus 184 Dn~VkiW~~~~~~w~~e~--~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~------f 255 (299)
T KOG1332|consen 184 DNLVKIWKFDSDSWKLER--TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE------F 255 (299)
T ss_pred ccceeeeecCCcchhhhh--hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc------C
Confidence 457778777777997655 22211 11111112222222333433322 123333 344567887532111 3
Q ss_pred CCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEec
Q 018005 244 PHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVER 293 (362)
Q Consensus 244 p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~ 293 (362)
|...-...-. ..|.++.+.+ ..+++.+|+-+.+++|+++..
T Consensus 256 ~~~~w~vSWS----~sGn~LaVs~-----GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 256 PDVVWRVSWS----LSGNILAVSG-----GDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred CcceEEEEEe----ccccEEEEec-----CCcEEEEEEeCCCCcEEEccc
Confidence 3322122221 4566665554 348899999887888998864
No 125
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=50.45 E-value=2.2e+02 Score=26.60 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=78.0
Q ss_pred CceEEEEEeeecCCCeEEEEeCCCC-----cccccccCCCCccccccCCCcccEEECCEEEEEecC---CcEEEEEEcCC
Q 018005 155 SGYKIFMLFAKSFPNYAFVYDSTDQ-----SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE---PFSIVRFDLEN 226 (362)
Q Consensus 155 ~~ykv~~~~~~~~~~~~~vy~s~~~-----~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~---~~~i~~~D~~~ 226 (362)
+.|.++..........+++.+...+ .|+.+.. ..+. ........++.+|+++.. ...|+.+|+.+
T Consensus 238 ~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-~~~~------~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~ 310 (414)
T PF02897_consen 238 GRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-REDG------VEYYVDHHGDRLYILTNDDAPNGRLVAVDLAD 310 (414)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-SSSS-------EEEEEEETTEEEEEE-TT-TT-EEEEEETTS
T ss_pred ccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-CCCc------eEEEEEccCCEEEEeeCCCCCCcEEEEecccc
Confidence 3454443333222257788888765 6766651 1111 112233447889988753 36799999886
Q ss_pred Ce---eecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEE-ecccHHHHHHh
Q 018005 227 GI---WETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEV-ERVPEMMCRKF 302 (362)
Q Consensus 227 ~~---w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v-~~~p~~~~~~~ 302 (362)
-. |..+-.+ ......-..+. . .++.|++.... .....+.++.++ ..|... ..+|.
T Consensus 311 ~~~~~~~~~l~~-------~~~~~~l~~~~-~--~~~~Lvl~~~~---~~~~~l~v~~~~--~~~~~~~~~~p~------ 369 (414)
T PF02897_consen 311 PSPAEWWTVLIP-------EDEDVSLEDVS-L--FKDYLVLSYRE---NGSSRLRVYDLD--DGKESREIPLPE------ 369 (414)
T ss_dssp TSGGGEEEEEE---------SSSEEEEEEE-E--ETTEEEEEEEE---TTEEEEEEEETT---TEEEEEEESSS------
T ss_pred cccccceeEEcC-------CCCceeEEEEE-E--ECCEEEEEEEE---CCccEEEEEECC--CCcEEeeecCCc------
Confidence 54 5532212 11111112222 1 57777777653 345677787664 234333 22321
Q ss_pred hhccccCCccEEEE---eeCCEEEEEe--ec-CCeEEEEECCCCceEEc
Q 018005 303 MSVCYHNYDHVYCF---WHQGMICVCC--YT-WPEILYYNVARRTWHWL 345 (362)
Q Consensus 303 ~~~~~~~~~~~~~~---~~~~~i~~~~--~~-~~~v~~yd~~~~~w~~~ 345 (362)
. ..+..+ ..++.+++.- .. ...++.||+++++.+.+
T Consensus 370 ------~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 370 ------A-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp ------S-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred ------c-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 0 111122 1235555542 12 23699999999988765
No 126
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=50.15 E-value=46 Score=19.02 Aligned_cols=26 Identities=8% Similarity=-0.148 Sum_probs=19.6
Q ss_pred CCEEEEEeecCCeEEEEECCCCceEE
Q 018005 319 QGMICVCCYTWPEILYYNVARRTWHW 344 (362)
Q Consensus 319 ~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (362)
++.+|+.....+.|.++|+.+.+...
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~ 28 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIA 28 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 46788887777889999998765543
No 127
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=49.72 E-value=45 Score=19.05 Aligned_cols=24 Identities=13% Similarity=0.244 Sum_probs=16.9
Q ss_pred CEEEEEeecCCeEEEEECCCCc--eEE
Q 018005 320 GMICVCCYTWPEILYYNVARRT--WHW 344 (362)
Q Consensus 320 ~~i~~~~~~~~~v~~yd~~~~~--w~~ 344 (362)
|.||+. ...+.++++|.++++ |+.
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEEee
Confidence 356665 456789999999984 544
No 128
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=49.14 E-value=1.3e+02 Score=29.40 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=45.2
Q ss_pred eEEEEeCCCC--cccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCC
Q 018005 170 YAFVYDSTDQ--SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPH 245 (362)
Q Consensus 170 ~~~vy~s~~~--~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~ 245 (362)
.+.-.|..++ .|+... ..|. ....+...|-+++.+.....+.+||.++. .|+. . ++.
T Consensus 442 ~l~AiD~~tGk~~W~~~~--~~p~-------~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~-~---------~g~ 502 (527)
T TIGR03075 442 SLIAWDPITGKIVWEHKE--DFPL-------WGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF-K---------TGS 502 (527)
T ss_pred eEEEEeCCCCceeeEecC--CCCC-------CCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE-e---------CCC
Confidence 4566777665 476654 3332 22334556666666654457999999975 5654 3 444
Q ss_pred cccccceeecccCCCeEEEEEE
Q 018005 246 ELTFFRLVNDGEESNKLYLIGG 267 (362)
Q Consensus 246 ~~~~~~lv~~~~~~G~L~vv~~ 267 (362)
......+.-+ .+|++|++..
T Consensus 503 ~~~a~P~ty~--~~G~qYv~~~ 522 (527)
T TIGR03075 503 GIVGPPVTYE--QDGKQYVAVL 522 (527)
T ss_pred CceecCEEEE--eCCEEEEEEE
Confidence 3333333313 7999999864
No 129
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=48.63 E-value=2.6e+02 Score=26.99 Aligned_cols=32 Identities=22% Similarity=0.537 Sum_probs=24.7
Q ss_pred CcccEEECCEEEEEecCCcEEEEEEcCC--Ceeec
Q 018005 199 HQEGVFYKGSLYFTTPEPFSIVRFDLEN--GIWET 231 (362)
Q Consensus 199 ~~~~v~~~G~ly~~~~~~~~i~~~D~~~--~~w~~ 231 (362)
...+++.+|.+|+..... .+.++|.++ ..|+.
T Consensus 54 ~~sPvv~~g~vy~~~~~g-~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 54 EGTPLVVDGDMYFTTSHS-ALFALDAATGKVLWRY 87 (488)
T ss_pred ccCCEEECCEEEEeCCCC-cEEEEECCCChhhcee
Confidence 456789999999876654 699999875 46875
No 130
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=47.52 E-value=2.6e+02 Score=26.64 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=49.6
Q ss_pred CceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccccc-CC
Q 018005 110 KGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI-DG 188 (362)
Q Consensus 110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~ 188 (362)
.|-|++.++.+..+.+||.....-..-.-+......-.+.+...+. .++..+. ...+..+|.+|+.=...-. +.
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~--~fLS~sf---D~~lKlwDtETG~~~~~f~~~~ 300 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT--SFLSASF---DRFLKLWDTETGQVLSRFHLDK 300 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC--eeeeeec---ceeeeeeccccceEEEEEecCC
Confidence 3434445555678899998772211111111111111122222222 3333322 2467788888875422210 01
Q ss_pred CCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCee
Q 018005 189 FPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIW 229 (362)
Q Consensus 189 ~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w 229 (362)
+|. .+ ....+ |..++..|+....|..+|+.+.+.
T Consensus 301 ~~~-cv--kf~pd----~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 301 VPT-CV--KFHPD----NQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred Cce-ee--ecCCC----CCcEEEEecCCCcEEEEeccchHH
Confidence 111 01 11111 135666666666899999988754
No 131
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=47.40 E-value=2.2e+02 Score=25.94 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=58.0
Q ss_pred CEEEEEecCCcEEEEEEcCCC------eeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC--CccceEE
Q 018005 207 GSLYFTTPEPFSIVRFDLENG------IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN--GISTTMK 278 (362)
Q Consensus 207 G~ly~~~~~~~~i~~~D~~~~------~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~--~~~~~i~ 278 (362)
|.+||++..+ .+...|+..+ .|+... .......+.|.++.-..+- . -.|+||++.....+ .....-+
T Consensus 196 ~~~~F~Sy~G-~v~~~dlsg~~~~~~~~~~~~t-~~e~~~~WrPGG~Q~~A~~-~--~~~rlyvLMh~g~~gsHKdpgte 270 (342)
T PF06433_consen 196 GRLYFVSYEG-NVYSADLSGDSAKFGKPWSLLT-DAEKADGWRPGGWQLIAYH-A--ASGRLYVLMHQGGEGSHKDPGTE 270 (342)
T ss_dssp TEEEEEBTTS-EEEEEEETTSSEEEEEEEESS--HHHHHTTEEE-SSS-EEEE-T--TTTEEEEEEEE--TT-TTS-EEE
T ss_pred CeEEEEecCC-EEEEEeccCCcccccCcccccC-ccccccCcCCcceeeeeec-c--ccCeEEEEecCCCCCCccCCceE
Confidence 5677766554 4566666544 344321 1000112233433322222 2 47899998653322 2234568
Q ss_pred EEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCC--EEEEEeecCCeEEEEECCCCceEE
Q 018005 279 LWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQG--MICVCCYTWPEILYYNVARRTWHW 344 (362)
Q Consensus 279 vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~v~~yd~~~~~w~~ 344 (362)
||.+|... =+++.+++.+. ....+ .+..++ ++|......+.+++||..+++-..
T Consensus 271 VWv~D~~t-~krv~Ri~l~~----------~~~Si-~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 271 VWVYDLKT-HKRVARIPLEH----------PIDSI-AVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEETTT-TEEEEEEEEEE----------EESEE-EEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EEEEECCC-CeEEEEEeCCC----------ccceE-EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 99997443 34555554210 00122 233332 566555556789999999985443
No 132
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=47.07 E-value=1.3e+02 Score=30.87 Aligned_cols=62 Identities=11% Similarity=0.024 Sum_probs=40.9
Q ss_pred EEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEE-eCCCceEEEEEeeec
Q 018005 105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLV-STPSGYKIFMLFAKS 166 (362)
Q Consensus 105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~-~~~~~ykv~~~~~~~ 166 (362)
.++..+||+++.++.++.++.+|..|++-..=-.++......-+.|. .++++|.++..+++.
T Consensus 686 ~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~tY~~~~GkQYVvi~aGg~~ 748 (764)
T TIGR03074 686 PLATAGGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMTYMGKDGKQYVVIVAGGHG 748 (764)
T ss_pred cEEEcCCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEEEEecCCEEEEEEEeCCCc
Confidence 46677888887555568999999999993221122222222334566 678899999988753
No 133
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.52 E-value=2.2e+02 Score=25.59 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=22.7
Q ss_pred CcccEEECCEEEEEecCCcEEEEEEcCCC
Q 018005 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENG 227 (362)
Q Consensus 199 ~~~~v~~~G~ly~~~~~~~~i~~~D~~~~ 227 (362)
+-.+++++|..-+-++...+|..||+.+.
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~ 73 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKR 73 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccch
Confidence 44678889887766777779999999764
No 134
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=46.40 E-value=2.7e+02 Score=26.61 Aligned_cols=29 Identities=7% Similarity=0.052 Sum_probs=20.0
Q ss_pred EEEEEeecCCeEEEEECCCCceEEcCCCCC
Q 018005 321 MICVCCYTWPEILYYNVARRTWHWLPSCPS 350 (362)
Q Consensus 321 ~i~~~~~~~~~v~~yd~~~~~w~~~~~~~~ 350 (362)
.+.+.. ...++.++|++++.-+.+....+
T Consensus 415 ~~vvaN-dr~el~vididngnv~~idkS~~ 443 (668)
T COG4946 415 KVVVAN-DRFELWVIDIDNGNVRLIDKSEY 443 (668)
T ss_pred EEEEEc-CceEEEEEEecCCCeeEeccccc
Confidence 344432 34579999999998888766554
No 135
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=45.71 E-value=2.4e+02 Score=25.71 Aligned_cols=112 Identities=13% Similarity=0.234 Sum_probs=58.9
Q ss_pred EEEeeecCCCeEEEEeCCCCccccccc-CCCCccccccCCCcccEEE--CCEE-EEEecCCcEEEEEE--cCCCeeecCC
Q 018005 160 FMLFAKSFPNYAFVYDSTDQSWSKFDI-DGFPSMILSQSSHQEGVFY--KGSL-YFTTPEPFSIVRFD--LENGIWETPN 233 (362)
Q Consensus 160 ~~~~~~~~~~~~~vy~s~~~~W~~~~~-~~~p~~~~~~~~~~~~v~~--~G~l-y~~~~~~~~i~~~D--~~~~~w~~~~ 233 (362)
+++....+.-.+.-|+...++-+.++. ..+|. .+........+.+ +|++ |........|.+|- +.+.+-+.+.
T Consensus 206 Y~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~-dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~ 284 (346)
T COG2706 206 YLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE-DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG 284 (346)
T ss_pred EEEeccCCEEEEEEEcCCCceEEEeeeeccCcc-ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE
Confidence 444443334466667777788877763 23444 3433333333333 6755 54444445666664 4455444332
Q ss_pred -CCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCC
Q 018005 234 -DANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG 286 (362)
Q Consensus 234 -~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~ 286 (362)
.+ ..+-.|+ ...+- .+|++.++.. +...++.||+.|...
T Consensus 285 ~~~---teg~~PR---~F~i~----~~g~~Liaa~----q~sd~i~vf~~d~~T 324 (346)
T COG2706 285 ITP---TEGQFPR---DFNIN----PSGRFLIAAN----QKSDNITVFERDKET 324 (346)
T ss_pred Eec---cCCcCCc---cceeC----CCCCEEEEEc----cCCCcEEEEEEcCCC
Confidence 11 0000232 22332 6788777776 345779999997654
No 136
>PRK04043 tolB translocation protein TolB; Provisional
Probab=45.46 E-value=2.7e+02 Score=26.29 Aligned_cols=188 Identities=14% Similarity=0.140 Sum_probs=96.3
Q ss_pred CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCc
Q 018005 121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQ 200 (362)
Q Consensus 121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~ 200 (362)
..++++|..|++-..+...+... ....+.++ .-+++..........+++++..++.++.+. ..+. ...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~--~~~~~SPD--G~~la~~~~~~g~~~Iy~~dl~~g~~~~LT--~~~~------~d~ 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML--VVSDVSKD--GSKLLLTMAPKGQPDIYLYDTNTKTLTQIT--NYPG------IDV 280 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE--EeeEECCC--CCEEEEEEccCCCcEEEEEECCCCcEEEcc--cCCC------ccC
Confidence 47888999999887775422111 11123332 224443333334568899999888887776 2221 111
Q ss_pred ccEEE-CC-EEEEEecC--CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC-Cc-c
Q 018005 201 EGVFY-KG-SLYFTTPE--PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN-GI-S 274 (362)
Q Consensus 201 ~~v~~-~G-~ly~~~~~--~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~-~~-~ 274 (362)
.+.+. +| .+|++... ...|..+|+.+.+.+.+. . .+..... +. -+|+..+......+ .. .
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt---------~-~g~~~~~-~S---PDG~~Ia~~~~~~~~~~~~ 346 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV---------F-HGKNNSS-VS---TYKNYIVYSSRETNNEFGK 346 (419)
T ss_pred ccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc---------c-CCCcCce-EC---CCCCEEEEEEcCCCcccCC
Confidence 22222 45 67777643 236888999887775542 1 1111122 22 46765544442211 10 1
Q ss_pred ceEEEEEECCC-CCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC--CeEEEEECCCCceEEcCC
Q 018005 275 TTMKLWELGCG-GNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--PEILYYNVARRTWHWLPS 347 (362)
Q Consensus 275 ~~i~vw~l~~~-~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~v~~yd~~~~~w~~~~~ 347 (362)
...++|.++-+ +.++.+..-. ........-+|..|++..... ..+...+++-+.=..++.
T Consensus 347 ~~~~I~v~d~~~g~~~~LT~~~-------------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 347 NTFNLYLISTNSDYIRRLTANG-------------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCcEEEEEECCCCCeEECCCCC-------------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 22456666533 4466654421 001111113455666654322 248889998876565654
No 137
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=44.70 E-value=2.1e+02 Score=24.86 Aligned_cols=135 Identities=17% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCC
Q 018005 119 SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS 198 (362)
Q Consensus 119 ~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~ 198 (362)
.++.+.+||-.|+....--..+++..- +-+.. .+ +++.+... ..+..+|..+-.=-..- .||.
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtS--lEvs~-dG--~ilTia~g---ssV~Fwdaksf~~lKs~--k~P~------- 225 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTS--LEVSQ-DG--RILTIAYG---SSVKFWDAKSFGLLKSY--KMPC------- 225 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcc--eeecc-CC--CEEEEecC---ceeEEeccccccceeec--cCcc-------
Confidence 457899999999986543222222111 11111 12 33333221 24555555432111111 2443
Q ss_pred CcccEEE--CCEEEEEecCCcEEEEEEcCCCe-eecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccc
Q 018005 199 HQEGVFY--KGSLYFTTPEPFSIVRFDLENGI-WETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIST 275 (362)
Q Consensus 199 ~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~-w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~ 275 (362)
.-.++.+ +-.+|+-+++...+..||..++. -.... .+ .+....+.... -+|.+|..|. ...
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kg------h~gpVhcVrFS----PdGE~yAsGS-----EDG 289 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KG------HFGPVHCVRFS----PDGELYASGS-----EDG 289 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cC------CCCceEEEEEC----CCCceeeccC-----CCc
Confidence 1112222 33556666666678889988753 22211 11 33334444433 6999999986 347
Q ss_pred eEEEEEECCCC
Q 018005 276 TMKLWELGCGG 286 (362)
Q Consensus 276 ~i~vw~l~~~~ 286 (362)
++.+|.....+
T Consensus 290 TirlWQt~~~~ 300 (334)
T KOG0278|consen 290 TIRLWQTTPGK 300 (334)
T ss_pred eEEEEEecCCC
Confidence 89999987654
No 138
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=44.55 E-value=2.8e+02 Score=26.16 Aligned_cols=102 Identities=17% Similarity=0.299 Sum_probs=59.1
Q ss_pred CeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEe--cCCcEEEEEEcCCC-eeecCCCCCcccccCCCC
Q 018005 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTT--PEPFSIVRFDLENG-IWETPNDANDHMTMMLPH 245 (362)
Q Consensus 169 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~--~~~~~i~~~D~~~~-~w~~~~~p~~~~~~~~p~ 245 (362)
..+.+||...+. ... .+|.+ ...-..+.+...=||+. .+...+..+|+... .+..+. ++.
T Consensus 369 ~~vkiwdlks~~--~~a--~Fpgh----t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~---------l~~ 431 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVA--KFPGH----TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ---------LDE 431 (506)
T ss_pred ceEEEEEcCCcc--ccc--cCCCC----CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee---------ccc
Confidence 478888888776 344 34441 11223444433446664 34445899999753 444443 344
Q ss_pred cccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccH
Q 018005 246 ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPE 296 (362)
Q Consensus 246 ~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~ 296 (362)
...-..+... -.|++.++++ .++.||..+...+ |+++..++.
T Consensus 432 ~~~v~s~~fD--~SGt~L~~~g-------~~l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 432 KKEVNSLSFD--QSGTYLGIAG-------SDLQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred cccceeEEEc--CCCCeEEeec-------ceeEEEEEecccccceeeehhhh
Confidence 3222222213 5688877775 7788888875554 999987753
No 139
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=44.15 E-value=2.6e+02 Score=25.73 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=54.3
Q ss_pred ceeeeeeCCCCCeEe-ecCCcCCCCCCceEEEecCCceEEEecC---------CCCeEEEEeCCcCce-eeccCCCCCC-
Q 018005 76 DQYPLYDSTHGTWRR-LSLPYSLLLPSAATLLSSSKGLLCFSLP---------SSSSFLVCNLVTLSS-RTIDFPTYPF- 143 (362)
Q Consensus 76 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~s~~Gll~~~~~---------~~~~~~v~NP~t~~w-~~lP~~~~~~- 143 (362)
..+..+|....+-.. ++... . ++. .++.-+..+|+... .++.+.|+|+.|.+- .++|.++.++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-~--P~~--~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-L--PNP--VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-C--Cce--eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 467788887755432 34331 1 122 24444446666544 467899999999985 4566554433
Q ss_pred ----ccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcc
Q 018005 144 ----DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSW 181 (362)
Q Consensus 144 ----~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W 181 (362)
....+++.+++ |.+-+........+.+.|.++++=
T Consensus 102 ~~~~~~~~~~ls~dg---k~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 102 LVGTYPWMTSLTPDN---KTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred hccCccceEEECCCC---CEEEEecCCCCCEEEEEECCCCcE
Confidence 12234444332 333333333356888888887654
No 140
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=43.55 E-value=2.5e+02 Score=25.31 Aligned_cols=124 Identities=15% Similarity=0.088 Sum_probs=63.0
Q ss_pred CEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCC--------ccceEE
Q 018005 207 GSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG--------ISTTMK 278 (362)
Q Consensus 207 G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~--------~~~~i~ 278 (362)
+.||...-...+|.+||- .|..+..+....+.-+|.+..-..+.+ .+|+|||.....+.. ....|+
T Consensus 152 ~~LYaadF~~g~IDVFd~---~f~~~~~~g~F~DP~iPagyAPFnIqn---ig~~lyVtYA~qd~~~~d~v~G~G~G~Vd 225 (336)
T TIGR03118 152 DYLYAANFRQGRIDVFKG---SFRPPPLPGSFIDPALPAGYAPFNVQN---LGGTLYVTYAQQDADRNDEVAGAGLGYVN 225 (336)
T ss_pred ceEEEeccCCCceEEecC---ccccccCCCCccCCCCCCCCCCcceEE---ECCeEEEEEEecCCcccccccCCCcceEE
Confidence 466666555567888865 344332222112222666666667775 899999987754311 124578
Q ss_pred EEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEe-eCCEEEEEeecCCeEEEEECCCCceEE
Q 018005 279 LWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVARRTWHW 344 (362)
Q Consensus 279 vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~~~w~~ 344 (362)
||.+ +++ =.++.+=.. ...-.++ ...+ ..+| -.+.|.+.....+.|-+||+.++++.-
T Consensus 226 vFd~--~G~l~~r~as~g~--LNaPWG~---a~AP-a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g 285 (336)
T TIGR03118 226 VFTL--NGQLLRRVASSGR--LNAPWGL---AIAP-ESFGSLSGALLVGNFGDGTINAYDPQSGAQLG 285 (336)
T ss_pred EEcC--CCcEEEEeccCCc--ccCCcee---eeCh-hhhCCCCCCeEEeecCCceeEEecCCCCceee
Confidence 8844 344 222221100 0000000 0000 0111 234466665567789999998887654
No 141
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=43.34 E-value=2.7e+02 Score=25.61 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=50.2
Q ss_pred cCCcEEEEEEcCCCeeecCCCCCcccccCCCCc-ccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEe
Q 018005 214 PEPFSIVRFDLENGIWETPNDANDHMTMMLPHE-LTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVE 292 (362)
Q Consensus 214 ~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~-~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~ 292 (362)
....++-..|+++++...- ++.- .....+.+ ..-.=|++.. +....+.+|+|+ +++
T Consensus 170 s~DrtikIwDlatg~Lklt----------ltGhi~~vr~vav---S~rHpYlFs~----gedk~VKCwDLe-~nk----- 226 (460)
T KOG0285|consen 170 SADRTIKIWDLATGQLKLT----------LTGHIETVRGVAV---SKRHPYLFSA----GEDKQVKCWDLE-YNK----- 226 (460)
T ss_pred CCCceeEEEEcccCeEEEe----------ecchhheeeeeee---cccCceEEEe----cCCCeeEEEech-hhh-----
Confidence 3344677888888877652 2211 11223332 3333444443 234789999995 331
Q ss_pred cccHHHHHHhhhccccCCccEEEEeeC--CEEEEEeecCCeEEEEECCCC
Q 018005 293 RVPEMMCRKFMSVCYHNYDHVYCFWHQ--GMICVCCYTWPEILYYNVARR 340 (362)
Q Consensus 293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~v~~yd~~~~ 340 (362)
..+.+. ++...++|...- ..+++.++....+-+||++++
T Consensus 227 -----vIR~Yh----GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 227 -----VIRHYH----GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred -----hHHHhc----cccceeEEEeccccceeEEecCCcceEEEeeeccc
Confidence 122222 344556666432 335555544456788888876
No 142
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.07 E-value=96 Score=30.60 Aligned_cols=118 Identities=13% Similarity=0.204 Sum_probs=62.0
Q ss_pred ECCEEEEEecCCcEEEEEEcCCCe-eecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEEC
Q 018005 205 YKGSLYFTTPEPFSIVRFDLENGI-WETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (362)
Q Consensus 205 ~~G~ly~~~~~~~~i~~~D~~~~~-w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~ 283 (362)
.+|+...-.....++-+.+...+- |..-..-. .-.+..+.... + -+..|.+-+| ....|-+|.++
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~------H~DYVkcla~~-a--k~~~lvaSgG-----LD~~IflWDin 148 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT------HKDYVKCLAYI-A--KNNELVASGG-----LDRKIFLWDIN 148 (735)
T ss_pred cCCCceEEecCCceEEEeecccCcchhHhhhhc------ccchheeeeec-c--cCceeEEecC-----CCccEEEEEcc
Confidence 345544444555678888877553 43210000 22333343333 2 5666777766 44889999986
Q ss_pred CCCCEEEEecccHHHHHHhhhccccCCccEEEEeeC--CEEEEEeecCCeEEEEECCCC
Q 018005 284 CGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQ--GMICVCCYTWPEILYYNVARR 340 (362)
Q Consensus 284 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~v~~yd~~~~ 340 (362)
...+ +.+++........+. .+....++.++.+ +.+++.++.++-+.+||++++
T Consensus 149 ~~~~-~l~~s~n~~t~~sl~---sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~ 203 (735)
T KOG0308|consen 149 TGTA-TLVASFNNVTVNSLG---SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC 203 (735)
T ss_pred Ccch-hhhhhccccccccCC---CCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence 4322 222222111111111 0223445555443 457887777778999999987
No 143
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=41.82 E-value=2.8e+02 Score=25.50 Aligned_cols=239 Identities=11% Similarity=0.028 Sum_probs=113.3
Q ss_pred ceeeeeeCCCCCeE-eecCCcC--C-CCCCceEEEecCCc-eEEEecCC-CCeEEEEeCCcCceee-ccCCCCCCccceE
Q 018005 76 DQYPLYDSTHGTWR-RLSLPYS--L-LLPSAATLLSSSKG-LLCFSLPS-SSSFLVCNLVTLSSRT-IDFPTYPFDFELL 148 (362)
Q Consensus 76 ~~~~~~d~~~~~w~-~~~~~~~--~-~~~~~~~~~~s~~G-ll~~~~~~-~~~~~v~NP~t~~w~~-lP~~~~~~~~~~~ 148 (362)
..+..+|+.+.+-. ++++|.. + -......+..+-+| .+++.... ...+.|.|..+++... +|-+. +..
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-----~~~ 151 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-----CYH 151 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-----CcE
Confidence 45778999887543 4665521 0 01122233445555 78877644 6899999999999754 44321 122
Q ss_pred EEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCc-cccccCCCccc--EEECCEEEEEecCCcEEEEEEcC
Q 018005 149 TLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPS-MILSQSSHQEG--VFYKGSLYFTTPEPFSIVRFDLE 225 (362)
Q Consensus 149 ~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~-~~~~~~~~~~~--v~~~G~ly~~~~~~~~i~~~D~~ 225 (362)
.|......|-+.+..+. .....++.. ++ .... ..+. ..-......++ .-.+|+.+|++.. ..+.+.|+.
T Consensus 152 vy~t~e~~~~~~~~Dg~---~~~v~~d~~-g~-~~~~--~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~ 223 (352)
T TIGR02658 152 IFPTANDTFFMHCRDGS---LAKVGYGTK-GN-PKIK--PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLS 223 (352)
T ss_pred EEEecCCccEEEeecCc---eEEEEecCC-Cc-eEEe--eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecC
Confidence 23222222233322221 011111111 11 1111 1110 00000011222 2336888888877 478888854
Q ss_pred C------CeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeec--CCccceEEEEEECCCCCEEEEecccHH
Q 018005 226 N------GIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGR--NGISTTMKLWELGCGGNWIEVERVPEM 297 (362)
Q Consensus 226 ~------~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~--~~~~~~i~vw~l~~~~~W~~v~~~p~~ 297 (362)
. ..|..+.... ....+.|.+..-..+-. -+++|||...... ......-+||.+| ..+++.+.+++..
T Consensus 224 ~~~~~~~~~~~~~~~~~-~~~~wrP~g~q~ia~~~---dg~~lyV~~~~~~~~thk~~~~~V~ViD-~~t~kvi~~i~vG 298 (352)
T TIGR02658 224 SGDAKFLPAIEAFTEAE-KADGWRPGGWQQVAYHR---ARDRIYLLADQRAKWTHKTASRFLFVVD-AKTGKRLRKIELG 298 (352)
T ss_pred CCcceecceeeeccccc-cccccCCCcceeEEEcC---CCCEEEEEecCCccccccCCCCEEEEEE-CCCCeEEEEEeCC
Confidence 3 2454432110 00112344333333321 3577888543111 0111223677775 4568888877521
Q ss_pred HHHHhhhccccCCc-cEEEEeeCC-EEEEEeecCCeEEEEECCCCceE
Q 018005 298 MCRKFMSVCYHNYD-HVYCFWHQG-MICVCCYTWPEILYYNVARRTWH 343 (362)
Q Consensus 298 ~~~~~~~~~~~~~~-~~~~~~~~~-~i~~~~~~~~~v~~yd~~~~~w~ 343 (362)
... .+..-.++. ++|+.....+.|.++|..+.+-.
T Consensus 299 -----------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 299 -----------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred -----------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 111 122223456 77877766778999999987433
No 144
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.68 E-value=2.6e+02 Score=25.03 Aligned_cols=103 Identities=11% Similarity=0.133 Sum_probs=55.8
Q ss_pred EEEEEEcCCCeeecCCCCC-cccccCCCCccc--cccee-ecccCCCeEEEEEEeecCCccceEEEEEECCCC-CEEEEe
Q 018005 218 SIVRFDLENGIWETPNDAN-DHMTMMLPHELT--FFRLV-NDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVE 292 (362)
Q Consensus 218 ~i~~~D~~~~~w~~~~~p~-~~~~~~~p~~~~--~~~lv-~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~ 292 (362)
.+..||.++++-+.+.... + .+..+. -..++ .. .+++|++... .....+.||+++..+ .=+++.
T Consensus 79 HVH~yd~e~~~VrLLWkesih-----~~~~WaGEVSdIlYdP--~~D~LLlAR~----DGh~nLGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 79 HVHEYDTENDSVRLLWKESIH-----DKTKWAGEVSDILYDP--YEDRLLLARA----DGHANLGVYSLDRRTGKAEKLS 147 (339)
T ss_pred eEEEEEcCCCeEEEEEecccC-----CccccccchhheeeCC--CcCEEEEEec----CCcceeeeEEEcccCCceeecc
Confidence 5889999988776653221 0 222222 12233 12 5788888876 345789999998543 333333
Q ss_pred cccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCceE
Q 018005 293 RVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWH 343 (362)
Q Consensus 293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~ 343 (362)
+-|.. .+ ....+..|++..+ + ...-..+.+||+.+++|.
T Consensus 148 ~~ps~-----KG---~~~~D~a~F~i~~---~-~~g~~~i~~~Dli~~~~~ 186 (339)
T PF09910_consen 148 SNPSL-----KG---TLVHDYACFGINN---F-HKGVSGIHCLDLISGKWV 186 (339)
T ss_pred CCCCc-----Cc---eEeeeeEEEeccc---c-ccCCceEEEEEccCCeEE
Confidence 32210 00 0112334444322 0 112357999999999993
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=41.08 E-value=3.4e+02 Score=26.19 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=41.6
Q ss_pred CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCC-cccccceeecccCCCeEEEEEEeecCCccceEEEEEECC
Q 018005 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (362)
Q Consensus 206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~-~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~ 284 (362)
||.--.+++...++-++|+...+-+.- .- ++. ...+..|... .+-+|+..+.. ...|.||+|..
T Consensus 476 dgrtLivGGeastlsiWDLAapTprik-ae-------ltssapaCyALa~s--pDakvcFsccs-----dGnI~vwDLhn 540 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIK-AE-------LTSSAPACYALAIS--PDAKVCFSCCS-----DGNIAVWDLHN 540 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchh-hh-------cCCcchhhhhhhcC--Cccceeeeecc-----CCcEEEEEccc
Confidence 788777887777788888877554431 11 333 2345555533 68888887653 36789998853
No 146
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=40.98 E-value=45 Score=23.72 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=13.6
Q ss_pred CeEEEEECCCCceEEc
Q 018005 330 PEILYYNVARRTWHWL 345 (362)
Q Consensus 330 ~~v~~yd~~~~~w~~~ 345 (362)
+.++.||+++++.+.+
T Consensus 37 GRll~ydp~t~~~~vl 52 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVL 52 (89)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred cCEEEEECCCCeEEEe
Confidence 4589999999998775
No 147
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=40.26 E-value=44 Score=24.66 Aligned_cols=41 Identities=12% Similarity=-0.077 Sum_probs=25.2
Q ss_pred CeEEEEeCCcC-ceeeccCCCCCCccceEEEEeCCCceEEEEEee
Q 018005 121 SSFLVCNLVTL-SSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFA 164 (362)
Q Consensus 121 ~~~~v~NP~t~-~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~ 164 (362)
.+++++||.|+ .|....+ ... .-.+=++.....|+|+.+.+
T Consensus 11 A~V~~yd~~tKk~WvPs~~--~~~-~V~~y~~~~~ntfRIi~~~~ 52 (111)
T cd01206 11 AHVFQIDPKTKKNWIPASK--HAV-TVSYFYDSTRNVYRIISVGG 52 (111)
T ss_pred eEEEEECCCCcceeEeCCC--Cce-eEEEEecCCCcEEEEEEecC
Confidence 47899999986 8876543 111 11122335566788888665
No 148
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=39.60 E-value=2.8e+02 Score=24.89 Aligned_cols=96 Identities=23% Similarity=0.219 Sum_probs=49.9
Q ss_pred CeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCC-eeecCCCCCcccccCCCC
Q 018005 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENG-IWETPNDANDHMTMMLPH 245 (362)
Q Consensus 169 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~-~w~~~~~p~~~~~~~~p~ 245 (362)
..+.+||..|-+=-... .|..... ..-..|-. .|++|+.+.....|-.+|=-++ +-..+... .-.
T Consensus 238 p~~rlYdv~T~Qcfvsa---nPd~qht--~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-------H~g 305 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSA---NPDDQHT--GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-------HGG 305 (430)
T ss_pred CceeEEeccceeEeeec---Ccccccc--cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh-------cCC
Confidence 47889998874433332 2431111 11122222 5999998877666777774433 33333211 111
Q ss_pred cccccceeecccCCCeEEEEEEeecCCccceEEEEEECC
Q 018005 246 ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (362)
Q Consensus 246 ~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~ 284 (362)
...+...+ . .+|+..+-.| -...+.+|++..
T Consensus 306 sevcSa~F-t--kn~kyiLsSG-----~DS~vkLWEi~t 336 (430)
T KOG0640|consen 306 SEVCSAVF-T--KNGKYILSSG-----KDSTVKLWEIST 336 (430)
T ss_pred ceeeeEEE-c--cCCeEEeecC-----CcceeeeeeecC
Confidence 12233444 2 6677655554 237789998853
No 149
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=39.29 E-value=2.6e+02 Score=24.27 Aligned_cols=115 Identities=12% Similarity=0.260 Sum_probs=55.4
Q ss_pred CEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCC
Q 018005 207 GSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG 286 (362)
Q Consensus 207 G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~ 286 (362)
|.+...+++. .+...|+++++++..-.- ..++. +.++. -+..|+++- |+ ...++.||++....
T Consensus 127 nSi~~AgGD~-~~y~~dlE~G~i~r~~rG-------HtDYv--H~vv~-R~~~~qils-G~-----EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 127 NSILFAGGDG-VIYQVDLEDGRIQREYRG-------HTDYV--HSVVG-RNANGQILS-GA-----EDGTVRVWDTKTQK 189 (325)
T ss_pred CcEEEecCCe-EEEEEEecCCEEEEEEcC-------Cccee--eeeee-cccCcceee-cC-----CCccEEEEeccccc
Confidence 6666656543 688889999988764212 22222 22321 014555432 22 24788999885332
Q ss_pred CEEEEecccHHHHHHhhhccccCCccEEEE-eeCCEEEEEeecCCeEEEEECCCCceEEc
Q 018005 287 NWIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVARRTWHWL 345 (362)
Q Consensus 287 ~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~~~~~w~~~ 345 (362)
. +..|...-.....+...+.+ +.++ ++.+ .+..+..+.+-.|+++..+=..+
T Consensus 190 ~---v~~ie~yk~~~~lRp~~g~w--igala~~ed--WlvCGgGp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 190 H---VSMIEPYKNPNLLRPDWGKW--IGALAVNED--WLVCGGGPKLSLWHLRSSESTCV 242 (325)
T ss_pred e---eEEeccccChhhcCcccCce--eEEEeccCc--eEEecCCCceeEEeccCCCceEE
Confidence 2 22221111111222111222 1233 3333 33334567788888887755444
No 150
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=38.94 E-value=3e+02 Score=24.93 Aligned_cols=137 Identities=10% Similarity=0.134 Sum_probs=69.8
Q ss_pred cccEEECCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccc-cceeecccCCCeEEEEEEeecCCccceEE
Q 018005 200 QEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTF-FRLVNDGEESNKLYLIGGVGRNGISTTMK 278 (362)
Q Consensus 200 ~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~-~~lv~~~~~~G~L~vv~~~~~~~~~~~i~ 278 (362)
++.+.-+|.+++++..-..+..+|+.- .|.....|+ .+....|+++.+ ..|. . .+|+..-+.... ..+...
T Consensus 106 Hdia~~~~~l~fVNT~fSCLatl~~~~-SF~P~WkPp-FIs~la~eDRCHLNGlA-~--~~g~p~yVTa~~---~sD~~~ 177 (335)
T TIGR03032 106 HDLALGAGRLLFVNTLFSCLATVSPDY-SFVPLWKPP-FISKLAPEDRCHLNGMA-L--DDGEPRYVTALS---QSDVAD 177 (335)
T ss_pred hheeecCCcEEEEECcceeEEEECCCC-ccccccCCc-cccccCccCceeeccee-e--eCCeEEEEEEee---ccCCcc
Confidence 445555677887776655666666642 233333331 112223555444 3344 3 688865554432 122222
Q ss_pred EEEECCCCC--EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCceEEcCCCCCCC
Q 018005 279 LWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLP 352 (362)
Q Consensus 279 vw~l~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~ 352 (362)
=|+-...+. =..+.+- +.. .-+..|.+... ++++.+++.....+++..+|+++++.+.+..+|-.+
T Consensus 178 gWR~~~~~gG~vidv~s~--evl--~~GLsmPhSPR----WhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~ 245 (335)
T TIGR03032 178 GWREGRRDGGCVIDIPSG--EVV--ASGLSMPHSPR----WYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFT 245 (335)
T ss_pred cccccccCCeEEEEeCCC--CEE--EcCccCCcCCc----EeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCC
Confidence 332221111 1111100 000 00011122222 578899999888899999999999999987777543
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=37.10 E-value=2.7e+02 Score=23.88 Aligned_cols=197 Identities=14% Similarity=0.082 Sum_probs=88.6
Q ss_pred cCCc-eEEEecCCCCeEEEEeCCcCceee-ccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccc
Q 018005 108 SSKG-LLCFSLPSSSSFLVCNLVTLSSRT-IDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD 185 (362)
Q Consensus 108 s~~G-ll~~~~~~~~~~~v~NP~t~~w~~-lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~ 185 (362)
+.+| .+++.....+.+.+||+.+++... ++.... ...+++.+.+ -++++... ....+.+||..++.= ..
T Consensus 39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~~g--~~l~~~~~--~~~~l~~~d~~~~~~--~~ 109 (300)
T TIGR03866 39 SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD---PELFALHPNG--KILYIANE--DDNLVTVIDIETRKV--LA 109 (300)
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC---ccEEEECCCC--CEEEEEcC--CCCeEEEEECCCCeE--Ee
Confidence 3444 455544445789999999987644 332211 1233343332 23444332 234788999876431 11
Q ss_pred cCCCCccccccCCCcccEEE--CCEEEEEecCC-cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeE
Q 018005 186 IDGFPSMILSQSSHQEGVFY--KGSLYFTTPEP-FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKL 262 (362)
Q Consensus 186 ~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~-~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L 262 (362)
.++. . .....+.+ +|.+.+++... ..+..||..+.+..... + .........+. -+|+.
T Consensus 110 --~~~~---~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~-~-------~~~~~~~~~~s----~dg~~ 170 (300)
T TIGR03866 110 --EIPV---G--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV-L-------VDQRPRFAEFT----ADGKE 170 (300)
T ss_pred --EeeC---C--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE-E-------cCCCccEEEEC----CCCCE
Confidence 1111 0 11122322 56666555432 34666788765432210 1 11111111221 46765
Q ss_pred EEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccE-EEE-eeCCEEEEEeecCCeEEEEECCCC
Q 018005 263 YLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHV-YCF-WHQGMICVCCYTWPEILYYNVARR 340 (362)
Q Consensus 263 ~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~~~~~v~~yd~~~~ 340 (362)
+++.. .....+.+|.++.. . .+.++..... .... ...... ..+ ..+..+++.....+.+.+||+++.
T Consensus 171 l~~~~----~~~~~v~i~d~~~~-~--~~~~~~~~~~-~~~~---~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 171 LWVSS----EIGGTVSVIDVATR-K--VIKKITFEIP-GVHP---EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred EEEEc----CCCCEEEEEEcCcc-e--eeeeeeeccc-cccc---ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 55543 12367889977532 2 2222210000 0000 000011 112 234555665444567889998876
Q ss_pred ceE
Q 018005 341 TWH 343 (362)
Q Consensus 341 ~w~ 343 (362)
+-.
T Consensus 240 ~~~ 242 (300)
T TIGR03866 240 EVL 242 (300)
T ss_pred cEE
Confidence 544
No 152
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=36.18 E-value=2.2e+02 Score=25.27 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=21.6
Q ss_pred CEEEEEeecCCeEEEEECCCC-ceEEcCC
Q 018005 320 GMICVCCYTWPEILYYNVARR-TWHWLPS 347 (362)
Q Consensus 320 ~~i~~~~~~~~~v~~yd~~~~-~w~~~~~ 347 (362)
+.+|+.......+++||++++ .|+.+..
T Consensus 78 ~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 78 GFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred eEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 478888766679999999996 5555544
No 153
>PTZ00421 coronin; Provisional
Probab=36.04 E-value=4.1e+02 Score=25.74 Aligned_cols=199 Identities=10% Similarity=0.071 Sum_probs=89.8
Q ss_pred CceEEEecCCCCeEEEEeCCcCceeecc--C---C-CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccc
Q 018005 110 KGLLCFSLPSSSSFLVCNLVTLSSRTID--F---P-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK 183 (362)
Q Consensus 110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP--~---~-~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~ 183 (362)
++-+++.+..++.+.+||..++....-. + . ........+.+.+... .+++.++ ....+.+||.+++.=..
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~--~iLaSgs--~DgtVrIWDl~tg~~~~ 162 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM--NVLASAG--ADMVVNVWDVERGKAVE 162 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC--CEEEEEe--CCCEEEEEECCCCeEEE
Confidence 4433344444678899997665321100 0 0 0111122333433221 2343333 34678999998763211
Q ss_pred -cccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeee-cCCCCCcccccCCCCcccccceeecccCC
Q 018005 184 -FDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWE-TPNDANDHMTMMLPHELTFFRLVNDGEES 259 (362)
Q Consensus 184 -~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~-~~~~p~~~~~~~~p~~~~~~~lv~~~~~~ 259 (362)
.. ... ..-..+.+ +|.+.+.+.....|..||+.+.+-. .+. . .........+.. .+
T Consensus 163 ~l~--~h~-------~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~-------H~~~~~~~~~w~---~~ 222 (493)
T PTZ00421 163 VIK--CHS-------DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-A-------HASAKSQRCLWA---KR 222 (493)
T ss_pred EEc--CCC-------CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-c-------CCCCcceEEEEc---CC
Confidence 11 111 01112222 5776666666668999999875432 111 1 111111111221 33
Q ss_pred CeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEE-eeCCEEEEEeecCCeEEEEEC
Q 018005 260 NKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNV 337 (362)
Q Consensus 260 G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~ 337 (362)
+.+.+..+.. ......+.+|++..... .... .+.. ........+ ..++.+++.+...+.|.+||+
T Consensus 223 ~~~ivt~G~s-~s~Dr~VklWDlr~~~~p~~~~-~~d~-----------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 223 KDLIITLGCS-KSQQRQIMLWDTRKMASPYSTV-DLDQ-----------SSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCeEEEEecC-CCCCCeEEEEeCCCCCCceeEe-ccCC-----------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 3444443321 12346799998753332 2211 1100 000111112 234566665545667889999
Q ss_pred CCCceEEc
Q 018005 338 ARRTWHWL 345 (362)
Q Consensus 338 ~~~~w~~~ 345 (362)
.+++....
T Consensus 290 ~~~~~~~~ 297 (493)
T PTZ00421 290 MNERLTFC 297 (493)
T ss_pred eCCceEEE
Confidence 88876554
No 154
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=35.28 E-value=2.8e+02 Score=26.79 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=33.7
Q ss_pred cEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEe
Q 018005 202 GVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGV 268 (362)
Q Consensus 202 ~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~ 268 (362)
.+..+|.+|+-..+ ..+.++|.++. .|+. . ++.......++.+ .+|++|+....
T Consensus 402 ~~~~g~~v~~g~~d-G~l~ald~~tG~~lW~~-~---------~~~~~~a~P~~~~--~~g~~yv~~~~ 457 (488)
T cd00216 402 LATAGNLVFAGAAD-GYFRAFDATTGKELWKF-R---------TPSGIQATPMTYE--VNGKQYVGVMV 457 (488)
T ss_pred eEecCCeEEEECCC-CeEEEEECCCCceeeEE-E---------CCCCceEcCEEEE--eCCEEEEEEEe
Confidence 45566777765544 47999999864 6664 3 4444333333212 79999998764
No 155
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=35.13 E-value=4.1e+02 Score=25.37 Aligned_cols=106 Identities=15% Similarity=0.254 Sum_probs=56.6
Q ss_pred CCEEEEEecCCcEEEEEEcCCC-ee-ecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEEC
Q 018005 206 KGSLYFTTPEPFSIVRFDLENG-IW-ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (362)
Q Consensus 206 ~G~ly~~~~~~~~i~~~D~~~~-~w-~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~ 283 (362)
+|....-+....++-++|.... .- ..+. . ++......... -.|.+.+.+. ...++.||++.
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-g-------H~~~v~~~~f~----p~g~~i~Sgs-----~D~tvriWd~~ 276 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-G-------HSTYVTSVAFS----PDGNLLVSGS-----DDGTVRIWDVR 276 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEEec-C-------CCCceEEEEec----CCCCEEEEec-----CCCcEEEEecc
Confidence 5664444455668899999433 22 2222 2 33333333332 5677777765 34889999885
Q ss_pred CCCCEEEEecccHHHHHHhhhccccCCccE--EEEeeCCEEEEEeecCCeEEEEECCCCceE
Q 018005 284 CGGNWIEVERVPEMMCRKFMSVCYHNYDHV--YCFWHQGMICVCCYTWPEILYYNVARRTWH 343 (362)
Q Consensus 284 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~ 343 (362)
. ++=. ..+. .+...+ .++..++.+++.....+.+.+||+.+.+-.
T Consensus 277 ~-~~~~--~~l~------------~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 277 T-GECV--RKLK------------GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred C-CeEE--Eeee------------ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 3 3211 1111 111122 233334444444445678999999999843
No 156
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=33.71 E-value=3.3e+02 Score=25.69 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=36.7
Q ss_pred CEEEEEec---CCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEee-cCCccceEEEEEE
Q 018005 207 GSLYFTTP---EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVG-RNGISTTMKLWEL 282 (362)
Q Consensus 207 G~ly~~~~---~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~-~~~~~~~i~vw~l 282 (362)
..+|+.-. ....++.||+-..+.. .| +. ..+.++. -+|+|++..... .......++||.-
T Consensus 320 DvLYvF~~~~~g~~~Ll~YN~I~k~v~---tP-------i~--chG~alf----~DG~l~~fra~~~EptrvHp~QiWqT 383 (448)
T PF12458_consen 320 DVLYVFYAREEGRYLLLPYNLIRKEVA---TP-------II--CHGYALF----EDGRLVYFRAEGDEPTRVHPMQIWQT 383 (448)
T ss_pred eEEEEEEECCCCcEEEEechhhhhhhc---CC-------ee--ccceeEe----cCCEEEEEecCCCCcceeccceeecC
Confidence 36666532 3356889988765543 34 32 2345676 599999998642 2234566899954
No 157
>smart00284 OLF Olfactomedin-like domains.
Probab=33.40 E-value=3.3e+02 Score=23.77 Aligned_cols=142 Identities=14% Similarity=0.153 Sum_probs=72.0
Q ss_pred CCceEEEecCCCCeEEEEeCCcCce---eeccCCCCC----C-----ccceEEEEeCCCceEEEEEeeecCCCeEEEEeC
Q 018005 109 SKGLLCFSLPSSSSFLVCNLVTLSS---RTIDFPTYP----F-----DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDS 176 (362)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~w---~~lP~~~~~----~-----~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s 176 (362)
-+|-++.....+..+.=+|..|+.- ..||..... . ....++++.. +--.|++.....+...+-.-|+
T Consensus 82 YngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~-GLWvIYat~~~~g~ivvSkLnp 160 (255)
T smart00284 82 YNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDEN-GLWVIYATEQNAGKIVISKLNP 160 (255)
T ss_pred ECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCC-ceEEEEeccCCCCCEEEEeeCc
Confidence 4676777665567788899999886 445533211 1 1123343322 2223333222111112233333
Q ss_pred C----CCcccccccCCCCccccccCCCcccEEECCEEEEEec----CCcEEEEEEcCCCeeecCCCCCcccccCCCCccc
Q 018005 177 T----DQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTP----EPFSIVRFDLENGIWETPNDANDHMTMMLPHELT 248 (362)
Q Consensus 177 ~----~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~----~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~ 248 (362)
. .++|.+.. +. +....+-.+-|+||.+.. ......+||+.+++-..+..| ++....
T Consensus 161 ~tL~ve~tW~T~~----~k-----~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~-------f~n~y~ 224 (255)
T smart00284 161 ATLTIENTWITTY----NK-----RSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP-------FENMYE 224 (255)
T ss_pred ccceEEEEEEcCC----Cc-----ccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeee-------eccccc
Confidence 3 36787643 21 123345566799999964 223468999998765544444 444333
Q ss_pred ccceeecccCCCeEEEEEE
Q 018005 249 FFRLVNDGEESNKLYLIGG 267 (362)
Q Consensus 249 ~~~lv~~~~~~G~L~vv~~ 267 (362)
....+..-=.+.+||+-..
T Consensus 225 ~~s~l~YNP~d~~LY~wdn 243 (255)
T smart00284 225 YISMLDYNPNDRKLYAWNN 243 (255)
T ss_pred cceeceeCCCCCeEEEEeC
Confidence 3333310003667776643
No 158
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=31.58 E-value=3.6e+02 Score=23.75 Aligned_cols=158 Identities=13% Similarity=0.220 Sum_probs=81.1
Q ss_pred EEEEeeecCCCeEEEEeCC-CCcccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCC
Q 018005 159 IFMLFAKSFPNYAFVYDST-DQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDA 235 (362)
Q Consensus 159 v~~~~~~~~~~~~~vy~s~-~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p 235 (362)
+++.++ ....+.+++.. .++|.-... +.. ... ..-+.|.. .|+.-..+.-..++..|.-..++|..+..-
T Consensus 29 ilAscg--~Dk~vriw~~~~~~s~~ck~v--ld~--~hk-rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 29 ILASCG--TDKAVRIWSTSSGDSWTCKTV--LDD--GHK-RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL 101 (312)
T ss_pred EEEeec--CCceEEEEecCCCCcEEEEEe--ccc--cch-heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee
Confidence 444443 45678889887 788976641 111 111 12334444 566433333333555666666677664311
Q ss_pred CcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccE-E
Q 018005 236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHV-Y 314 (362)
Q Consensus 236 ~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~-~ 314 (362)
+ =++. +-..+.-. .+|.++..+. +.+.+-||+.++++..+-++-+-+. ...+ .
T Consensus 102 E------GHEn-EVK~Vaws--~sG~~LATCS-----RDKSVWiWe~deddEfec~aVL~~H------------tqDVK~ 155 (312)
T KOG0645|consen 102 E------GHEN-EVKCVAWS--ASGNYLATCS-----RDKSVWIWEIDEDDEFECIAVLQEH------------TQDVKH 155 (312)
T ss_pred e------cccc-ceeEEEEc--CCCCEEEEee-----CCCeEEEEEecCCCcEEEEeeeccc------------cccccE
Confidence 0 1111 11122212 5677666654 3488999999877777766655221 1111 2
Q ss_pred EEeeC--CEEEEEeecCCeEEEEECC-CCceEEcCCCCC
Q 018005 315 CFWHQ--GMICVCCYTWPEILYYNVA-RRTWHWLPSCPS 350 (362)
Q Consensus 315 ~~~~~--~~i~~~~~~~~~v~~yd~~-~~~w~~~~~~~~ 350 (362)
++.|. ++ .+...+.+.|-+|.-. .+.|..+..+-.
T Consensus 156 V~WHPt~dl-L~S~SYDnTIk~~~~~~dddW~c~~tl~g 193 (312)
T KOG0645|consen 156 VIWHPTEDL-LFSCSYDNTIKVYRDEDDDDWECVQTLDG 193 (312)
T ss_pred EEEcCCcce-eEEeccCCeEEEEeecCCCCeeEEEEecC
Confidence 33444 43 3333345666666665 666766654433
No 159
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=30.52 E-value=1.4e+02 Score=26.45 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=32.1
Q ss_pred EEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEE
Q 018005 219 IVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWEL 282 (362)
Q Consensus 219 i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l 282 (362)
+.-+|++-++.+....|+ +-++..++--+ . .++.+|++||..-......-.+|++
T Consensus 133 VfLiDleFGC~tah~lpE------l~dG~SFHvsl-a--r~D~VYilGGHsl~sd~Rpp~l~rl 187 (337)
T PF03089_consen 133 VFLIDLEFGCCTAHTLPE------LQDGQSFHVSL-A--RNDCVYILGGHSLESDSRPPRLYRL 187 (337)
T ss_pred EEEEeccccccccccchh------hcCCeEEEEEE-e--cCceEEEEccEEccCCCCCCcEEEE
Confidence 556677777666655443 44555544434 3 8999999999653222333344544
No 160
>PLN00181 protein SPA1-RELATED; Provisional
Probab=30.18 E-value=6.4e+02 Score=26.11 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=29.9
Q ss_pred EEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECC
Q 018005 211 FTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC 284 (362)
Q Consensus 211 ~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~ 284 (362)
..++...++..+|..+.+-...... ..... ..+... -.+|.+++.++ ...++.+|.+..
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~-------H~~~V--~~l~~~-p~~~~~L~Sgs-----~Dg~v~iWd~~~ 607 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKE-------HEKRV--WSIDYS-SADPTLLASGS-----DDGSVKLWSINQ 607 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecC-------CCCCE--EEEEEc-CCCCCEEEEEc-----CCCEEEEEECCC
Confidence 3344445788899876543221101 11111 122210 02566766665 237899998853
No 161
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.01 E-value=76 Score=27.24 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=32.9
Q ss_pred EeeCCEEEEEeecCCeEEEEECCCCceEEcCCCCCCCCCCCcce
Q 018005 316 FWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359 (362)
Q Consensus 316 ~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~ 359 (362)
+..++.+|+...+.+.|...|+.+++.-.--.+| .+..-||.|
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccF 261 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCF 261 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEe
Confidence 3345668999888999999999999877665666 566667766
No 162
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.66 E-value=3.7e+02 Score=23.23 Aligned_cols=99 Identities=8% Similarity=0.042 Sum_probs=52.6
Q ss_pred CCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCC
Q 018005 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH 199 (362)
Q Consensus 120 ~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~ 199 (362)
++.+.+|+-.||+-.+-=. ...-....+.|... -.|++-++ ...++.+||-..+.-+.+++ +.. ....
T Consensus 80 Dk~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNee---sSVv~Sgs--fD~s~r~wDCRS~s~ePiQi--lde----a~D~ 147 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFR-GHLAQVNTVRFNEE---SSVVASGS--FDSSVRLWDCRSRSFEPIQI--LDE----AKDG 147 (307)
T ss_pred CceEEEEEcccCeeeeecc-cccceeeEEEecCc---ceEEEecc--ccceeEEEEcccCCCCccch--hhh----hcCc
Confidence 6789999999998543100 00001112223211 13444333 34577888887776666652 111 1122
Q ss_pred cccEEECCEEEEEecCCcEEEEEEcCCCeee
Q 018005 200 QEGVFYKGSLYFTTPEPFSIVRFDLENGIWE 230 (362)
Q Consensus 200 ~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~ 230 (362)
-..+.+++-....+.-..++-.||+..++-.
T Consensus 148 V~Si~v~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 148 VSSIDVAEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred eeEEEecccEEEeeccCCcEEEEEeecceee
Confidence 3345556655554544457889999876553
No 163
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=29.33 E-value=3.8e+02 Score=23.26 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=73.0
Q ss_pred CCceEEEecCCCCeEEEEeCCcCcee---eccCCCCCC---------ccceEEEEeCCCceEEEEEeeecCCCeEEEEeC
Q 018005 109 SKGLLCFSLPSSSSFLVCNLVTLSSR---TIDFPTYPF---------DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDS 176 (362)
Q Consensus 109 ~~Gll~~~~~~~~~~~v~NP~t~~w~---~lP~~~~~~---------~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s 176 (362)
-+|-++.....+..+.-+|..|+.-. .||...... ....++++. .+--.|++.....+...+-.-|+
T Consensus 77 YngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~~g~ivvskld~ 155 (250)
T PF02191_consen 77 YNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDNNGNIVVSKLDP 155 (250)
T ss_pred ECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcC-CCEEEEEecCCCCCcEEEEeeCc
Confidence 46666666656678899999998855 555443220 111233332 22222332222111122333343
Q ss_pred C----CCcccccccCCCCccccccCCCcccEEECCEEEEEecC----CcEEEEEEcCCCeeecCCCCCcccccCCCCccc
Q 018005 177 T----DQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE----PFSIVRFDLENGIWETPNDANDHMTMMLPHELT 248 (362)
Q Consensus 177 ~----~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~----~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~ 248 (362)
. ..+|.+.- +. .....+-.+-|.||++... .....+||+.+++-..+..+ ++....
T Consensus 156 ~tL~v~~tw~T~~----~k-----~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~-------f~~~~~ 219 (250)
T PF02191_consen 156 ETLSVEQTWNTSY----PK-----RSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP-------FPNPYG 219 (250)
T ss_pred ccCceEEEEEecc----Cc-----hhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeee-------eccccC
Confidence 3 35676543 11 1223455667999999653 23458999998877665545 444333
Q ss_pred ccceeecccCCCeEEEEEE
Q 018005 249 FFRLVNDGEESNKLYLIGG 267 (362)
Q Consensus 249 ~~~lv~~~~~~G~L~vv~~ 267 (362)
....+..-=.+.+||+-..
T Consensus 220 ~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 220 NISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred ceEeeeECCCCCeEEEEEC
Confidence 3333310003666777653
No 164
>PRK13684 Ycf48-like protein; Provisional
Probab=28.01 E-value=4.6e+02 Score=23.78 Aligned_cols=162 Identities=10% Similarity=0.100 Sum_probs=0.0
Q ss_pred CceeeccCC-CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCC--CcccccccCCCCccccccCCCcccEEECC
Q 018005 131 LSSRTIDFP-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD--QSWSKFDIDGFPSMILSQSSHQEGVFYKG 207 (362)
Q Consensus 131 ~~w~~lP~~-~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~--~~W~~~~~~~~p~~~~~~~~~~~~v~~~G 207 (362)
..|..++.. ..+.....+........+.+...+. +|.+.+ .+|+.... +... .........+
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~--------i~~S~DgG~tW~~~~~-~~~g------~~~~i~~~~~ 183 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGPGTAEMATNVGA--------IYRTTDGGKNWEALVE-DAAG------VVRNLRRSPD 183 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECCCcceeeeccce--------EEEECCCCCCceeCcC-CCcc------eEEEEEECCC
Q ss_pred EEEEEecCCcEEEEE-EcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCC
Q 018005 208 SLYFTTPEPFSIVRF-DLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG 286 (362)
Q Consensus 208 ~ly~~~~~~~~i~~~-D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~ 286 (362)
..|++.+....++.- |...++|+.+..+ ........... -+|++++++. ....+...++++
T Consensus 184 g~~v~~g~~G~i~~s~~~gg~tW~~~~~~-------~~~~l~~i~~~----~~g~~~~vg~-------~G~~~~~s~d~G 245 (334)
T PRK13684 184 GKYVAVSSRGNFYSTWEPGQTAWTPHQRN-------SSRRLQSMGFQ----PDGNLWMLAR-------GGQIRFNDPDDL 245 (334)
T ss_pred CeEEEEeCCceEEEEcCCCCCeEEEeeCC-------CcccceeeeEc----CCCCEEEEec-------CCEEEEccCCCC
Q ss_pred C-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEE
Q 018005 287 N-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVC 325 (362)
Q Consensus 287 ~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 325 (362)
. |+++..-.......+..+.+.....+..++.++.|+..
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S 285 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVS 285 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEe
No 165
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.97 E-value=79 Score=29.04 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=42.7
Q ss_pred cceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeC--CEEEEEeecCCeEEEEECCCCceEEcCCCCC
Q 018005 274 STTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQ--GMICVCCYTWPEILYYNVARRTWHWLPSCPS 350 (362)
Q Consensus 274 ~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~v~~yd~~~~~w~~~~~~~~ 350 (362)
...+++|+|+.... |+-- ..|.....-..+++ ..-..|-.+ +..++......++-.||.+ .+-+.+..+++
T Consensus 172 ~n~lkiwdle~~~qiw~aK-NvpnD~L~LrVPvW----~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~-~qRRPV~~fd~ 245 (412)
T KOG3881|consen 172 INELKIWDLEQSKQIWSAK-NVPNDRLGLRVPVW----ITDIRFLEGSPNYKFATITRYHQVRLYDTR-HQRRPVAQFDF 245 (412)
T ss_pred ccceeeeecccceeeeecc-CCCCccccceeeee----eccceecCCCCCceEEEEecceeEEEecCc-ccCcceeEecc
Confidence 46789999965544 7733 33443332222222 111112222 5556665556788999998 44566666666
Q ss_pred CCCCCCc
Q 018005 351 LPHKWSC 357 (362)
Q Consensus 351 ~~~~~~~ 357 (362)
.-+..+|
T Consensus 246 ~E~~is~ 252 (412)
T KOG3881|consen 246 LENPISS 252 (412)
T ss_pred ccCccee
Confidence 5555554
No 166
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=27.87 E-value=6e+02 Score=25.08 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred ccccccccccCCCcceEEEEecCCCCceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCC
Q 018005 50 PSFLSKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLV 129 (362)
Q Consensus 50 ~~F~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~ 129 (362)
|.|.+--..+.+..-.++.-.+ ..++-++...++| +..-..-.......-+..+||||++.+. .+.+..|+|-
T Consensus 133 P~~GRDm~y~~~scDly~~gsg----~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~~hgLla~Gt~-~g~VEfwDpR 205 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGSG----SEVYRLNLEQGRF--LNPFETDSGELNVVSINEEHGLLACGTE-DGVVEFWDPR 205 (703)
T ss_pred CcCCccccccCCCccEEEeecC----cceEEEEcccccc--ccccccccccceeeeecCccceEEeccc-CceEEEecch
Q ss_pred cCc-------eeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc
Q 018005 130 TLS-------SRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS 180 (362)
Q Consensus 130 t~~-------w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~ 180 (362)
+++ -..++.-+.......+....-.++..=+++|. ....+.+||..+.+
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt--s~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT--STGSVLIYDLRASK 261 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec--cCCcEEEEEcccCC
No 167
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=27.01 E-value=4.6e+02 Score=23.48 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=62.4
Q ss_pred CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcc
Q 018005 168 PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHEL 247 (362)
Q Consensus 168 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~ 247 (362)
..++.+||..++.=+..-..++| --.+++.+-.--+.++-...+..||+.+..=..+... .
T Consensus 34 DgslrlYdv~~~~l~~~~~~~~p--------lL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth-----------~ 94 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFKHGAP--------LLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH-----------D 94 (323)
T ss_pred cCcEEEEeccchhhhhheecCCc--------eeeeeccCCceEEEeccCceEEEEEecCCcceeeccC-----------C
Confidence 45788898877722211100111 1234455544444455455799999987644433211 1
Q ss_pred cccceeecccCCCe-EEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEee-CCEEEEE
Q 018005 248 TFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWH-QGMICVC 325 (362)
Q Consensus 248 ~~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~ 325 (362)
....++ ++ .-+. ..+.++ -..+|++|+.-. . ..+.+. .....+++... ++.|++
T Consensus 95 ~~i~ci-~~-~~~~~~vIsgs-----WD~~ik~wD~R~--~-~~~~~~-------------d~~kkVy~~~v~g~~LvV- 150 (323)
T KOG1036|consen 95 EGIRCI-EY-SYEVGCVISGS-----WDKTIKFWDPRN--K-VVVGTF-------------DQGKKVYCMDVSGNRLVV- 150 (323)
T ss_pred CceEEE-Ee-eccCCeEEEcc-----cCccEEEEeccc--c-cccccc-------------ccCceEEEEeccCCEEEE-
Confidence 111222 11 1112 223333 247899995531 0 000110 11224556543 455555
Q ss_pred eecCCeEEEEECCCC
Q 018005 326 CYTWPEILYYNVARR 340 (362)
Q Consensus 326 ~~~~~~v~~yd~~~~ 340 (362)
+....++..||+++.
T Consensus 151 g~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNL 165 (323)
T ss_pred eecCceEEEEEcccc
Confidence 445678999999976
No 168
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=26.99 E-value=1.7e+02 Score=18.58 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=20.9
Q ss_pred CCCeEEEEEEeecCCccceEEEEEECCCCC
Q 018005 258 ESNKLYLIGGVGRNGISTTMKLWELGCGGN 287 (362)
Q Consensus 258 ~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~ 287 (362)
.+|||.+++............+.+|+.+++
T Consensus 10 ~DGkIlv~G~~~~~~~~~~~~l~Rln~DGs 39 (55)
T TIGR02608 10 SDGKILVAGYVDNSSGNNDFVLARLNADGS 39 (55)
T ss_pred CCCcEEEEEEeecCCCcccEEEEEECCCCC
Confidence 699999998754322345677888876653
No 169
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=26.83 E-value=6e+02 Score=25.47 Aligned_cols=67 Identities=7% Similarity=0.079 Sum_probs=38.3
Q ss_pred CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEE
Q 018005 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWEL 282 (362)
Q Consensus 206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l 282 (362)
+|..-.......++.+|++.+..=.....+ -|.+-+...++-. |+|++.++.|.+. .....+.+|+-
T Consensus 731 dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~-------gpvgtRgARi~wa--cdgr~viv~Gfdk-~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 731 DGRRIATVCKDGTLRVYEPRSREQPVYEGK-------GPVGTRGARILWA--CDGRIVIVVGFDK-SSERQVQMYDA 797 (1012)
T ss_pred CCcceeeeecCceEEEeCCCCCCCccccCC-------CCccCcceeEEEE--ecCcEEEEecccc-cchhhhhhhhh
Confidence 344433333445788999987544333333 3444444444434 9999999988653 23456667744
No 170
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=26.48 E-value=5.5e+02 Score=24.73 Aligned_cols=130 Identities=11% Similarity=0.130 Sum_probs=55.6
Q ss_pred CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCc--ccccceeecccCCCeEEEEEEee------cCCccceE
Q 018005 206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHE--LTFFRLVNDGEESNKLYLIGGVG------RNGISTTM 277 (362)
Q Consensus 206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~--~~~~~lv~~~~~~G~L~vv~~~~------~~~~~~~i 277 (362)
||.+++... ..+..+|...+...... +|.. ..+|.+... -+|.++++.... .......-
T Consensus 158 nG~ll~~~~--~~~~e~D~~G~v~~~~~---------l~~~~~~~HHD~~~l--~nGn~L~l~~~~~~~~~~~~~~~~~D 224 (477)
T PF05935_consen 158 NGNLLIGSG--NRLYEIDLLGKVIWEYD---------LPGGYYDFHHDIDEL--PNGNLLILASETKYVDEDKDVDTVED 224 (477)
T ss_dssp TS-EEEEEB--TEEEEE-TT--EEEEEE-----------TTEE-B-S-EEE---TTS-EEEEEEETTEE-TS-EE---S-
T ss_pred CCCEEEecC--CceEEEcCCCCEEEeee---------cCCcccccccccEEC--CCCCEEEEEeecccccCCCCccEecC
Confidence 688887766 36888998766443334 4442 234444422 466766665521 00011112
Q ss_pred EEEEECCCCC--EE--EEecccHHHH-----HHhhhc----cccCCccEEEE---eeCCEEEEEeecCCeEEEEECCCCc
Q 018005 278 KLWELGCGGN--WI--EVERVPEMMC-----RKFMSV----CYHNYDHVYCF---WHQGMICVCCYTWPEILYYNVARRT 341 (362)
Q Consensus 278 ~vw~l~~~~~--W~--~v~~~p~~~~-----~~~~~~----~~~~~~~~~~~---~~~~~i~~~~~~~~~v~~yd~~~~~ 341 (362)
.|-+++..++ |+ ...-+..... ..+... ....+.++..+ ..+|.|++..+....|+.-|.++++
T Consensus 225 ~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 225 VIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred EEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence 3556665554 33 2222211111 000000 01233445544 3468899998888899999999997
Q ss_pred eEEcCCC
Q 018005 342 WHWLPSC 348 (362)
Q Consensus 342 w~~~~~~ 348 (362)
-.++-..
T Consensus 305 i~Wilg~ 311 (477)
T PF05935_consen 305 IKWILGP 311 (477)
T ss_dssp EEEEES-
T ss_pred EEEEeCC
Confidence 7776333
No 171
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=26.40 E-value=3.4e+02 Score=24.37 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=21.1
Q ss_pred CEEEEEecCCcEEEEEEcCCCeeecCC
Q 018005 207 GSLYFTTPEPFSIVRFDLENGIWETPN 233 (362)
Q Consensus 207 G~ly~~~~~~~~i~~~D~~~~~w~~~~ 233 (362)
+.+||....+..|..||+.+..-+...
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~ 63 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRVFP 63 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEEEE
Confidence 678999887778999999876555544
No 172
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=26.16 E-value=1.3e+02 Score=16.89 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=16.9
Q ss_pred ECCEEEEEecCCcEEEEEEcCC
Q 018005 205 YKGSLYFTTPEPFSIVRFDLEN 226 (362)
Q Consensus 205 ~~G~ly~~~~~~~~i~~~D~~~ 226 (362)
.++.+||.......|.++++..
T Consensus 19 ~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 19 IEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred cCCEEEEEeCCCCEEEEEeCCC
Confidence 3689999987777788887754
No 173
>PLN00181 protein SPA1-RELATED; Provisional
Probab=25.51 E-value=7.7e+02 Score=25.52 Aligned_cols=97 Identities=8% Similarity=-0.054 Sum_probs=47.2
Q ss_pred cCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCcccccc
Q 018005 117 LPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQ 196 (362)
Q Consensus 117 ~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~ 196 (362)
+..++.+.+||..+++....-. ........+.+.+... .+++.++ ....+.+||..++.- .. .+. .
T Consensus 551 ~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~--~~L~Sgs--~Dg~v~iWd~~~~~~--~~--~~~-----~ 616 (793)
T PLN00181 551 SNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADP--TLLASGS--DDGSVKLWSINQGVS--IG--TIK-----T 616 (793)
T ss_pred EeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCC--CEEEEEc--CCCEEEEEECCCCcE--EE--EEe-----c
Confidence 3346788999988776432111 1111122333332111 2344333 345788999875421 11 000 0
Q ss_pred CCCcccEEE---CCEEEEEecCCcEEEEEEcCCC
Q 018005 197 SSHQEGVFY---KGSLYFTTPEPFSIVRFDLENG 227 (362)
Q Consensus 197 ~~~~~~v~~---~G~ly~~~~~~~~i~~~D~~~~ 227 (362)
......+.. +|...+.+.....|..||+.+.
T Consensus 617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 001112222 4666666666668999998764
No 174
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=24.64 E-value=3.1e+02 Score=20.62 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=40.8
Q ss_pred CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC------cEEEEE-EcCCCeeecC
Q 018005 168 PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FSIVRF-DLENGIWETP 232 (362)
Q Consensus 168 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~------~~i~~~-D~~~~~w~~~ 232 (362)
...+-.||.++.+|+..+ .|...........-+.++|+|-.+.... ..|.+. |.++++|+..
T Consensus 19 ~~~IvsFDv~~E~f~~i~---~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~ 87 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIK---LPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKK 87 (129)
T ss_pred CcEEEEEEcCCceEEEEE---eeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEE
Confidence 457788999999999886 4411122234456678899998875422 244555 5667899864
No 175
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=24.45 E-value=49 Score=24.45 Aligned_cols=19 Identities=42% Similarity=0.837 Sum_probs=16.6
Q ss_pred CChhhhcCCCHHHHHHHHc
Q 018005 8 MDPAIWSRLPEDLLDHVLS 26 (362)
Q Consensus 8 ~~~~~~~~LP~dll~~IL~ 26 (362)
+||.....||+||-.+|+.
T Consensus 1 iDp~fLaaLPeDiR~Evl~ 19 (108)
T PF14377_consen 1 IDPEFLAALPEDIREEVLA 19 (108)
T ss_pred CCHHHHHHCCHHHHHHHHH
Confidence 5788889999999999976
No 176
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.42 E-value=6.1e+02 Score=24.01 Aligned_cols=74 Identities=12% Similarity=0.173 Sum_probs=42.1
Q ss_pred EEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCC--ccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccc
Q 018005 105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPF--DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS 182 (362)
Q Consensus 105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~--~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~ 182 (362)
+--+-||.-++....++.+.+||...-+ -++..+.+. ....+.++. ++.|-+ +++ ....+++|...+..|+
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~-SGt~L~--~~g--~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQ-SGTYLG--IAG--SDLQVYICKKKTKSWT 467 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhc--ccceeeccccccceeEEEcC-CCCeEE--eec--ceeEEEEEecccccce
Confidence 4556788544443345669999986655 222222221 222334443 333333 333 3458889999999999
Q ss_pred ccc
Q 018005 183 KFD 185 (362)
Q Consensus 183 ~~~ 185 (362)
...
T Consensus 468 ~~~ 470 (506)
T KOG0289|consen 468 EIK 470 (506)
T ss_pred eee
Confidence 887
No 177
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=24.24 E-value=5.7e+02 Score=23.60 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=0.0
Q ss_pred eEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcc
Q 018005 122 SFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQE 201 (362)
Q Consensus 122 ~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~ 201 (362)
.+++.|...+.-+.+...........+.-+.. +++..........+++|+..++.-+... .........
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~----~la~~~~~~~~~~i~v~d~~~g~~~~~~-------~~~~~~~~~ 239 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQ----KLAYVSFESGKPEIYVQDLATGQREKVA-------SFPGMNGAP 239 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCC----EEEEEEcCCCCcEEEEEECCCCCEEEee-------cCCCCccce
Q ss_pred cEEECCE-EEEEecCCcE--EEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEE
Q 018005 202 GVFYKGS-LYFTTPEPFS--IVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMK 278 (362)
Q Consensus 202 ~v~~~G~-ly~~~~~~~~--i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~ 278 (362)
...-+|+ +++....... |..+|+.++....+. .........-.. -+|+..++.. .......
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~---------~~~~~~~~~~~s---~dg~~l~~~s----~~~g~~~ 303 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT---------NGPGIDTEPSWS---PDGKSIAFTS----DRGGSPQ 303 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEEECC---------CCCCCCCCEEEC---CCCCEEEEEE----CCCCCce
Q ss_pred EEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCC---eEEEEECCCCceEEcC
Q 018005 279 LWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP---EILYYNVARRTWHWLP 346 (362)
Q Consensus 279 vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~v~~yd~~~~~w~~~~ 346 (362)
||.++..+. ++++..- ........+..++..++...... .+..||+.++.++.+.
T Consensus 304 iy~~d~~~~~~~~l~~~-------------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 304 IYMMDADGGEVRRLTFR-------------GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EEEEECCCCCEEEeecC-------------CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
No 178
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=23.46 E-value=6.9e+02 Score=24.25 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=33.8
Q ss_pred CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeec
Q 018005 168 PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWET 231 (362)
Q Consensus 168 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~ 231 (362)
..++-++|...-+=+... +++.... ....-.+.-+-++.+-.-....|.++|+.++.--.
T Consensus 486 astlsiWDLAapTprika--eltssap--aCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKA--ELTSSAP--ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred cceeeeeeccCCCcchhh--hcCCcch--hhhhhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence 357888998876665555 4443111 12222334455555554333468999999875543
No 179
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=23.22 E-value=5.6e+02 Score=23.11 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=44.9
Q ss_pred ccEEE-CCEEEEEec--C----CcEEEEE-EcCCCeeecCCCCCcccccCCC-CcccccceeecccC-CCeEEEEEEeec
Q 018005 201 EGVFY-KGSLYFTTP--E----PFSIVRF-DLENGIWETPNDANDHMTMMLP-HELTFFRLVNDGEE-SNKLYLIGGVGR 270 (362)
Q Consensus 201 ~~v~~-~G~ly~~~~--~----~~~i~~~-D~~~~~w~~~~~p~~~~~~~~p-~~~~~~~lv~~~~~-~G~L~vv~~~~~ 270 (362)
.++.+ +|.+.+... . ....+.| |-..++|+....+ .+ .......++ | . +|+|+++.....
T Consensus 150 ~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~-------~~~~~~~e~~i~-e--l~dG~l~~~~R~~~ 219 (351)
T cd00260 150 SGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGV-------NDAGGCSECSVV-E--LSDGKLYMYTRDNS 219 (351)
T ss_pred CeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCC-------CCCCCCcCCEEE-E--ecCCEEEEEEeeCC
Confidence 35556 488776532 1 1122333 3345789864322 22 222234566 4 6 899998876431
Q ss_pred CCccceEEEEEECCCCC-EEEEeccc
Q 018005 271 NGISTTMKLWELGCGGN-WIEVERVP 295 (362)
Q Consensus 271 ~~~~~~i~vw~l~~~~~-W~~v~~~p 295 (362)
.....++.-++.+. |++.....
T Consensus 220 ---~~~~~~~~S~D~G~tWs~~~~~~ 242 (351)
T cd00260 220 ---GGRRPVYESRDMGTTWTEALGTL 242 (351)
T ss_pred ---CCcEEEEEEcCCCcCcccCcCCc
Confidence 34556666665554 99876543
No 180
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=23.20 E-value=2.7e+02 Score=25.21 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=39.3
Q ss_pred CcccEEECCEEEEEecCCcEEEEEEcCCCeeecC-CCCCcccccCCCCcccccceeecccCCCeEEEEEEe
Q 018005 199 HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP-NDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGV 268 (362)
Q Consensus 199 ~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~-~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~ 268 (362)
.+.+=.++|++|++......+..+|+++++++.+ .+|+ .|+ .|- ..|.+.+++..
T Consensus 205 PhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG------~~r-----GL~----f~G~llvVgmS 260 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG------FTR-----GLA----FAGDFAFVGLS 260 (335)
T ss_pred CcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCC------CCc-----ccc----eeCCEEEEEec
Confidence 4566788999999987777899999998888875 2332 233 243 44888888764
No 181
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=22.31 E-value=74 Score=23.48 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=18.6
Q ss_pred CCCCChhhhcCCCHHHHHHHHcc
Q 018005 5 RREMDPAIWSRLPEDLLDHVLSF 27 (362)
Q Consensus 5 ~~~~~~~~~~~LP~dll~~IL~r 27 (362)
++..+++-...||+||-.+||.-
T Consensus 42 ~~~I~pefL~ALP~diR~EVl~q 64 (108)
T PF14377_consen 42 PSQIDPEFLAALPPDIREEVLAQ 64 (108)
T ss_pred ccccCHHHHHhCCHHHHHHHHHH
Confidence 34567888899999999999863
No 182
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=22.23 E-value=5.6e+02 Score=22.74 Aligned_cols=138 Identities=16% Similarity=0.099 Sum_probs=77.2
Q ss_pred CCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCC
Q 018005 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH 199 (362)
Q Consensus 120 ~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~ 199 (362)
++.+-+||-++..-..+..-...--..++.|.++.....|+..+ ....+.++|+.+.+=+..- +. ......
T Consensus 126 DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s---~DktvKvWnl~~~~l~~~~----~g--h~~~v~ 196 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS---WDKTVKVWNLRNCQLRTTF----IG--HSGYVN 196 (315)
T ss_pred cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc---CCceEEEEccCCcchhhcc----cc--ccccEE
Confidence 35788899988887766543211122355666655444444333 3468889998776443321 11 001112
Q ss_pred cccEEECCEEEEEecCCcEEEEEEcCCCee-ecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEE
Q 018005 200 QEGVFYKGSLYFTTPEPFSIVRFDLENGIW-ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMK 278 (362)
Q Consensus 200 ~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w-~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~ 278 (362)
.-.|.-+|.+..-+++...++-.|+...+= .. +.....-..++. .-+++.++.+. ...|.
T Consensus 197 t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys-----------l~a~~~v~sl~f---spnrywL~~at-----~~sIk 257 (315)
T KOG0279|consen 197 TVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS-----------LEAFDIVNSLCF---SPNRYWLCAAT-----ATSIK 257 (315)
T ss_pred EEEECCCCCEEecCCCCceEEEEEccCCceeEe-----------ccCCCeEeeEEe---cCCceeEeecc-----CCceE
Confidence 223444898887787776778888864322 21 222222234543 56676666653 36699
Q ss_pred EEEECCC
Q 018005 279 LWELGCG 285 (362)
Q Consensus 279 vw~l~~~ 285 (362)
||+++..
T Consensus 258 Iwdl~~~ 264 (315)
T KOG0279|consen 258 IWDLESK 264 (315)
T ss_pred EEeccch
Confidence 9999643
No 183
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=21.47 E-value=7.9e+02 Score=24.20 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=56.0
Q ss_pred cEEECC-EEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEE
Q 018005 202 GVFYKG-SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLW 280 (362)
Q Consensus 202 ~v~~~G-~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw 280 (362)
++++++ ..+.-+....+|.+.|+.+.. ..+.... .+.... ..+. +.+++++-+. ...+|.+|
T Consensus 376 sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-~c~~tl~------~h~~~v-~~l~----~~~~~Lvs~~-----aD~~Ik~W 438 (537)
T KOG0274|consen 376 SLIVDSENRLLSGSLDTTIKVWDLRTKR-KCIHTLQ------GHTSLV-SSLL----LRDNFLVSSS-----ADGTIKLW 438 (537)
T ss_pred EEEecCcceEEeeeeccceEeecCCchh-hhhhhhc------CCcccc-cccc----cccceeEecc-----ccccEEEe
Confidence 345566 444444444578888888764 1111110 111111 2232 5677666654 23689999
Q ss_pred EECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 018005 281 ELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTW 342 (362)
Q Consensus 281 ~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w 342 (362)
+.++.+.=..+..- +...+.+++.++..++.....+.+..||+++.+-
T Consensus 439 D~~~~~~~~~~~~~--------------~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 439 DAEEGECLRTLEGR--------------HVGGVSALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ecccCceeeeeccC--------------CcccEEEeecCcceEEEEecCCeeEEEecccCch
Confidence 77543322211110 1122344444444555555677888889987643
No 184
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=21.19 E-value=3.7e+02 Score=24.08 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=36.4
Q ss_pred CCCeEEEEEEeecCCccceEEEEEECCC-CC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEE
Q 018005 258 ESNKLYLIGGVGRNGISTTMKLWELGCG-GN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYY 335 (362)
Q Consensus 258 ~~G~L~vv~~~~~~~~~~~i~vw~l~~~-~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~y 335 (362)
-+|.+++-+|. ...|-+|....+ ++ |+...-- ++...+..-.+++. ++..+....+..|
T Consensus 57 P~gs~~aSgG~-----Dr~I~LWnv~gdceN~~~lkgHs-------------gAVM~l~~~~d~s~-i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 57 PDGSCFASGGS-----DRAIVLWNVYGDCENFWVLKGHS-------------GAVMELHGMRDGSH-ILSCGTDKTVRGW 117 (338)
T ss_pred CCCCeEeecCC-----cceEEEEeccccccceeeecccc-------------ceeEeeeeccCCCE-EEEecCCceEEEE
Confidence 46666666663 377899985444 34 8743100 01111111123444 4444456789999
Q ss_pred ECCCCceE
Q 018005 336 NVARRTWH 343 (362)
Q Consensus 336 d~~~~~w~ 343 (362)
|.++++-.
T Consensus 118 D~~tG~~~ 125 (338)
T KOG0265|consen 118 DAETGKRI 125 (338)
T ss_pred ecccceee
Confidence 99987543
No 185
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=20.88 E-value=87 Score=23.10 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=29.5
Q ss_pred hcCCCHHHHHHHHccCChhhhhhhhccch--------hhhhhcc
Q 018005 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCK--------HFNSLLF 48 (362)
Q Consensus 13 ~~~LP~dll~~IL~rLp~~~l~~~r~VcK--------~W~~~i~ 48 (362)
+.++|.+++.-||.++.+..|.++-.-|. -|+.++.
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~~~tdeLW~~~i~ 47 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIEDTDELWKKLIK 47 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcchhhHHHHHHHHH
Confidence 57899999999999999999988877665 3666654
No 186
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=20.68 E-value=71 Score=27.88 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=25.7
Q ss_pred hhhhcCCCHHHHHHHHccCC-hhhhhhhhccchh
Q 018005 10 PAIWSRLPEDLLDHVLSFLP-PKMLLKLRSTCKH 42 (362)
Q Consensus 10 ~~~~~~LP~dll~~IL~rLp-~~~l~~~r~VcK~ 42 (362)
.....+||.+++.+||.||| -.||..+..|-..
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~et 232 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWET 232 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHH
Confidence 34568999999999999998 5778766665443
No 187
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=20.58 E-value=89 Score=21.25 Aligned_cols=18 Identities=11% Similarity=-0.011 Sum_probs=14.4
Q ss_pred EEEeCCcCceeeccCCCC
Q 018005 124 LVCNLVTLSSRTIDFPTY 141 (362)
Q Consensus 124 ~v~NP~t~~w~~lP~~~~ 141 (362)
.+|||.||+.++++.+.+
T Consensus 32 ~lfDPETGqYVeV~iP~s 49 (75)
T PF15232_consen 32 TLFDPETGQYVEVLIPSS 49 (75)
T ss_pred eeecCCCCcEEEEeCCCc
Confidence 467999999999876654
No 188
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=20.08 E-value=6.4e+02 Score=22.61 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=44.1
Q ss_pred CCeEEEEeCCCCcccccccCCCCccccccCCCcccE-EE--C-CEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCC
Q 018005 168 PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGV-FY--K-GSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMML 243 (362)
Q Consensus 168 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v-~~--~-G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~ 243 (362)
...+.+||..+++=...- .... +..+.+ +. . -.+|--+...++|--.++.+++.-..- ++ .
T Consensus 35 dDsl~LYd~~~g~~~~ti--~skk------yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF-~G------H 99 (311)
T KOG1446|consen 35 DDSLRLYDSLSGKQVKTI--NSKK------YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF-PG------H 99 (311)
T ss_pred CCeEEEEEcCCCceeeEe--eccc------ccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc-CC------C
Confidence 348899999887653322 1111 211111 11 1 233322223356777777777665542 11 1
Q ss_pred CCcccccceeecccCCCeEEEEEEeecCCccceEEEEEEC
Q 018005 244 PHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG 283 (362)
Q Consensus 244 p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~ 283 (362)
...-..|-+. -.+.-++-+. ...++..|++.
T Consensus 100 --~~~V~sL~~s--P~~d~FlS~S-----~D~tvrLWDlR 130 (311)
T KOG1446|consen 100 --KKRVNSLSVS--PKDDTFLSSS-----LDKTVRLWDLR 130 (311)
T ss_pred --CceEEEEEec--CCCCeEEecc-----cCCeEEeeEec
Confidence 1111122211 3455666655 34789999995
Done!