Query 018006
Match_columns 362
No_of_seqs 236 out of 940
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:19:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 1.2E-31 2.5E-36 259.5 8.1 157 1-157 43-208 (304)
2 PF00447 HSF_DNA-bind: HSF-typ 99.8 1.9E-22 4.1E-27 167.3 1.7 64 1-64 30-102 (103)
3 smart00415 HSF heat shock fact 99.8 6E-22 1.3E-26 165.6 2.3 62 1-62 33-105 (105)
4 COG5169 HSF1 Heat shock transc 99.8 4E-21 8.7E-26 185.7 0.2 65 1-65 41-115 (282)
5 COG3074 Uncharacterized protei 89.9 1.8 3.9E-05 34.7 7.1 53 88-143 23-75 (79)
6 PF12325 TMF_TATA_bd: TATA ele 87.8 3.6 7.9E-05 35.8 8.3 60 83-142 30-92 (120)
7 PF11932 DUF3450: Protein of u 86.0 4.4 9.5E-05 38.7 8.7 62 85-146 51-112 (251)
8 PF10473 CENP-F_leu_zip: Leuci 84.5 7 0.00015 35.0 8.6 59 86-144 55-113 (140)
9 PRK15422 septal ring assembly 83.2 7.3 0.00016 31.8 7.4 51 88-138 23-73 (79)
10 PF10168 Nup88: Nuclear pore c 82.8 5.3 0.00012 44.3 8.7 61 87-147 562-622 (717)
11 PF02183 HALZ: Homeobox associ 82.6 5.4 0.00012 29.1 5.9 41 88-128 3-43 (45)
12 PF10779 XhlA: Haemolysin XhlA 81.9 15 0.00033 28.6 8.8 58 87-144 3-60 (71)
13 PF06005 DUF904: Protein of un 80.9 17 0.00037 29.0 8.7 35 90-124 11-45 (72)
14 PF06005 DUF904: Protein of un 80.6 24 0.00051 28.2 9.4 54 88-141 16-69 (72)
15 PF04340 DUF484: Protein of un 79.6 9.3 0.0002 35.8 8.1 18 44-61 17-34 (225)
16 TIGR02894 DNA_bind_RsfA transc 76.1 18 0.00039 33.3 8.5 53 92-144 99-151 (161)
17 PF03310 Cauli_DNA-bind: Cauli 73.6 8.6 0.00019 33.8 5.5 46 102-147 4-49 (121)
18 PF04728 LPP: Lipoprotein leuc 73.1 40 0.00087 25.9 8.7 49 90-138 3-51 (56)
19 PF08826 DMPK_coil: DMPK coile 71.9 22 0.00047 27.6 6.8 44 86-129 14-57 (61)
20 PF06156 DUF972: Protein of un 71.9 16 0.00035 31.2 6.7 45 88-132 13-57 (107)
21 PF10224 DUF2205: Predicted co 71.7 54 0.0012 26.8 9.4 48 99-146 18-65 (80)
22 PF04111 APG6: Autophagy prote 71.0 27 0.00057 34.9 9.1 48 85-132 45-92 (314)
23 KOG4460 Nuclear pore complex, 67.2 29 0.00062 37.8 8.8 59 91-149 589-647 (741)
24 PRK13169 DNA replication intia 65.4 26 0.00055 30.2 6.7 44 87-130 12-55 (110)
25 PF12329 TMF_DNA_bd: TATA elem 65.0 50 0.0011 26.2 7.9 56 87-142 16-71 (74)
26 PF08614 ATG16: Autophagy prot 64.7 50 0.0011 30.4 9.0 52 91-142 131-182 (194)
27 PF11559 ADIP: Afadin- and alp 64.0 50 0.0011 29.0 8.5 49 87-135 56-104 (151)
28 TIGR02449 conserved hypothetic 63.4 26 0.00057 27.6 5.8 43 92-141 16-58 (65)
29 PRK00888 ftsB cell division pr 63.4 19 0.00041 30.5 5.4 36 91-126 28-63 (105)
30 PF11932 DUF3450: Protein of u 62.6 46 0.001 31.7 8.7 59 88-146 47-105 (251)
31 PRK00736 hypothetical protein; 61.8 38 0.00082 26.5 6.5 42 88-129 10-51 (68)
32 PF08581 Tup_N: Tup N-terminal 61.8 69 0.0015 26.0 8.2 47 92-138 6-59 (79)
33 PRK00295 hypothetical protein; 61.5 43 0.00093 26.2 6.8 40 90-129 12-51 (68)
34 PRK15422 septal ring assembly 60.2 95 0.0021 25.5 8.9 46 88-133 9-61 (79)
35 PRK09039 hypothetical protein; 59.5 62 0.0013 32.7 9.3 29 91-119 124-152 (343)
36 PF08317 Spc7: Spc7 kinetochor 59.3 60 0.0013 32.3 9.1 52 91-142 210-261 (325)
37 PF04880 NUDE_C: NUDE protein, 59.1 5.3 0.00011 36.8 1.5 32 97-129 24-55 (166)
38 PF04102 SlyX: SlyX; InterPro 58.9 34 0.00073 26.7 5.8 42 89-130 10-51 (69)
39 PF05377 FlaC_arch: Flagella a 58.3 39 0.00085 25.9 5.8 44 94-144 4-47 (55)
40 COG3074 Uncharacterized protei 57.6 75 0.0016 25.7 7.5 50 88-137 9-58 (79)
41 PF10473 CENP-F_leu_zip: Leuci 57.1 87 0.0019 28.1 8.8 54 85-138 68-121 (140)
42 PF07106 TBPIP: Tat binding pr 56.6 65 0.0014 28.8 8.1 61 83-143 72-134 (169)
43 PRK15396 murein lipoprotein; P 56.6 92 0.002 25.3 8.1 50 90-139 25-74 (78)
44 PRK04325 hypothetical protein; 56.3 50 0.0011 26.3 6.5 31 97-127 23-53 (74)
45 PRK04406 hypothetical protein; 56.2 49 0.0011 26.5 6.4 30 98-127 26-55 (75)
46 PRK11637 AmiB activator; Provi 55.8 63 0.0014 33.2 8.8 53 91-143 83-135 (428)
47 PF02403 Seryl_tRNA_N: Seryl-t 55.8 59 0.0013 26.8 7.1 63 83-145 36-101 (108)
48 PRK02793 phi X174 lysis protei 54.6 56 0.0012 25.9 6.4 31 97-127 22-52 (72)
49 PRK00846 hypothetical protein; 54.2 59 0.0013 26.4 6.6 43 88-130 11-60 (77)
50 TIGR02132 phaR_Bmeg polyhydrox 54.1 59 0.0013 30.6 7.4 56 88-143 84-139 (189)
51 PRK10803 tol-pal system protei 54.1 83 0.0018 30.5 8.9 46 100-145 57-102 (263)
52 PF05377 FlaC_arch: Flagella a 53.8 99 0.0021 23.7 7.5 33 88-120 5-37 (55)
53 TIGR03752 conj_TIGR03752 integ 53.5 61 0.0013 34.5 8.3 37 86-122 69-105 (472)
54 PRK02119 hypothetical protein; 53.4 59 0.0013 25.8 6.4 29 99-127 25-53 (73)
55 COG1579 Zn-ribbon protein, pos 53.3 48 0.001 32.2 7.0 53 82-134 88-140 (239)
56 KOG4196 bZIP transcription fac 52.9 47 0.001 29.7 6.3 30 95-124 79-108 (135)
57 PF11414 Suppressor_APC: Adeno 52.5 45 0.00098 27.4 5.7 41 88-128 5-45 (84)
58 PF04156 IncA: IncA protein; 52.3 1.1E+02 0.0024 27.5 8.9 60 86-145 91-150 (191)
59 PRK10963 hypothetical protein; 52.1 66 0.0014 30.4 7.7 18 44-61 14-31 (223)
60 smart00338 BRLZ basic region l 51.9 34 0.00074 25.9 4.7 25 88-112 31-55 (65)
61 PRK11637 AmiB activator; Provi 51.4 85 0.0018 32.2 9.0 44 89-132 74-117 (428)
62 PF07106 TBPIP: Tat binding pr 49.3 64 0.0014 28.9 6.8 28 84-111 80-107 (169)
63 COG4942 Membrane-bound metallo 49.2 88 0.0019 32.9 8.6 62 85-146 61-125 (420)
64 PF04102 SlyX: SlyX; InterPro 48.9 1E+02 0.0022 24.0 7.0 43 89-131 3-45 (69)
65 PF10224 DUF2205: Predicted co 48.7 77 0.0017 25.9 6.5 44 84-127 17-60 (80)
66 PF13874 Nup54: Nucleoporin co 48.4 1.1E+02 0.0025 26.8 8.1 49 90-138 44-92 (141)
67 PF10211 Ax_dynein_light: Axon 47.8 1E+02 0.0022 28.7 8.0 28 88-115 125-152 (189)
68 TIGR00414 serS seryl-tRNA synt 47.0 86 0.0019 32.5 8.2 74 82-155 36-114 (418)
69 PF00038 Filament: Intermediat 46.9 1.4E+02 0.003 28.9 9.2 42 88-129 214-255 (312)
70 smart00787 Spc7 Spc7 kinetocho 46.7 1.3E+02 0.0028 30.3 9.1 53 91-143 205-257 (312)
71 PF09726 Macoilin: Transmembra 46.7 77 0.0017 35.3 8.2 11 88-98 423-433 (697)
72 COG1345 FliD Flagellar capping 46.6 87 0.0019 33.4 8.3 57 85-144 424-480 (483)
73 PF11559 ADIP: Afadin- and alp 46.5 1.7E+02 0.0037 25.5 9.0 41 88-128 64-104 (151)
74 COG1579 Zn-ribbon protein, pos 46.3 77 0.0017 30.9 7.2 46 88-133 36-81 (239)
75 PF04201 TPD52: Tumour protein 46.0 64 0.0014 29.7 6.3 39 89-127 28-66 (162)
76 KOG4005 Transcription factor X 45.9 92 0.002 30.7 7.6 42 87-128 94-135 (292)
77 PRK09039 hypothetical protein; 45.7 1.2E+02 0.0025 30.8 8.7 43 88-130 142-184 (343)
78 PF05278 PEARLI-4: Arabidopsis 45.2 1.3E+02 0.0029 29.8 8.8 49 88-136 198-246 (269)
79 PF00170 bZIP_1: bZIP transcri 44.8 1.2E+02 0.0026 22.8 6.8 25 101-125 30-54 (64)
80 COG5481 Uncharacterized conser 44.8 1.4E+02 0.0031 23.4 7.0 27 99-125 6-32 (67)
81 PF07200 Mod_r: Modifier of ru 44.6 1.2E+02 0.0025 26.5 7.6 53 86-138 37-89 (150)
82 PRK06798 fliD flagellar cappin 44.0 84 0.0018 32.9 7.6 54 86-142 382-435 (440)
83 PF10805 DUF2730: Protein of u 43.8 1.1E+02 0.0024 25.8 7.0 29 105-133 66-94 (106)
84 PRK13182 racA polar chromosome 43.5 74 0.0016 29.4 6.4 17 48-64 38-54 (175)
85 PF14282 FlxA: FlxA-like prote 43.2 1.7E+02 0.0037 24.6 8.1 50 89-138 18-71 (106)
86 PF07407 Seadorna_VP6: Seadorn 43.2 90 0.0019 32.1 7.3 29 84-112 33-61 (420)
87 TIGR02449 conserved hypothetic 43.1 1.6E+02 0.0036 23.2 8.8 46 87-132 18-63 (65)
88 PF09744 Jnk-SapK_ap_N: JNK_SA 43.0 88 0.0019 28.5 6.7 20 126-145 132-151 (158)
89 PRK13729 conjugal transfer pil 42.1 1.4E+02 0.003 32.0 8.8 46 97-142 76-121 (475)
90 PF04420 CHD5: CHD5-like prote 41.4 1.3E+02 0.0028 27.1 7.6 61 86-146 43-108 (161)
91 PF04977 DivIC: Septum formati 41.2 83 0.0018 24.0 5.5 32 92-123 19-50 (80)
92 PF12709 Kinetocho_Slk19: Cent 41.1 2.1E+02 0.0046 23.8 8.3 51 90-140 34-85 (87)
93 PRK13729 conjugal transfer pil 40.9 58 0.0013 34.7 5.9 44 91-134 77-120 (475)
94 PRK05431 seryl-tRNA synthetase 40.6 96 0.0021 32.2 7.4 74 82-155 34-111 (425)
95 PRK14127 cell division protein 40.5 83 0.0018 27.1 5.8 37 92-128 32-68 (109)
96 PLN02678 seryl-tRNA synthetase 40.2 1.2E+02 0.0025 32.1 8.0 74 82-155 39-116 (448)
97 PRK04325 hypothetical protein; 40.2 1.9E+02 0.0041 23.0 7.7 39 88-126 7-45 (74)
98 PF13747 DUF4164: Domain of un 40.0 1.7E+02 0.0038 24.0 7.4 44 101-144 36-79 (89)
99 COG1382 GimC Prefoldin, chaper 39.8 1E+02 0.0023 27.0 6.4 35 90-124 70-104 (119)
100 PF04156 IncA: IncA protein; 39.7 2.2E+02 0.0047 25.6 8.8 20 91-110 131-150 (191)
101 smart00338 BRLZ basic region l 39.7 1.3E+02 0.0029 22.6 6.3 25 92-116 28-52 (65)
102 PRK02119 hypothetical protein; 39.0 2E+02 0.0043 22.9 7.6 13 88-100 7-19 (73)
103 PF06156 DUF972: Protein of un 38.5 1.9E+02 0.0042 24.7 7.7 36 88-123 6-41 (107)
104 PF10805 DUF2730: Protein of u 38.4 1.6E+02 0.0035 24.7 7.2 51 90-140 42-94 (106)
105 PF14282 FlxA: FlxA-like prote 37.9 1.5E+02 0.0033 24.9 7.0 56 82-137 18-77 (106)
106 KOG0977 Nuclear envelope prote 37.7 1.3E+02 0.0028 32.8 7.9 48 87-134 166-220 (546)
107 PHA01750 hypothetical protein 35.9 1.1E+02 0.0024 24.5 5.3 31 96-126 41-71 (75)
108 TIGR02894 DNA_bind_RsfA transc 35.8 1.4E+02 0.0031 27.5 6.8 35 102-136 102-136 (161)
109 PRK00295 hypothetical protein; 35.8 2.1E+02 0.0046 22.3 8.0 40 88-127 3-42 (68)
110 COG1730 GIM5 Predicted prefold 35.3 2.1E+02 0.0046 25.8 7.8 48 87-134 91-138 (145)
111 PRK04406 hypothetical protein; 35.3 2.3E+02 0.0051 22.6 7.8 14 88-101 9-22 (75)
112 cd00632 Prefoldin_beta Prefold 35.1 1.5E+02 0.0033 24.5 6.5 43 88-130 61-103 (105)
113 PF13094 CENP-Q: CENP-Q, a CEN 34.4 2.3E+02 0.0051 25.0 8.0 58 88-145 32-89 (160)
114 PF10186 Atg14: UV radiation r 33.9 2.6E+02 0.0057 26.4 8.7 18 207-224 195-212 (302)
115 PF10146 zf-C4H2: Zinc finger- 33.9 2.7E+02 0.0059 26.9 8.8 52 87-138 36-87 (230)
116 PF04728 LPP: Lipoprotein leuc 33.7 2.2E+02 0.0048 21.9 7.0 43 88-130 8-50 (56)
117 PF08317 Spc7: Spc7 kinetochor 33.5 2.6E+02 0.0056 27.9 8.9 13 207-219 279-291 (325)
118 PRK06800 fliH flagellar assemb 33.3 2.2E+02 0.0048 27.2 7.8 33 87-119 35-67 (228)
119 PF10458 Val_tRNA-synt_C: Valy 33.2 2.2E+02 0.0048 21.7 7.5 25 88-112 2-26 (66)
120 PF10267 Tmemb_cc2: Predicted 33.2 1.6E+02 0.0035 30.7 7.6 13 115-127 280-292 (395)
121 COG3159 Uncharacterized protei 32.9 1.1E+02 0.0023 29.6 5.7 23 41-63 12-34 (218)
122 PF02994 Transposase_22: L1 tr 32.8 68 0.0015 32.8 4.8 57 87-143 109-169 (370)
123 PF07889 DUF1664: Protein of u 32.6 3.4E+02 0.0073 24.0 8.5 59 84-145 37-95 (126)
124 KOG0804 Cytoplasmic Zn-finger 32.4 1.9E+02 0.0041 30.9 7.9 54 88-141 344-398 (493)
125 PF08781 DP: Transcription fac 32.3 2.6E+02 0.0056 25.3 7.8 34 91-124 2-35 (142)
126 PRK06664 fliD flagellar hook-a 32.3 1.9E+02 0.0041 32.2 8.3 54 87-143 604-657 (661)
127 PF07407 Seadorna_VP6: Seadorn 32.0 2.2E+02 0.0047 29.4 8.0 55 89-143 31-87 (420)
128 PF02183 HALZ: Homeobox associ 31.7 2E+02 0.0044 20.9 6.0 21 92-112 14-34 (45)
129 PF09755 DUF2046: Uncharacteri 31.7 4.6E+02 0.01 26.6 10.2 44 83-126 20-63 (310)
130 PF10018 Med4: Vitamin-D-recep 31.4 3.3E+02 0.0071 25.0 8.7 47 99-146 11-57 (188)
131 PF13747 DUF4164: Domain of un 31.4 3E+02 0.0064 22.7 8.1 47 86-132 35-81 (89)
132 PRK13923 putative spore coat p 31.4 3.4E+02 0.0073 25.3 8.6 41 103-143 110-150 (170)
133 KOG4010 Coiled-coil protein TP 31.3 1.5E+02 0.0032 28.3 6.2 38 90-127 44-81 (208)
134 PF12718 Tropomyosin_1: Tropom 31.1 1.8E+02 0.0039 25.8 6.6 40 89-128 20-59 (143)
135 PRK13169 DNA replication intia 30.9 3.1E+02 0.0067 23.7 7.7 28 89-116 7-34 (110)
136 PRK00736 hypothetical protein; 30.6 2.6E+02 0.0057 21.8 7.9 40 88-127 3-42 (68)
137 COG3883 Uncharacterized protei 30.5 2.7E+02 0.006 27.6 8.3 63 87-149 49-114 (265)
138 PF08614 ATG16: Autophagy prot 30.4 2.9E+02 0.0064 25.3 8.2 16 92-107 118-133 (194)
139 COG5613 Uncharacterized conser 30.4 1.9E+02 0.0042 30.0 7.4 46 102-147 335-380 (400)
140 PRK14157 heat shock protein Gr 30.4 2.9E+02 0.0063 26.8 8.3 40 87-126 81-120 (227)
141 PF13874 Nup54: Nucleoporin co 30.3 2.9E+02 0.0064 24.2 7.8 60 87-146 34-93 (141)
142 PRK08032 fliD flagellar cappin 30.2 2E+02 0.0044 30.2 7.9 46 87-135 410-455 (462)
143 PLN02320 seryl-tRNA synthetase 29.7 2E+02 0.0044 30.9 7.8 104 45-155 68-175 (502)
144 KOG4360 Uncharacterized coiled 29.7 2.5E+02 0.0054 30.6 8.3 56 89-144 225-280 (596)
145 PF12308 Noelin-1: Neurogenesi 29.4 1.8E+02 0.0038 24.9 5.9 52 87-138 44-95 (101)
146 PF15188 CCDC-167: Coiled-coil 29.3 62 0.0014 26.8 3.1 28 84-111 37-64 (85)
147 PRK02793 phi X174 lysis protei 29.1 2.9E+02 0.0063 21.8 7.8 16 88-103 6-21 (72)
148 PRK05892 nucleoside diphosphat 29.0 1.8E+02 0.004 26.2 6.4 66 78-143 6-72 (158)
149 PF14584 DUF4446: Protein of u 28.8 1.7E+02 0.0036 26.5 6.1 61 91-151 24-86 (151)
150 PF12325 TMF_TATA_bd: TATA ele 28.6 4E+02 0.0086 23.2 9.0 44 87-130 20-63 (120)
151 PF04111 APG6: Autophagy prote 28.6 3E+02 0.0064 27.6 8.4 26 87-112 61-86 (314)
152 PF05266 DUF724: Protein of un 28.4 2.8E+02 0.0062 25.9 7.7 14 89-102 130-143 (190)
153 PF07334 IFP_35_N: Interferon- 28.4 97 0.0021 25.2 4.0 16 94-109 4-19 (76)
154 PF11853 DUF3373: Protein of u 28.4 56 0.0012 35.0 3.4 25 89-114 24-48 (489)
155 PF12718 Tropomyosin_1: Tropom 28.3 3.9E+02 0.0085 23.7 8.3 10 209-218 120-129 (143)
156 PF03904 DUF334: Domain of unk 28.1 4.4E+02 0.0096 25.7 9.0 40 89-128 42-81 (230)
157 PF08172 CASP_C: CASP C termin 28.1 1.2E+02 0.0026 29.5 5.4 17 211-227 196-212 (248)
158 PF10146 zf-C4H2: Zinc finger- 28.0 3.2E+02 0.0069 26.4 8.2 55 91-145 33-87 (230)
159 PF02388 FemAB: FemAB family; 28.0 2.4E+02 0.0052 28.9 7.9 55 89-143 241-298 (406)
160 PF03962 Mnd1: Mnd1 family; I 27.9 3.7E+02 0.0081 24.9 8.4 26 84-109 104-129 (188)
161 COG2433 Uncharacterized conser 27.7 2.2E+02 0.0047 31.6 7.6 42 87-128 426-467 (652)
162 PRK03947 prefoldin subunit alp 27.6 2.8E+02 0.0062 23.8 7.2 45 88-132 92-136 (140)
163 PF04889 Cwf_Cwc_15: Cwf15/Cwc 27.1 3.7E+02 0.0081 26.1 8.6 72 97-180 146-217 (244)
164 PHA02675 ORF104 fusion protein 27.0 3.8E+02 0.0081 22.4 7.4 45 101-145 34-78 (90)
165 KOG0996 Structural maintenance 27.0 2.5E+02 0.0055 33.4 8.3 60 87-146 546-611 (1293)
166 PF04642 DUF601: Protein of un 26.9 1.3E+02 0.0027 30.0 5.2 52 89-141 223-282 (311)
167 PF03285 Paralemmin: Paralemmi 26.8 3.3E+02 0.0071 27.2 8.2 33 186-228 95-132 (278)
168 PHA02562 46 endonuclease subun 26.6 2.4E+02 0.0052 29.5 7.7 59 95-153 356-420 (562)
169 PRK07737 fliD flagellar cappin 26.6 2.6E+02 0.0056 29.8 8.0 52 88-142 446-497 (501)
170 PRK14154 heat shock protein Gr 26.6 3.7E+02 0.0079 25.7 8.2 36 87-122 56-91 (208)
171 PF15619 Lebercilin: Ciliary p 26.4 3.9E+02 0.0085 25.0 8.3 26 91-116 13-38 (194)
172 PF07989 Microtub_assoc: Micro 26.4 3.4E+02 0.0073 21.7 7.8 27 88-114 5-31 (75)
173 PF08172 CASP_C: CASP C termin 26.3 1.6E+02 0.0034 28.7 5.8 14 208-221 175-188 (248)
174 PF07200 Mod_r: Modifier of ru 26.2 3.7E+02 0.008 23.3 7.7 38 88-125 53-90 (150)
175 PRK14148 heat shock protein Gr 26.1 5.5E+02 0.012 24.2 9.2 41 88-128 38-78 (195)
176 COG5613 Uncharacterized conser 25.9 4E+02 0.0087 27.8 8.7 60 88-147 328-387 (400)
177 KOG0977 Nuclear envelope prote 25.7 3E+02 0.0065 30.1 8.2 42 87-128 152-193 (546)
178 COG4026 Uncharacterized protei 25.5 3.6E+02 0.0078 26.5 7.9 38 90-134 142-179 (290)
179 PRK10803 tol-pal system protei 25.4 2.9E+02 0.0064 26.8 7.6 59 88-146 38-96 (263)
180 TIGR02338 gimC_beta prefoldin, 25.2 3.1E+02 0.0067 22.9 6.8 39 89-127 66-104 (110)
181 PF06785 UPF0242: Uncharacteri 25.2 2.7E+02 0.0059 28.8 7.4 48 96-143 126-173 (401)
182 PF04912 Dynamitin: Dynamitin 25.0 2.4E+02 0.0052 28.8 7.2 48 83-130 87-144 (388)
183 TIGR00219 mreC rod shape-deter 24.9 2.1E+02 0.0046 28.1 6.6 18 92-109 68-85 (283)
184 PF14817 HAUS5: HAUS augmin-li 24.8 3.6E+02 0.0079 29.9 8.8 50 85-134 81-130 (632)
185 PF04849 HAP1_N: HAP1 N-termin 24.6 4.4E+02 0.0095 26.7 8.7 52 95-146 232-283 (306)
186 PRK14155 heat shock protein Gr 24.4 4.6E+02 0.0099 25.0 8.4 37 85-121 15-51 (208)
187 KOG1103 Predicted coiled-coil 24.4 2.4E+02 0.0052 29.5 6.8 49 88-136 243-291 (561)
188 PF01920 Prefoldin_2: Prefoldi 24.4 2.9E+02 0.0062 22.1 6.3 41 88-128 60-100 (106)
189 KOG2391 Vacuolar sorting prote 24.2 3.8E+02 0.0083 27.7 8.2 23 109-131 240-262 (365)
190 PF04899 MbeD_MobD: MbeD/MobD 24.2 3.7E+02 0.008 21.4 7.3 43 88-130 19-61 (70)
191 PF02996 Prefoldin: Prefoldin 24.1 2.7E+02 0.0059 22.9 6.2 41 88-128 75-115 (120)
192 PF06419 COG6: Conserved oligo 23.8 3.5E+02 0.0075 29.6 8.5 58 88-145 50-107 (618)
193 PF09742 Dymeclin: Dyggve-Melc 23.6 58 0.0012 35.9 2.6 19 295-313 28-49 (678)
194 PF04012 PspA_IM30: PspA/IM30 23.6 5.8E+02 0.013 23.5 9.0 40 99-138 100-139 (221)
195 PRK14144 heat shock protein Gr 23.4 5.6E+02 0.012 24.3 8.7 37 85-121 47-83 (199)
196 PRK14163 heat shock protein Gr 23.3 4.6E+02 0.0099 25.2 8.2 35 87-121 44-78 (214)
197 KOG1760 Molecular chaperone Pr 23.3 2.7E+02 0.0058 24.9 6.1 36 92-127 83-118 (131)
198 PRK14160 heat shock protein Gr 22.9 6.5E+02 0.014 24.1 9.1 19 206-224 138-156 (211)
199 PF00038 Filament: Intermediat 22.9 6.6E+02 0.014 24.2 9.5 35 98-132 217-251 (312)
200 PF10018 Med4: Vitamin-D-recep 22.8 4.6E+02 0.01 24.0 8.0 50 88-138 14-63 (188)
201 PRK14143 heat shock protein Gr 22.5 4.6E+02 0.01 25.5 8.2 29 88-116 72-100 (238)
202 PF12777 MT: Microtubule-bindi 22.4 5.7E+02 0.012 25.6 9.2 45 89-133 234-278 (344)
203 cd00890 Prefoldin Prefoldin is 22.4 3.6E+02 0.0079 22.3 6.7 41 88-128 85-125 (129)
204 PF06785 UPF0242: Uncharacteri 22.4 3.7E+02 0.0079 27.9 7.7 54 85-138 129-182 (401)
205 PF09726 Macoilin: Transmembra 22.3 3.7E+02 0.008 30.1 8.4 52 95-146 543-601 (697)
206 PRK14147 heat shock protein Gr 22.1 5.7E+02 0.012 23.5 8.4 36 87-122 22-57 (172)
207 COG1730 GIM5 Predicted prefold 22.1 2.9E+02 0.0062 25.0 6.2 43 86-128 97-139 (145)
208 PF09787 Golgin_A5: Golgin sub 22.0 3.5E+02 0.0075 28.8 7.9 39 90-128 274-312 (511)
209 PF11853 DUF3373: Protein of u 21.9 84 0.0018 33.7 3.3 16 91-106 32-47 (489)
210 COG1377 FlhB Flagellar biosynt 21.8 59 0.0013 33.5 2.1 33 295-327 205-237 (363)
211 PRK09343 prefoldin subunit bet 21.8 4E+02 0.0086 22.9 6.9 41 91-138 72-112 (121)
212 PRK08724 fliD flagellar cappin 21.6 3.5E+02 0.0075 30.3 7.9 19 88-106 622-640 (673)
213 PF13815 Dzip-like_N: Iguana/D 21.5 5.1E+02 0.011 22.0 7.6 37 97-133 73-109 (118)
214 PF04849 HAP1_N: HAP1 N-termin 21.4 4.5E+02 0.0098 26.6 8.1 59 88-146 165-245 (306)
215 PF05667 DUF812: Protein of un 21.3 4.9E+02 0.011 28.6 9.0 61 88-148 326-392 (594)
216 PF12808 Mto2_bdg: Micro-tubul 21.2 1.4E+02 0.003 22.6 3.4 25 86-110 25-49 (52)
217 PF03310 Cauli_DNA-bind: Cauli 21.2 1.6E+02 0.0035 26.0 4.3 77 87-169 10-90 (121)
218 PF13600 DUF4140: N-terminal d 20.9 2.2E+02 0.0047 23.2 4.9 29 89-117 69-97 (104)
219 PF07334 IFP_35_N: Interferon- 20.9 1.4E+02 0.0031 24.3 3.6 22 89-110 6-27 (76)
220 TIGR01843 type_I_hlyD type I s 20.8 4.9E+02 0.011 25.7 8.3 34 94-127 141-174 (423)
221 PF15456 Uds1: Up-regulated Du 20.6 4.5E+02 0.0097 23.0 7.0 43 89-146 21-63 (124)
222 PF15188 CCDC-167: Coiled-coil 20.5 5E+02 0.011 21.5 7.9 55 84-138 6-70 (85)
223 KOG4571 Activating transcripti 20.5 4E+02 0.0087 26.9 7.4 28 119-146 263-290 (294)
224 KOG3850 Predicted membrane pro 20.4 4.9E+02 0.011 27.5 8.2 13 115-127 328-340 (455)
225 PF08647 BRE1: BRE1 E3 ubiquit 20.3 3.5E+02 0.0075 22.3 6.0 53 91-143 25-80 (96)
226 PF10481 CENP-F_N: Cenp-F N-te 20.2 6.3E+02 0.014 25.5 8.6 59 86-144 70-128 (307)
227 PF15003 HAUS2: HAUS augmin-li 20.0 2.2E+02 0.0048 28.4 5.5 56 88-147 52-108 (277)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=99.97 E-value=1.2e-31 Score=259.46 Aligned_cols=157 Identities=39% Similarity=0.623 Sum_probs=137.7
Q ss_pred CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC--CCcceEeCCCcCcCCccccccccccCCCcCCCCC--CcCCC
Q 018006 1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD--PEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQ--NLHGQ 76 (362)
Q Consensus 1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~--~~~~eF~h~~F~Rg~p~LL~~IkRrk~~~s~s~q--n~~~q 76 (362)
|||+.+|++.+||+||||+||+|||||||+||||||+ +++|||+|++|+||+++||++|+||++..+.... .....
T Consensus 43 v~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~ 122 (304)
T KOG0627|consen 43 IWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSF 122 (304)
T ss_pred cCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCCcccccCcchh
Confidence 8999999999999999999999999999999999999 9999999999999999999999999998765431 11100
Q ss_pred CCCCc-----hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 018006 77 GTPLT-----ESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLE 151 (362)
Q Consensus 77 s~pl~-----e~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~pgfl 151 (362)
...+. ...+..+..++..|++++..|+.++.+|++++..+..+++.+.+++..++.+|+.++.|++++++.|+|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 202 (304)
T KOG0627|consen 123 ERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFL 202 (304)
T ss_pred hhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccCchhhHHHHHhhHHHhhccCccch
Confidence 01111 1234568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccc
Q 018006 152 SNFGAH 157 (362)
Q Consensus 152 ~~L~q~ 157 (362)
.++.+.
T Consensus 203 ~~~~~~ 208 (304)
T KOG0627|consen 203 NQAPQR 208 (304)
T ss_pred hcccch
Confidence 988754
No 2
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=99.85 E-value=1.9e-22 Score=167.27 Aligned_cols=64 Identities=56% Similarity=1.101 Sum_probs=52.7
Q ss_pred CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccCCC---------cceEeCCCcCcCCccccccccccCC
Q 018006 1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPE---------QWEFANEDFVRGQPERLKNIHRRKP 64 (362)
Q Consensus 1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~~~---------~~eF~h~~F~Rg~p~LL~~IkRrk~ 64 (362)
|+|+.+|++.|||+||+|+||+||+||||+|||+|+... .|+|+|++|+||+|+||..|+|+++
T Consensus 30 I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 30 IHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp ES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred EeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence 789999999999999999999999999999999999743 3999999999999999999999874
No 3
>smart00415 HSF heat shock factor.
Probab=99.84 E-value=6e-22 Score=165.56 Aligned_cols=62 Identities=74% Similarity=1.324 Sum_probs=59.3
Q ss_pred CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccCC-----------CcceEeCCCcCcCCcccccccccc
Q 018006 1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDP-----------EQWEFANEDFVRGQPERLKNIHRR 62 (362)
Q Consensus 1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~~-----------~~~eF~h~~F~Rg~p~LL~~IkRr 62 (362)
|+|+..|.+.|||+||+|++|+||+||||+|||+|+.. +.|+|+|++|+||+|+||.+|+||
T Consensus 33 I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 33 IWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred EcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCCCCceEEECcCccCcCHHHHHhCcCC
Confidence 68999999999999999999999999999999999975 679999999999999999999986
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.80 E-value=4e-21 Score=185.67 Aligned_cols=65 Identities=51% Similarity=0.944 Sum_probs=60.5
Q ss_pred CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC-C---------CcceEeCCCcCcCCccccccccccCCC
Q 018006 1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-P---------EQWEFANEDFVRGQPERLKNIHRRKPV 65 (362)
Q Consensus 1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~-~---------~~~eF~h~~F~Rg~p~LL~~IkRrk~~ 65 (362)
|||+++|.+.|||+||||.||+|||||||+|||+||. . ..|||.|++|++|..++|++|+|+|..
T Consensus 41 I~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~ 115 (282)
T COG5169 41 ILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAP 115 (282)
T ss_pred EeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhhcC
Confidence 7999999999999999999999999999999999997 2 249999999999999999999997754
No 5
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.88 E-value=1.8 Score=34.75 Aligned_cols=53 Identities=26% Similarity=0.454 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
+.-+|+.||..+..|..|.+.+++....+..+-..|++.... ||..|-+.|.+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~---WQerlrsLLGk 75 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG---WQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence 456899999999999999999999988888888888876544 55555544444
No 6
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.76 E-value=3.6 Score=35.82 Aligned_cols=60 Identities=22% Similarity=0.456 Sum_probs=45.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 83 SERQGLKDDIERLKKEKEILLLELQRHEQERQGF---ESQMQLLRERFQLMEQRQQKMVSFVG 142 (362)
Q Consensus 83 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l---~~qvq~L~ERL~~~E~~QqqmlsFL~ 142 (362)
.|...+..++.+|...+..+..||.++-.++..+ ..++..|+..+..++.+.+.++..|.
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677888888888888889998888777444 45577778888888888888876553
No 7
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.03 E-value=4.4 Score=38.68 Aligned_cols=62 Identities=19% Similarity=0.340 Sum_probs=43.3
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
++.+..++..|+++...|.....+++......+.++..|++++...+...+.|..+|.+++.
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666777777777777788888888888776
No 8
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.49 E-value=7 Score=35.00 Aligned_cols=59 Identities=20% Similarity=0.376 Sum_probs=48.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
..+..+|..|...+..|..||..++.++..+...++.+.+++..++..+..+...|..+
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34677788888888889999999999999999999999999988888887777766554
No 9
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=83.24 E-value=7.3 Score=31.83 Aligned_cols=51 Identities=27% Similarity=0.409 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
+.-+|+.||..+..|..|++.++..+..+..+.+.|++....-+.+-+.|+
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888888777666666666666666655443333333333
No 10
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.80 E-value=5.3 Score=44.26 Aligned_cols=61 Identities=31% Similarity=0.473 Sum_probs=53.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK 147 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~ 147 (362)
.+...+..|+..+..-..+|..++++...+......|.+|+.....+|..++.-+..+++.
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~ 622 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL 622 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888899999999999999999999999999999999999988888763
No 11
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.65 E-value=5.4 Score=29.06 Aligned_cols=41 Identities=27% Similarity=0.420 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
++.+-+.||.....|..+-.+|.++++.+..++..|.+.++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45667788888888888888888888888888888887663
No 12
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=81.93 E-value=15 Score=28.64 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=48.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
.+..++.+++.....+..++..+++.....+.++..+.++|..++..++=+..++..+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGa 60 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGA 60 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888889999999999999999999999999988887766655543
No 13
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.87 E-value=17 Score=28.95 Aligned_cols=35 Identities=11% Similarity=0.269 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ 124 (362)
.+|.++=..+..|..|+..|+.++..+..+...|+
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333333444444444444333333333333
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.56 E-value=24 Score=28.16 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV 141 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL 141 (362)
+.+.|..|+.++..|..+-..+.+++..+..+.+.|++.......+...++.-|
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555555555555566666655444444445555443
No 15
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=79.64 E-value=9.3 Score=35.79 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=0.0
Q ss_pred eCCCcCcCCccccccccc
Q 018006 44 ANEDFVRGQPERLKNIHR 61 (362)
Q Consensus 44 ~h~~F~Rg~p~LL~~IkR 61 (362)
.||.|-..+|+||..|+=
T Consensus 17 ~~PdFf~~~~~ll~~l~~ 34 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRL 34 (225)
T ss_dssp ------------------
T ss_pred hCcHHHHhCHHHHHHcCC
Confidence 799999999999999874
No 16
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.13 E-value=18 Score=33.26 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
...++.++..|..|+..|++++..++.++..|..++..++..=+.|+..+-++
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777888888888888888888888888887777777777766654
No 17
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=73.58 E-value=8.6 Score=33.76 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018006 102 LLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK 147 (362)
Q Consensus 102 L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~ 147 (362)
...||..+.+.+..+...+.+|-+++...++.+..|.++-++++++
T Consensus 4 ~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD 49 (121)
T PF03310_consen 4 IIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD 49 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 4456666666666677777777777777777778888888888775
No 18
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=73.10 E-value=40 Score=25.89 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
.+|++|..+...|...+..|..+...+...++..++.-.+..+|...+.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4677777777777777777777777777777777777766666665554
No 19
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.90 E-value=22 Score=27.65 Aligned_cols=44 Identities=16% Similarity=0.380 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 129 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~ 129 (362)
+.+..++.+.+..+..+...|+.....+..+..+|..|++++..
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666766666666666666666666543
No 20
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.88 E-value=16 Score=31.22 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 132 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~ 132 (362)
++..|..|-.+...|...|..+-+++..+..+.+.|++||...++
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555666666666667777777777777777788888888876655
No 21
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=71.69 E-value=54 Score=26.79 Aligned_cols=48 Identities=15% Similarity=0.354 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 99 KEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 99 ~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
+..|..++..|+.....+..++...++....++...+-+-.++..++.
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555443
No 22
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=70.96 E-value=27 Score=34.94 Aligned_cols=48 Identities=29% Similarity=0.583 Sum_probs=36.3
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 132 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~ 132 (362)
...+..+++.|+.+...|..||..++++...+..++..+++.+..+.+
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888888888888888888887776655543
No 23
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.22 E-value=29 Score=37.79 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPG 149 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~pg 149 (362)
-+..|+..+..-.++|+.++++...++..-..|.+|+...-.+|.-++..+.++++.++
T Consensus 589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~ 647 (741)
T KOG4460|consen 589 HVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFH 647 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 45667777777778888899999888888899999999999999999999999988765
No 24
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=65.43 E-value=26 Score=30.25 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
.++..|..|-.+...|...|..+-.++..+..+.+.|++||...
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666677777777777777777777788888888765
No 25
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=64.99 E-value=50 Score=26.24 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 142 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~ 142 (362)
.+..|-++|.+....+..-+-+|+.+...++.++..+..++...+..-..+-.++.
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566677767667777777888888888888888888888887777666665554
No 26
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=64.75 E-value=50 Score=30.36 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 142 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~ 142 (362)
+|..|+.+...+..-++.++.+...+..++..+++++..++.....++.-+.
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444556666667777777778888888888877775443
No 27
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=64.00 E-value=50 Score=28.95 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQ 135 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qq 135 (362)
.+...+.++..|...|...+.+++.+...++.++..++.+...++...+
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666665555554444433
No 28
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=63.39 E-value=26 Score=27.58 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV 141 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL 141 (362)
.++|+.++..|..++..++.+... |.+++.....+...|++-|
T Consensus 16 ~~~L~~EN~~Lr~q~~~~~~ER~~-------L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 16 LERLKSENRLLRAQEKTWREERAQ-------LLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 344445555554444444443333 3334444444444555444
No 29
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=63.36 E-value=19 Score=30.50 Aligned_cols=36 Identities=8% Similarity=0.060 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRER 126 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ER 126 (362)
.+..++++...+..++.+++++++.+..++..|+..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 456677777777778888888887777777777653
No 30
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.63 E-value=46 Score=31.70 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
+.++-..|..++..|..|+..++..+..++.++...++.+..+++++..+-..-..+.+
T Consensus 47 ~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 47 WDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666777777777777777666665555554
No 31
>PRK00736 hypothetical protein; Provisional
Probab=61.84 E-value=38 Score=26.54 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 129 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~ 129 (362)
++.++.-+..-...|...|.++.++...+..+|..|.+||..
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555666666666666666666666666666543
No 32
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=61.83 E-value=69 Score=26.02 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQRHEQERQGFESQ-------MQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rlrqqqq~l~~q-------vq~L~ERL~~~E~~Qqqml 138 (362)
++.+|.+...+..|+...+.+...++.+ |+.+++.+..+|..+.+|=
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK 59 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555554444433 5556666666666666654
No 33
>PRK00295 hypothetical protein; Provisional
Probab=61.53 E-value=43 Score=26.22 Aligned_cols=40 Identities=15% Similarity=0.028 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 129 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~ 129 (362)
.++.-+..-...|...|.++.++...++.++..|.+||..
T Consensus 12 ~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 12 SRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445556566666666656666666666655543
No 34
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=60.17 E-value=95 Score=25.47 Aligned_cols=46 Identities=11% Similarity=0.293 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQL-------LRERFQLMEQR 133 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~-------L~ERL~~~E~~ 133 (362)
++.+|...=..+..|..||..+++++..+..+++. |.+..+.+.+.
T Consensus 9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45566655566778888888888888888888776 55555544443
No 35
>PRK09039 hypothetical protein; Validated
Probab=59.49 E-value=62 Score=32.71 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQ 119 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~q 119 (362)
++..++........++.+|+++...++.|
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 36
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.28 E-value=60 Score=32.35 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 142 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~ 142 (362)
+++.|+.+...+..+|...+++...++.++..+.+.+.....+.+.+..-+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555554444444333
No 37
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=59.10 E-value=5.3 Score=36.76 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018006 97 KEKEILLLELQRHEQERQGFESQMQLLRERFQL 129 (362)
Q Consensus 97 ~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~ 129 (362)
.+++.|..++|||+.+...|+.++ .+++++..
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHHHHHCH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 456777778888887777777777 66666543
No 38
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.89 E-value=34 Score=26.71 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
+.++.-+......|...|.++.++...++.++..|.+||..+
T Consensus 10 E~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 10 EIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555555555555555555555443
No 39
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=58.29 E-value=39 Score=25.86 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 94 RLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 94 ~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
.|..+...+...+..++. +.+.+++.+..+++.-+.+|...--|
T Consensus 4 elEn~~~~~~~~i~tvk~-------en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 4 ELENELPRIESSINTVKK-------ENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444 44455556666666667777654443
No 40
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.63 E-value=75 Score=25.68 Aligned_cols=50 Identities=10% Similarity=0.312 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 137 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqm 137 (362)
++++|..-=.-+..|..|+..|+.++..+..+++.+......++....++
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445667778888888888888887777666655555554444
No 41
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.09 E-value=87 Score=28.08 Aligned_cols=54 Identities=28% Similarity=0.308 Sum_probs=28.1
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
+..+..++..|..++..|..+++..+.+...++.....+...|...|+...+|.
T Consensus 68 l~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~ 121 (140)
T PF10473_consen 68 LNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLK 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555555555544433333
No 42
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.58 E-value=65 Score=28.82 Aligned_cols=61 Identities=23% Similarity=0.307 Sum_probs=31.4
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 83 SERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQ--MQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 83 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~q--vq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
.+...|+.+|..|+.+...|..++..++.+...+... ...|...+..++.....|-.-|..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666655555555555555555444444 233444455555555555544444
No 43
>PRK15396 murein lipoprotein; Provisional
Probab=56.58 E-value=92 Score=25.35 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 139 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqmls 139 (362)
.++++|..+...|..++..+++..+.+...++.-++.-.+.-+|...+..
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~ 74 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAT 74 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888888888888888888877777777777666553
No 44
>PRK04325 hypothetical protein; Provisional
Probab=56.34 E-value=50 Score=26.29 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 97 KEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 97 ~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
.-...|...|.++.++...++.++..|.+||
T Consensus 23 ~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 23 DLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 45
>PRK04406 hypothetical protein; Provisional
Probab=56.21 E-value=49 Score=26.52 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 98 EKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 98 d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
-...|...|.++.++...+..++..|.+||
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 46
>PRK11637 AmiB activator; Provisional
Probab=55.78 E-value=63 Score=33.22 Aligned_cols=53 Identities=9% Similarity=0.066 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
+|..+...+..+..+|..++.+...++.++..++++|...+..-.+++..+.+
T Consensus 83 qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 83 AISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444443333
No 47
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.75 E-value=59 Score=26.79 Aligned_cols=63 Identities=19% Similarity=0.398 Sum_probs=44.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 83 SERQGLKDDIERLKKEKEILLLELQRHEQE---RQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 83 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqq---qq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
.++..+..+++.|+.++..+..++..+... ...+..++..+++.+..++.....+-.-|..++
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999988888888776652 445666677777777777776666665555543
No 48
>PRK02793 phi X174 lysis protein; Provisional
Probab=54.57 E-value=56 Score=25.87 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 97 KEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 97 ~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
.-...|...|.+++++...+..++..|.+||
T Consensus 22 ~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 22 ITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444454444444444455444444
No 49
>PRK00846 hypothetical protein; Provisional
Probab=54.18 E-value=59 Score=26.39 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=21.0
Q ss_pred cHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLK-------KEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 88 l~~eIe~LK-------~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
++++|+.|. .-...|...|.++.++...+..++..|.+||..+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555554 2344444445555555555555555555554433
No 50
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=54.15 E-value=59 Score=30.57 Aligned_cols=56 Identities=9% Similarity=0.302 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
++.+|++|..-...+...|....++.-.+...+..|+++|..++.+-.+|+..|..
T Consensus 84 lE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 84 LEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67778888666666666666555566677888999999999999999999887773
No 51
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=54.06 E-value=83 Score=30.54 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 100 EILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 100 ~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
..|...|..|+++...+.-++..+.-+|+.+.++|+.+-.=|-+.+
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666677777777777777777765555533
No 52
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.79 E-value=99 Score=23.69 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQM 120 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qv 120 (362)
++.++.++.-....+..|++.++...+.++.-+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555544444444333
No 53
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.54 E-value=61 Score=34.52 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=27.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQL 122 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~ 122 (362)
..++.+++.|.+++..|..|-.+|++....+..+++.
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~ 105 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ 105 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3567788888888888888888888877666666543
No 54
>PRK02119 hypothetical protein; Provisional
Probab=53.38 E-value=59 Score=25.83 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 99 KEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 99 ~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
...|...|.++.++...+..++..|.+||
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=53.32 E-value=48 Score=32.24 Aligned_cols=53 Identities=26% Similarity=0.314 Sum_probs=38.2
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018006 82 ESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 134 (362)
Q Consensus 82 e~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Q 134 (362)
..+...+..++..+++....|..||..+...++.++.++..+++++..++..-
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777887777777777777777777776665543
No 56
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.88 E-value=47 Score=29.67 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018006 95 LKKEKEILLLELQRHEQERQGFESQMQLLR 124 (362)
Q Consensus 95 LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ 124 (362)
|+.++..|.++|.+|++++..+..++.+++
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444444333333333
No 57
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=52.49 E-value=45 Score=27.42 Aligned_cols=41 Identities=32% Similarity=0.555 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
+...++.|.+++..|+.+|..++....=+..|++.+.+|+.
T Consensus 5 ~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~ 45 (84)
T PF11414_consen 5 MLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQR 45 (84)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988888888888888754
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=52.30 E-value=1.1e+02 Score=27.52 Aligned_cols=60 Identities=15% Similarity=0.319 Sum_probs=43.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
..+..+++.+......+..++..++...+.........++++...+...+.+..-+..+.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888887777777777777777777777777666666665554
No 59
>PRK10963 hypothetical protein; Provisional
Probab=52.10 E-value=66 Score=30.40 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.9
Q ss_pred eCCCcCcCCccccccccc
Q 018006 44 ANEDFVRGQPERLKNIHR 61 (362)
Q Consensus 44 ~h~~F~Rg~p~LL~~IkR 61 (362)
.||+|--.+|+||..|+=
T Consensus 14 ~~PdFf~~h~~Ll~~L~l 31 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRV 31 (223)
T ss_pred HCchHHhhCHHHHHhccC
Confidence 699999999999998754
No 60
>smart00338 BRLZ basic region leucin zipper.
Probab=51.94 E-value=34 Score=25.89 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqq 112 (362)
++.++..|...+..|..++..|+.+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 61
>PRK11637 AmiB activator; Provisional
Probab=51.39 E-value=85 Score=32.25 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 132 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~ 132 (362)
..+|+.|...+..+..+|..++++...++.++..++++|...+.
T Consensus 74 ~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 74 LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555555555554444
No 62
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.28 E-value=64 Score=28.86 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=16.8
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 84 ERQGLKDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 84 e~~~l~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
+...+..++..|+.+...|..||..|..
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666666666666666655443
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.16 E-value=88 Score=32.93 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=38.4
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM---EQRQQKMVSFVGRALQ 146 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~---E~~QqqmlsFL~~vlq 146 (362)
.+.++.+|..++.+...+..+|.........++..+..+..+|... +..|+..+.-+..+++
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~ 125 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQ 125 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777666666666666666666666555444 3455666666555554
No 64
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=48.88 E-value=1e+02 Score=24.04 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLME 131 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E 131 (362)
+++|..|.-..+-+..-|..|.+.-...+.++..|+.++..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655555444444444444333333333444444443333
No 65
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=48.65 E-value=77 Score=25.90 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=35.4
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 84 ERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 84 e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
++..+..+|..|+..+..|..++...+.++..+..+-+.|.+=+
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999888888877777777666544
No 66
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=48.37 E-value=1.1e+02 Score=26.79 Aligned_cols=49 Identities=12% Similarity=0.235 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
.+++.+......+..+|..++.....+..++..++.++..+.++.=+++
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~ 92 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVL 92 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666644444444445555444444444333333
No 67
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.79 E-value=1e+02 Score=28.66 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQG 115 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~ 115 (362)
+..+|..|+.++..|..++..++.+...
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444444333
No 68
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=46.99 E-value=86 Score=32.50 Aligned_cols=74 Identities=15% Similarity=0.264 Sum_probs=51.7
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchhccc
Q 018006 82 ESERQGLKDDIERLKKEKEILLLELQRHEQE----RQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ-KPGLESNFG 155 (362)
Q Consensus 82 e~e~~~l~~eIe~LK~d~~~L~~EL~rlrqq----qq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq-~pgfl~~L~ 155 (362)
+.++..+..+++.|+.+++.+..++..+... .+.+..++..+++++..++.....+-.-+...+- =|.+++.-+
T Consensus 36 d~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~v 114 (418)
T TIGR00414 36 DDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESV 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 3456778899999999999999998664322 3456667788888888888887777766655443 344554444
No 69
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=46.87 E-value=1.4e+02 Score=28.92 Aligned_cols=42 Identities=21% Similarity=0.410 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 129 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~ 129 (362)
...++..++.....|..+|..++..+..++.++..++.++..
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 455677777777777777777777777777777777666543
No 70
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.74 E-value=1.3e+02 Score=30.28 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
++.++|.+...+..++...+.+...++.+++.+..++.....+.+.+..-++.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555444444444433
No 71
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.65 E-value=77 Score=35.31 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=6.2
Q ss_pred cHHHHHHHHHH
Q 018006 88 LKDDIERLKKE 98 (362)
Q Consensus 88 l~~eIe~LK~d 98 (362)
++.+|++||.|
T Consensus 423 LE~dvkkLrae 433 (697)
T PF09726_consen 423 LEADVKKLRAE 433 (697)
T ss_pred HHHHHHHHHHH
Confidence 55566555544
No 72
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=46.57 E-value=87 Score=33.40 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=46.5
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
...+..+|.+|.+++..+...|...+ +.++.|...|.+.+..|..++..|..||..+
T Consensus 424 ~~~l~~~i~~l~~~i~~~~~rl~~~e---~~~~~qf~~m~~~~~~m~sq~~~L~q~l~~~ 480 (483)
T COG1345 424 TDSLNKQIKSLDKDIKSLDKRLEAAE---ERYKTQFNTLDDMMTQMNSQSSYLTQQLVSV 480 (483)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34578889999999988887666544 5578899999999999999999998888764
No 73
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.54 E-value=1.7e+02 Score=25.54 Aligned_cols=41 Identities=32% Similarity=0.464 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
+..++++|+.+...|..++..++++..........+...+.
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544444444444444444444444444444433
No 74
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=46.27 E-value=77 Score=30.89 Aligned_cols=46 Identities=35% Similarity=0.497 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR 133 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~ 133 (362)
+..+++++.++...+..++..++.+...++..++.+++|+...+..
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555566666655544443
No 75
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=46.00 E-value=64 Score=29.73 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
++|-+.|+.++..+..||+.|+|-...-+.++..|+.+|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344556666666677777777777666666677777664
No 76
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=45.95 E-value=92 Score=30.70 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
+|+.+|..|..++..|.+|=.+|+..+..+-.+-+.|..+|.
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 467777777777777777777777777776666555555443
No 77
>PRK09039 hypothetical protein; Validated
Probab=45.69 E-value=1.2e+02 Score=30.76 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
+..+|+.|+..+..|..+|.-++++......++..|+.+|+..
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555433
No 78
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.24 E-value=1.3e+02 Score=29.79 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQK 136 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqq 136 (362)
...+|+..+.+...+..||.+.+++.+.+..++..+++||..++.+--.
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTR 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555567777777888888888888888888888888888765433
No 79
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=44.85 E-value=1.2e+02 Score=22.82 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 018006 101 ILLLELQRHEQERQGFESQMQLLRE 125 (362)
Q Consensus 101 ~L~~EL~rlrqqqq~l~~qvq~L~E 125 (362)
.|..++..|..++..+..++..|..
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 80
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=44.84 E-value=1.4e+02 Score=23.43 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018006 99 KEILLLELQRHEQERQGFESQMQLLRE 125 (362)
Q Consensus 99 ~~~L~~EL~rlrqqqq~l~~qvq~L~E 125 (362)
++.+..+|.+|+|+...+..-+.+|.+
T Consensus 6 qaeirl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 6 QAEIRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334555566666666555555555543
No 81
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=44.65 E-value=1.2e+02 Score=26.47 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=29.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
..+..++..|...+-.+..+|..++.+.......+..|+.+....+++++.+.
T Consensus 37 ~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~ 89 (150)
T PF07200_consen 37 EELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELS 89 (150)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555566666666666566666666666666666665554
No 82
>PRK06798 fliD flagellar capping protein; Validated
Probab=44.05 E-value=84 Score=32.92 Aligned_cols=54 Identities=6% Similarity=0.185 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 142 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~ 142 (362)
..++.+|.+|...+..+...+.+.+ +.++.|..+|+..+.+|..++..|.+++.
T Consensus 382 ~~l~~~i~~l~~~~~~~e~rl~~~e---~~l~~qf~ale~~ms~lnsQ~s~l~~~~~ 435 (440)
T PRK06798 382 KSIDNRVSKLDLKITDIDTQNKQKQ---DNIVDKYQKLESTLAALDSQLKTIKAMTK 435 (440)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777766555443 34567777788777777766655555443
No 83
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.81 E-value=1.1e+02 Score=25.77 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018006 105 ELQRHEQERQGFESQMQLLRERFQLMEQR 133 (362)
Q Consensus 105 EL~rlrqqqq~l~~qvq~L~ERL~~~E~~ 133 (362)
++.+|+-....++-++..|..+++.+.+.
T Consensus 66 dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444433
No 84
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=43.50 E-value=74 Score=29.38 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=9.5
Q ss_pred cCcCCccccccccccCC
Q 018006 48 FVRGQPERLKNIHRRKP 64 (362)
Q Consensus 48 F~Rg~p~LL~~IkRrk~ 64 (362)
|.......|..|++-+.
T Consensus 38 y~~~dl~~L~~I~~l~~ 54 (175)
T PRK13182 38 FTEEDLQLLEYVKSQIE 54 (175)
T ss_pred ECHHHHHHHHHHHHHHH
Confidence 33444466777776543
No 85
>PF14282 FlxA: FlxA-like protein
Probab=43.21 E-value=1.7e+02 Score=24.58 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQE----RQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqq----qq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
...|+.|++.+..|..+|..+... -..-..+++.|...|..++....++.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777666551 12223344444444444444433333
No 86
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=43.17 E-value=90 Score=32.12 Aligned_cols=29 Identities=38% Similarity=0.461 Sum_probs=24.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 84 ERQGLKDDIERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 84 e~~~l~~eIe~LK~d~~~L~~EL~rlrqq 112 (362)
|-.++..|..+||++++.|..||.+|+.+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45668889999999999999999998554
No 87
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=43.13 E-value=1.6e+02 Score=23.15 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 132 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~ 132 (362)
.+..+...|+.....+..|=..|.+++.....+|.+|-.||..||+
T Consensus 18 ~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 18 RLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3556666666666666666666777777777777777777776664
No 88
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=42.98 E-value=88 Score=28.51 Aligned_cols=20 Identities=5% Similarity=0.355 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 018006 126 RFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 126 RL~~~E~~QqqmlsFL~~vl 145 (362)
.+..++.++.+||..+..++
T Consensus 132 e~~~l~er~~e~l~~~~e~v 151 (158)
T PF09744_consen 132 EYNRLHERERELLRKLKEHV 151 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556666666665555444
No 89
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.10 E-value=1.4e+02 Score=31.98 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 97 KEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 142 (362)
Q Consensus 97 ~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~ 142 (362)
.....|..+|..++++.+.+..+.+.++++|..++...++|-.-+.
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666565666666667777777666666665553
No 90
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=41.39 E-value=1.3e+02 Score=27.08 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=36.5
Q ss_pred cccHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 86 QGLKDDIERLKKEKEILL-----LELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~-----~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
..+..|+.+|++|+..+. +.=.|++.+...++.++..+.+.+.........++..+..++.
T Consensus 43 ~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (161)
T PF04420_consen 43 RQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLT 108 (161)
T ss_dssp HHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655443 3345667677777777777777777777777777777666554
No 91
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.19 E-value=83 Score=23.96 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQRHEQERQGFESQMQLL 123 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L 123 (362)
+..++.+...|..++..+++++..++.++..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555554444444
No 92
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=41.07 E-value=2.1e+02 Score=23.85 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 90 DDIERLKKEKEI-LLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSF 140 (362)
Q Consensus 90 ~eIe~LK~d~~~-L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsF 140 (362)
..+..||+..+. -...|..|+.++..+..++..|+.+|......-+.++..
T Consensus 34 ~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 34 TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555544322 224555666666666666666666666665555565543
No 93
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.91 E-value=58 Score=34.75 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 134 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Q 134 (362)
..+.|++.++.|..|++.+..+.+.++.++..|++.+..++.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444444555555555555555555554
No 94
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.64 E-value=96 Score=32.24 Aligned_cols=74 Identities=19% Similarity=0.350 Sum_probs=51.7
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchhccc
Q 018006 82 ESERQGLKDDIERLKKEKEILLLELQRHEQE---RQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ-KPGLESNFG 155 (362)
Q Consensus 82 e~e~~~l~~eIe~LK~d~~~L~~EL~rlrqq---qq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq-~pgfl~~L~ 155 (362)
+.++..+..+++.|++++..+..++..+... .+.+..++..+++++..++.....+-.-+...+- =|.+++.-+
T Consensus 34 d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~v 111 (425)
T PRK05431 34 DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSV 111 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 3456778889999999999999998764333 2346667788888888888888777766666443 355555444
No 95
>PRK14127 cell division protein GpsB; Provisional
Probab=40.54 E-value=83 Score=27.12 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
++.+-.+...|..|+.+|+.++..++.++..++.++.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555667777777777777776666666666555543
No 96
>PLN02678 seryl-tRNA synthetase
Probab=40.24 E-value=1.2e+02 Score=32.12 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=49.8
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcchhccc
Q 018006 82 ESERQGLKDDIERLKKEKEILLLELQRHE---QERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ-KPGLESNFG 155 (362)
Q Consensus 82 e~e~~~l~~eIe~LK~d~~~L~~EL~rlr---qqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq-~pgfl~~L~ 155 (362)
+.++..+..+++.|+.++..+..++..+. .+...+..++..|++++..++.....+-.-|..++. =|.+.+.-+
T Consensus 39 d~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~V 116 (448)
T PLN02678 39 DKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSV 116 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 34567788899999999999988886533 223345556777888888888877777766666553 244444433
No 97
>PRK04325 hypothetical protein; Provisional
Probab=40.22 E-value=1.9e+02 Score=22.99 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRER 126 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ER 126 (362)
++++|..|+-..+-+..-|..|.+....-+.++..|+.+
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~q 45 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQ 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665544444433333333333333333333333
No 98
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=39.99 E-value=1.7e+02 Score=24.02 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 101 ILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 101 ~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
.+..++++|......+..++-....|..+++.-|..+..-|..+
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444455555555555555444443
No 99
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.84 E-value=1e+02 Score=26.99 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ 124 (362)
.-++.|+...+.|..+|.+++.+...+..++..|+
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666665555444433333333
No 100
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=39.73 E-value=2.2e+02 Score=25.59 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHE 110 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlr 110 (362)
++..++.....+..|+..++
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 101
>smart00338 BRLZ basic region leucin zipper.
Probab=39.70 E-value=1.3e+02 Score=22.60 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 018006 92 IERLKKEKEILLLELQRHEQERQGF 116 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rlrqqqq~l 116 (362)
+..|......|..+...|+.+...+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443344433333333333333
No 102
>PRK02119 hypothetical protein; Provisional
Probab=39.01 E-value=2e+02 Score=22.86 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=6.1
Q ss_pred cHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKE 100 (362)
Q Consensus 88 l~~eIe~LK~d~~ 100 (362)
++++|..|.-..+
T Consensus 7 ~e~Ri~~LE~rla 19 (73)
T PRK02119 7 LENRIAELEMKIA 19 (73)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555544433
No 103
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=38.50 E-value=1.9e+02 Score=24.67 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLL 123 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L 123 (362)
+-+.|..|......|..+|..|+.+...+-.+-+.|
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444333333333
No 104
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.39 E-value=1.6e+02 Score=24.74 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRH--EQERQGFESQMQLLRERFQLMEQRQQKMVSF 140 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rl--rqqqq~l~~qvq~L~ERL~~~E~~QqqmlsF 140 (362)
+++..+.+-...|..+|..+ +++-..+...|..|+.++..++.+-+.|-.-
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~ 94 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQ 94 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333344444444555544 4444555555555555555555555555433
No 105
>PF14282 FlxA: FlxA-like protein
Probab=37.92 E-value=1.5e+02 Score=24.93 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=39.9
Q ss_pred hhhhcccHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018006 82 ESERQGLKDDIERLKKEKEILLL----ELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 137 (362)
Q Consensus 82 e~e~~~l~~eIe~LK~d~~~L~~----EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqm 137 (362)
+.....|..+|..|+..+..|.. .-..-+++.+.+..||..|..+|..++..+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456688888889888887776 123345667788889999999888776655443
No 106
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=37.72 E-value=1.3e+02 Score=32.80 Aligned_cols=48 Identities=27% Similarity=0.446 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQER-------QGFESQMQLLRERFQLMEQRQ 134 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqq-------q~l~~qvq~L~ERL~~~E~~Q 134 (362)
.+++++..|+.++..|..+|.+++.+. ..++.++|.|.++|..+.+..
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h 220 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIH 220 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 467777777777778887777776532 234566888888887776433
No 107
>PHA01750 hypothetical protein
Probab=35.90 E-value=1.1e+02 Score=24.45 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018006 96 KKEKEILLLELQRHEQERQGFESQMQLLRER 126 (362)
Q Consensus 96 K~d~~~L~~EL~rlrqqqq~l~~qvq~L~ER 126 (362)
+++..+|..|++.++-.+-+++.|+..++.+
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444455555554444444455555544443
No 108
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.85 E-value=1.4e+02 Score=27.51 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018006 102 LLLELQRHEQERQGFESQMQLLRERFQLMEQRQQK 136 (362)
Q Consensus 102 L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqq 136 (362)
+..|..+++.+...+..++..|+..+..++.++..
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 109
>PRK00295 hypothetical protein; Provisional
Probab=35.80 E-value=2.1e+02 Score=22.32 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
++++|..|+-..+-+..-|..|.+....-+.++..|+.++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665544444333333333333333344444333
No 110
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=35.30 E-value=2.1e+02 Score=25.79 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 134 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Q 134 (362)
.++.-|+.|++....|...+..+.+..+.+..++..+...++...+++
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777666666666666666666665555444433
No 111
>PRK04406 hypothetical protein; Provisional
Probab=35.28 E-value=2.3e+02 Score=22.63 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=6.4
Q ss_pred cHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEI 101 (362)
Q Consensus 88 l~~eIe~LK~d~~~ 101 (362)
++.+|..|.-..+-
T Consensus 9 le~Ri~~LE~~lAf 22 (75)
T PRK04406 9 LEERINDLECQLAF 22 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555444333
No 112
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.09 E-value=1.5e+02 Score=24.51 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
...-+..|+.....|..++.++..+...+..++..++.+|..+
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777788888888888888888888888888777654
No 113
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.36 E-value=2.3e+02 Score=25.04 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
++..+....+.+..|..|+.+.+...+....+++.|+...+..+..-.....-+..|+
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVL 89 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 4444555555555666666666655555555555555555544444444443333333
No 114
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.90 E-value=2.6e+02 Score=26.36 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=12.2
Q ss_pred hhhhhhhHHHHHHHHhhh
Q 018006 207 EQLESSMTFWENIVQDVG 224 (362)
Q Consensus 207 ~~~essl~~~E~~~~~~~ 224 (362)
+.+-.||.+-=-|++=++
T Consensus 195 ~~isaALgyvahlv~lls 212 (302)
T PF10186_consen 195 EEISAALGYVAHLVSLLS 212 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567778877766666554
No 115
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.89 E-value=2.7e+02 Score=26.85 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
.+..+++.|..++.....||.-+.++...|+.-+...+..........+++.
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666665555544333333333333
No 116
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=33.65 E-value=2.2e+02 Score=21.89 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
|..+|..|......|..++..++.+-+....+.....+||...
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555555666666666543
No 117
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.45 E-value=2.6e+02 Score=27.87 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=5.5
Q ss_pred hhhhhhhHHHHHH
Q 018006 207 EQLESSMTFWENI 219 (362)
Q Consensus 207 ~~~essl~~~E~~ 219 (362)
..|-..+..||++
T Consensus 279 ~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 279 KRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 118
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=33.27 E-value=2.2e+02 Score=27.17 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=25.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQ 119 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~q 119 (362)
.+..+.+.|...+..|..++..++.++|.+..+
T Consensus 35 ~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~e 67 (228)
T PRK06800 35 EIQKDHEELLAQQKSLHKELNQLRQEQQKLERE 67 (228)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888887777654
No 119
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=33.23 E-value=2.2e+02 Score=21.74 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqq 112 (362)
+..++.+|.+++..+..++.++...
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~k 26 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKK 26 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777766666544
No 120
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=33.15 E-value=1.6e+02 Score=30.70 Aligned_cols=13 Identities=8% Similarity=0.440 Sum_probs=5.3
Q ss_pred hHHHHHHHHHHHH
Q 018006 115 GFESQMQLLRERF 127 (362)
Q Consensus 115 ~l~~qvq~L~ERL 127 (362)
+++.++..|+||+
T Consensus 280 ~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 280 NLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHhHHHHH
Confidence 3333444444443
No 121
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.87 E-value=1.1e+02 Score=29.60 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=18.9
Q ss_pred ceEeCCCcCcCCccccccccccC
Q 018006 41 WEFANEDFVRGQPERLKNIHRRK 63 (362)
Q Consensus 41 ~eF~h~~F~Rg~p~LL~~IkRrk 63 (362)
|-+.||.|-+-+++|+..|.-..
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph 34 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPH 34 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCC
Confidence 44679999999999999987643
No 122
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.80 E-value=68 Score=32.78 Aligned_cols=57 Identities=25% Similarity=0.433 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQER----QGFESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqq----q~l~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
.+..+|+.|++.+..+..++..+.... ..+..+|..+++|+..+|.+...|..-+..
T Consensus 109 elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~ 169 (370)
T PF02994_consen 109 ELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKE 169 (370)
T ss_dssp ---------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHH
Confidence 356677777776666666665554433 245677888888887777777666554443
No 123
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=32.58 E-value=3.4e+02 Score=23.96 Aligned_cols=59 Identities=10% Similarity=0.227 Sum_probs=40.7
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 84 ERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 84 e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
.+.+|.+-.+.+-+....++..|...|.+ +..+++.|-.+|..+..-++.|-.-+..+-
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~tKkh---LsqRId~vd~klDe~~ei~~~i~~eV~~v~ 95 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSSTKKH---LSQRIDRVDDKLDEQKEISKQIKDEVTEVR 95 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777888777776655 456777777777777766666665554443
No 124
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.41 E-value=1.9e+02 Score=30.93 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=40.9
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKD-DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV 141 (362)
Q Consensus 88 l~~-eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL 141 (362)
++. +++++++....+..|+..+++++..++..-+.++.+++....+++++..-|
T Consensus 344 ~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel 398 (493)
T KOG0804|consen 344 YEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKEL 398 (493)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 777888888888888888888888888888888888777766666655433
No 125
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=32.29 E-value=2.6e+02 Score=25.25 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ 124 (362)
++++|+.++..+..+|.+-+++.+.+..|..+++
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~k 35 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQQVAFK 35 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888887777766666555555544443
No 126
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=32.27 E-value=1.9e+02 Score=32.15 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
.+..+|.++.+.+..+...|.+.+ +.++.|..+|+..|..|...+.-|.+|+.+
T Consensus 604 ~l~~~i~~l~~~i~~~e~rl~~~e---~rl~~QFtaME~~msqmnsqss~L~~~~~~ 657 (661)
T PRK06664 604 GLDERIADNNKKIEEYEKKLESKE---RKLKGKYLTMDQTVKKMKEQSNYLKNFNKS 657 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666666665554443 335566777777777776666666665544
No 127
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=31.98 E-value=2.2e+02 Score=29.44 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQL--LRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~--L~ERL~~~E~~QqqmlsFL~~ 143 (362)
.+|...|+.++..|.+|...|+.+-..++..+.. +.++.+.++..-.+++..+-+
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk 87 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNK 87 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777666666666543 455555555555555554444
No 128
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.71 E-value=2e+02 Score=20.85 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rlrqq 112 (362)
.+.|+.+...|..|..+|+.+
T Consensus 14 yd~Lk~~~~~L~~E~~~L~ae 34 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 129
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=31.66 E-value=4.6e+02 Score=26.65 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=32.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018006 83 SERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRER 126 (362)
Q Consensus 83 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ER 126 (362)
..+..+...|+.|++.+..|..||...+.....+...+.+|++-
T Consensus 20 ~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 20 ATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455777888888888888888877777777777777666664
No 130
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.44 E-value=3.3e+02 Score=24.99 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 99 KEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 99 ~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
...|..-|..+.+++ ....+|+.|+..+.....+.+.++.-|..+-+
T Consensus 11 d~~L~~~L~~l~~hq-~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~ 57 (188)
T PF10018_consen 11 DDELSSALEELQEHQ-ENQARIQQLRAEIEELDEQIRDILKQLKEARK 57 (188)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455554443 34667777777777777777777776666554
No 131
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.43 E-value=3e+02 Score=22.65 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 132 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~ 132 (362)
..++.+|..|..|...|-.+|-...-.-..++.-...+..||...-.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888877776665555555555555555544333
No 132
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=31.41 E-value=3.4e+02 Score=25.28 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 103 LLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 103 ~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
..++.++++++..+...++.|+.++...+.--+.++..+.+
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555666666655555555666555444
No 133
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=31.27 E-value=1.5e+02 Score=28.26 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
+|-+.|+.++..+..||..|||-...-+.++..|+.+|
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555666666666665555555555555554
No 134
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.12 E-value=1.8e+02 Score=25.82 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
..++..|......+-.||..|...++.++.++..+.++|.
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 135
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=30.87 E-value=3.1e+02 Score=23.67 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGF 116 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l 116 (362)
=+.+..|......|..+|..|+++...+
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el 34 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAEL 34 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443333
No 136
>PRK00736 hypothetical protein; Provisional
Probab=30.65 E-value=2.6e+02 Score=21.81 Aligned_cols=40 Identities=5% Similarity=0.077 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
++++|..|+-...-+..-|..|.+....-+.++..|..+|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655444443333333333333333334333333
No 137
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.51 E-value=2.7e+02 Score=27.59 Aligned_cols=63 Identities=17% Similarity=0.350 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCc
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ---RQQKMVSFVGRALQKPG 149 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~---~QqqmlsFL~~vlq~pg 149 (362)
.+..+|+.|-.....+...+..++.+...+...|..++..|..++. .++.++.-=+|.++-.|
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444444444444444444333333333333333333333332 23445554455555444
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.44 E-value=2.9e+02 Score=25.29 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQ 107 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~ 107 (362)
|..|+.+...|..++.
T Consensus 118 l~~l~~~~~~L~~~~~ 133 (194)
T PF08614_consen 118 LAELEAELAQLEEKIK 133 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 139
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=30.40 E-value=1.9e+02 Score=29.99 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018006 102 LLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK 147 (362)
Q Consensus 102 L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~ 147 (362)
+...++-++-+.+.+...++.|+|.+..+..+-++++.-...++++
T Consensus 335 ~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLqa 380 (400)
T COG5613 335 LQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQA 380 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445556666677777666666666666666665553
No 140
>PRK14157 heat shock protein GrpE; Provisional
Probab=30.37 E-value=2.9e+02 Score=26.78 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRER 126 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ER 126 (362)
.++.+|+.|+.+...+...+.|+.-+.+++..++..-+++
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~ 120 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDR 120 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999988888888888888877776665544443
No 141
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=30.35 E-value=2.9e+02 Score=24.18 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
++..+++.-+.....+...|..+......+..+-.....||..+.+++..|..-+.+++.
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~ 93 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLR 93 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666777777777666677777888888888888877777664
No 142
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=30.19 E-value=2e+02 Score=30.17 Aligned_cols=46 Identities=11% Similarity=0.252 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQ 135 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qq 135 (362)
.+..+|.+|.+++..|..+|.++++ .++.|..+|+.-+.+|...+.
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e~---rl~~qF~ame~~~s~mns~~s 455 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATIA---RYKAQFTQLDKLMTSLNSTSS 455 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444332 234455555555554444433
No 143
>PLN02320 seryl-tRNA synthetase
Probab=29.68 E-value=2e+02 Score=30.94 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=58.2
Q ss_pred CCCcCcCCccccc-cccccCCCcCCCCCCcCCCCCCCchhhhcccHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHH
Q 018006 45 NEDFVRGQPERLK-NIHRRKPVHSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQ--ERQGFESQMQ 121 (362)
Q Consensus 45 h~~F~Rg~p~LL~-~IkRrk~~~s~s~qn~~~qs~pl~e~e~~~l~~eIe~LK~d~~~L~~EL~rlrq--qqq~l~~qvq 121 (362)
.-.|.|.+|+.+. +|++|. ..- +... -.-.+.++..+..+++.|+.++..+..++..... +.+.+..++.
T Consensus 68 D~k~ir~n~~~v~~~l~~R~-~~~----~vd~--l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k 140 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNRN-SNA----NLEL--VLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGK 140 (502)
T ss_pred CHHHHHhCHHHHHHHHHhcC-CCc----CHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHH
Confidence 3567777877654 455543 110 0000 0001334566788888898888888887754111 2334555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCcchhccc
Q 018006 122 LLRERFQLMEQRQQKMVSFVGRAL-QKPGLESNFG 155 (362)
Q Consensus 122 ~L~ERL~~~E~~QqqmlsFL~~vl-q~pgfl~~L~ 155 (362)
.|++++..+|.....+-.-|..++ .=|.+.+.-+
T Consensus 141 ~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~V 175 (502)
T PLN02320 141 NLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDV 175 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 777777777777766665555543 2344544433
No 144
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=29.67 E-value=2.5e+02 Score=30.59 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
..++.++..++..|.++|..++++...+..+...|.+.|+.+-+.|.+|..-+.-+
T Consensus 225 t~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~El 280 (596)
T KOG4360|consen 225 TKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEEL 280 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455556666777777777777777777777777777777777777776655443
No 145
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=29.36 E-value=1.8e+02 Score=24.94 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
.+.+++.++-...+.|-..-+|-=|-.+.++.+|..|+.++...|.-.+.++
T Consensus 44 qllekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~ 95 (101)
T PF12308_consen 44 QLLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLS 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence 3556667777666666655555434446677888888888887777766665
No 146
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=29.26 E-value=62 Score=26.78 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=11.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 84 ERQGLKDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 84 e~~~l~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
.|.+++.|+..|+........+|..|++
T Consensus 37 ~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 37 ARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3344444444444444444444444333
No 147
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.06 E-value=2.9e+02 Score=21.81 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=7.9
Q ss_pred cHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILL 103 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~ 103 (362)
++++|..|.-..+-..
T Consensus 6 ~e~Ri~~LE~~lafQe 21 (72)
T PRK02793 6 LEARLAELESRLAFQE 21 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555665554443333
No 148
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=29.03 E-value=1.8e+02 Score=26.21 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=36.9
Q ss_pred CCCchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 78 TPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGF-ESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 78 ~pl~e~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l-~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
.+++......|.+|++.|+..+..+..++...+.+=-.. +..-++-++++...+.+.+.|-.-|..
T Consensus 6 ~~lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 6 KGLAPAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666677788888888776666655554333221000 112344555566666666666655554
No 149
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=28.76 E-value=1.7e+02 Score=26.49 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 018006 91 DIERLKKEKEILLLEL--QRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLE 151 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL--~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~pgfl 151 (362)
++.+|++....++.-. ..++.-......++..+++.+..++.+++.|-.-+...+++.|++
T Consensus 24 kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvv 86 (151)
T PF14584_consen 24 KLRKLKRRYDALMRGKDGKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVV 86 (151)
T ss_pred HHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEE
Confidence 4455555544443111 122333333344555666666666666667777777777766554
No 150
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.62 E-value=4e+02 Score=23.24 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
.|...|.++.-++..|..+|.++..+...+..++-.|-.....+
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888888888888888888877777665544
No 151
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.58 E-value=3e+02 Score=27.58 Aligned_cols=26 Identities=42% Similarity=0.542 Sum_probs=12.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqq 112 (362)
.+..++..|+++...|..|+..++.+
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444444444333
No 152
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.41 E-value=2.8e+02 Score=25.88 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEIL 102 (362)
Q Consensus 89 ~~eIe~LK~d~~~L 102 (362)
+.+|..|++....|
T Consensus 130 e~~i~~Le~ki~el 143 (190)
T PF05266_consen 130 ESEIKELEMKILEL 143 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 153
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=28.39 E-value=97 Score=25.20 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 018006 94 RLKKEKEILLLELQRH 109 (362)
Q Consensus 94 ~LK~d~~~L~~EL~rl 109 (362)
.|.+++..|..||+++
T Consensus 4 ei~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 4 EIQEENARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 154
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.36 E-value=56 Score=34.99 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQ 114 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq 114 (362)
.++++.|| .++.|.+||+.|++++.
T Consensus 24 ~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 24 ADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 34444444 55555555555555544
No 155
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.30 E-value=3.9e+02 Score=23.69 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=3.8
Q ss_pred hhhhhHHHHH
Q 018006 209 LESSMTFWEN 218 (362)
Q Consensus 209 ~essl~~~E~ 218 (362)
||.-..-||.
T Consensus 120 le~~~~~~E~ 129 (143)
T PF12718_consen 120 LEQERDQWEE 129 (143)
T ss_pred HHhhHHHHHH
Confidence 3333334433
No 156
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=28.09 E-value=4.4e+02 Score=25.70 Aligned_cols=40 Identities=15% Similarity=0.403 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
.+|++.|++++..+..+|..+++++...+.+...+.-.|.
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~ 81 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLE 81 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889888888888888887777777777666665554
No 157
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.08 E-value=1.2e+02 Score=29.50 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHhhhhhc
Q 018006 211 SSMTFWENIVQDVGQSC 227 (362)
Q Consensus 211 ssl~~~E~~~~~~~~~~ 227 (362)
..|..||.++.-++...
T Consensus 196 ~~L~~~eR~~ls~~r~v 212 (248)
T PF08172_consen 196 KRLSPPERIFLSLTRFV 212 (248)
T ss_pred hcCChHHHHHHHHHHHH
Confidence 36788888887766544
No 158
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.98 E-value=3.2e+02 Score=26.38 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
-|+.++++...|..|=..+-++.+.+...+..|+.-+...+....++..-+.+++
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666666666667776666666666666665555554
No 159
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.97 E-value=2.4e+02 Score=28.95 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQER---QGFESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqq---q~l~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
.+-++.|+..+..|..++..+.... .....++..+++++...+++...+-.++..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666555431 134567888888888888888887777654
No 160
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.93 E-value=3.7e+02 Score=24.89 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=16.0
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHH
Q 018006 84 ERQGLKDDIERLKKEKEILLLELQRH 109 (362)
Q Consensus 84 e~~~l~~eIe~LK~d~~~L~~EL~rl 109 (362)
+|..+..+++.|+.....|..||..+
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666543
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.69 E-value=2.2e+02 Score=31.59 Aligned_cols=42 Identities=29% Similarity=0.472 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
.++..+++|+.++..|..+|..++.+...++.++..++.++.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667788888888888888888888888877777776644
No 162
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.65 E-value=2.8e+02 Score=23.83 Aligned_cols=45 Identities=33% Similarity=0.422 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 132 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~ 132 (362)
+.+-++-|++....|...+.++.++...+..++..+.+.++.+..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666555555555555555555554433
No 163
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=27.11 E-value=3.7e+02 Score=26.10 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhccccccccccCCCCCCCcccCCCc
Q 018006 97 KEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDE 176 (362)
Q Consensus 97 ~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~pgfl~~L~q~~~~~~kKRRlp~~~~f~~e 176 (362)
-|.+.|++||.+++++...-....... ..-...+.++..|+ ..|| ||........|||.-..--|.+-
T Consensus 146 Dd~~~Ll~ELekIKkER~ee~~~~e~~-~~~~~~~~~~~~~~------~~Np-----Ll~~~~~~~~kr~W~ddvvFkN~ 213 (244)
T PF04889_consen 146 DDTAALLRELEKIKKERAEEKARKEEE-KAEEEEKEREENIL------SGNP-----LLNASGDFKVKRRWDDDVVFKNQ 213 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH------hCCc-----ccCCCCCCccccCCccccccccc
Confidence 356788888988888765322111111 11111122222222 2444 34455667788888766667666
Q ss_pred cccC
Q 018006 177 ANIE 180 (362)
Q Consensus 177 a~~e 180 (362)
+..+
T Consensus 214 ~~~~ 217 (244)
T PF04889_consen 214 ARGE 217 (244)
T ss_pred cCCC
Confidence 5433
No 164
>PHA02675 ORF104 fusion protein; Provisional
Probab=26.99 E-value=3.8e+02 Score=22.43 Aligned_cols=45 Identities=7% Similarity=-0.032 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 101 ILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 101 ~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
.|...|.+|.+..+.+-..|..+.++|.++|..-..|=.-|..+-
T Consensus 34 sle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~ 78 (90)
T PHA02675 34 SVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLN 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666777888888888888887666554444433
No 165
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.96 E-value=2.5e+02 Score=33.39 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ------RQQKMVSFVGRALQ 146 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~------~QqqmlsFL~~vlq 146 (362)
.+..+|..+|.+......+|.+++.+..++..+++.+++|+..+.. ...+++.+|.++-.
T Consensus 546 ~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~ke 611 (1293)
T KOG0996|consen 546 DLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKE 611 (1293)
T ss_pred HHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3566788888888888899999999999999999999988765533 45677777776543
No 166
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=26.92 E-value=1.3e+02 Score=30.01 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLEL--------QRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV 141 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL--------~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL 141 (362)
+.++..|.-.+..|.+.| .-+..+.+ +...+.+++|+|.+||..|+.||..-
T Consensus 223 EaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q-~raeL~acEEkl~kmeE~Qa~~l~~a 282 (311)
T PF04642_consen 223 EAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQ-ARAELNACEEKLKKMEEEQAEMLRAA 282 (311)
T ss_pred HhhhhheecccHHHHHhhcCCcchHHHHHhhHHH-HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444555554455555544 22333333 56778999999999999999998543
No 167
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=26.82 E-value=3.3e+02 Score=27.22 Aligned_cols=33 Identities=9% Similarity=0.276 Sum_probs=19.4
Q ss_pred Cccccc-----CCCCCCccccchhhhhhhhhhhHHHHHHHHhhhhhcc
Q 018006 186 TSQIVA-----GADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCF 228 (362)
Q Consensus 186 ~~~~~~-----~~~~~~~~~~~~e~~~~~essl~~~E~~~~~~~~~~~ 228 (362)
+.+++. +...++++.|+.-.+ |.|||-|++...
T Consensus 95 rKVVyaV~S~~g~~eNGv~~LSSsEV----------eELi~KAdE~t~ 132 (278)
T PF03285_consen 95 RKVVYAVHSGGGTSENGVHPLSSSEV----------EELIHKADEVTL 132 (278)
T ss_pred ceEEEEEecCCCcccCccccCcHHHH----------HHHHHhcccccc
Confidence 355555 344456666654433 556998977654
No 168
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.62 E-value=2.4e+02 Score=29.45 Aligned_cols=59 Identities=10% Similarity=0.195 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcCCcchhc
Q 018006 95 LKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ------QKMVSFVGRALQKPGLESN 153 (362)
Q Consensus 95 LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Q------qqmlsFL~~vlq~pgfl~~ 153 (362)
+.+....|..++.+++.....+...+..+.++|..+...+ .....++..++.++||-..
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~ 420 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKAS 420 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3344444555555555555545455555555554443322 2334566777777776543
No 169
>PRK07737 fliD flagellar capping protein; Validated
Probab=26.61 E-value=2.6e+02 Score=29.81 Aligned_cols=52 Identities=10% Similarity=0.287 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVG 142 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~ 142 (362)
+..+|.+|.+.+..|...|.+.+.. ++.|..+|+.-+.+|...+.-|...|.
T Consensus 446 l~~~i~~l~~~i~~~~~rl~~~e~r---y~~qf~ale~~~s~mnsq~s~L~~~l~ 497 (501)
T PRK07737 446 IGKDLNQIETQIDRFQDRLKQIEDR---YYKKFSAMEKAIQKANEQSMYLMNALG 497 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666665555544332 355666666666666665555554443
No 170
>PRK14154 heat shock protein GrpE; Provisional
Probab=26.57 E-value=3.7e+02 Score=25.72 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQL 122 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~ 122 (362)
.+..+|+.|+.+...|...+.|+.-+.+++..++..
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777766666666666655444443
No 171
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=26.43 E-value=3.9e+02 Score=25.02 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGF 116 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l 116 (362)
+|..|+.+...|..+|..++.++..+
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~L 38 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTL 38 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444
No 172
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=26.42 E-value=3.4e+02 Score=21.70 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQ 114 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq 114 (362)
.+..|++|++++..|..+|.-|++..+
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 466788888888888877766655544
No 173
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=26.30 E-value=1.6e+02 Score=28.71 Aligned_cols=14 Identities=14% Similarity=0.218 Sum_probs=8.7
Q ss_pred hhhhhhHHHHHHHH
Q 018006 208 QLESSMTFWENIVQ 221 (362)
Q Consensus 208 ~~essl~~~E~~~~ 221 (362)
.-|.+|+.++.|=.
T Consensus 175 ~YE~~l~PF~~F~~ 188 (248)
T PF08172_consen 175 AYEESLNPFAAFRK 188 (248)
T ss_pred HHHhccChHHHHhH
Confidence 34667777776654
No 174
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=26.20 E-value=3.7e+02 Score=23.29 Aligned_cols=38 Identities=32% Similarity=0.352 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~E 125 (362)
+..+++.++.....+..++..++.++...+.++..+-.
T Consensus 53 ~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 53 LEPELEELRSQLQELYEELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566666666666666666666666666555555443
No 175
>PRK14148 heat shock protein GrpE; Provisional
Probab=26.10 E-value=5.5e+02 Score=24.22 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
+..+++.|+.....|..++..++..+..+...+..++.|..
T Consensus 38 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 38 VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555545555555555543
No 176
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=25.90 E-value=4e+02 Score=27.75 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK 147 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~ 147 (362)
+..+..+++.|...+...++.|....+.++.++..+-++++..=+.+=.|+.-+...+.+
T Consensus 328 ~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLqavgdtlhn 387 (400)
T COG5613 328 LNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQAVGDTLHN 387 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666677777777777777777777777777777777777777777777777666653
No 177
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=25.70 E-value=3e+02 Score=30.06 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
.+++++.-+|+.+..|..|+.+|+.++-.+..+++.++.+|.
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999887653
No 178
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.53 E-value=3.6e+02 Score=26.54 Aligned_cols=38 Identities=37% Similarity=0.563 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 134 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Q 134 (362)
.+++.+.+++..|..|+.+++ .++..+++||..++...
T Consensus 142 ekl~E~~~EkeeL~~eleele-------~e~ee~~erlk~le~E~ 179 (290)
T COG4026 142 EKLEELQKEKEELLKELEELE-------AEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 334444455555555554444 44445555555554443
No 179
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.41 E-value=2.9e+02 Score=26.77 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
.++++.+|.+....-..-+..|.++...++.+|..|+.+++.+....++|..--..++.
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~ 96 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYL 96 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666555444444444555666667777777777777666666666655544443
No 180
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=25.22 E-value=3.1e+02 Score=22.91 Aligned_cols=39 Identities=26% Similarity=0.496 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
.+-+..|+.....+..++.++..+...+..++..++..|
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555665555555555444444444444433
No 181
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.15 E-value=2.7e+02 Score=28.80 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 96 KKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 96 K~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
|.+...|..=+.+++++++.++.|++++......+|.+-+++..-|+.
T Consensus 126 k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 126 KGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 334444444445566666666666666665555555555555444443
No 182
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=24.96 E-value=2.4e+02 Score=28.76 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=33.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHH
Q 018006 83 SERQGLKDDIERLKKEKEILLLELQRHEQERQG----------FESQMQLLRERFQLM 130 (362)
Q Consensus 83 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~----------l~~qvq~L~ERL~~~ 130 (362)
.+...+..++.+|+++...|..||.+.+..... +..++..|+++|..+
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 345678999999999999999999987543222 234555555555544
No 183
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=24.86 E-value=2.1e+02 Score=28.09 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQRH 109 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rl 109 (362)
+.+|++++..|..|+..+
T Consensus 68 ~~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555444
No 184
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=24.79 E-value=3.6e+02 Score=29.90 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=28.6
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 134 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Q 134 (362)
+..+..+|++|+.++..|..+|..+..+...-+..+..+.+++....++|
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~ 130 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQ 130 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666665555555555555555544444443
No 185
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.56 E-value=4.4e+02 Score=26.72 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 95 LKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 95 LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
.+.++..|.++|..+++.-+.+..+...|..+|......|.+|..-|..+-.
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqd 283 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQD 283 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666655555555555555666666667777777666655443
No 186
>PRK14155 heat shock protein GrpE; Provisional
Probab=24.45 E-value=4.6e+02 Score=24.98 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=25.0
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQ 121 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq 121 (362)
...+..+|+.|+.+...|...+.|+.-+.+++..++.
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~ 51 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAE 51 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888887777777777777766666554443
No 187
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=24.38 E-value=2.4e+02 Score=29.49 Aligned_cols=49 Identities=29% Similarity=0.434 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQK 136 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqq 136 (362)
++..|+.++.+..-|.+||.+.+..+..+..++..|++-+..+|--.|.
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4556788889999999999999999999999999999988777765543
No 188
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.36 E-value=2.9e+02 Score=22.08 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
...-++.|+.+...+..++.+++.+...+..++..++..|.
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777666666666666665543
No 189
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.23 E-value=3.8e+02 Score=27.72 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=9.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 018006 109 HEQERQGFESQMQLLRERFQLME 131 (362)
Q Consensus 109 lrqqqq~l~~qvq~L~ERL~~~E 131 (362)
-+++...-.+++.+++|+|....
T Consensus 240 t~EeL~~G~~kL~~~~etLEqq~ 262 (365)
T KOG2391|consen 240 TEEELNIGKQKLVAMKETLEQQL 262 (365)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333333344444444444333
No 190
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=24.21 E-value=3.7e+02 Score=21.40 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
+..+....+.....|...+...++++..+..++..|..++..+
T Consensus 19 y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 19 YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555544433
No 191
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.11 E-value=2.7e+02 Score=22.93 Aligned_cols=41 Identities=32% Similarity=0.424 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
+..-++-|++....|...+.+++++...+..++..+...++
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666776777766666666666655555555555443
No 192
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=23.81 E-value=3.5e+02 Score=29.60 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
+...+++|..--..+...|...+.+-..+-.++..|+++.+..+.+++-+..|+.+..
T Consensus 50 ~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~ 107 (618)
T PF06419_consen 50 LQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFT 107 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444555555555555566666666666667788888888888999998888888844
No 193
>PF09742 Dymeclin: Dyggve-Melchior-Clausen syndrome protein; InterPro: IPR019142 Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs. It is characteristically about 700 residues long and present in plants and animals. In humans, mutations in the gene coding for this protein give rise to a disorder called Dyggve-Melchior-Clausen syndrome (DMC, MIM 223800), which is an autosomal-recessive disorder characterised by the association of spondylo-epi-metaphyseal dysplasia and mental retardation []. This entry also includes Hid1 (high-temperature-induced dauer-formation protein 1) from Caenorhabditis elegans which encodes a novel highly conserved putative transmembrane protein expressed in neurons []. It contains up to seven potential transmembrane domains separated by regions of low complexity. Functionally this protein might be involved in vesicle secretion or be an inter-cellular signalling protein or be a novel insulin receptor [].
Probab=23.64 E-value=58 Score=35.90 Aligned_cols=19 Identities=42% Similarity=0.803 Sum_probs=15.3
Q ss_pred CcchHHHHHhhh---cCCCCCc
Q 018006 295 GVNDVFWEQFLT---ENPGSSD 313 (362)
Q Consensus 295 g~ND~FWeqfLt---e~pgs~~ 313 (362)
.-||.||+|||. .-|.+++
T Consensus 28 ~~~d~FW~qLlsf~~~~p~~s~ 49 (678)
T PF09742_consen 28 PDDDPFWNQLLSFSISPPTSSE 49 (678)
T ss_pred CcchHHHHHHHcccCCCCCChH
Confidence 479999999998 6666655
No 194
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.57 E-value=5.8e+02 Score=23.47 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 99 KEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 99 ~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
...|...+..+..+...+..++..|+.+|..++.+...++
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444445555555555555544444
No 195
>PRK14144 heat shock protein GrpE; Provisional
Probab=23.40 E-value=5.6e+02 Score=24.34 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=22.9
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQ 121 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq 121 (362)
...+..+|+.|+.+...|...+.|+.-+..++..++.
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~ 83 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELENVRRRME 83 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777666666555544433
No 196
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.29 E-value=4.6e+02 Score=25.19 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQ 121 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq 121 (362)
.+..+|+.|+.+...|...+.|+.-+.+++..++.
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~ 78 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVE 78 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666555555444433
No 197
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.27 E-value=2.7e+02 Score=24.86 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
.+.|+.....|..+|..++.+...+..+|..|+..|
T Consensus 83 ~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 83 QDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888888887655
No 198
>PRK14160 heat shock protein GrpE; Provisional
Probab=22.94 E-value=6.5e+02 Score=24.09 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=12.3
Q ss_pred hhhhhhhhHHHHHHHHhhh
Q 018006 206 FEQLESSMTFWENIVQDVG 224 (362)
Q Consensus 206 ~~~~essl~~~E~~~~~~~ 224 (362)
++-++.-+.-+.++|...|
T Consensus 138 ~~Gv~mi~kql~~vL~k~G 156 (211)
T PRK14160 138 KKGIEMTVKQFKTSLEKLG 156 (211)
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 4456666666777777665
No 199
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.88 E-value=6.6e+02 Score=24.21 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018006 98 EKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 132 (362)
Q Consensus 98 d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~ 132 (362)
+...+...++.++.+...+..+...|+.+|..++.
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~ 251 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLRELEQ 251 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHH
Confidence 33333333333333333333344444444444443
No 200
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.77 E-value=4.6e+02 Score=24.02 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
|..-|+.|... ..+..+|..|+.+...+..++..+-..|..++.....++
T Consensus 14 L~~~L~~l~~h-q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 14 LSSALEELQEH-QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555433 345778888888888888888888888887777766665
No 201
>PRK14143 heat shock protein GrpE; Provisional
Probab=22.54 E-value=4.6e+02 Score=25.45 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGF 116 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l 116 (362)
+..+|+.|+.+...|...+.|+.-+..++
T Consensus 72 l~~el~~l~~e~~elkd~~lR~~AdfeN~ 100 (238)
T PRK14143 72 LEQELESLKQELEELNSQYMRIAADFDNF 100 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 202
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.45 E-value=5.7e+02 Score=25.63 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR 133 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~ 133 (362)
..++...+.....+..+|..++.+++....+.+.|++.+..++.+
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~k 278 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERK 278 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444555555555555444444444444444444443
No 203
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.43 E-value=3.6e+02 Score=22.28 Aligned_cols=41 Identities=32% Similarity=0.455 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
+.+-++.|++....|..++..++.+...+..++..++..++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666666666666666665554
No 204
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.42 E-value=3.7e+02 Score=27.91 Aligned_cols=54 Identities=28% Similarity=0.252 Sum_probs=36.5
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
.+.++.=|.+++.++..|...|+.+.++....+.+.+.|...|..+-..|+.+.
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~ 182 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN 182 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777788888877877777777677777777666555555555444
No 205
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.32 E-value=3.7e+02 Score=30.12 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Q 018006 95 LKKEKEILLLELQRHEQERQGFESQMQLLRERFQL-------MEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 95 LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~-------~E~~QqqmlsFL~~vlq 146 (362)
++.....|..|+.+|+.+....+.++..|+..++. .+.....||+-|+.|..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 33334444455555555544444444444443321 12334555555555443
No 206
>PRK14147 heat shock protein GrpE; Provisional
Probab=22.14 E-value=5.7e+02 Score=23.52 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQL 122 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~ 122 (362)
.+..+|+.|+.+...|...+.|+.-+.+++..+++.
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~k 57 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLENQRKRIAR 57 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888877777777776666555443
No 207
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.06 E-value=2.9e+02 Score=24.97 Aligned_cols=43 Identities=30% Similarity=0.305 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
..+..+++.|.+....|..+|..+-+....+..+++.+..+..
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999999998888888888887776543
No 208
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=21.97 E-value=3.5e+02 Score=28.79 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
.|++.|+++...+..|++.++.+.+.+..+++.++.++.
T Consensus 274 ~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~ 312 (511)
T PF09787_consen 274 IELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLE 312 (511)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777776666666666665543
No 209
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.90 E-value=84 Score=33.69 Aligned_cols=16 Identities=44% Similarity=0.401 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLEL 106 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL 106 (362)
+|+.|+++++.|.+++
T Consensus 32 kie~L~kql~~Lk~q~ 47 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQ 47 (489)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333333333333333
No 210
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.80 E-value=59 Score=33.51 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.1
Q ss_pred CcchHHHHHhhhcCCCCCchHHHhhhhhhccCc
Q 018006 295 GVNDVFWEQFLTENPGSSDAQEVQSERKECDGK 327 (362)
Q Consensus 295 g~ND~FWeqfLte~pgs~~~~e~~se~~d~~~~ 327 (362)
++-|.||++|....=---+-|||..|-|+.+|.
T Consensus 205 a~~D~~~qr~~~~k~lkMtKqEVKdE~K~sEGd 237 (363)
T COG1377 205 AAFDYFYQRFQYIKKLKMTKQEVKDEYKQSEGD 237 (363)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHhhccCC
Confidence 789999999999988888899999999997653
No 211
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.78 E-value=4e+02 Score=22.88 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
-+..|+.....+..+|.+++.+. ..+++++..++...+.|+
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~-------~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQE-------KKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544443 344444444444444444
No 212
>PRK08724 fliD flagellar capping protein; Validated
Probab=21.59 E-value=3.5e+02 Score=30.34 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=7.4
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLEL 106 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL 106 (362)
+..+|.+|..++..|...|
T Consensus 622 L~~~i~~l~dqi~~Le~Rl 640 (673)
T PRK08724 622 LREQNYRLNDDQVALDRRM 640 (673)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444333333333
No 213
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.47 E-value=5.1e+02 Score=21.97 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018006 97 KEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR 133 (362)
Q Consensus 97 ~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~ 133 (362)
+-+..|...+..++...+.+..++..++..+...+..
T Consensus 73 ~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 109 (118)
T PF13815_consen 73 HCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544444433
No 214
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.39 E-value=4.5e+02 Score=26.63 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 018006 88 LKDDIERLKKEKEILLLELQRHE------------------QERQGFESQMQLLRERF----QLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlr------------------qqqq~l~~qvq~L~ERL----~~~E~~QqqmlsFL~~vl 145 (362)
+..++..|+.++..|..|..+|+ ++......||..|.+-| ..+...|..|.+.+++++
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666665555 12222233444444433 344557788888888877
Q ss_pred c
Q 018006 146 Q 146 (362)
Q Consensus 146 q 146 (362)
.
T Consensus 245 d 245 (306)
T PF04849_consen 245 D 245 (306)
T ss_pred H
Confidence 5
No 215
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=21.33 E-value=4.9e+02 Score=28.62 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcCC
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR------QQKMVSFVGRALQKP 148 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~------QqqmlsFL~~vlq~p 148 (362)
-..+++.|+.....|..++..++.+...+...+..+.+.+..++.. +-.+..-+..++.++
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~ 392 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDA 392 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3455666666666666666666666666666666565555444332 234455555667776
No 216
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=21.23 E-value=1.4e+02 Score=22.63 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=18.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHE 110 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlr 110 (362)
.+...+|..|..++..|.++|.+++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888888777654
No 217
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=21.22 E-value=1.6e+02 Score=25.98 Aligned_cols=77 Identities=16% Similarity=0.362 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcccccccccc
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQ----MQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHD 162 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~q----vq~L~ERL~~~E~~QqqmlsFL~~vlq~pgfl~~L~q~~~~~~ 162 (362)
.+..++..++.+...|..++....+.++.++.= |..|.+++..|++. ++|+..|.. .| --+.++.....+
T Consensus 10 ~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~-Kelle~Lk~---q~--d~~iip~~~~~~ 83 (121)
T PF03310_consen 10 ELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECN-KELLEALKK---QP--DKQIIPSPEEDS 83 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTH-HHHHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhh-HHHHHHHhc---CC--CCCcCCCCCCCC
Confidence 345555555555555555555444444444433 55667777777765 334433322 11 112333333336
Q ss_pred CCCCCCC
Q 018006 163 RKRRLPR 169 (362)
Q Consensus 163 kKRRlp~ 169 (362)
+++++++
T Consensus 84 ~~~~~~k 90 (121)
T PF03310_consen 84 KGSSLQK 90 (121)
T ss_dssp -------
T ss_pred CCCCCcc
Confidence 6676665
No 218
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.90 E-value=2.2e+02 Score=23.20 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFE 117 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~ 117 (362)
..++..|+..+..|..++.+++.+...++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 97 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALE 97 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444444333
No 219
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.86 E-value=1.4e+02 Score=24.27 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHE 110 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlr 110 (362)
..+..+||.++..|.+||+.++
T Consensus 6 ~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 6 QEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554433
No 220
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.79 E-value=4.9e+02 Score=25.72 Aligned_cols=34 Identities=29% Similarity=0.591 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 94 RLKKEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 94 ~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
.++.....+..++..++.+...++.++..+++++
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444433
No 221
>PF15456 Uds1: Up-regulated During Septation
Probab=20.57 E-value=4.5e+02 Score=23.00 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
.+|++.||++...|. .+|..++..|. .|.+...-..-|++.+.
T Consensus 21 ~eEVe~LKkEl~~L~--------------~R~~~lr~kl~-le~k~RdAa~sl~~l~~ 63 (124)
T PF15456_consen 21 FEEVEELKKELRSLD--------------SRLEYLRRKLA-LESKIRDAAHSLSRLYS 63 (124)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence 345666666555554 44555555554 44454444444555443
No 222
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.52 E-value=5e+02 Score=21.53 Aligned_cols=55 Identities=16% Similarity=0.347 Sum_probs=29.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 84 ERQGLKDDIERLKKEKEILLLEL----------QRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 84 e~~~l~~eIe~LK~d~~~L~~EL----------~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
|..++++.|.+.+++...+...| ..++.+...+..++...+++|..+++..++.+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK~~ 70 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRKSM 70 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhhhH
Confidence 34456667777766666665555 22334444444445555555555555444433
No 223
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.47 E-value=4e+02 Score=26.88 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 119 QMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 119 qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
+-..|++|+..+|+.++-|=.++.-++.
T Consensus 263 rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 263 RNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666665555544
No 224
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=20.41 E-value=4.9e+02 Score=27.51 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHH
Q 018006 115 GFESQMQLLRERF 127 (362)
Q Consensus 115 ~l~~qvq~L~ERL 127 (362)
++++++..|+||+
T Consensus 328 nLKqElasmeerv 340 (455)
T KOG3850|consen 328 NLKQELASMEERV 340 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 225
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.26 E-value=3.5e+02 Score=22.29 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRER---FQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ER---L~~~E~~QqqmlsFL~~ 143 (362)
++..|..-+..|..|..+..+++-.+...+..|.-. |...-.++..++.-|..
T Consensus 25 ~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 25 ELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444445555555555555555554444444432 33444455555554444
No 226
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=20.17 E-value=6.3e+02 Score=25.54 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=32.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
+.+....++|.+.+..|..||+.-+.+-..++-|+...+.+|..+++..+.+-+-|.+.
T Consensus 70 q~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 70 QSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555556666666666655555553
No 227
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=20.00 E-value=2.2e+02 Score=28.43 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFE-SQMQLLRERFQLMEQRQQKMVSFVGRALQK 147 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~-~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~ 147 (362)
...+|..+++++..+..||+.++.+..... .+...|.++.+.++ .|.+-|..|+++
T Consensus 52 ~L~QIt~iQaeI~q~nlEielLkleKeTADltH~~~L~~K~~~Lq----~m~shLe~VLk~ 108 (277)
T PF15003_consen 52 RLRQITNIQAEIDQLNLEIELLKLEKETADLTHPDYLAEKCEALQ----SMNSHLEAVLKE 108 (277)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcchHhhhCHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 356788888888888888888777766544 34445555543332 444555555553
Done!