Query 018006
Match_columns 362
No_of_seqs 236 out of 940
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ldu_A Heat shock factor prote 99.9 6.6E-26 2.3E-30 194.5 3.4 65 1-65 48-123 (125)
2 1hks_A Heat-shock transcriptio 99.9 5.7E-26 1.9E-30 189.4 2.4 62 1-62 35-106 (106)
3 3hts_B Heat shock transcriptio 99.7 2.9E-19 9.9E-24 148.6 1.4 47 1-47 43-100 (102)
4 2jee_A YIIU; FTSZ, septum, coi 87.2 4 0.00014 32.3 8.9 51 89-139 26-76 (81)
5 3he5_B Synzip2; heterodimeric 79.9 5 0.00017 28.4 5.9 38 88-125 8-45 (52)
6 3hnw_A Uncharacterized protein 75.8 13 0.00043 31.8 8.6 52 87-138 79-130 (138)
7 1deb_A APC protein, adenomatou 74.7 14 0.00049 26.8 7.2 44 87-130 7-50 (54)
8 2jee_A YIIU; FTSZ, septum, coi 71.7 35 0.0012 26.9 9.4 54 88-141 11-71 (81)
9 3hnw_A Uncharacterized protein 70.7 14 0.00048 31.5 7.6 49 90-138 75-123 (138)
10 2xu6_A MDV1 coiled coil; prote 70.0 4.9 0.00017 31.2 4.1 51 81-131 19-69 (72)
11 3q8t_A Beclin-1; autophagy, AT 67.9 26 0.00089 28.0 8.3 48 85-132 6-53 (96)
12 4dzn_A Coiled-coil peptide CC- 66.4 6.8 0.00023 25.4 3.5 23 88-110 7-29 (33)
13 1wt6_A Myotonin-protein kinase 66.1 19 0.00066 28.4 6.8 40 88-127 29-68 (81)
14 3tnu_B Keratin, type II cytosk 65.6 41 0.0014 27.8 9.4 41 88-128 34-74 (129)
15 3cve_A Homer protein homolog 1 65.2 26 0.00089 27.0 7.3 36 104-139 7-42 (72)
16 3a7p_A Autophagy protein 16; c 64.8 36 0.0012 29.8 9.0 34 106-139 98-131 (152)
17 2wt7_B Transcription factor MA 64.7 14 0.00048 29.7 5.9 41 89-129 47-87 (90)
18 2yy0_A C-MYC-binding protein; 64.4 13 0.00045 26.9 5.2 27 90-116 19-45 (53)
19 1t2k_D Cyclic-AMP-dependent tr 60.4 14 0.00049 26.9 4.9 28 88-115 27-54 (61)
20 1g6u_A Domain swapped dimer; d 59.5 20 0.0007 24.9 5.2 8 89-96 6-13 (48)
21 2wt7_A Proto-oncogene protein 58.4 21 0.00073 26.2 5.6 26 88-113 28-53 (63)
22 3tnu_A Keratin, type I cytoske 58.2 39 0.0013 28.1 7.9 39 89-127 37-75 (131)
23 1a93_B MAX protein, coiled coi 57.3 15 0.00053 24.5 4.1 28 96-123 6-33 (34)
24 3i00_A HIP-I, huntingtin-inter 57.2 29 0.00098 29.1 6.9 39 89-130 14-52 (120)
25 4etp_A Kinesin-like protein KA 57.1 31 0.001 34.1 8.2 53 92-144 5-57 (403)
26 2w83_C C-JUN-amino-terminal ki 56.8 12 0.00042 29.2 4.2 39 87-125 34-72 (77)
27 3na7_A HP0958; flagellar bioge 56.4 41 0.0014 30.8 8.5 8 214-221 179-186 (256)
28 4dzn_A Coiled-coil peptide CC- 56.2 24 0.00082 22.8 4.7 21 91-111 3-23 (33)
29 3uux_B Mitochondrial division 55.9 18 0.00061 33.9 5.9 27 118-144 177-203 (242)
30 3oja_B Anopheles plasmodium-re 55.0 42 0.0014 33.5 9.0 25 89-113 508-532 (597)
31 2v66_B Nuclear distribution pr 54.9 79 0.0027 26.2 9.1 45 99-143 37-81 (111)
32 2yy0_A C-MYC-binding protein; 54.4 23 0.00079 25.6 5.1 30 83-112 19-48 (53)
33 3e98_A GAF domain of unknown f 54.0 31 0.001 32.0 7.2 21 41-61 39-59 (252)
34 3q0x_A Centriole protein; cent 52.9 45 0.0015 30.9 8.0 53 85-137 166-218 (228)
35 2xdj_A Uncharacterized protein 52.0 83 0.0029 24.6 8.8 47 99-145 22-68 (83)
36 3efg_A Protein SLYX homolog; x 50.7 26 0.00089 27.1 5.2 43 89-131 20-62 (78)
37 1kd8_B GABH BLL, GCN4 acid bas 49.9 21 0.00071 24.1 3.8 26 87-112 5-30 (36)
38 1ci6_A Transcription factor AT 47.8 27 0.00092 25.8 4.7 26 88-113 28-53 (63)
39 1jnm_A Proto-oncogene C-JUN; B 47.6 14 0.00048 27.1 3.0 28 88-115 27-54 (62)
40 1nkp_B MAX protein, MYC proto- 46.2 22 0.00074 27.3 4.1 32 90-121 47-78 (83)
41 4etp_A Kinesin-like protein KA 45.9 52 0.0018 32.5 7.8 53 86-138 6-58 (403)
42 2xdj_A Uncharacterized protein 45.7 1.1E+02 0.0036 24.0 8.5 59 88-146 4-62 (83)
43 3oja_B Anopheles plasmodium-re 45.1 49 0.0017 33.1 7.6 55 91-145 524-578 (597)
44 3m48_A General control protein 44.7 29 0.00099 23.0 3.8 25 87-111 4-28 (33)
45 1wle_A Seryl-tRNA synthetase; 44.5 82 0.0028 32.2 9.2 63 83-145 77-150 (501)
46 1nkp_A C-MYC, MYC proto-oncoge 43.9 32 0.0011 27.0 4.8 35 89-123 51-85 (88)
47 1lwu_C Fibrinogen gamma chain; 43.7 51 0.0017 32.0 7.2 10 216-225 130-139 (323)
48 2akf_A Coronin-1A; coiled coil 43.5 55 0.0019 21.2 4.9 26 109-134 4-29 (32)
49 4emc_A Monopolin complex subun 43.1 75 0.0026 28.7 7.6 56 91-146 21-79 (190)
50 3u06_A Protein claret segregat 43.0 61 0.0021 32.2 7.8 54 84-144 4-57 (412)
51 2wq1_A General control protein 42.8 32 0.0011 22.8 3.8 25 87-111 4-28 (33)
52 2v71_A Nuclear distribution pr 40.1 1.4E+02 0.0049 26.8 9.1 28 104-131 95-122 (189)
53 3c3g_A Alpha/beta peptide with 39.3 39 0.0013 22.4 3.8 25 87-111 4-28 (33)
54 2dq0_A Seryl-tRNA synthetase; 38.9 67 0.0023 32.2 7.5 64 82-145 37-103 (455)
55 3swy_A Cyclic nucleotide-gated 38.9 1E+02 0.0034 21.8 7.0 42 88-132 3-44 (46)
56 1hjb_A Ccaat/enhancer binding 38.8 43 0.0015 26.5 4.8 27 101-127 40-66 (87)
57 1kd8_A GABH AIV, GCN4 acid bas 38.2 63 0.0022 21.8 4.8 26 87-112 5-30 (36)
58 1jcd_A Major outer membrane li 37.8 1.1E+02 0.0038 22.0 7.4 43 91-133 5-47 (52)
59 3swf_A CGMP-gated cation chann 37.4 1.4E+02 0.0049 23.1 8.1 48 87-137 4-51 (74)
60 2v66_B Nuclear distribution pr 37.4 1.7E+02 0.0057 24.2 8.4 52 87-138 39-90 (111)
61 3he4_A Synzip6; heterodimeric 37.1 65 0.0022 23.0 5.0 34 85-118 19-52 (56)
62 3c3f_A Alpha/beta peptide with 36.9 45 0.0015 22.2 3.8 25 87-111 5-29 (34)
63 2hy6_A General control protein 36.5 46 0.0016 22.2 3.8 25 87-111 5-29 (34)
64 1lwu_C Fibrinogen gamma chain; 36.1 89 0.0031 30.2 7.6 23 88-110 10-32 (323)
65 1uo4_A General control protein 36.1 47 0.0016 22.2 3.8 25 87-111 5-29 (34)
66 3ra3_B P2F; coiled coil domain 35.0 31 0.0011 21.6 2.7 13 94-106 4-16 (28)
67 3qne_A Seryl-tRNA synthetase, 34.3 1.1E+02 0.0037 31.2 8.2 71 83-153 40-114 (485)
68 2r2v_A GCN4 leucine zipper; co 34.1 53 0.0018 21.9 3.8 23 88-110 6-28 (34)
69 4e61_A Protein BIM1; EB1-like 34.1 1.8E+02 0.0061 23.9 8.0 13 119-131 26-38 (106)
70 2bni_A General control protein 33.9 54 0.0018 21.9 3.8 25 87-111 5-29 (34)
71 1wlq_A Geminin; coiled-coil; 2 33.8 1.2E+02 0.004 24.0 6.5 26 89-114 37-62 (83)
72 3a2a_A Voltage-gated hydrogen 33.8 1.2E+02 0.004 22.4 6.0 28 89-116 10-37 (58)
73 3s4r_A Vimentin; alpha-helix, 33.8 80 0.0027 25.0 5.7 54 87-140 20-78 (93)
74 1ses_A Seryl-tRNA synthetase; 33.6 65 0.0022 31.9 6.3 71 83-153 35-107 (421)
75 1nlw_A MAD protein, MAX dimeri 33.6 52 0.0018 25.4 4.5 31 90-120 47-77 (80)
76 2zqm_A Prefoldin beta subunit 32.7 1.4E+02 0.0047 23.5 7.1 41 88-128 68-108 (117)
77 3u06_A Protein claret segregat 31.8 1.4E+02 0.0048 29.5 8.4 34 100-133 6-39 (412)
78 1use_A VAsp, vasodilator-stimu 31.7 63 0.0021 22.8 4.1 24 90-113 7-31 (45)
79 3efg_A Protein SLYX homolog; x 31.6 1.2E+02 0.004 23.4 6.2 42 87-128 11-52 (78)
80 3m91_A Proteasome-associated A 31.3 1.2E+02 0.0042 21.7 5.8 34 87-120 13-46 (51)
81 3s9g_A Protein hexim1; cyclin 30.9 2.2E+02 0.0075 23.3 8.0 52 87-138 34-85 (104)
82 1ci6_A Transcription factor AT 30.8 1.4E+02 0.0048 21.8 6.3 29 99-127 25-53 (63)
83 1t2k_D Cyclic-AMP-dependent tr 30.7 1.5E+02 0.0051 21.3 6.4 30 99-128 24-53 (61)
84 1gmj_A ATPase inhibitor; coile 30.7 2E+02 0.0068 22.7 7.5 38 93-130 40-77 (84)
85 3uux_B Mitochondrial division 30.1 1.9E+02 0.0064 27.1 8.3 49 89-137 162-210 (242)
86 3mtu_A Tropomyosin alpha-1 cha 29.7 1.3E+02 0.0043 23.0 6.0 45 87-131 6-50 (75)
87 2wvr_A Geminin; DNA replicatio 29.4 1.7E+02 0.0059 26.7 7.7 12 135-146 149-160 (209)
88 2oxj_A Hybrid alpha/beta pepti 29.0 73 0.0025 21.2 3.8 24 87-110 5-28 (34)
89 3viq_B Mating-type switching p 28.9 2.2E+02 0.0074 22.6 8.3 58 86-144 4-67 (85)
90 3oja_A Leucine-rich immune mol 28.6 1.7E+02 0.0057 28.6 8.3 15 111-125 435-449 (487)
91 2dgc_A Protein (GCN4); basic d 28.5 46 0.0016 24.6 3.2 29 99-127 32-60 (63)
92 2fcw_A Alpha-2-macroglobulin r 28.3 2.5E+02 0.0086 23.2 8.8 22 125-146 74-95 (109)
93 2aze_A Transcription factor DP 28.0 1.7E+02 0.006 25.5 7.3 36 89-124 4-39 (155)
94 1uii_A Geminin; human, DNA rep 28.0 1.6E+02 0.0054 23.3 6.4 23 91-113 47-69 (83)
95 1deq_A Fibrinogen (alpha chain 27.9 1.8E+02 0.0062 28.9 8.2 42 87-128 117-158 (390)
96 3a7p_A Autophagy protein 16; c 27.4 2.5E+02 0.0087 24.4 8.2 50 89-138 67-123 (152)
97 2aze_B Transcription factor E2 26.7 1E+02 0.0035 25.0 5.3 23 89-111 5-27 (106)
98 1l8d_A DNA double-strand break 26.5 1.5E+02 0.0051 23.3 6.2 35 91-125 4-38 (112)
99 1joc_A EEA1, early endosomal a 26.4 1.5E+02 0.005 24.5 6.4 7 100-106 21-27 (125)
100 2w6a_A ARF GTPase-activating p 26.0 1.9E+02 0.0065 21.6 6.1 36 89-124 26-61 (63)
101 1fxk_A Prefoldin; archaeal pro 25.5 1.5E+02 0.0052 22.9 6.1 41 88-128 63-103 (107)
102 3a7o_A Autophagy protein 16; c 25.5 1.8E+02 0.006 22.5 6.0 8 91-98 19-26 (75)
103 3kqg_A Langerin, C-type lectin 25.2 96 0.0033 25.8 5.2 15 88-102 4-18 (182)
104 3a2a_A Voltage-gated hydrogen 24.7 2.1E+02 0.0072 21.0 6.6 36 104-139 11-46 (58)
105 2dgc_A Protein (GCN4); basic d 24.4 1E+02 0.0035 22.7 4.5 23 88-110 35-57 (63)
106 1go4_E MAD1 (mitotic arrest de 24.2 1.2E+02 0.0041 24.6 5.2 31 90-120 12-42 (100)
107 3lss_A Seryl-tRNA synthetase; 24.2 2.3E+02 0.0077 28.9 8.4 74 82-155 43-149 (484)
108 4emc_A Monopolin complex subun 24.1 3.9E+02 0.013 24.0 9.0 55 86-140 23-77 (190)
109 4h22_A Leucine-rich repeat fli 23.7 2.2E+02 0.0074 23.3 6.6 41 88-128 42-82 (103)
110 1x79_B RAB GTPase binding effe 23.6 3.1E+02 0.011 22.6 8.9 48 87-137 17-64 (112)
111 3m9b_A Proteasome-associated A 23.5 93 0.0032 29.2 5.0 28 123-150 73-100 (251)
112 1hjb_A Ccaat/enhancer binding 23.5 2.4E+02 0.0083 22.1 6.8 23 89-111 42-64 (87)
113 1avy_A Fibritin, gpwac M; bact 23.3 1.3E+02 0.0046 23.1 5.0 37 87-123 5-41 (74)
114 2oqq_A Transcription factor HY 23.2 1.9E+02 0.0064 20.1 5.2 22 91-112 11-32 (42)
115 1gd2_E Transcription factor PA 23.0 1.5E+02 0.0052 22.4 5.3 35 92-126 31-65 (70)
116 3tnu_A Keratin, type I cytoske 22.2 3.3E+02 0.011 22.3 8.5 27 86-112 48-74 (131)
117 1fzc_C Fibrin; blood coagulati 21.8 56 0.0019 31.6 3.3 15 211-225 113-130 (319)
118 3o0z_A RHO-associated protein 21.3 3.3E+02 0.011 24.0 7.9 42 93-134 93-134 (168)
119 1uix_A RHO-associated kinase; 21.2 2.8E+02 0.0096 21.2 9.5 27 88-114 2-28 (71)
120 1fxk_C Protein (prefoldin); ar 21.0 3.3E+02 0.011 21.9 7.5 41 88-128 86-126 (133)
121 1t6f_A Geminin; coiled-coil, c 20.7 1.9E+02 0.0066 19.4 4.7 28 89-116 6-33 (37)
122 3vmx_A Voltage-gated hydrogen 20.6 2.4E+02 0.0081 20.1 6.9 22 89-110 3-24 (48)
123 2b3g_B Cellular tumor antigen 20.5 29 0.00099 21.9 0.6 10 302-311 19-28 (28)
124 1m1j_C Fibrinogen gamma chain; 20.5 3.4E+02 0.012 27.0 8.7 41 105-145 92-132 (409)
125 1gu4_A CAAT/enhancer binding p 20.4 65 0.0022 25.0 2.8 38 86-123 39-76 (78)
126 3m91_A Proteasome-associated A 20.2 2.4E+02 0.0083 20.1 7.1 41 89-129 8-48 (51)
127 3tnu_B Keratin, type II cytosk 20.1 3.6E+02 0.012 22.0 7.7 27 86-112 46-72 (129)
No 1
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.91 E-value=6.6e-26 Score=194.47 Aligned_cols=65 Identities=52% Similarity=0.873 Sum_probs=61.5
Q ss_pred CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC-----------CCcceEeCCCcCcCCccccccccccCCC
Q 018006 1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-----------PEQWEFANEDFVRGQPERLKNIHRRKPV 65 (362)
Q Consensus 1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~-----------~~~~eF~h~~F~Rg~p~LL~~IkRrk~~ 65 (362)
|||+.+|+++|||+||||+||+|||||||+|||+|+. ++.|+|+||+|+||+|+||.+|+||++.
T Consensus 48 V~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~ 123 (125)
T 2ldu_A 48 VFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS 123 (125)
T ss_dssp ECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred EeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence 7999999999999999999999999999999999983 4679999999999999999999998875
No 2
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=99.91 E-value=5.7e-26 Score=189.42 Aligned_cols=62 Identities=45% Similarity=0.816 Sum_probs=59.4
Q ss_pred CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC----------CCcceEeCCCcCcCCcccccccccc
Q 018006 1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD----------PEQWEFANEDFVRGQPERLKNIHRR 62 (362)
Q Consensus 1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~----------~~~~eF~h~~F~Rg~p~LL~~IkRr 62 (362)
|||+.+|+++|||+||||+||+|||||||+|||+|+. ++.|+|+||+|+||+|+||.+|+||
T Consensus 35 I~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~~~ef~h~~F~Rg~~~LL~~IkRk 106 (106)
T 1hks_A 35 IQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106 (106)
T ss_dssp CSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred ECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCCceEEECcCccCcCHHHHhhCcCC
Confidence 7999999999999999999999999999999999995 4679999999999999999999996
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.73 E-value=2.9e-19 Score=148.57 Aligned_cols=47 Identities=53% Similarity=1.092 Sum_probs=44.9
Q ss_pred CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC-----------CCcceEeCCC
Q 018006 1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-----------PEQWEFANED 47 (362)
Q Consensus 1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~-----------~~~~eF~h~~ 47 (362)
|||+.+|+++|||+||||+||+||+||||+|||+|+. +++|||.|++
T Consensus 43 I~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~~~~~wEF~n~~ 100 (102)
T 3hts_B 43 VPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER 100 (102)
T ss_dssp ESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------CCSCCEEEEECC
T ss_pred EcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCCCcCCeEecCCC
Confidence 7899999999999999999999999999999999997 6789999986
No 4
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.21 E-value=4 Score=32.30 Aligned_cols=51 Identities=25% Similarity=0.386 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 139 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqmls 139 (362)
.-+|+.||..+..|..+.+.++.....+..+.+.|++....-+.+.+.|+.
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777766666665555555666666666655544444444443
No 5
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.86 E-value=5 Score=28.38 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~E 125 (362)
+...|.+||+|+-.|..+-+.++.-..++..++..|+.
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 56789999999888877666665555555544444443
No 6
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.83 E-value=13 Score=31.83 Aligned_cols=52 Identities=21% Similarity=0.179 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
.+..+++.+.++.+.|..||..++.+...+..++..+++++..++.+..++-
T Consensus 79 ~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 79 SLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666666666666666666665555443
No 7
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=74.68 E-value=14 Score=26.78 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
.+..+++.||.++..|..||..-..+...++.+...|++-+..+
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 35678899999999999999888888777888877777765443
No 8
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.69 E-value=35 Score=26.94 Aligned_cols=54 Identities=11% Similarity=0.241 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQL-------LRERFQLMEQRQQKMVSFV 141 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~-------L~ERL~~~E~~QqqmlsFL 141 (362)
++.+|..+=..+..|..|+..|++++..+..+.+. |......+.+.+...=.-|
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666677777777788777777777776 5555555554443333333
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.75 E-value=14 Score=31.54 Aligned_cols=49 Identities=10% Similarity=0.008 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
.+++.|+.+...+..|+..++++...+..++..+...+.....+.+.+-
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444443333
No 10
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=70.03 E-value=4.9 Score=31.18 Aligned_cols=51 Identities=27% Similarity=0.460 Sum_probs=39.1
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018006 81 TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLME 131 (362)
Q Consensus 81 ~e~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E 131 (362)
+.+|-.++..+|++|+.-+..+...|+.++|+-..++..+..++.||.-++
T Consensus 19 a~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 19 TMSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999999999999999988888888888876554
No 11
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=67.95 E-value=26 Score=28.04 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=39.6
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 132 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~ 132 (362)
...+..++..|+.+-..|..||..+..+...+..++..++.....+..
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 355788899999999999999999999999999998888877665544
No 12
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=66.41 E-value=6.8 Score=25.41 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHE 110 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlr 110 (362)
+..+|..||++...|.-|+..++
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444444443
No 13
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=66.10 E-value=19 Score=28.42 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
+..++.+.+.++..+..+|...+..++.+..+|..+++++
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555554444
No 14
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.60 E-value=41 Score=27.84 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
...+|..|++....|..||..++-++..++..+..++.+..
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888887777777777777776654
No 15
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=65.25 E-value=26 Score=27.04 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 104 LELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 139 (362)
Q Consensus 104 ~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqmls 139 (362)
..|+.++..++.++.+|+.|+.+|.....+|..+-.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~ 42 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRS 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555444444433
No 16
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=64.76 E-value=36 Score=29.79 Aligned_cols=34 Identities=9% Similarity=0.191 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 106 LQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 139 (362)
Q Consensus 106 L~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqmls 139 (362)
++.++.+...+..|+..+++++..++...+.++.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777788888888877766664
No 17
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=64.67 E-value=14 Score=29.71 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 129 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~ 129 (362)
..++..|..++..|..++..|++++..+..++..++.+++.
T Consensus 47 ~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 47 VQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777888888887777777777777776643
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.43 E-value=13 Score=26.88 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGF 116 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l 116 (362)
.+++.|+.++..|..++..|..+.+.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667766666666665555554443
No 19
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.36 E-value=14 Score=26.90 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQG 115 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~ 115 (362)
++.+++.|..++..|..+|..|+.+...
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555544433
No 20
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=59.53 E-value=20 Score=24.90 Aligned_cols=8 Identities=38% Similarity=0.729 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 018006 89 KDDIERLK 96 (362)
Q Consensus 89 ~~eIe~LK 96 (362)
..++..||
T Consensus 6 kselqalk 13 (48)
T 1g6u_A 6 KSELQALK 13 (48)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.38 E-value=21 Score=26.24 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQER 113 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqq 113 (362)
+..+++.|+.++..|..+|..|+.+.
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444443
No 22
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.22 E-value=39 Score=28.14 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
..+|..|++....|..||..++-++..++..+..++.+.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445555566666666666665555555555555555543
No 23
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=57.34 E-value=15 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018006 96 KKEKEILLLELQRHEQERQGFESQMQLL 123 (362)
Q Consensus 96 K~d~~~L~~EL~rlrqqqq~l~~qvq~L 123 (362)
++.+.....++..++.++..++.|+..|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555655555555443
No 24
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.16 E-value=29 Score=29.09 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
+..|+.|+++...|..+|.++..+.+. .+..|+.|+..+
T Consensus 14 D~~Ie~Lkreie~lk~ele~l~~E~q~---~v~ql~~~i~~L 52 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENMKTESQR---VVLQLKGHVSEL 52 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 567889999999999999888776553 355555555444
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=57.08 E-value=31 Score=34.12 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
|+.|+.+...|..++..+++..+.++.++..+.+++...+..-+++-+-|..+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444455555555555555666667777766666656665555543
No 26
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=56.80 E-value=12 Score=29.24 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~E 125 (362)
.+..+++.|-.++..|..||..+++-...++.++..|++
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEe 72 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEE 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544444444443333
No 27
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.36 E-value=41 Score=30.80 Aligned_cols=8 Identities=38% Similarity=0.833 Sum_probs=4.6
Q ss_pred HHHHHHHH
Q 018006 214 TFWENIVQ 221 (362)
Q Consensus 214 ~~~E~~~~ 221 (362)
.++|.+..
T Consensus 179 ~~Yerir~ 186 (256)
T 3na7_A 179 SFYERIRR 186 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55566654
No 28
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=56.17 E-value=24 Score=22.85 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrq 111 (362)
+|..||++...|..|+..++=
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777766665543
No 29
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=55.94 E-value=18 Score=33.91 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 118 SQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 118 ~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
.++..+--+|+.++..++.++.-|+.+
T Consensus 177 sEI~EID~KI~~L~~mR~~vl~RLA~l 203 (242)
T 3uux_B 177 SEIRDIEVEVENLRQKKEKLLGKIANI 203 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=55.00 E-value=42 Score=33.55 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQER 113 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqq 113 (362)
..++..++.+.+.+..++++++++.
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 3344444444455555555544444
No 31
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.94 E-value=79 Score=26.18 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 99 KEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR 143 (362)
Q Consensus 99 ~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~ 143 (362)
...|..||..++..+..+...+..|+......|..-....+.|..
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 344566666666666666666666666666666555555544443
No 32
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.40 E-value=23 Score=25.56 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=18.5
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 83 SERQGLKDDIERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 83 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqq 112 (362)
++...+..|++.|+.....|..++..++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666666554
No 33
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=54.04 E-value=31 Score=31.96 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=0.0
Q ss_pred ceEeCCCcCcCCccccccccc
Q 018006 41 WEFANEDFVRGQPERLKNIHR 61 (362)
Q Consensus 41 ~eF~h~~F~Rg~p~LL~~IkR 61 (362)
|--.||.|.-.+|+||..|+=
T Consensus 39 yL~~~PdFf~~~~~Ll~~L~l 59 (252)
T 3e98_A 39 YLSQHPEFFVEHDELIPELRI 59 (252)
T ss_dssp ---------------------
T ss_pred HHHhCCHHHhhCHHHHHhCCC
Confidence 334899999999999998864
No 34
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=52.85 E-value=45 Score=30.89 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=43.8
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 137 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqm 137 (362)
+.-+-.++..+|..+..|...|++.+.++..+..++...+..+.....+-.+.
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44567789999999999999999999999999999888888887776665544
No 35
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.03 E-value=83 Score=24.60 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 99 KEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 99 ~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
+..|...|..++++...+.-++..+.-.|..+.++|+.+..=|-+.+
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl 68 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666677776665554433
No 36
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=50.67 E-value=26 Score=27.14 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLME 131 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E 131 (362)
+.++.-+..-...|...|.++.++...+..++..|.+|+..++
T Consensus 20 E~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 20 ETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334434445556666666666666666666666666655443
No 37
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=49.90 E-value=21 Score=24.11 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqq 112 (362)
.++++++.|...+..|..|+.||+.-
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 36788888988888888888887753
No 38
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.79 E-value=27 Score=25.81 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=13.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQER 113 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqq 113 (362)
+..+++.|+.++..|..++..|+.+.
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444443
No 39
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=47.56 E-value=14 Score=27.09 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=15.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQG 115 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~ 115 (362)
++.+++.|..++..|..++..|+.+...
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666555555554443
No 40
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=46.19 E-value=22 Score=27.26 Aligned_cols=32 Identities=9% Similarity=0.258 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQMQ 121 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq 121 (362)
.-|..|+.....|..|+..|++++..+..++.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666555554444
No 41
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.89 E-value=52 Score=32.46 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=37.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
..+..+|+.|+++...|..++..++.+.+.+..++...+..-..++...+.|-
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34677788888888888888888888877777776666655555666555553
No 42
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=45.67 E-value=1.1e+02 Score=23.98 Aligned_cols=59 Identities=17% Similarity=0.185 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq 146 (362)
++.++.+|.+-......-+..|..+...+..+|..|+-.++.......+|..-....+.
T Consensus 4 ~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 4 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666654433334445566677777777888887777777777777665555554
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.11 E-value=49 Score=33.08 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
++.+++++...+..++..++++...++.++...++++..+.+....+..-+.++.
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555555544444444444433
No 44
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=44.72 E-value=29 Score=23.04 Aligned_cols=25 Identities=24% Similarity=0.233 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
.++++++.|-.++..|..|+.||+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3678888888888889888888763
No 45
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=44.50 E-value=82 Score=32.15 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=48.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 83 SERQGLKDDIERLKKEKEILLLELQRHEQ-----------ERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 83 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrq-----------qqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
.++..+..+++.|+.++..+..+|..++. +...+..++..|+++|..++.....+-.-|..++
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999999999876553 2346677888888899888888877777665544
No 46
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.91 E-value=32 Score=26.99 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLL 123 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L 123 (362)
.+-|..|+.....|..++..++++++.+..+++.|
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777777777777766666665554
No 47
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=43.68 E-value=51 Score=31.95 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=7.1
Q ss_pred HHHHHHhhhh
Q 018006 216 WENIVQDVGQ 225 (362)
Q Consensus 216 ~E~~~~~~~~ 225 (362)
|+++-.+.|.
T Consensus 130 W~~Yk~GFG~ 139 (323)
T 1lwu_C 130 WVSYREGFGY 139 (323)
T ss_dssp HHHHHHCEEE
T ss_pred HHHHhhhhCC
Confidence 7887777664
No 48
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=43.45 E-value=55 Score=21.22 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=15.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018006 109 HEQERQGFESQMQLLRERFQLMEQRQ 134 (362)
Q Consensus 109 lrqqqq~l~~qvq~L~ERL~~~E~~Q 134 (362)
|+++...+..-+|.|.+|+.++|..-
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555667777777776643
No 49
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=43.12 E-value=75 Score=28.72 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ---RQQKMVSFVGRALQ 146 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~---~QqqmlsFL~~vlq 146 (362)
-|..|.+++..|..+|....++...+..|++.++++....+. ++..-+.+.-.++.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e 79 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYE 79 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHH
Confidence 467777777777777777777777777777777766543322 33344444444443
No 50
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=43.04 E-value=61 Score=32.17 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=30.2
Q ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 84 ERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 84 e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
|+..|+.++..|+.....|..++.+++. ++..++++|...+..-+++-.-|..+
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~-------~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAA-------ELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666555555444 44455555555555555555555443
No 51
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.80 E-value=32 Score=22.78 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
.++++++.|-..+..|..|+.|++.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3678888888888889888888763
No 52
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=40.12 E-value=1.4e+02 Score=26.75 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018006 104 LELQRHEQERQGFESQMQLLRERFQLME 131 (362)
Q Consensus 104 ~EL~rlrqqqq~l~~qvq~L~ERL~~~E 131 (362)
.||..++..+..+..++..|+.....+|
T Consensus 95 ~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333333333333333333333333333
No 53
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=39.35 E-value=39 Score=22.36 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
.++++++.|=..+..|..|+.||+.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3677888888888888888888763
No 54
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=38.93 E-value=67 Score=32.23 Aligned_cols=64 Identities=14% Similarity=0.282 Sum_probs=47.8
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 82 ESERQGLKDDIERLKKEKEILLLELQRHEQE---RQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 82 e~e~~~l~~eIe~LK~d~~~L~~EL~rlrqq---qq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
+.++..+..+++.|+.++..+..++..++.. ...+..++..|++++..++.....+-.-|..++
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999998765432 345667788888888888888777776666654
No 55
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=38.89 E-value=1e+02 Score=21.77 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQ 132 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~ 132 (362)
+++.+++|......|...+.||=-++... -+.|+.|+..+|.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ss---q~KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNAT---QMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 57788888888888888888876665433 3456677776665
No 56
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.76 E-value=43 Score=26.53 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 101 ILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 101 ~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
.+..++..|++++..|..+|..|+..+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554443
No 57
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=38.24 E-value=63 Score=21.77 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqq 112 (362)
.++++++.|-..+..|..|+.||+.-
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 36788888888888888888887754
No 58
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=37.76 E-value=1.1e+02 Score=21.99 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQR 133 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~ 133 (362)
+|+.|..+...|...+..|..+...+...++..++.-.+..+|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~R 47 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQR 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555544444444
No 59
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=37.41 E-value=1.4e+02 Score=23.06 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 137 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqm 137 (362)
.++..+++|......|...+.||=-++... -+.|+.||..+|.+-..+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccc
Confidence 367889999999999998888876665443 345677887777765543
No 60
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=37.37 E-value=1.7e+02 Score=24.20 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
.+..+|..|+..+..|...|..|+|.+-.++.+-.....-|..+|.+-.+.+
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677777777777777777777777777777665555555555555544443
No 61
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.11 E-value=65 Score=23.01 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=22.8
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018006 85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFES 118 (362)
Q Consensus 85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~ 118 (362)
...++.-+.+|..|+..|..++..++....+++.
T Consensus 19 naklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 19 NAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777766665543
No 62
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.95 E-value=45 Score=22.21 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
.++++++.|=..+..|..|+.||+.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3677888888888888888888763
No 63
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=36.46 E-value=46 Score=22.18 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
.+++.++.|-..+..|..|+.||+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3678888888888899888888763
No 64
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=36.14 E-value=89 Score=30.21 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=9.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHE 110 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlr 110 (362)
|.++|.+|+........+|..|+
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~ 32 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELS 32 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHH
Confidence 34444444433333333333333
No 65
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=36.09 E-value=47 Score=22.15 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
.++++++.|=..+..|..|+.||+.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3677888888888888888888763
No 66
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=34.98 E-value=31 Score=21.56 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 018006 94 RLKKEKEILLLEL 106 (362)
Q Consensus 94 ~LK~d~~~L~~EL 106 (362)
+||+.+..|..|+
T Consensus 4 rlkqknarlkqei 16 (28)
T 3ra3_B 4 RLKQKNARLKQEI 16 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHH
Confidence 3444444443333
No 67
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=34.27 E-value=1.1e+02 Score=31.24 Aligned_cols=71 Identities=10% Similarity=0.113 Sum_probs=49.6
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchhc
Q 018006 83 SERQGLKDDIERLKKEKEILLLELQRHEQE---RQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL-QKPGLESN 153 (362)
Q Consensus 83 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqq---qq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl-q~pgfl~~ 153 (362)
.++..+..+++.|+.++..+..++..++.. .+.+..++..|++++..++.....+-.-|..++ .=|.+...
T Consensus 40 ~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~ 114 (485)
T 3qne_A 40 KEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHE 114 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 456778889999999999999888766542 234666788888888888887777776665544 22444433
No 68
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=34.11 E-value=53 Score=21.91 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHE 110 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlr 110 (362)
++++++.|-..+..|..|+.|++
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 67788888888888888888876
No 69
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=34.09 E-value=1.8e+02 Score=23.91 Aligned_cols=13 Identities=8% Similarity=0.294 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 018006 119 QMQLLRERFQLME 131 (362)
Q Consensus 119 qvq~L~ERL~~~E 131 (362)
++..|+..+..+|
T Consensus 26 ei~eLk~~ve~lE 38 (106)
T 4e61_A 26 EIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 70
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.87 E-value=54 Score=21.88 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=20.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
.++++++.|=..+..|..|+.||+.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3678888888888888888888763
No 71
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.83 E-value=1.2e+02 Score=24.02 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQ 114 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq 114 (362)
..|.+.|......+..|+.++++++.
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~ 62 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENK 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777777776654
No 72
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=33.82 E-value=1.2e+02 Score=22.39 Aligned_cols=28 Identities=21% Similarity=0.149 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGF 116 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l 116 (362)
+.++.+||.-+..|...++.|+.+....
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~ 37 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEK 37 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788887777777776665544433
No 73
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.78 E-value=80 Score=25.01 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQ-----GFESQMQLLRERFQLMEQRQQKMVSF 140 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq-----~l~~qvq~L~ERL~~~E~~QqqmlsF 140 (362)
++.+++-.|...+..|..++..++++.. .++.++..|+..|..+...-.++..-
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e 78 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVE 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777766554322 23556666776666555444444433
No 74
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=33.59 E-value=65 Score=31.90 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=48.3
Q ss_pred hhhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchhc
Q 018006 83 SERQGLKDDIERLKKEKEILLLELQR-HEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL-QKPGLESN 153 (362)
Q Consensus 83 ~e~~~l~~eIe~LK~d~~~L~~EL~r-lrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl-q~pgfl~~ 153 (362)
.++..+..+++.|+.++..+..++.. -.++...+..++..+++++..++.....+-.-|...+ .=|.+.+.
T Consensus 35 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~ 107 (421)
T 1ses_A 35 REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWP 107 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 45677888899999998888888753 2233455667788888888888887777776666544 33444433
No 75
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.59 E-value=52 Score=25.36 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQM 120 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qv 120 (362)
+-|..|+.....|..|+..|+.++..+..++
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666665555444433
No 76
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.74 E-value=1.4e+02 Score=23.46 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
...-+..|+.....+..++.++..+...+..++..++..|.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777776666666666666655553
No 77
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.81 E-value=1.4e+02 Score=29.53 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018006 100 EILLLELQRHEQERQGFESQMQLLRERFQLMEQR 133 (362)
Q Consensus 100 ~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~ 133 (362)
..|..||..++++.+.+..++..+.+.+..++++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444443
No 78
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=31.72 E-value=63 Score=22.84 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=17.2
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHH
Q 018006 90 DDIERLKKE-KEILLLELQRHEQER 113 (362)
Q Consensus 90 ~eIe~LK~d-~~~L~~EL~rlrqqq 113 (362)
.+++++|++ +..+..||++++++.
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EI 31 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888887 467777777777653
No 79
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.60 E-value=1.2e+02 Score=23.36 Aligned_cols=42 Identities=10% Similarity=-0.026 Sum_probs=20.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
.++.+|..|.-..+-+..-|..|.+....-+.++..|+.++.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677766655555544444444443333334444444433
No 80
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.32 E-value=1.2e+02 Score=21.67 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQM 120 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qv 120 (362)
.+..++..|...+..|...|...+++...+..+|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666555544444433
No 81
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=30.85 E-value=2.2e+02 Score=23.27 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
.+..+.-.|.+..+.|..|-.++++.......++..|...+.++....+.++
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666666778888877777766555554
No 82
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.79 E-value=1.4e+02 Score=21.81 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 99 KEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 99 ~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
...|..++..|++++..+..++..|+..+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665544
No 83
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.73 E-value=1.5e+02 Score=21.28 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 99 KEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 99 ~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
...|..++..+..++..+..++..|++.+.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666655544
No 84
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=30.72 E-value=2e+02 Score=22.74 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018006 93 ERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLM 130 (362)
Q Consensus 93 e~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~ 130 (362)
++|+.=+..|..||...+++...++.++...+.+|..+
T Consensus 40 EqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 40 EQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333445556655555555555555444444443
No 85
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=30.08 E-value=1.9e+02 Score=27.08 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 137 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqm 137 (362)
..+++.|.-.+.....||..+--+.+.+...=+.+-+||..+|+..-.+
T Consensus 162 ~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~L 210 (242)
T 3uux_B 162 VNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLL 210 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3334444333333444444444444444333334444454444444333
No 86
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=29.68 E-value=1.3e+02 Score=22.96 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLME 131 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E 131 (362)
++...+..|+.++..+...+..++++..-.-..+..++...+..+
T Consensus 6 aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e 50 (75)
T 3mtu_A 6 AIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENE 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777755444445555554444433
No 87
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.37 E-value=1.7e+02 Score=26.71 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhc
Q 018006 135 QKMVSFVGRALQ 146 (362)
Q Consensus 135 qqmlsFL~~vlq 146 (362)
+.|.+.|.+++.
T Consensus 149 q~la~vi~~l~~ 160 (209)
T 2wvr_A 149 QYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 455555555554
No 88
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.01 E-value=73 Score=21.23 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHE 110 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlr 110 (362)
.++++++.|=..+..|..|+.||+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 367778888788888888887776
No 89
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=28.91 E-value=2.2e+02 Score=22.55 Aligned_cols=58 Identities=21% Similarity=0.295 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQE------RQGFESQMQLLRERFQLMEQRQQKMVSFVGRA 144 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqq------qq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v 144 (362)
..+..+|..|+.....|..++..++.+ ......++..|.+ +.....--|.|+..++..
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~-YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHT-YNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Confidence 346778888888888888888777643 2233444444433 333444556777777664
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.62 E-value=1.7e+02 Score=28.56 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=5.4
Q ss_pred HHHHhHHHHHHHHHH
Q 018006 111 QERQGFESQMQLLRE 125 (362)
Q Consensus 111 qqqq~l~~qvq~L~E 125 (362)
+....+..+++.+++
T Consensus 435 ~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 435 RDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHH
Confidence 333333333333333
No 91
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=28.53 E-value=46 Score=24.62 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018006 99 KEILLLELQRHEQERQGFESQMQLLRERF 127 (362)
Q Consensus 99 ~~~L~~EL~rlrqqqq~l~~qvq~L~ERL 127 (362)
...|..++..|+.++..+..++..|++.|
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555543
No 92
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=28.31 E-value=2.5e+02 Score=23.16 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 018006 125 ERFQLMEQRQQKMVSFVGRALQ 146 (362)
Q Consensus 125 ERL~~~E~~QqqmlsFL~~vlq 146 (362)
++...++++.+++...|.++++
T Consensus 74 ek~~~le~k~Kk~~~kV~Kl~~ 95 (109)
T 2fcw_A 74 EKHALLEGRTKELGYTVKKHLQ 95 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444443
No 93
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=27.97 E-value=1.7e+02 Score=25.51 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ 124 (362)
..++++|+.++..+..+|.+-+++.+.+..|..+++
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888887777766666555555544433
No 94
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.96 E-value=1.6e+02 Score=23.28 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQER 113 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqq 113 (362)
+.+.|......|..|+..+++.+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en 69 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKEN 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.89 E-value=1.8e+02 Score=28.93 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
.|+..|.-||+....-...|..|+...+.+..+|+.|+--+.
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666544444666666666666666666665543
No 96
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.39 E-value=2.5e+02 Score=24.40 Aligned_cols=50 Identities=12% Similarity=0.128 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQER-------QGFESQMQLLRERFQLMEQRQQKMV 138 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqq-------q~l~~qvq~L~ERL~~~E~~Qqqml 138 (362)
...|..|+.+...|..+|..++... +.+..++.+|.-++..+|.+-+++-
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777776666666443 3444444444444444444444433
No 97
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.72 E-value=1e+02 Score=25.01 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
..++..||.+...|..+=..|-+
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~ 27 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDH 27 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566555555544444333
No 98
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.47 E-value=1.5e+02 Score=23.28 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~E 125 (362)
.+..++.....+..+|..++..+..+..++..++.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~ 38 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKT 38 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666665555555444444443
No 99
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.43 E-value=1.5e+02 Score=24.46 Aligned_cols=7 Identities=29% Similarity=0.268 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 018006 100 EILLLEL 106 (362)
Q Consensus 100 ~~L~~EL 106 (362)
+.|..++
T Consensus 21 ~~l~~~~ 27 (125)
T 1joc_A 21 EKLQTKV 27 (125)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 100
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=26.00 E-value=1.9e+02 Score=21.59 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ 124 (362)
+++|..|=+=+..|..||..++.+.+.+..+-..|+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
No 101
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.51 E-value=1.5e+02 Score=22.86 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
...-+..|+.....+..++.++..+...+..++..++..|.
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777776666666666666553
No 102
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=25.46 E-value=1.8e+02 Score=22.48 Aligned_cols=8 Identities=38% Similarity=0.530 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 018006 91 DIERLKKE 98 (362)
Q Consensus 91 eIe~LK~d 98 (362)
-+..|+.+
T Consensus 19 ~l~~Lr~e 26 (75)
T 3a7o_A 19 TLAILQKE 26 (75)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334333
No 103
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.21 E-value=96 Score=25.81 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=3.3
Q ss_pred cHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEIL 102 (362)
Q Consensus 88 l~~eIe~LK~d~~~L 102 (362)
+.++|+.||+++..+
T Consensus 4 l~~~~~~l~~~~~~~ 18 (182)
T 3kqg_A 4 LNAQIPELKSDLEKA 18 (182)
T ss_dssp ---------CHHHHH
T ss_pred hhhhHHHHHHHHHHH
Confidence 456667777665544
No 104
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=24.70 E-value=2.1e+02 Score=21.03 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 104 LELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS 139 (362)
Q Consensus 104 ~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqmls 139 (362)
..|.||+|.+-.+-.+++.|+..-..+|+.+-.+-.
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888776666666555443
No 105
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.44 E-value=1e+02 Score=22.72 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHE 110 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlr 110 (362)
++.+++.|+.++..|..++..|+
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 106
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.20 E-value=1.2e+02 Score=24.65 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018006 90 DDIERLKKEKEILLLELQRHEQERQGFESQM 120 (362)
Q Consensus 90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qv 120 (362)
.++..|++.+..|..|-.+|+++...++.++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666655554443
No 107
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=24.15 E-value=2.3e+02 Score=28.85 Aligned_cols=74 Identities=9% Similarity=0.011 Sum_probs=48.1
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHhH----HHH-HHHHHHHHHH
Q 018006 82 ESERQGLKDDIERLKKEKEILLLELQRHEQ---------------------------ERQGF----ESQ-MQLLRERFQL 129 (362)
Q Consensus 82 e~e~~~l~~eIe~LK~d~~~L~~EL~rlrq---------------------------qqq~l----~~q-vq~L~ERL~~ 129 (362)
+.++..+..+++.|+.+++.+..++..++. +.+.+ ..+ +..+++++..
T Consensus 43 d~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~ 122 (484)
T 3lss_A 43 DKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAG 122 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999988866544 12233 445 7778888888
Q ss_pred HHHHHHHHHHHHHHHh-cCCcchhccc
Q 018006 130 MEQRQQKMVSFVGRAL-QKPGLESNFG 155 (362)
Q Consensus 130 ~E~~QqqmlsFL~~vl-q~pgfl~~L~ 155 (362)
++.....+-.-|...+ .=|.+.+.-+
T Consensus 123 le~~~~~~~~~~~~~l~~iPN~~~~~v 149 (484)
T 3lss_A 123 LAKEAQQLEEERDKLMLNVGNILHESV 149 (484)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 8888777776665544 3344444333
No 108
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.07 E-value=3.9e+02 Score=24.03 Aligned_cols=55 Identities=9% Similarity=0.171 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSF 140 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsF 140 (362)
+.+..|+..|...+.....|+..|+.+.+.++.++.....++........-+...
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL 77 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDL 77 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHH
Confidence 3455666666666666666666666666666666666666655554444433333
No 109
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.71 E-value=2.2e+02 Score=23.34 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
++..+..++++......++.+++.....+..++..|++.|.
T Consensus 42 ~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 42 LEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 110
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=23.59 E-value=3.1e+02 Score=22.62 Aligned_cols=48 Identities=23% Similarity=0.193 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKM 137 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqm 137 (362)
.+..+++++..+...|...+. +.......+|+.|.++++..|+--+.|
T Consensus 17 ql~~qL~k~~~~r~~Le~~w~---~k~E~~k~qV~~L~~~~q~sE~~L~~L 64 (112)
T 1x79_B 17 QANDQLEKTMKDKQELEDFIK---QSSEDSSHQISALVLRAQASEILLEEL 64 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666555555433 334445667777877776666544333
No 111
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.51 E-value=93 Score=29.23 Aligned_cols=28 Identities=25% Similarity=0.146 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 018006 123 LRERFQLMEQRQQKMVSFVGRALQKPGL 150 (362)
Q Consensus 123 L~ERL~~~E~~QqqmlsFL~~vlq~pgf 150 (362)
|.+.|....++..++-.-|.++.+-|-+
T Consensus 73 L~~~Lk~ar~El~~LkeElerL~sPPL~ 100 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRLGQPPSG 100 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 3333333444444444444555555533
No 112
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.48 E-value=2.4e+02 Score=22.13 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQ 111 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrq 111 (362)
..+++.|+.++..|..+|..|+.
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 113
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.28 E-value=1.3e+02 Score=23.12 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018006 87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLL 123 (362)
Q Consensus 87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L 123 (362)
++...+..+.-++..+..|+..++-....++..+++|
T Consensus 5 Gl~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 5 GLTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhcccccchhhhheeeccccchhhhhhhhhHHH
Confidence 4444555555555566555544444333333334433
No 114
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.20 E-value=1.9e+02 Score=20.12 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018006 91 DIERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 91 eIe~LK~d~~~L~~EL~rlrqq 112 (362)
+...|...++.|...+..|+.+
T Consensus 11 r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333
No 115
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.02 E-value=1.5e+02 Score=22.40 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018006 92 IERLKKEKEILLLELQRHEQERQGFESQMQLLRER 126 (362)
Q Consensus 92 Ie~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ER 126 (362)
|..|......|..+...+..+++.+..++..|...
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444443
No 116
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.15 E-value=3.3e+02 Score=22.34 Aligned_cols=27 Identities=19% Similarity=0.152 Sum_probs=19.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqq 112 (362)
+.+..+|+.|+..+..|...|..+++.
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 467788888888888887777665554
No 117
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.75 E-value=56 Score=31.58 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=9.6
Q ss_pred hhhHH---HHHHHHhhhh
Q 018006 211 SSMTF---WENIVQDVGQ 225 (362)
Q Consensus 211 ssl~~---~E~~~~~~~~ 225 (362)
-|++| |+++-.+.|.
T Consensus 113 Gsv~F~R~W~~Yk~GFG~ 130 (319)
T 1fzc_C 113 GSVDFKKNWIQYKEGFGH 130 (319)
T ss_dssp SCSCCCCCHHHHHHCEEE
T ss_pred CCcceecCHHHHhHhhCC
Confidence 34544 8888777663
No 118
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=21.35 E-value=3.3e+02 Score=23.99 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018006 93 ERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQ 134 (362)
Q Consensus 93 e~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Q 134 (362)
..|..-+..|..||.+++.....+..+...|.+++..+|..-
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555666666666555543
No 119
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=21.17 E-value=2.8e+02 Score=21.20 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQ 114 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq 114 (362)
+...|+.|..++..|...|..+.++..
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~ 28 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLS 28 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677666666665555554444
No 120
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.00 E-value=3.3e+02 Score=21.93 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006 88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ 128 (362)
Q Consensus 88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~ 128 (362)
+++-++-|++....|...+..++.+...+..++..+.+.|+
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444445555554443
No 121
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=20.66 E-value=1.9e+02 Score=19.44 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGF 116 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l 116 (362)
..|.++|-++...--.|+.+|++++..+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3466777777777777777777776543
No 122
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=20.59 E-value=2.4e+02 Score=20.12 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHE 110 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlr 110 (362)
+.+|.+||.-+..|...++.++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le 24 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLE 24 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777765555543
No 123
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=20.52 E-value=29 Score=21.86 Aligned_cols=10 Identities=60% Similarity=1.159 Sum_probs=5.3
Q ss_pred HHhhhcCCCC
Q 018006 302 EQFLTENPGS 311 (362)
Q Consensus 302 eqfLte~pgs 311 (362)
+|+|||.||.
T Consensus 19 ~qw~s~dp~p 28 (28)
T 2b3g_B 19 EQWFTEDPGP 28 (28)
T ss_dssp HHHHHC----
T ss_pred HHHhhcCCCC
Confidence 6999999974
No 124
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.51 E-value=3.4e+02 Score=27.00 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018006 105 ELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRAL 145 (362)
Q Consensus 105 EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vl 145 (362)
++.+++......+.++..|++.|...+.+.+.+-..|..+.
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333333333444555555555555544444444444433
No 125
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.41 E-value=65 Score=24.99 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLL 123 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L 123 (362)
..+..+++.|..++..|..+|..|+.+...+...+..+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
No 126
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.19 E-value=2.4e+02 Score=20.09 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018006 89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQL 129 (362)
Q Consensus 89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~ 129 (362)
..++..|+.....|...=.+|..-.+....++..|++.|..
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665555555555555556666555543
No 127
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.09 E-value=3.6e+02 Score=21.99 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006 86 QGLKDDIERLKKEKEILLLELQRHEQE 112 (362)
Q Consensus 86 ~~l~~eIe~LK~d~~~L~~EL~rlrqq 112 (362)
+.+..+|+.|+..+..|...|...++.
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 457778888888888887777665554
Done!