Query 018007
Match_columns 362
No_of_seqs 213 out of 794
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 5.7E-17 2E-21 137.4 7.3 85 272-356 14-101 (118)
2 1am9_A Srebp-1A, protein (ster 99.7 3E-17 1E-21 130.8 3.1 67 286-352 7-73 (82)
3 4h10_B Circadian locomoter out 99.5 5.7E-15 2E-19 115.9 3.9 57 286-342 9-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.5 4.9E-15 1.7E-19 113.3 2.6 54 286-339 3-62 (63)
5 1an4_A Protein (upstream stimu 99.5 8.2E-15 2.8E-19 111.3 2.3 55 285-339 5-64 (65)
6 1hlo_A Protein (transcription 99.5 7.9E-14 2.7E-18 110.1 6.3 63 287-349 14-77 (80)
7 4h10_A ARYL hydrocarbon recept 99.4 9.1E-15 3.1E-19 115.0 0.7 55 283-337 7-64 (73)
8 1nkp_B MAX protein, MYC proto- 99.4 1.2E-13 4E-18 109.5 6.7 62 287-349 4-67 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 3.8E-13 1.3E-17 108.7 6.7 61 287-347 8-70 (88)
10 3u5v_A Protein MAX, transcript 99.3 8.6E-13 2.9E-17 104.4 4.6 57 287-343 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 9E-12 3.1E-16 99.2 7.2 61 288-349 4-67 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.0 1.4E-10 4.8E-15 90.1 2.4 53 287-339 14-67 (68)
13 4f3l_A Mclock, circadian locom 99.0 4.6E-10 1.6E-14 107.4 6.2 55 284-338 11-65 (361)
14 2ql2_B Neurod1, neurogenic dif 98.9 2.7E-09 9.1E-14 80.9 5.7 51 289-339 6-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.3E-09 4.5E-14 105.7 3.0 54 283-337 11-68 (387)
16 4ath_A MITF, microphthalmia-as 98.7 2.2E-08 7.6E-13 80.8 5.2 54 296-349 3-59 (83)
17 2lfh_A DNA-binding protein inh 98.5 5.6E-08 1.9E-12 75.8 2.9 46 291-336 20-67 (68)
18 4aya_A DNA-binding protein inh 97.9 1.1E-05 3.9E-10 66.7 5.7 54 293-346 33-88 (97)
19 2wt7_A Proto-oncogene protein 48.1 37 0.0013 25.1 5.5 17 293-309 1-17 (63)
20 1p3q_Q VPS9P, vacuolar protein 44.0 26 0.00089 25.9 4.0 26 291-316 3-28 (54)
21 2jee_A YIIU; FTSZ, septum, coi 42.2 22 0.00076 28.4 3.6 27 323-349 14-40 (81)
22 2y78_A Peptidyl-prolyl CIS-tra 33.6 12 0.00042 30.9 0.9 23 1-26 1-23 (133)
23 2oqq_A Transcription factor HY 33.6 8.7 0.0003 27.3 -0.0 16 330-345 4-19 (42)
24 3muj_A Transcription factor CO 33.5 52 0.0018 28.6 4.8 36 299-334 95-133 (138)
25 3he4_B Synzip5; heterodimeric 29.0 59 0.002 22.9 3.6 26 324-349 5-30 (46)
26 2er8_A Regulatory protein Leu3 28.6 36 0.0012 24.7 2.6 21 329-349 49-69 (72)
27 1f1f_A Cytochrome C6; heme, pr 28.2 1.2E+02 0.004 21.7 5.4 40 297-337 48-87 (89)
28 1zme_C Proline utilization tra 27.5 40 0.0014 24.1 2.7 20 329-348 44-63 (70)
29 1dh3_A Transcription factor CR 26.1 47 0.0016 24.2 2.8 19 329-347 22-40 (55)
30 1hwt_C Protein (heme activator 26.1 36 0.0012 25.1 2.3 22 328-349 57-78 (81)
31 2jqq_A Conserved oligomeric go 23.4 41 0.0014 31.0 2.5 46 295-342 51-96 (204)
32 1gd2_E Transcription factor PA 23.3 52 0.0018 25.3 2.7 20 328-347 49-68 (70)
33 2ke4_A CDC42-interacting prote 21.7 1.4E+02 0.0049 24.1 5.2 38 312-349 52-89 (98)
34 3ph2_B Cytochrome C6; photosyn 21.6 1.9E+02 0.0064 20.3 5.4 39 298-337 46-84 (86)
35 1m2x_A Class B carbapenemase B 21.3 43 0.0015 28.5 2.1 32 308-340 190-221 (223)
36 1gdv_A Cytochrome C6; RED ALGA 20.6 2E+02 0.007 20.1 5.4 37 299-336 46-82 (85)
37 1jnm_A Proto-oncogene C-JUN; B 20.3 43 0.0015 24.5 1.7 13 330-342 23-35 (62)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.67 E-value=5.7e-17 Score=137.35 Aligned_cols=85 Identities=25% Similarity=0.371 Sum_probs=53.4
Q ss_pred CCCcccccCcCCCCCCCCcHHHHHHHHHHHHHHHHhhcccCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018007 272 DSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKTLSDNRAKC 348 (362)
Q Consensus 272 ~sv~~k~R~kR~~a~~~hsiaERrRRerIneri~~Lr~LVP~~~K---q~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~ 348 (362)
..++.+...|++..+.+|+++||+||++||++|.+|++|||++.+ +++|++||++||+||++||.+++.|+......
T Consensus 14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~ 93 (118)
T 4ati_A 14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 93 (118)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677888889999999999999999999999999998853 48899999999999999999999999876555
Q ss_pred cccccccc
Q 018007 349 KCSKIQKP 356 (362)
Q Consensus 349 tc~~~~k~ 356 (362)
..+...+.
T Consensus 94 ~~l~~~n~ 101 (118)
T 4ati_A 94 KKLEHANR 101 (118)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 54444433
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.65 E-value=3e-17 Score=130.80 Aligned_cols=67 Identities=22% Similarity=0.378 Sum_probs=60.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 018007 286 THPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSK 352 (362)
Q Consensus 286 ~~~hsiaERrRRerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~tc~~ 352 (362)
+..|+++||+||++||++|.+|++|||+++.++||++||++||+||++||.+++.|+.+.+.+...-
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999855599999999999999999999999999987776543
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.51 E-value=5.7e-15 Score=115.87 Aligned_cols=57 Identities=16% Similarity=0.375 Sum_probs=51.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018007 286 THPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLS 342 (362)
Q Consensus 286 ~~~hsiaERrRRerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~ 342 (362)
+..|+++||+||++||++|.+|+.|||....++||++||++||+||+.||.++.=|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 356899999999999999999999999876559999999999999999999987664
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.50 E-value=4.9e-15 Score=113.27 Aligned_cols=54 Identities=28% Similarity=0.419 Sum_probs=47.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhcccCCCCC------CCCHHHHHHHHHHHHHHHHHHHH
Q 018007 286 THPRSIAERVRRTRISERMRKLQELVPNMDK------QTNTADMLDLAVDYIKDLQNQFK 339 (362)
Q Consensus 286 ~~~hsiaERrRRerIneri~~Lr~LVP~~~K------q~dKAsIL~eAI~YIK~LQ~qVq 339 (362)
+..|.++||+||++||..|..|+.|||.+.+ +++||+||+.||+||+.||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999999999996632 36799999999999999998764
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=8.2e-15 Score=111.34 Aligned_cols=55 Identities=24% Similarity=0.437 Sum_probs=49.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhhcccCCCCC-----CCCHHHHHHHHHHHHHHHHHHHH
Q 018007 285 ATHPRSIAERVRRTRISERMRKLQELVPNMDK-----QTNTADMLDLAVDYIKDLQNQFK 339 (362)
Q Consensus 285 a~~~hsiaERrRRerIneri~~Lr~LVP~~~K-----q~dKAsIL~eAI~YIK~LQ~qVq 339 (362)
....|+++||+||++||+.|.+|+.|||.+.. +++|++||++||+||+.||++++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45679999999999999999999999998872 38999999999999999998753
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=7.9e-14 Score=110.09 Aligned_cols=63 Identities=25% Similarity=0.444 Sum_probs=57.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007 287 HPRSIAERVRRTRISERMRKLQELVPNMD-KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK 349 (362)
Q Consensus 287 ~~hsiaERrRRerIneri~~Lr~LVP~~~-Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t 349 (362)
..|+..||+||.+||+.|..|+.|||.+. .+++|++||..||+||+.|+.+++.|+.+.+.+.
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999873 2399999999999999999999999999887765
No 7
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=9.1e-15 Score=115.01 Aligned_cols=55 Identities=25% Similarity=0.420 Sum_probs=47.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhhcccCCCC---CCCCHHHHHHHHHHHHHHHHHH
Q 018007 283 GCATHPRSIAERVRRTRISERMRKLQELVPNMD---KQTNTADMLDLAVDYIKDLQNQ 337 (362)
Q Consensus 283 ~~a~~~hsiaERrRRerIneri~~Lr~LVP~~~---Kq~dKAsIL~eAI~YIK~LQ~q 337 (362)
.+++..|+.+||+||++||+.|.+|+.|||.|. .++|||+||+.||+|||.|+.-
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 344567999999999999999999999999873 3399999999999999999743
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.44 E-value=1.2e-13 Score=109.53 Aligned_cols=62 Identities=27% Similarity=0.464 Sum_probs=55.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcccCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007 287 HPRSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK 349 (362)
Q Consensus 287 ~~hsiaERrRRerIneri~~Lr~LVP~~--~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t 349 (362)
..|+..||+||++||+.|..|+++||.+ .| ++|++||.+||+||+.|+.+++.|+.+.+.+.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999985 55 99999999999999999999999988776554
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=3.8e-13 Score=108.67 Aligned_cols=61 Identities=20% Similarity=0.373 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcccCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018007 287 HPRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK 347 (362)
Q Consensus 287 ~~hsiaERrRRerIneri~~Lr~LVP~~~--Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~ 347 (362)
..|+..||+||+.||++|..|+++||.+. ++++|++||.+||+||+.|+.+++.|..+.+.
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999863 34999999999999999999999988776544
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.32 E-value=8.6e-13 Score=104.40 Aligned_cols=57 Identities=28% Similarity=0.317 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcccCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018007 287 HPRSIAERVRRTRISERMRKLQELVPN---MDKQTNTADMLDLAVDYIKDLQNQFKTLSD 343 (362)
Q Consensus 287 ~~hsiaERrRRerIneri~~Lr~LVP~---~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~ 343 (362)
..|+..||+||+.||+.|.+|+++||. .+|..+|+.||..||+||+.||+++++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999995 455347999999999999999999998764
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.26 E-value=9e-12 Score=99.20 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcccCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007 288 PRSIAERVRRTRISERMRKLQELVPNM---DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK 349 (362)
Q Consensus 288 ~hsiaERrRRerIneri~~Lr~LVP~~---~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t 349 (362)
.|+..||+||..|++.|..|+++||.+ .| .+|+.||.+||+||+.|+.+++.|..+.+...
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999965 44 89999999999999999999999998876554
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.98 E-value=1.4e-10 Score=90.06 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcccCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q 018007 287 HPRSIAERVRRTRISERMRKLQELVPNM-DKQTNTADMLDLAVDYIKDLQNQFK 339 (362)
Q Consensus 287 ~~hsiaERrRRerIneri~~Lr~LVP~~-~Kq~dKAsIL~eAI~YIK~LQ~qVq 339 (362)
..|+.-||+|+..||+.|..|+++||.. +++++|..||..||+||+.|++.++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3478889999999999999999999964 3459999999999999999998653
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.97 E-value=4.6e-10 Score=107.42 Aligned_cols=55 Identities=15% Similarity=0.399 Sum_probs=42.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 018007 284 CATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQF 338 (362)
Q Consensus 284 ~a~~~hsiaERrRRerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qV 338 (362)
..+.+|+++||+||++||+.|.+|+.|||....++||++||..||+|||.|+...
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 3445688999999999999999999999954445999999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.86 E-value=2.7e-09 Score=80.89 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHHHHHHhhcccCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 018007 289 RSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFK 339 (362)
Q Consensus 289 hsiaERrRRerIneri~~Lr~LVP~~--~Kq~dKAsIL~eAI~YIK~LQ~qVq 339 (362)
|+.-||+|+..||+.|..|+.+||.. +++++|..+|..||+||+.|++.++
T Consensus 6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 57789999999999999999999965 4569999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.81 E-value=1.3e-09 Score=105.70 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=47.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhhcccC----CCCCCCCHHHHHHHHHHHHHHHHHH
Q 018007 283 GCATHPRSIAERVRRTRISERMRKLQELVP----NMDKQTNTADMLDLAVDYIKDLQNQ 337 (362)
Q Consensus 283 ~~a~~~hsiaERrRRerIneri~~Lr~LVP----~~~Kq~dKAsIL~eAI~YIK~LQ~q 337 (362)
+.++.+|+.+||+||+|||+.|.+|+.||| ...| +||++||..||+|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence 344567999999999999999999999999 4556 99999999999999999843
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.65 E-value=2.2e-08 Score=80.79 Aligned_cols=54 Identities=30% Similarity=0.516 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcccCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007 296 RRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK 349 (362)
Q Consensus 296 RRerIneri~~Lr~LVP~~~K---q~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t 349 (362)
-|..||++|.+|..|||.+.. +++|++||..||+||+.||+.++.+.++.....
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k 59 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQK 59 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999997532 489999999999999999998888876654443
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.48 E-value=5.6e-08 Score=75.84 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCC--CCCCCHHHHHHHHHHHHHHHHH
Q 018007 291 IAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQN 336 (362)
Q Consensus 291 iaERrRRerIneri~~Lr~LVP~~--~Kq~dKAsIL~eAI~YIK~LQ~ 336 (362)
.-||+|...||+.|..||++||.. +++++|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 448999999999999999999965 4469999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.93 E-value=1.1e-05 Score=66.69 Aligned_cols=54 Identities=26% Similarity=0.393 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhhcccCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018007 293 ERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRA 346 (362)
Q Consensus 293 ERrRRerIneri~~Lr~LVP~~--~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~ 346 (362)
||.|=..||+.|..||.+||.. ++++.|..+|..||+||+.|++.++.-.....
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~ 88 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPSF 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 5677788999999999999964 55699999999999999999998876554433
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.14 E-value=37 Score=25.05 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhc
Q 018007 293 ERVRRTRISERMRKLQE 309 (362)
Q Consensus 293 ERrRRerIneri~~Lr~ 309 (362)
||++|-+...++.+.+.
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 45566666666666654
No 20
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=43.99 E-value=26 Score=25.93 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCC
Q 018007 291 IAERVRRTRISERMRKLQELVPNMDK 316 (362)
Q Consensus 291 iaERrRRerIneri~~Lr~LVP~~~K 316 (362)
.++|.+|....+-+..|+.+.|++++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 47889999999999999999999887
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.21 E-value=22 Score=28.35 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007 323 MLDLAVDYIKDLQNQFKTLSDNRAKCK 349 (362)
Q Consensus 323 IL~eAI~YIK~LQ~qVq~L~~~~~~~t 349 (362)
=++.||+-|.-||..|++|+.++..+.
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998876644
No 22
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=33.63 E-value=12 Score=30.91 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCCCCccccccCchh
Q 018007 1 MDSSTNHNYHQQSNPGLSRFNSAPTA 26 (362)
Q Consensus 1 md~~~~~~~~~~~~sGL~RyrSAPss 26 (362)
|-++.+|| +++|||.+++.+|..
T Consensus 1 ~~~~~~~~---~~~~~~~~~~~~~~~ 23 (133)
T 2y78_A 1 MGSSHHHH---HHSSGLVPRGSHMTV 23 (133)
T ss_dssp --------------CCSGGGTTTTCC
T ss_pred CCcccccc---cccccceecccCCCc
Confidence 44554443 689999999999853
No 23
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=33.57 E-value=8.7 Score=27.32 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhhh
Q 018007 330 YIKDLQNQFKTLSDNR 345 (362)
Q Consensus 330 YIK~LQ~qVq~L~~~~ 345 (362)
|+-+|+.+++.|+...
T Consensus 4 Yl~eLE~r~k~le~~n 19 (42)
T 2oqq_A 4 YLSELENRVKDLENKN 19 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7777777777777655
No 24
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=33.48 E-value=52 Score=28.62 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcccCC---CCCCCCHHHHHHHHHHHHHHH
Q 018007 299 RISERMRKLQELVPN---MDKQTNTADMLDLAVDYIKDL 334 (362)
Q Consensus 299 rIneri~~Lr~LVP~---~~Kq~dKAsIL~eAI~YIK~L 334 (362)
.|.-.|..|+++||. -..++-|..||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 578899999999983 333588999999999998876
No 25
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=29.00 E-value=59 Score=22.92 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007 324 LDLAVDYIKDLQNQFKTLSDNRAKCK 349 (362)
Q Consensus 324 L~eAI~YIK~LQ~qVq~L~~~~~~~t 349 (362)
+.+--+||++|+++..+|+.-++.++
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45667899999999888886655443
No 26
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.63 E-value=36 Score=24.71 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhc
Q 018007 329 DYIKDLQNQFKTLSDNRAKCK 349 (362)
Q Consensus 329 ~YIK~LQ~qVq~L~~~~~~~t 349 (362)
.||..|+.+|+.|+..++.+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999998776543
No 27
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=28.17 E-value=1.2e+02 Score=21.70 Aligned_cols=40 Identities=8% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018007 297 RTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQ 337 (362)
Q Consensus 297 RerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~q 337 (362)
++.|.+.+..-...+|.....++... +.+.|.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 44555555555677887765466665 47789999998754
No 28
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=27.55 E-value=40 Score=24.15 Aligned_cols=20 Identities=15% Similarity=0.483 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 018007 329 DYIKDLQNQFKTLSDNRAKC 348 (362)
Q Consensus 329 ~YIK~LQ~qVq~L~~~~~~~ 348 (362)
.||..|+.+++.|+..++.+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655444
No 29
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.08 E-value=47 Score=24.16 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 018007 329 DYIKDLQNQFKTLSDNRAK 347 (362)
Q Consensus 329 ~YIK~LQ~qVq~L~~~~~~ 347 (362)
.||..|+.+|..|+.++..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~ 40 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKT 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5777777777777766544
No 30
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.05 E-value=36 Score=25.14 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhc
Q 018007 328 VDYIKDLQNQFKTLSDNRAKCK 349 (362)
Q Consensus 328 I~YIK~LQ~qVq~L~~~~~~~t 349 (362)
-.||..|+.+|+.|+..+..+.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4799999999999998877654
No 31
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=23.42 E-value=41 Score=30.97 Aligned_cols=46 Identities=20% Similarity=0.427 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018007 295 VRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLS 342 (362)
Q Consensus 295 rRRerIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~ 342 (362)
+=|..++.=+..|+.|+-.-= ..+-.++.+||+|+|.|-+-+..|.
T Consensus 51 ~v~~Dl~~F~~QL~qL~~~~i--~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 51 KTQSDLQKFMTQLDHLIKDDI--SNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC--STTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666767777777764322 3688899999999999977665444
No 32
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.31 E-value=52 Score=25.29 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 018007 328 VDYIKDLQNQFKTLSDNRAK 347 (362)
Q Consensus 328 I~YIK~LQ~qVq~L~~~~~~ 347 (362)
-.=+..|+.+|..|..++..
T Consensus 49 ~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 49 TLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555443
No 33
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.67 E-value=1.4e+02 Score=24.06 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 018007 312 PNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK 349 (362)
Q Consensus 312 P~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~L~~~~~~~t 349 (362)
|.......-..-|.++..-|..|+..+..++.-++.+.
T Consensus 52 P~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 52 PQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp GGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55433345577888889999999999999888776664
No 34
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=21.60 E-value=1.9e+02 Score=20.32 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018007 298 TRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQ 337 (362)
Q Consensus 298 erIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~q 337 (362)
+.|-..|+.-+..+|.....++...| .+.+.||+.|..+
T Consensus 46 ~~~~~~i~~g~~~Mp~~~~~ls~~ei-~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 46 VAITTVVTNGKAGMPAFKGRLTDDQI-AAVAAYVLDQAEK 84 (86)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcccCCCHHHH-HHHHHHHHHhhhc
Confidence 34445555555688877554666664 6788999998653
No 35
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=21.29 E-value=43 Score=28.49 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=23.1
Q ss_pred hcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018007 308 QELVPNMDKQTNTADMLDLAVDYIKDLQNQFKT 340 (362)
Q Consensus 308 r~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~qVq~ 340 (362)
..++|+=.... ....|+.+++|++.++++|++
T Consensus 190 ~~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 45677655534 457899999999999998864
No 36
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=20.62 E-value=2e+02 Score=20.09 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 018007 299 RISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQN 336 (362)
Q Consensus 299 rIneri~~Lr~LVP~~~Kq~dKAsIL~eAI~YIK~LQ~ 336 (362)
.|.+.|+.-...+|.....++...| .+.+.||+.|..
T Consensus 46 ~l~~~i~~g~~~Mp~~~~~ls~~ei-~~l~~yl~~~~~ 82 (85)
T 1gdv_A 46 AITYQVQNGKNAMPAFGGRLVDEDI-EDAANYVLSQSE 82 (85)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCCCCCCHHHH-HHHHHHHHHHhh
Confidence 3444444444678876644666664 678999999875
No 37
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.30 E-value=43 Score=24.53 Aligned_cols=13 Identities=38% Similarity=0.501 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 018007 330 YIKDLQNQFKTLS 342 (362)
Q Consensus 330 YIK~LQ~qVq~L~ 342 (362)
||..|+.+|+.|+
T Consensus 23 ~~~~Le~~v~~L~ 35 (62)
T 1jnm_A 23 RIARLEEKVKTLK 35 (62)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
Done!