BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018008
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 45/167 (26%)
Query: 115 SEQDTYADIEAAYKCLEETYGVKEEDIILYGQSVGSGPTLELAVRLPRLRAVILHSPILS 174
+ D ADI AA + LEE V + + G S+G T+ A + P A I+ PI +
Sbjct: 98 TASDWTADIVAAMRWLEERCDV----LFMTGLSMGGALTVWAAGQFPERFAGIM--PINA 151
Query: 175 GLRVMYPVKRTFWFD---------IYKNIDK----------------------------- 196
LR+ P F+ I +I
Sbjct: 152 ALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAIKHLITIGAVAEML 211
Query: 197 IPLVECPVLVIHGTEDEVVDFSHGKQLWE-LCKDKYEPLWLKGGNHC 242
+P V+CP L+I ED VV +G+ ++ + + E LWL+ H
Sbjct: 212 LPRVKCPALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLENSYHV 258
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 45/166 (27%)
Query: 115 SEQDTYADIEAAYKCLEETYGVKEEDIILYGQSVGSGPTLELAVRLPRLRAVILHSPILS 174
+ D ADI AA + LEE V + + G S+G T+ A + P A I+ PI +
Sbjct: 100 TASDWTADIVAAMRWLEERCDV----LFMTGLSMGGALTVWAAGQFPERFAGIM--PINA 153
Query: 175 GLRVMYPVKRTFWFD---------IYKNIDK----------------------------- 196
LR+ P F+ I +I
Sbjct: 154 ALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAIKHLITIGAVAEML 213
Query: 197 IPLVECPVLVIHGTEDEVVDFSHGKQLWE-LCKDKYEPLWLKGGNH 241
+P V+CP L+I ED VV +G+ ++ + + E LWL+ H
Sbjct: 214 LPRVKCPALIIQSREDHVVPPHNGELIYNGIGSTEKELLWLENSYH 259
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 179 MYPVKRTFWFDIYKNIDK-IPLVECPVLVIHGTEDEVVDFSHGKQLWELC 227
M+P R W D + D+ I + L+IHG ED+VV S +L EL
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELI 239
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 179 MYPVKRTFWFDIYKNIDK-IPLVECPVLVIHGTEDEVVDFSHGKQLWELC 227
M+P R W D + D+ I + L+IHG ED+VV S +L EL
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELI 239
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 196 KIPLVEC------PVLVIHGTEDEVVDFSHGKQLWELCKDKYEPLWLKGGNHCNLELYPE 249
++P+ E PV +IHGT+D VV + K+ ++ ++ L ++G +HC + Y +
Sbjct: 196 QLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHL-IEGADHCFSDSYQK 254
Query: 250 NVSEQGSDQQEN 261
N +D +N
Sbjct: 255 NAVNLTTDFLQN 266
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 196 KIPLVEC------PVLVIHGTEDEVVDFSHGKQLWELCKDKYEPLWLKGGNHCNLELYPE 249
++P+ E PV +IHGT+D VV + K+ ++ ++ L ++G +HC + Y +
Sbjct: 196 QLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHL-IEGADHCFSDSYQK 254
Query: 250 NVSEQGSDQQEN 261
N +D +N
Sbjct: 255 NAVNLTTDFLQN 266
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 20/91 (21%)
Query: 135 GVKEEDIILYGQSVGSGPTLELAVRLPRLRAVILHSPILSGLRVMYPVKRTFWFDIYKNI 194
G+ E IIL G S G L A R ++ L G+ + TF
Sbjct: 112 GIAAERIILAGFSQGGAVVLHTAFRR--------YAQPLGGVLALSTYAPTF-------- 155
Query: 195 DKIPLVE----CPVLVIHGTEDEVVDFSHGK 221
D + L E PVL +HG++D+VVD + G+
Sbjct: 156 DDLALDERHKRIPVLHLHGSQDDVVDPALGR 186
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 197 IPLVECPVLVIHGTEDEVV-----DFSH 219
+P V+CP L++HG +D +V DF H
Sbjct: 192 LPRVQCPALIVHGEKDPLVPRFHADFIH 219
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 197 IPLVECPVLVIHGTEDEVV-----DFSH 219
+P V+CP L++HG +D +V DF H
Sbjct: 192 LPRVQCPALIVHGEKDPLVPRFHADFIH 219
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 197 IPLVECPVLVIHGTEDEVV-----DFSH 219
+P V+CP L++HG +D +V DF H
Sbjct: 192 LPRVQCPALIVHGEKDPLVPRFHADFIH 219
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 136 VKEEDIILYGQSVGSGPTLELAVRLPRLRAVILHSPILSGLRVMYPVKRTFWFDIYKN 193
V E+ + + G S G G +L A PR+R V+ P LS KR + D+ KN
Sbjct: 197 VDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDY------KRVWDLDLAKN 248
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 196 KIPLVEC------PVLVIHGTEDEVVDFSHGKQLWELCKDKYEPLWLKGGNHCNLELYPE 249
++P+ E PV +IHGT+D VV + K+ ++ ++ L ++G +HC + Y +
Sbjct: 196 QLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQNSTLHL-IEGADHCFSDSYQK 254
Query: 250 NVSEQGSD 257
N +D
Sbjct: 255 NAVNLTTD 262
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 185 TFWFDIYKNIDKIPLVECPVLVIHGTEDEVVDFSHGKQLWELCKDKYEPLWLKGGNHCNL 244
T W+ ++ IP ++ P L++HGT D + + +++ E + ++G H L
Sbjct: 204 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 261
Query: 245 ELYPENVS 252
+ E V+
Sbjct: 262 WTHAEEVN 269
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 195 DKIPLVECPVLVIHGTEDEVVDFS 218
D + ++ PVLV HGT+D+VV ++
Sbjct: 209 DDLKRIDVPVLVAHGTDDQVVPYA 232
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 185 TFWFDIYKNIDKIPLVECPVLVIHGTEDEVVDFSHGKQLWELCKDKYEPLWLKGGNHCNL 244
T W+ ++ IP ++ P L++HGT D + + +++ E + ++G H L
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 260
Query: 245 ELYPENVS 252
+ E V+
Sbjct: 261 WTHAEEVN 268
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 185 TFWFDIYKNIDKIPLVECPVLVIHGTEDEVVDFSHGKQLWELCKDKYEPLWLKGGNHCNL 244
T W+ ++ IP ++ P L++HGT D + + +++ E + ++G H L
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 260
Query: 245 ELYPENVS 252
+ E V+
Sbjct: 261 WTHAEEVN 268
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 185 TFWFDIYKNIDKIPLVECPVLVIHGTEDEVVDFSHGKQLWELCKDKYEPLWLKGGNHCNL 244
T W+ ++ IP ++ P L++HGT D + + +++ E + ++G H L
Sbjct: 203 TTWYTDFRA--DIPRIDVPALILHGTGDRTLPIENTARVFHKALPSAEYVEVEGAPHGLL 260
Query: 245 ELYPENVS 252
+ E V+
Sbjct: 261 WTHAEEVN 268
>pdb|2VWB|A Chain A, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis.
pdb|2VWB|B Chain B, Structure Of The Archaeal Kae1-Bud32 Fusion Protein
Mj1130: A Model For The Eukaryotic Ekc-Keops Subcomplex
Involved In Transcription And Telomere Homeostasis
Length = 535
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 128 KCLEETYGV---KEEDIILYGQSVGSGPTLELAVRLPRLRAVILHSPILS 174
K ++E + V E D+I + Q G GP+L + + R ++ L PI+
Sbjct: 54 KLIKEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIG 103
>pdb|3ENH|A Chain A, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3ENH|B Chain B, Crystal Structure Of Cgi121BUD32KAE1 COMPLEX
pdb|3EN9|A Chain A, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
pdb|3EN9|B Chain B, Structure Of The Methanococcus Jannaschii Kae1-Bud32
Fusion Protein
Length = 540
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 128 KCLEETYGV---KEEDIILYGQSVGSGPTLELAVRLPRLRAVILHSPILS 174
K ++E + V E D+I + Q G GP+L + + R ++ L PI+
Sbjct: 59 KLIKEAFEVVDKNEIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPIIG 108
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 209 GTEDEVVDFSHGKQLWELCKDKYEPLWLKGGNHCNLELYPEN 250
ED + F HG+ + L D + W KG NH + L+P N
Sbjct: 28 AVEDNELTFKHGEIIIVL--DDSDANWWKGENHRGIGLFPSN 67
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 203 PVLVIHGTEDEVVDF----SHGKQLWELCKDKYEPLWLKGGNHC---NLELYPENVSE 253
PVL++HG +DE V + + KQ ++ CK P G HC +LEL E V E
Sbjct: 191 PVLIVHGDQDEAVPYEASVAFSKQ-YKNCKLVTIP----GDTHCYDHHLELVTEAVKE 243
>pdb|2JBW|A Chain A, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|B Chain B, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|C Chain C, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|D Chain D, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase
Length = 386
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 22/145 (15%)
Query: 125 AAYKCLEETYGVKEEDIILYGQSVGSGPTLELAVRLPRLRAVILHSPI--LSGLRVMYPV 182
A L + ++ + I + G+S+G L+ A PRL A I L + P+
Sbjct: 209 AVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETPL 268
Query: 183 KRTFWFDIYK----------------NIDKIPLVECPVLVIHGTEDEVVDFSHGKQLWEL 226
+ W + K D + + CP ++HG DE V S + EL
Sbjct: 269 TKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLEL 327
Query: 227 CKDKYEPLWL-KGGNHC--NLELYP 248
++ L + K G+HC NL + P
Sbjct: 328 VPAEHLNLVVEKDGDHCCHNLGIRP 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,768,352
Number of Sequences: 62578
Number of extensions: 390019
Number of successful extensions: 790
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 38
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)