Query 018009
Match_columns 362
No_of_seqs 213 out of 1415
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 3.5E-98 8E-103 744.9 31.3 356 1-356 1-370 (524)
2 PLN02998 beta-glucosidase 100.0 4.5E-94 9.8E-99 731.1 32.0 332 6-337 7-341 (497)
3 PLN02849 beta-glucosidase 100.0 1.3E-93 2.9E-98 728.7 31.7 336 1-337 1-337 (503)
4 PLN02814 beta-glucosidase 100.0 3.7E-92 8E-97 718.2 30.4 311 25-337 23-335 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 4.2E-91 9.2E-96 689.6 27.4 298 28-338 2-309 (460)
6 TIGR01233 lacG 6-phospho-beta- 100.0 5.5E-88 1.2E-92 683.9 29.1 294 28-336 2-305 (467)
7 PRK09593 arb 6-phospho-beta-gl 100.0 8.8E-88 1.9E-92 683.7 29.2 297 27-337 3-322 (478)
8 PRK13511 6-phospho-beta-galact 100.0 9.5E-88 2E-92 683.3 28.7 295 28-337 3-307 (469)
9 PRK09589 celA 6-phospho-beta-g 100.0 7.6E-87 1.6E-91 676.6 29.2 294 29-336 3-320 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 6.8E-88 1.5E-92 683.6 21.4 298 27-338 2-306 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 3.4E-86 7.4E-91 671.5 31.1 298 26-337 2-323 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 2.7E-85 5.8E-90 664.0 29.2 295 29-337 3-319 (474)
13 TIGR03356 BGL beta-galactosida 100.0 3.3E-84 7.1E-89 650.8 28.9 293 30-337 1-296 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.4 8.4E-13 1.8E-17 131.2 9.1 108 80-191 10-140 (374)
15 PF00150 Cellulase: Cellulase 99.3 4.2E-12 9E-17 119.7 9.6 109 81-192 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 98.8 9.6E-09 2.1E-13 97.0 9.0 83 102-192 2-86 (254)
17 COG1874 LacA Beta-galactosidas 98.6 5.7E-08 1.2E-12 102.2 8.0 114 81-198 31-171 (673)
18 COG2730 BglC Endoglucanase [Ca 98.2 5.7E-06 1.2E-10 83.4 9.9 109 83-191 76-193 (407)
19 PF01229 Glyco_hydro_39: Glyco 98.2 5.3E-06 1.1E-10 85.5 9.7 106 82-192 41-168 (486)
20 PF07745 Glyco_hydro_53: Glyco 98.2 5.8E-05 1.3E-09 73.9 15.2 102 83-191 27-137 (332)
21 PF00331 Glyco_hydro_10: Glyco 98.0 2.9E-05 6.3E-10 75.9 10.5 123 30-192 6-137 (320)
22 PF01301 Glyco_hydro_35: Glyco 97.7 0.00013 2.8E-09 71.4 8.9 110 80-190 24-151 (319)
23 PF01373 Glyco_hydro_14: Glyco 97.6 0.00015 3.3E-09 72.2 6.6 99 79-180 15-144 (402)
24 COG3867 Arabinogalactan endo-1 97.5 0.009 2E-07 57.2 17.1 137 26-190 31-182 (403)
25 PLN02803 beta-amylase 97.4 0.00047 1E-08 70.4 8.5 107 79-190 106-251 (548)
26 PLN02161 beta-amylase 97.4 0.00046 9.9E-09 70.2 8.2 110 76-190 113-261 (531)
27 PLN00197 beta-amylase; Provisi 97.4 0.00056 1.2E-08 70.1 8.6 107 79-190 126-271 (573)
28 PLN02801 beta-amylase 97.3 0.0014 3E-08 66.8 9.7 101 77-180 34-173 (517)
29 PLN02905 beta-amylase 97.2 0.0019 4E-08 67.2 9.6 101 76-179 282-421 (702)
30 PF13204 DUF4038: Protein of u 97.2 0.0044 9.6E-08 59.8 11.4 102 83-189 33-156 (289)
31 PLN02705 beta-amylase 97.1 0.0025 5.3E-08 66.1 9.5 100 77-179 265-403 (681)
32 PLN03059 beta-galactosidase; P 97.1 0.0038 8.3E-08 67.6 10.8 110 80-191 59-189 (840)
33 COG3693 XynA Beta-1,4-xylanase 96.9 0.0027 5.8E-08 61.4 7.0 96 90-191 56-153 (345)
34 PF14587 Glyco_hydr_30_2: O-Gl 96.8 0.0035 7.5E-08 62.3 7.1 80 111-191 95-185 (384)
35 PF02836 Glyco_hydro_2_C: Glyc 96.4 0.016 3.6E-07 55.7 9.2 92 79-189 35-132 (298)
36 PF14488 DUF4434: Domain of un 95.8 0.088 1.9E-06 46.7 9.8 101 81-190 21-131 (166)
37 KOG0496 Beta-galactosidase [Ca 95.7 0.044 9.6E-07 57.5 8.7 109 80-190 49-176 (649)
38 PRK10150 beta-D-glucuronidase; 95.4 0.056 1.2E-06 57.3 8.7 93 81-190 314-419 (604)
39 PRK09525 lacZ beta-D-galactosi 92.9 0.37 7.9E-06 54.4 8.6 93 79-190 370-464 (1027)
40 PF07488 Glyco_hydro_67M: Glyc 92.7 0.91 2E-05 43.9 9.7 87 79-178 56-150 (328)
41 COG3664 XynB Beta-xylosidase [ 91.5 0.34 7.3E-06 48.5 5.4 100 89-193 14-118 (428)
42 PRK10340 ebgA cryptic beta-D-g 91.2 0.77 1.7E-05 51.9 8.6 90 79-190 354-451 (1021)
43 COG3250 LacZ Beta-galactosidas 90.5 1.2 2.6E-05 48.9 9.0 90 76-190 317-408 (808)
44 smart00642 Aamy Alpha-amylase 88.3 1.4 2.9E-05 39.0 6.3 63 79-141 18-91 (166)
45 KOG2233 Alpha-N-acetylglucosam 82.5 8 0.00017 39.9 9.0 112 79-190 77-249 (666)
46 COG3934 Endo-beta-mannanase [C 82.0 0.7 1.5E-05 47.3 1.5 109 82-191 28-150 (587)
47 PF03198 Glyco_hydro_72: Gluca 80.8 11 0.00024 36.7 9.2 48 81-142 54-101 (314)
48 PF14871 GHL6: Hypothetical gl 79.1 8 0.00017 32.9 6.8 58 84-142 4-66 (132)
49 PF00128 Alpha-amylase: Alpha 78.6 3.3 7.2E-05 38.8 4.9 58 83-141 7-73 (316)
50 PLN02361 alpha-amylase 77.2 3.8 8.3E-05 41.5 5.0 64 77-140 26-96 (401)
51 PLN00196 alpha-amylase; Provis 76.6 4.4 9.5E-05 41.4 5.3 62 79-140 43-112 (428)
52 TIGR00612 ispG_gcpE 1-hydroxy- 76.2 21 0.00045 35.3 9.5 88 72-173 74-161 (346)
53 PF10566 Glyco_hydro_97: Glyco 75.8 13 0.00029 35.6 8.0 118 57-175 10-149 (273)
54 PRK14041 oxaloacetate decarbox 75.3 12 0.00026 38.8 8.0 97 78-191 88-209 (467)
55 PF02638 DUF187: Glycosyl hydr 74.7 14 0.0003 36.0 8.0 99 79-177 18-154 (311)
56 PRK14040 oxaloacetate decarbox 74.1 12 0.00026 39.8 8.0 97 78-191 90-211 (593)
57 cd07945 DRE_TIM_CMS Leptospira 72.9 12 0.00027 35.8 7.1 84 81-175 75-159 (280)
58 cd07939 DRE_TIM_NifV Streptomy 72.6 13 0.00028 35.0 7.1 79 82-174 71-150 (259)
59 PRK09441 cytoplasmic alpha-amy 71.9 8.2 0.00018 39.8 6.0 65 77-141 19-102 (479)
60 cd06593 GH31_xylosidase_YicI Y 71.6 25 0.00054 33.9 9.0 106 82-190 26-161 (308)
61 COG1523 PulA Type II secretory 70.8 8.8 0.00019 41.6 6.1 62 79-140 197-285 (697)
62 TIGR02402 trehalose_TreZ malto 70.1 29 0.00063 36.5 9.7 92 79-177 110-237 (542)
63 cd03174 DRE_TIM_metallolyase D 69.8 16 0.00035 33.9 7.1 80 83-174 77-157 (265)
64 cd07944 DRE_TIM_HOA_like 4-hyd 69.7 20 0.00042 34.1 7.7 65 83-174 85-149 (266)
65 PRK10933 trehalose-6-phosphate 69.6 11 0.00023 39.9 6.3 63 77-141 30-102 (551)
66 PRK05692 hydroxymethylglutaryl 69.1 21 0.00045 34.4 7.7 86 81-175 80-167 (287)
67 TIGR02403 trehalose_treC alpha 68.8 12 0.00025 39.5 6.4 63 78-141 25-96 (543)
68 cd06592 GH31_glucosidase_KIAA1 67.7 32 0.00069 33.3 8.8 107 82-191 32-168 (303)
69 PRK05402 glycogen branching en 67.5 35 0.00076 37.3 9.9 92 80-177 265-397 (726)
70 PRK12313 glycogen branching en 67.3 32 0.0007 36.9 9.5 93 79-177 169-302 (633)
71 cd07937 DRE_TIM_PC_TC_5S Pyruv 66.9 35 0.00076 32.5 8.8 69 82-175 93-161 (275)
72 cd06601 GH31_lyase_GLase GLase 66.8 30 0.00064 34.1 8.4 79 114-194 58-139 (332)
73 PRK12581 oxaloacetate decarbox 66.7 23 0.0005 36.6 7.9 93 35-147 54-159 (468)
74 PRK09505 malS alpha-amylase; R 66.6 14 0.0003 40.1 6.5 60 82-141 232-313 (683)
75 PLN02746 hydroxymethylglutaryl 66.4 24 0.00053 35.0 7.8 86 81-175 122-209 (347)
76 PF12876 Cellulase-like: Sugar 65.8 3.5 7.5E-05 32.2 1.4 19 172-190 1-22 (88)
77 PRK03705 glycogen debranching 65.7 14 0.0003 40.0 6.3 55 86-141 185-263 (658)
78 TIGR02090 LEU1_arch isopropylm 65.3 22 0.00047 35.4 7.3 107 81-191 72-197 (363)
79 PRK12331 oxaloacetate decarbox 64.9 28 0.00061 35.8 8.1 92 83-191 99-210 (448)
80 TIGR00433 bioB biotin syntheta 64.3 19 0.00041 34.2 6.5 56 82-140 122-178 (296)
81 COG2100 Predicted Fe-S oxidore 63.8 24 0.00051 34.9 6.8 82 76-173 197-284 (414)
82 PLN02784 alpha-amylase 63.3 15 0.00033 40.6 6.1 64 77-140 518-588 (894)
83 cd06602 GH31_MGAM_SI_GAA This 63.1 46 0.001 32.8 9.1 106 83-191 27-168 (339)
84 PRK10785 maltodextrin glucosid 62.3 19 0.00041 38.4 6.6 54 82-141 181-247 (598)
85 PRK00366 ispG 4-hydroxy-3-meth 62.2 46 0.00099 33.1 8.6 73 90-173 98-170 (360)
86 TIGR03581 EF_0839 conserved hy 62.1 37 0.0008 31.5 7.4 77 77-165 132-230 (236)
87 COG0821 gcpE 1-hydroxy-2-methy 62.0 66 0.0014 31.8 9.5 74 89-174 91-164 (361)
88 TIGR02456 treS_nterm trehalose 61.0 18 0.0004 37.9 6.1 63 79-141 27-97 (539)
89 TIGR01108 oadA oxaloacetate de 60.2 34 0.00074 36.4 8.0 92 83-191 94-205 (582)
90 PRK08255 salicylyl-CoA 5-hydro 60.1 2.7E+02 0.0058 30.6 15.3 160 89-271 440-640 (765)
91 PF08139 LPAM_1: Prokaryotic m 59.9 7.2 0.00016 23.5 1.6 16 1-16 6-21 (25)
92 TIGR02660 nifV_homocitr homoci 59.9 30 0.00064 34.5 7.1 61 82-142 74-135 (365)
93 cd06543 GH18_PF-ChiA-like PF-C 59.9 59 0.0013 31.4 9.0 84 87-177 19-104 (294)
94 cd07948 DRE_TIM_HCS Saccharomy 59.6 17 0.00036 34.6 5.1 60 82-141 73-133 (262)
95 cd06591 GH31_xylosidase_XylS X 59.3 66 0.0014 31.3 9.4 79 114-193 60-164 (319)
96 PRK05799 coproporphyrinogen II 59.3 23 0.00049 35.2 6.2 94 82-192 98-195 (374)
97 cd06600 GH31_MGAM-like This fa 58.8 69 0.0015 31.1 9.4 106 84-192 28-164 (317)
98 cd06603 GH31_GANC_GANAB_alpha 58.8 60 0.0013 31.8 9.0 79 115-193 59-167 (339)
99 cd06598 GH31_transferase_CtsZ 58.7 67 0.0015 31.2 9.3 107 83-192 27-168 (317)
100 PRK12858 tagatose 1,6-diphosph 58.3 41 0.00089 33.3 7.7 52 86-140 112-163 (340)
101 TIGR01210 conserved hypothetic 58.2 57 0.0012 31.8 8.6 108 83-204 117-229 (313)
102 PF03511 Fanconi_A: Fanconi an 58.1 7.4 0.00016 28.7 1.8 38 104-143 19-56 (64)
103 PRK11858 aksA trans-homoaconit 58.0 36 0.00078 34.1 7.4 59 83-141 78-137 (378)
104 TIGR03217 4OH_2_O_val_ald 4-hy 57.5 1E+02 0.0022 30.4 10.3 93 82-190 89-200 (333)
105 PRK14510 putative bifunctional 57.2 18 0.00039 41.9 5.7 63 79-141 184-268 (1221)
106 cd07938 DRE_TIM_HMGL 3-hydroxy 56.3 50 0.0011 31.5 7.7 84 82-174 75-160 (274)
107 PF03659 Glyco_hydro_71: Glyco 56.2 62 0.0013 32.6 8.7 52 80-141 17-68 (386)
108 PF12891 Glyco_hydro_44: Glyco 55.9 16 0.00034 34.4 4.1 74 119-192 23-138 (239)
109 PRK14705 glycogen branching en 55.5 73 0.0016 37.0 10.0 91 86-177 772-897 (1224)
110 cd07943 DRE_TIM_HOA 4-hydroxy- 55.4 47 0.001 31.2 7.4 47 82-141 87-133 (263)
111 cd02742 GH20_hexosaminidase Be 55.1 81 0.0018 30.4 9.1 63 82-150 18-99 (303)
112 TIGR01515 branching_enzym alph 55.1 78 0.0017 33.9 9.7 98 80-177 156-288 (613)
113 TIGR03234 OH-pyruv-isom hydrox 54.3 33 0.00071 31.7 6.1 65 79-146 83-150 (254)
114 KOG1065 Maltase glucoamylase a 54.1 61 0.0013 35.7 8.6 104 85-194 316-454 (805)
115 TIGR02629 L_rham_iso_rhiz L-rh 54.1 64 0.0014 32.8 8.3 88 83-184 73-171 (412)
116 cd06599 GH31_glycosidase_Aec37 53.5 1.1E+02 0.0024 29.7 9.9 108 83-191 32-171 (317)
117 PRK04161 tagatose 1,6-diphosph 53.5 47 0.001 32.7 7.0 90 85-183 112-204 (329)
118 cd07940 DRE_TIM_IPMS 2-isoprop 53.3 44 0.00096 31.5 6.9 77 83-174 72-154 (268)
119 COG0366 AmyA Glycosidases [Car 53.3 25 0.00054 35.7 5.5 53 84-142 33-101 (505)
120 cd07941 DRE_TIM_LeuA3 Desulfob 52.7 52 0.0011 31.3 7.2 81 83-174 81-162 (273)
121 COG3589 Uncharacterized conser 52.3 52 0.0011 32.6 7.0 70 85-168 21-90 (360)
122 PRK07379 coproporphyrinogen II 51.7 36 0.00078 34.3 6.2 105 82-202 114-221 (400)
123 PF02065 Melibiase: Melibiase; 50.7 1.1E+02 0.0024 31.0 9.5 139 81-246 59-227 (394)
124 PRK08195 4-hyroxy-2-oxovalerat 50.5 62 0.0013 31.9 7.6 47 83-142 91-137 (337)
125 PRK14511 maltooligosyl trehalo 50.3 35 0.00077 38.0 6.3 57 79-141 19-90 (879)
126 PRK12399 tagatose 1,6-diphosph 49.9 82 0.0018 31.0 8.1 58 86-146 111-168 (324)
127 cd02803 OYE_like_FMN_family Ol 49.7 1.7E+02 0.0037 28.1 10.5 145 105-271 62-230 (327)
128 TIGR03471 HpnJ hopanoid biosyn 49.2 58 0.0013 33.4 7.4 59 83-146 287-348 (472)
129 PLN02447 1,4-alpha-glucan-bran 49.0 35 0.00077 37.4 6.0 87 85-177 256-383 (758)
130 PF05089 NAGLU: Alpha-N-acetyl 48.4 43 0.00092 33.1 5.9 110 79-190 18-185 (333)
131 PF01120 Alpha_L_fucos: Alpha- 48.2 60 0.0013 32.0 7.1 59 86-144 97-162 (346)
132 PRK09936 hypothetical protein; 47.9 1.4E+02 0.003 29.1 9.1 62 81-151 39-101 (296)
133 PRK09058 coproporphyrinogen II 47.3 62 0.0013 33.1 7.3 106 82-203 162-270 (449)
134 TIGR02401 trehalose_TreY malto 47.1 42 0.00091 37.2 6.2 63 79-141 15-86 (825)
135 cd06545 GH18_3CO4_chitinase Th 46.9 58 0.0012 30.4 6.5 73 100-177 27-99 (253)
136 PRK05628 coproporphyrinogen II 46.2 1.1E+02 0.0025 30.2 8.8 95 82-192 107-204 (375)
137 PRK12568 glycogen branching en 45.4 45 0.00097 36.5 6.0 98 79-177 268-401 (730)
138 COG1501 Alpha-glucosidases, fa 45.3 83 0.0018 34.8 8.1 99 92-195 294-422 (772)
139 cd02932 OYE_YqiM_FMN Old yello 45.1 3E+02 0.0066 26.8 16.6 41 104-144 61-101 (336)
140 PRK12677 xylose isomerase; Pro 44.7 2E+02 0.0043 28.9 10.3 91 81-178 32-128 (384)
141 TIGR00539 hemN_rel putative ox 44.7 65 0.0014 31.8 6.8 93 82-190 99-194 (360)
142 PRK08446 coproporphyrinogen II 44.2 1.3E+02 0.0029 29.5 8.9 92 83-190 98-192 (350)
143 TIGR01232 lacD tagatose 1,6-di 43.9 91 0.002 30.7 7.3 59 85-146 111-169 (325)
144 PRK12330 oxaloacetate decarbox 43.4 91 0.002 32.6 7.7 97 79-191 91-213 (499)
145 PRK09282 pyruvate carboxylase 43.2 92 0.002 33.3 7.9 93 82-191 98-210 (592)
146 TIGR02104 pulA_typeI pullulana 43.2 54 0.0012 35.0 6.3 23 119-141 228-250 (605)
147 TIGR02100 glgX_debranch glycog 42.3 63 0.0014 35.1 6.7 56 86-141 190-266 (688)
148 PLN02389 biotin synthase 42.2 77 0.0017 31.8 6.9 59 80-141 175-234 (379)
149 TIGR00538 hemN oxygen-independ 42.2 46 0.001 34.1 5.4 59 82-146 150-213 (455)
150 cd06604 GH31_glucosidase_II_Ma 41.8 1.9E+02 0.0041 28.2 9.5 69 122-192 66-163 (339)
151 cd06565 GH20_GcnA-like Glycosy 41.7 89 0.0019 30.2 7.1 63 81-150 18-87 (301)
152 cd07947 DRE_TIM_Re_CS Clostrid 41.7 70 0.0015 30.7 6.2 61 80-140 74-135 (279)
153 PTZ00445 p36-lilke protein; Pr 41.6 54 0.0012 30.4 5.1 56 86-141 35-99 (219)
154 PRK14507 putative bifunctional 40.6 93 0.002 37.4 8.0 57 79-141 757-828 (1693)
155 cd06525 GH25_Lyc-like Lyc mura 40.3 2.2E+02 0.0049 25.0 9.0 24 160-183 100-123 (184)
156 PF04914 DltD_C: DltD C-termin 40.1 84 0.0018 26.7 5.8 58 118-179 34-91 (130)
157 cd04733 OYE_like_2_FMN Old yel 40.0 3.6E+02 0.0079 26.3 16.3 40 104-143 63-105 (338)
158 cd02874 GH18_CFLE_spore_hydrol 39.1 1E+02 0.0022 29.6 7.0 84 86-177 16-103 (313)
159 smart00729 Elp3 Elongator prot 38.6 2.2E+02 0.0049 24.3 8.7 59 79-140 96-157 (216)
160 PRK13347 coproporphyrinogen II 38.6 58 0.0012 33.4 5.4 59 82-146 151-214 (453)
161 PRK01060 endonuclease IV; Prov 38.5 1.5E+02 0.0031 27.8 7.9 53 80-137 12-64 (281)
162 PRK06294 coproporphyrinogen II 38.3 94 0.002 30.9 6.8 94 82-192 102-199 (370)
163 PRK05904 coproporphyrinogen II 38.0 1.9E+02 0.0042 28.6 8.9 92 83-191 103-198 (353)
164 PRK08599 coproporphyrinogen II 37.9 1.7E+02 0.0036 29.0 8.5 95 82-192 99-196 (377)
165 TIGR02635 RhaI_grampos L-rhamn 37.7 1.8E+02 0.004 29.2 8.7 84 83-183 43-136 (378)
166 PF01055 Glyco_hydro_31: Glyco 37.6 1.3E+02 0.0028 30.4 7.8 109 81-192 44-184 (441)
167 PRK05660 HemN family oxidoredu 37.2 2E+02 0.0042 28.7 8.9 94 82-191 106-202 (378)
168 cd06542 GH18_EndoS-like Endo-b 36.1 1.1E+02 0.0024 28.3 6.6 55 119-177 50-104 (255)
169 PLN02960 alpha-amylase 35.8 1E+02 0.0022 34.6 6.9 94 78-177 414-549 (897)
170 PRK09997 hydroxypyruvate isome 35.5 96 0.0021 28.8 6.1 62 82-146 87-151 (258)
171 PRK08208 coproporphyrinogen II 35.3 1.5E+02 0.0032 30.2 7.8 92 82-190 140-235 (430)
172 PTZ00445 p36-lilke protein; Pr 35.2 65 0.0014 29.9 4.6 64 120-190 29-103 (219)
173 PF04646 DUF604: Protein of un 35.1 16 0.00035 34.6 0.7 73 128-203 76-148 (255)
174 TIGR02631 xylA_Arthro xylose i 34.9 3.6E+02 0.0079 27.0 10.4 97 75-178 27-129 (382)
175 PRK14706 glycogen branching en 34.6 2.9E+02 0.0064 29.8 10.2 90 87-177 175-299 (639)
176 PLN02925 4-hydroxy-3-methylbut 34.6 1.2E+02 0.0026 33.0 7.1 52 122-174 212-263 (733)
177 TIGR01211 ELP3 histone acetylt 34.5 1.7E+02 0.0037 30.8 8.1 106 82-204 205-316 (522)
178 cd06589 GH31 The enzymes of gl 34.4 1.5E+02 0.0032 27.9 7.1 90 83-192 27-120 (265)
179 cd06568 GH20_SpHex_like A subg 34.4 1.5E+02 0.0032 29.1 7.4 63 82-150 20-102 (329)
180 PF00682 HMGL-like: HMGL-like 34.3 1.4E+02 0.003 27.3 6.8 79 83-175 66-149 (237)
181 TIGR00542 hxl6Piso_put hexulos 34.0 63 0.0014 30.4 4.6 60 79-140 93-153 (279)
182 TIGR01212 radical SAM protein, 33.7 1.7E+02 0.0037 28.2 7.6 72 119-203 162-233 (302)
183 PRK09249 coproporphyrinogen II 33.0 92 0.002 31.9 5.9 61 82-146 150-213 (453)
184 PRK09856 fructoselysine 3-epim 32.8 56 0.0012 30.5 4.0 60 79-139 89-148 (275)
185 KOG0470 1,4-alpha-glucan branc 32.5 63 0.0014 35.2 4.6 64 79-142 253-333 (757)
186 COG3661 AguA Alpha-glucuronida 31.9 2.5E+02 0.0055 29.0 8.4 72 80-158 183-254 (684)
187 COG5520 O-Glycosyl hydrolase [ 31.2 1.6E+02 0.0035 29.6 6.8 94 91-192 77-181 (433)
188 PRK07094 biotin synthase; Prov 30.4 1E+02 0.0022 29.7 5.5 57 81-140 127-185 (323)
189 PRK09389 (R)-citramalate synth 30.4 1.7E+02 0.0037 30.5 7.3 106 82-191 75-199 (488)
190 cd06564 GH20_DspB_LnbB-like Gl 29.9 5.2E+02 0.011 25.0 10.4 63 82-150 19-109 (326)
191 cd00019 AP2Ec AP endonuclease 29.7 2.3E+02 0.005 26.4 7.7 54 80-138 10-64 (279)
192 cd06595 GH31_xylosidase_XylS-l 29.4 1.8E+02 0.0039 27.8 6.9 106 84-192 29-163 (292)
193 cd07938 DRE_TIM_HMGL 3-hydroxy 29.3 4.9E+02 0.011 24.7 9.8 79 81-178 115-193 (274)
194 PF10566 Glyco_hydro_97: Glyco 29.2 1E+02 0.0022 29.7 5.0 61 82-153 108-168 (273)
195 PRK06256 biotin synthase; Vali 29.2 95 0.0021 30.2 5.1 57 81-140 150-207 (336)
196 PRK05692 hydroxymethylglutaryl 28.6 4.3E+02 0.0092 25.3 9.3 81 79-178 119-199 (287)
197 TIGR02026 BchE magnesium-proto 28.5 1E+02 0.0023 31.9 5.5 61 82-146 286-348 (497)
198 PRK08207 coproporphyrinogen II 28.3 64 0.0014 33.6 3.8 86 83-185 269-358 (488)
199 TIGR00674 dapA dihydrodipicoli 28.3 2.9E+02 0.0063 26.2 8.1 67 111-191 13-79 (285)
200 PF01261 AP_endonuc_2: Xylose 28.2 41 0.00089 29.3 2.1 61 79-139 70-131 (213)
201 TIGR00423 radical SAM domain p 28.2 1.9E+02 0.0041 27.8 6.9 54 82-141 106-166 (309)
202 PRK13523 NADPH dehydrogenase N 27.8 5.9E+02 0.013 25.0 12.2 137 111-271 72-229 (337)
203 PF07555 NAGidase: beta-N-acet 27.7 1.9E+02 0.0041 28.2 6.7 84 84-185 19-110 (306)
204 cd06570 GH20_chitobiase-like_1 27.3 2.3E+02 0.005 27.6 7.3 62 82-149 20-94 (311)
205 PRK09432 metF 5,10-methylenete 27.1 1.9E+02 0.0041 27.9 6.7 74 119-192 188-283 (296)
206 PF04055 Radical_SAM: Radical 27.0 84 0.0018 25.8 3.8 52 83-136 90-143 (166)
207 TIGR00542 hxl6Piso_put hexulos 26.5 3.7E+02 0.0079 25.1 8.5 55 80-138 16-70 (279)
208 PF02057 Glyco_hydro_59: Glyco 26.5 1.3E+02 0.0027 32.7 5.6 65 124-191 116-185 (669)
209 PF09713 A_thal_3526: Plant pr 26.5 36 0.00077 24.5 1.1 36 123-169 16-52 (54)
210 PRK13210 putative L-xylulose 5 26.3 94 0.002 29.0 4.3 60 80-141 94-154 (284)
211 PF13812 PPR_3: Pentatricopept 26.1 63 0.0014 19.3 2.2 15 122-136 20-34 (34)
212 TIGR01589 A_thal_3526 uncharac 26.1 52 0.0011 23.9 1.9 36 123-169 19-55 (57)
213 PRK11572 copper homeostasis pr 26.0 1.1E+02 0.0024 29.0 4.6 42 79-129 72-113 (248)
214 PF11790 Glyco_hydro_cc: Glyco 25.9 54 0.0012 30.5 2.6 15 177-191 63-77 (239)
215 PF13200 DUF4015: Putative gly 25.8 2E+02 0.0043 28.3 6.5 95 80-175 13-136 (316)
216 PF03932 CutC: CutC family; I 25.6 1E+02 0.0022 28.2 4.2 50 79-142 71-120 (201)
217 cd02930 DCR_FMN 2,4-dienoyl-Co 25.1 6.6E+02 0.014 24.6 12.8 144 106-271 63-226 (353)
218 PF04028 DUF374: Domain of unk 25.0 2.1E+02 0.0046 21.7 5.2 40 87-140 27-66 (74)
219 PF10107 Endonuc_Holl: Endonuc 24.9 47 0.001 29.1 1.8 44 287-332 71-114 (156)
220 COG1649 Uncharacterized protei 24.5 3E+02 0.0065 28.1 7.7 98 80-177 64-199 (418)
221 cd01335 Radical_SAM Radical SA 24.2 1.1E+02 0.0023 26.0 4.0 57 82-141 87-146 (204)
222 TIGR01856 hisJ_fam histidinol 24.1 2.2E+02 0.0047 26.5 6.3 59 121-181 16-77 (253)
223 PRK10658 putative alpha-glucos 23.9 4.7E+02 0.01 28.4 9.5 103 86-190 289-420 (665)
224 PF14417 MEDS: MEDS: MEthanoge 23.8 1.8E+02 0.0039 25.8 5.5 58 79-145 104-163 (191)
225 PRK10426 alpha-glucosidase; Pr 23.8 6.7E+02 0.014 27.1 10.6 106 82-189 223-364 (635)
226 cd06562 GH20_HexA_HexB-like Be 23.4 2.3E+02 0.0049 28.0 6.6 63 82-150 20-97 (348)
227 PRK08508 biotin synthase; Prov 23.4 1.8E+02 0.0039 27.7 5.7 56 82-140 101-157 (279)
228 cd00950 DHDPS Dihydrodipicolin 23.3 3.7E+02 0.008 25.3 7.8 66 111-190 15-80 (284)
229 PRK13210 putative L-xylulose 5 23.3 4.9E+02 0.011 24.1 8.6 54 81-138 17-70 (284)
230 PLN02229 alpha-galactosidase 23.0 2.1E+02 0.0046 29.3 6.3 50 89-138 94-146 (427)
231 PRK13209 L-xylulose 5-phosphat 22.9 5E+02 0.011 24.1 8.7 54 81-138 22-75 (283)
232 TIGR00587 nfo apurinic endonuc 22.8 2.2E+02 0.0047 26.9 6.1 56 82-142 13-68 (274)
233 PF11153 DUF2931: Protein of u 22.6 90 0.0019 28.5 3.3 36 2-43 1-37 (216)
234 PF01261 AP_endonuc_2: Xylose 22.6 1.8E+02 0.004 25.1 5.3 45 86-138 1-45 (213)
235 PRK13209 L-xylulose 5-phosphat 22.3 1.1E+02 0.0024 28.6 4.0 56 80-140 99-158 (283)
236 COG5016 Pyruvate/oxaloacetate 22.2 3.7E+02 0.008 27.6 7.6 56 78-146 91-151 (472)
237 KOG0696 Serine/threonine prote 22.1 1.8E+02 0.004 30.0 5.5 116 219-337 555-680 (683)
238 PRK00694 4-hydroxy-3-methylbut 22.0 2.3E+02 0.005 30.2 6.4 54 120-174 145-198 (606)
239 PRK13398 3-deoxy-7-phosphohept 21.9 2.8E+02 0.006 26.4 6.6 73 75-150 36-108 (266)
240 TIGR03699 mena_SCO4550 menaqui 21.9 1.3E+02 0.0027 29.4 4.4 53 82-140 142-201 (340)
241 PRK05474 xylose isomerase; Pro 21.8 5.1E+02 0.011 26.6 8.6 71 83-160 82-157 (437)
242 cd06563 GH20_chitobiase-like T 21.8 2.4E+02 0.0053 27.8 6.4 62 82-149 20-112 (357)
243 smart00052 EAL Putative diguan 21.7 1.9E+02 0.0042 25.7 5.4 62 73-139 148-209 (241)
244 PF02055 Glyco_hydro_30: O-Gly 21.7 1E+02 0.0022 32.2 3.8 100 90-191 110-235 (496)
245 cd00408 DHDPS-like Dihydrodipi 21.7 4.8E+02 0.01 24.4 8.2 67 111-191 12-78 (281)
246 TIGR02102 pullulan_Gpos pullul 21.6 2.1E+02 0.0045 33.1 6.4 61 79-141 479-576 (1111)
247 PRK00125 pyrF orotidine 5'-pho 21.5 98 0.0021 29.8 3.4 44 100-148 58-101 (278)
248 PLN02923 xylose isomerase 20.9 9.4E+02 0.02 24.9 10.9 101 87-201 78-196 (478)
249 PRK02048 4-hydroxy-3-methylbut 20.9 2.8E+02 0.006 29.8 6.7 55 120-175 141-195 (611)
250 PF07071 DUF1341: Protein of u 20.8 2.4E+02 0.0053 26.0 5.5 47 79-136 134-180 (218)
251 cd01948 EAL EAL domain. This d 20.5 1.8E+02 0.0039 25.9 4.9 63 72-139 146-208 (240)
252 TIGR00419 tim triosephosphate 20.5 2.4E+02 0.0051 25.8 5.6 43 87-140 75-117 (205)
253 COG3280 TreY Maltooligosyl tre 20.4 2E+02 0.0044 31.7 5.7 62 83-149 22-93 (889)
254 cd06594 GH31_glucosidase_YihQ 20.2 7.3E+02 0.016 24.0 9.3 69 121-190 72-168 (317)
255 PRK13347 coproporphyrinogen II 20.1 2.3E+02 0.005 29.0 6.0 71 76-147 215-293 (453)
256 cd08576 GDPD_like_SMaseD_PLD G 20.0 7.7E+02 0.017 23.6 9.9 103 83-191 10-126 (265)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-98 Score=744.95 Aligned_cols=356 Identities=56% Similarity=0.983 Sum_probs=323.9
Q ss_pred ChhhHH-HHHHHHHHHHhhhh---cc---cccccCCCCCCCeeeeeechhhhcCCcCCCCCCCccccccccc-C-cc--C
Q 018009 1 MMLRLS-FLLMYLLNLATSAL---TA---VEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-G-NV--H 69 (362)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~---~~---~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~-~~--~ 69 (362)
|+.+++ +++++++.++++.. +. +.+++..||++|+||+||||||+|||.++|||++|+||.|++. + ++ .
T Consensus 1 m~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~ 80 (524)
T KOG0626|consen 1 MPLKGYSLLLLLLVFSWLSAYKSSVCPKTTKFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDG 80 (524)
T ss_pred CchHHHHHHHHHHHHHhhhccccccCcccCcccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccC
Confidence 455544 33444444555543 11 3466889999999999999999999999999999999999986 3 43 5
Q ss_pred CCCCcCCccccCcHHHHHHHHHcCCCeeeecccccccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcH
Q 018009 70 GTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ 147 (362)
Q Consensus 70 ~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~--g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 147 (362)
.++++|||+||+|+|||+||++||+++|||||+||||+|.|+ +.+|++|+++|+++|++|+++||+|+|||+|||+|+
T Consensus 81 ~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq 160 (524)
T KOG0626|consen 81 SNGDVAVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQ 160 (524)
T ss_pred CCCCeechhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCH
Confidence 678999999999999999999999999999999999999997 679999999999999999999999999999999999
Q ss_pred hHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCcccccccccCCCCCCCCCCc-cccCCCCCCChhhHHH
Q 018009 148 ALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSI-NHCSRGNSSTEPYITV 226 (362)
Q Consensus 148 ~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~-~~~~~~~~~~~~~~a~ 226 (362)
+|+++||||+|+++++.|.+||+.||++|||+||+|+|+|||++++..||..|..|||+++.. .+|..+++.++.|.|.
T Consensus 161 ~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~ 240 (524)
T KOG0626|consen 161 ALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVA 240 (524)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHH
Confidence 999999999999999999999999999999999999999999999999999999999998764 6899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCceEEEeeecCccccCCCcHHHHHHHHHHHhhhccccccccccccCChhhHHhhccCC
Q 018009 227 HHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRL 306 (362)
Q Consensus 227 hnlllAHA~Av~~~r~~~p~~~~gkIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~~ 306 (362)
|||++|||+||+++|++++..|+|+||+++...|+.|.+++++|.+||+|+..|..+|+++|++.|+||+.|++.+++||
T Consensus 241 HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rL 320 (524)
T KOG0626|consen 241 HNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRL 320 (524)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccC
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhcCCCcEEEEccCccceeccCCCCCccCCCCCcCCCceEE
Q 018009 307 PAFSDRESKQVKGSADFLGVINYYIVYVKDNPSSLNKKLRDWNADSATEI 356 (362)
Q Consensus 307 p~~t~~D~e~ik~~~DFiGiNYY~s~~v~~~~~~~~~~~~~~~~~~~~~~ 356 (362)
|+||++|.+++||+.||+|||||++.+|+.......+..+.+..|..+..
T Consensus 321 P~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~ 370 (524)
T KOG0626|consen 321 PKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDW 370 (524)
T ss_pred CCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceee
Confidence 99999999999999999999999999999876544455666777765443
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=4.5e-94 Score=731.14 Aligned_cols=332 Identities=68% Similarity=1.222 Sum_probs=303.8
Q ss_pred HHHHHHHHHHHhhhhcccccccCCCCCCCeeeeeechhhhcCCcCCCCCCCcccccccccCccC-CCCCcCCccccCcHH
Q 018009 6 SFLLMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVH-GTGDIACDGYHKYKE 84 (362)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~-~~~~~a~d~~~~~~e 84 (362)
++..+-||++++...++....+.+||++|+||+||||||+||++++||||+|+||.+.+.+..+ .++++||||||||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~E 86 (497)
T PLN02998 7 SLMFLPLLALALTAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKE 86 (497)
T ss_pred chhHHHHHHhcccccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHH
Confidence 3445557888888888877888899999999999999999999999999999999998754222 477889999999999
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHH
Q 018009 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (362)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~ 164 (362)
||+|||+||+++|||||+||||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.
T Consensus 87 Di~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~ 166 (497)
T PLN02998 87 DVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRD 166 (497)
T ss_pred HHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHHHhCCCceEEEEecCCCcccccccccCCCCCCCCCCc--cccCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 018009 165 FTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSI--NHCSRGNSSTEPYITVHHVLLAHASVARLYRK 242 (362)
Q Consensus 165 f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~--~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~ 242 (362)
|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+... ..|..+++.++.+|++||+++|||+||+++|+
T Consensus 167 F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~ 246 (497)
T PLN02998 167 FTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQ 246 (497)
T ss_pred HHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999964311 02444444566899999999999999999999
Q ss_pred HccCCCCceEEEeeecCccccCCCcHHHHHHHHHHHhhhccccccccccccCChhhHHhhccCCCCCCHHHHHHhcCCCc
Q 018009 243 KYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSAD 322 (362)
Q Consensus 243 ~~p~~~~gkIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~~p~~t~~D~e~ik~~~D 322 (362)
+++..++++||++++..++||.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.++++|+++|++++|
T Consensus 247 ~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~D 326 (497)
T PLN02998 247 QYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFD 326 (497)
T ss_pred hhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCC
Confidence 76545678999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred EEEEccCccceeccC
Q 018009 323 FLGVINYYIVYVKDN 337 (362)
Q Consensus 323 FiGiNYY~s~~v~~~ 337 (362)
|||||||+|.+|+..
T Consensus 327 FlGiNyYts~~v~~~ 341 (497)
T PLN02998 327 FVGVINYMALYVKDN 341 (497)
T ss_pred EEEEchhcCcccccC
Confidence 999999999999763
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.3e-93 Score=728.67 Aligned_cols=336 Identities=64% Similarity=1.133 Sum_probs=303.1
Q ss_pred ChhhHHHHHHHHHHHHhhhhcccccccCCCCCCCeeeeeechhhhcCCcCCCCCCCcccccccccCccCCCCCcCCcccc
Q 018009 1 MMLRLSFLLMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYH 80 (362)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~~~ 80 (362)
|-+-|||+...||-..++-+.+-.+.+.+||++|+||+||||||+||++++||||+|+||.+.+.+. +.++++||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~-~~~~~~a~D~Yh 79 (503)
T PLN02849 1 MELILSLFTIFLLLALSSGKCSSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN-MSNGDIACDGYH 79 (503)
T ss_pred CchHHHHHHHHHHHhcccccccCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC-CCCCCccccHHH
Confidence 3345666666665555556667678889999999999999999999999999999999999987532 357889999999
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCch
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 160 (362)
||+|||+|||+||+++|||||+|+||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|++
T Consensus 80 rY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~ 159 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRR 159 (503)
T ss_pred hHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCch
Confidence 99999999999999999999999999999889999999999999999999999999999999999999998899999999
Q ss_pred hHHHHHHHHHHHHHHhCCCceEEEEecCCCcccccccccCCCCCCCCCC-ccccCCCCCCChhhHHHHHHHHHHHHHHHH
Q 018009 161 IVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSS-INHCSRGNSSTEPYITVHHVLLAHASVARL 239 (362)
Q Consensus 161 ~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~-~~~~~~~~~~~~~~~a~hnlllAHA~Av~~ 239 (362)
+++.|++||+.|+++|||+|++|+|||||++++..||..|.+|||.... ...|..+++.++.++++||+++|||+||++
T Consensus 160 ~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~ 239 (503)
T PLN02849 160 IIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRL 239 (503)
T ss_pred HHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996431 112333344456899999999999999999
Q ss_pred HHHHccCCCCceEEEeeecCccccCCCcHHHHHHHHHHHhhhccccccccccccCChhhHHhhccCCCCCCHHHHHHhcC
Q 018009 240 YRKKYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKG 319 (362)
Q Consensus 240 ~r~~~p~~~~gkIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~~p~~t~~D~e~ik~ 319 (362)
+|++....++++||++++..++||.+++|+|++||++++++.++||+||+++|+||+.|++.++.++|.++++|+++|++
T Consensus 240 ~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~ 319 (503)
T PLN02849 240 YKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKG 319 (503)
T ss_pred HHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcC
Confidence 99975434578999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred CCcEEEEccCccceeccC
Q 018009 320 SADFLGVINYYIVYVKDN 337 (362)
Q Consensus 320 ~~DFiGiNYY~s~~v~~~ 337 (362)
++||||||||+|.+|+..
T Consensus 320 ~~DFlGiNyYt~~~v~~~ 337 (503)
T PLN02849 320 SSDFIGVIHYLAASVTNI 337 (503)
T ss_pred CCCEEEEeccchhhcccC
Confidence 999999999999999753
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=3.7e-92 Score=718.20 Aligned_cols=311 Identities=65% Similarity=1.125 Sum_probs=285.8
Q ss_pred cccCCCCCCCeeeeeechhhhcCCcCCCCCCCcccccccccCccCCCCCcCCccccCcHHHHHHHHHcCCCeeeeccccc
Q 018009 25 YSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWS 104 (362)
Q Consensus 25 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ 104 (362)
+.+.+||++|+||+||||||+||++++||||+|+||.+.+.. .+.++++||||||||+|||+|||+||+++|||||+||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~-~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWs 101 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCY-NGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWS 101 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeecc-CCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHh
Confidence 556789999999999999999999999999999999988631 1357889999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceEEE
Q 018009 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWT 184 (362)
Q Consensus 105 ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~ 184 (362)
||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|++|+
T Consensus 102 RI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~Wi 181 (504)
T PLN02814 102 RLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWT 181 (504)
T ss_pred hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEE
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred EecCCCcccccccccCCCCCCCCCCc--cccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccCCCCceEEEeeecCccc
Q 018009 185 TVNEPNAFANLGYDYGIAPPQRCSSI--NHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLL 262 (362)
Q Consensus 185 t~NEp~~~~~~gy~~g~~~Pg~~~~~--~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~~~~gkIG~~~~~~~~y 262 (362)
|||||++++..||..|.. ||.+... ..|..+++.++.+|++||+++|||+||+++|+++...++++||++++..++|
T Consensus 182 T~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~ 260 (504)
T PLN02814 182 TINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLS 260 (504)
T ss_pred eccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceee
Confidence 999999999999998874 7754320 1243334445789999999999999999999975545678999999999999
Q ss_pred cCCCcHHHHHHHHHHHhhhccccccccccccCChhhHHhhccCCCCCCHHHHHHhcCCCcEEEEccCccceeccC
Q 018009 263 PLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDN 337 (362)
Q Consensus 263 P~s~~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~~p~~t~~D~e~ik~~~DFiGiNYY~s~~v~~~ 337 (362)
|++++|+|+.||++++++.++||+||+++|+||+.|++.+++++|.++++|+++|++++||||||||+|.+|+..
T Consensus 261 P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~ 335 (504)
T PLN02814 261 PYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNR 335 (504)
T ss_pred cCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccC
Confidence 999999999999999999999999999999999999999998899999999999999999999999999999753
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-91 Score=689.64 Aligned_cols=298 Identities=42% Similarity=0.763 Sum_probs=278.7
Q ss_pred CCCCCCCeeeeeechhhhcCCcCCCCCCCccccccccc---Ccc--CCCCCcCCccccCcHHHHHHHHHcCCCeeeeccc
Q 018009 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA---GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSIS 102 (362)
Q Consensus 28 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~---~~~--~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~ 102 (362)
.+||++||||+||||+|+||++++||||+|+||+|.+. ++. +..++.|+||||||+|||+||||||+++||+||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 57999999999999999999999999999999999983 233 5788999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCce
Q 018009 103 WSRLIPNGRG-PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVS 181 (362)
Q Consensus 103 W~ri~P~g~g-~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~ 181 (362)
||||+|+|++ .+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.||+++++|++||++|++||+|+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999866 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCcccccccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccCCCCceEEEeeecCcc
Q 018009 182 YWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGL 261 (362)
Q Consensus 182 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~~~~gkIG~~~~~~~~ 261 (362)
+|+||||||+++..||+.|.+||+..+ .+.++||+||+++|||+|++++|++.+. .+||||++..+.
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~----------~~~~~qa~hh~~lA~A~avk~~~~~~~~---~kIG~~~~~~p~ 228 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD----------PKAAYQVAHHMLLAHALAVKAIKKINPK---GKVGIILNLTPA 228 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC----------HHHHHHHHHHHHHHHHHHHHHHHhhCCc---CceEEEeccCcC
Confidence 999999999999999999999998654 2578999999999999999999998763 279999999999
Q ss_pred ccCCCcHHHHHHHHHHHhhhccccccccccccCChhhHHhhccC--CCCCCHHHHHHhcC-CCcEEEEccCc-cceeccC
Q 018009 262 LPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKG-SADFLGVINYY-IVYVKDN 337 (362)
Q Consensus 262 yP~s~~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~--~p~~t~~D~e~ik~-~~DFiGiNYY~-s~~v~~~ 337 (362)
||.||+|+|+.||+.++++.+++|+||+++|+||.++.+.+++. +|+++++|+++||. ++||||||||+ +.+++..
T Consensus 229 YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~ 308 (460)
T COG2723 229 YPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAE 308 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeecc
Confidence 99999999999999999999999999999999999999999876 79999999999985 79999999999 4555544
Q ss_pred C
Q 018009 338 P 338 (362)
Q Consensus 338 ~ 338 (362)
+
T Consensus 309 ~ 309 (460)
T COG2723 309 P 309 (460)
T ss_pred C
Confidence 3
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=5.5e-88 Score=683.87 Aligned_cols=294 Identities=33% Similarity=0.597 Sum_probs=271.6
Q ss_pred CCCCCCCeeeeeechhhhcCCcCCCCCCCcccccccccCccCCCCCcCCccccCcHHHHHHHHHcCCCeeeecccccccc
Q 018009 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLI 107 (362)
Q Consensus 28 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~ 107 (362)
.+||++|+||+||||||+||+++++|||+|+||.+.+... ..++++||||||||+|||+|||+||+++|||||+||||+
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~-~~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~ 80 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNY-WYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIF 80 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCC-CCCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhcc
Confidence 4699999999999999999999999999999999876421 236789999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEec
Q 018009 108 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVN 187 (362)
Q Consensus 108 P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~N 187 (362)
|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||+ |++|+|||
T Consensus 81 P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~N 158 (467)
T TIGR01233 81 PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFN 158 (467)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEec
Confidence 998899999999999999999999999999999999999999875 9999999999999999999999998 99999999
Q ss_pred CCCcccccccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccCCCCceEEEeeecCccccCC-C
Q 018009 188 EPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLT-N 266 (362)
Q Consensus 188 Ep~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~~~~gkIG~~~~~~~~yP~s-~ 266 (362)
||++++..||+.|.+|||.+.. .++.+|++||+++|||+||+++|++.+ +++||++++..++||++ +
T Consensus 159 EP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~a~hn~l~AHa~A~~~~~~~~~---~~~IGi~~~~~~~~P~~~~ 226 (467)
T TIGR01233 159 EIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVSHARAVKLYKDKGY---KGEIGVVHALPTKYPYDPE 226 (467)
T ss_pred chhhhhhccchhcccCCCccch---------hHHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEecCceeEECCCC
Confidence 9999999999999999995321 135789999999999999999999743 68999999999999998 8
Q ss_pred cHHHHHHHHHHHhhhccccccccccccCChhhHHhhcc----C--CCCCCHHHHHHh---cCCCcEEEEccCccceecc
Q 018009 267 STEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGS----R--LPAFSDRESKQV---KGSADFLGVINYYIVYVKD 336 (362)
Q Consensus 267 ~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~----~--~p~~t~~D~e~i---k~~~DFiGiNYY~s~~v~~ 336 (362)
+|+|++||++++++.++||+||+++|+||+.|++.++. + .|.++++|+++| ++++||||||||+|.+|+.
T Consensus 227 ~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~ 305 (467)
T TIGR01233 227 NPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQA 305 (467)
T ss_pred CHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeecc
Confidence 99999999999999999999999999999999987753 2 377999999999 4789999999999999975
No 7
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=8.8e-88 Score=683.71 Aligned_cols=297 Identities=31% Similarity=0.513 Sum_probs=269.3
Q ss_pred cCCCCCCCeeeeeechhhhcCCcCCCCCCCccccccccc-Ccc--------------C--CCCCcCCccccCcHHHHHHH
Q 018009 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--------------H--GTGDIACDGYHKYKEDVKLM 89 (362)
Q Consensus 27 ~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~~~--------------~--~~~~~a~d~~~~~~eDi~l~ 89 (362)
..+||++|+||+||||||+||++++||||+|+||.+.+. +++ + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 467999999999999999999999999999999998873 221 0 14788999999999999999
Q ss_pred HHcCCCeeeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHH
Q 018009 90 ADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAY 168 (362)
Q Consensus 90 ~~lG~~~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~y 168 (362)
|+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999984 569999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCceEEEEecCCCcccccccc-cCC-CCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccC
Q 018009 169 ADVCFRQFGDRVSYWTTVNEPNAFANLGYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQD 246 (362)
Q Consensus 169 a~~~~~~~~d~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~ 246 (362)
|+.|+++|||+|++|+|||||++++..||. .|. +|||.. +..+.++++||+++|||+||+++|+..
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~----------~~~~~~~a~h~~llAHa~A~~~~~~~~-- 230 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN----------KEQVKYQAAHHELVASAIATKIAHEVD-- 230 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc----------hhhhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999999999999888886 343 366632 124579999999999999999999864
Q ss_pred CCCceEEEeeecCccccCCCcHHHHHHHHHHHhhhccccccccccccCChhhHHhhccC--CCCCCHHHHHHhc-CCCcE
Q 018009 247 KQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVK-GSADF 323 (362)
Q Consensus 247 ~~~gkIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~--~p~~t~~D~e~ik-~~~DF 323 (362)
++++||++++..++||.+++|+|++||++++. .++||+||+++|+||+.|++.++++ .|.|+++|+++|+ +++||
T Consensus 231 -~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~-~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 231 -PENKVGCMLAAGQYYPNTCHPEDVWAAMKEDR-ENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred -CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHH-HhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 46899999999999999999999999999874 5889999999999999999998753 6789999999996 89999
Q ss_pred EEEccCccceeccC
Q 018009 324 LGVINYYIVYVKDN 337 (362)
Q Consensus 324 iGiNYY~s~~v~~~ 337 (362)
||||||+|.+|+..
T Consensus 309 lGiNyYt~~~v~~~ 322 (478)
T PRK09593 309 ISFSYYSSRVASGD 322 (478)
T ss_pred EEEecccCcccccC
Confidence 99999999999854
No 8
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=9.5e-88 Score=683.29 Aligned_cols=295 Identities=35% Similarity=0.630 Sum_probs=271.9
Q ss_pred CCCCCCCeeeeeechhhhcCCcCCCCCCCcccccccccCccCCCCCcCCccccCcHHHHHHHHHcCCCeeeecccccccc
Q 018009 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLI 107 (362)
Q Consensus 28 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~ 107 (362)
.+||++|+||+||||||+||++++||||+|+||.+.+... ..++++||||||||+|||+|||+||+++|||||+||||+
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~-~~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~ 81 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENY-WFTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIF 81 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCC-CCCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcC
Confidence 4599999999999999999999999999999999987421 137889999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEec
Q 018009 108 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVN 187 (362)
Q Consensus 108 P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~N 187 (362)
|+|+|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |++|+|||
T Consensus 82 P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~N 159 (469)
T PRK13511 82 PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFN 159 (469)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEcc
Confidence 998899999999999999999999999999999999999999975 9999999999999999999999999 99999999
Q ss_pred CCCcccccccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccCCCCceEEEeeecCccccCC-C
Q 018009 188 EPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLT-N 266 (362)
Q Consensus 188 Ep~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~~~~gkIG~~~~~~~~yP~s-~ 266 (362)
||++++..||..|.+|||.+.. .+..++++||+++|||+||+++|++. ++++||++++..+++|.+ +
T Consensus 160 EP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~ 227 (469)
T PRK13511 160 EIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPD 227 (469)
T ss_pred chhhhhhcchhhcccCCCCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCC
Confidence 9999999999999999996421 13578999999999999999999974 468999999999999999 8
Q ss_pred cHHHHHHHHHHHhhhccccccccccccCChhhHHhhc----c-C-CCCCCHHHHHHhcC---CCcEEEEccCccceeccC
Q 018009 267 STEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVG----S-R-LPAFSDRESKQVKG---SADFLGVINYYIVYVKDN 337 (362)
Q Consensus 267 ~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~----~-~-~p~~t~~D~e~ik~---~~DFiGiNYY~s~~v~~~ 337 (362)
+|+|++||++++++.++||+||+++|+||+.|++.++ + . .+.++++|+++|++ ++||||||||+|.+|+..
T Consensus 228 ~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~ 307 (469)
T PRK13511 228 NPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAY 307 (469)
T ss_pred CHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecC
Confidence 9999999999999999999999999999999998764 1 1 34899999999964 589999999999999753
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=7.6e-87 Score=676.56 Aligned_cols=294 Identities=33% Similarity=0.577 Sum_probs=264.0
Q ss_pred CCCCCCeeeeeechhhhcCCcCCCCCCCccccccc---cc--Ccc------CC--CCCcCCccccCcHHHHHHHHHcCCC
Q 018009 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV------HG--TGDIACDGYHKYKEDVKLMADTGLD 95 (362)
Q Consensus 29 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~---~~--~~~------~~--~~~~a~d~~~~~~eDi~l~~~lG~~ 95 (362)
+||++|+||+||||||+||++++||||+|+||.+. +. +++ +. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999988 31 221 11 4688999999999999999999999
Q ss_pred eeeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHH
Q 018009 96 AYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (362)
Q Consensus 96 ~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 174 (362)
+|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||++|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999984 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceEEEEecCCCccccc-----ccc-cCC-CCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccCC
Q 018009 175 QFGDRVSYWTTVNEPNAFANL-----GYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDK 247 (362)
Q Consensus 175 ~~~d~v~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~~ 247 (362)
+|||+|++|+|||||++++.. ||. .|. +|||.. .....+|++||+++|||+|++++|++.+
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~----------~~~~~~~~~h~~llAha~A~~~~~~~~~-- 230 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED----------REQIMYQAAHYELVASALAVKTGHEINP-- 230 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc----------hhHHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999998766 444 333 255531 1234789999999999999999999754
Q ss_pred CCceEEEeeecCccccCCCcHHHHHHHHHHHhhhccccccccccccCChhhHHhhccC--CCCCCHHHHHHh-cCCCcEE
Q 018009 248 QRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQV-KGSADFL 324 (362)
Q Consensus 248 ~~gkIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~--~p~~t~~D~e~i-k~~~DFi 324 (362)
+++||++++..++||.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.++++|+++| ++++|||
T Consensus 231 -~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFl 308 (476)
T PRK09589 231 -DFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYI 308 (476)
T ss_pred -CCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEE
Confidence 57999999999999999999999999998854 679999999999999999999764 478999999999 5899999
Q ss_pred EEccCccceecc
Q 018009 325 GVINYYIVYVKD 336 (362)
Q Consensus 325 GiNYY~s~~v~~ 336 (362)
|||||+|.+|+.
T Consensus 309 GiNyYts~~v~~ 320 (476)
T PRK09589 309 GFSYYMSFATKF 320 (476)
T ss_pred EEecccCccccc
Confidence 999999999975
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=6.8e-88 Score=683.60 Aligned_cols=298 Identities=53% Similarity=0.978 Sum_probs=272.0
Q ss_pred cCCCCCCCeeeeeechhhhcCCcCCCCCCCccccccccc-Ccc--CCCCCcCCccccCcHHHHHHHHHcCCCeeeecccc
Q 018009 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISW 103 (362)
Q Consensus 27 ~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~~~--~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W 103 (362)
+.+||++|+||+|||||||||++++||||+|+||.|++. +++ +.++++||||||||+|||+|||+||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 357999999999999999999999999999999999887 444 56789999999999999999999999999999999
Q ss_pred cccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceE
Q 018009 104 SRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSY 182 (362)
Q Consensus 104 ~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~ 182 (362)
+||+|+| +|.+|++++++|+++|++|+++||+|+|||+|||+|+||++ +|||.|+++++.|++||++|+++|||+|++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999998 89999999999999999999999999999999999999987 799999999999999999999999999999
Q ss_pred EEEecCCCcccccccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccCCCCceEEEeeecCccc
Q 018009 183 WTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLL 262 (362)
Q Consensus 183 w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~~~~gkIG~~~~~~~~y 262 (362)
|+|||||++++..||+.|.+|||..+ ..+.++++||+++|||+|++++|++.+ +++||++++..+++
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~----------~~~~~~~~h~~l~AHa~A~~~~~~~~~---~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDS----------LKAFYQAAHNLLLAHAKAVKAIKEKYP---DGKIGIALNFSPFY 227 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSST----------HHHHHHHHHHHHHHHHHHHHHHHHHTC---TSEEEEEEEEEEEE
T ss_pred EEeccccceeeccccccccccccccc----------cchhhHHHhhHHHHHHHHHHHHhhccc---ceEEeccccccccC
Confidence 99999999999999999999999543 247899999999999999999999874 68999999999999
Q ss_pred cCCCcHHHH-HHHHHHHhhhccccccccccccCChhhHHhhccC--CCCCCHHHHHHhcCCCcEEEEccCccceeccCC
Q 018009 263 PLTNSTEDA-IATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKGSADFLGVINYYIVYVKDNP 338 (362)
Q Consensus 263 P~s~~p~D~-~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~--~p~~t~~D~e~ik~~~DFiGiNYY~s~~v~~~~ 338 (362)
|.+++++|. .||++.+++.++||+||+++|+||..|++.++++ +|.||++|++.|++++||||||||++.+|+..+
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~ 306 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADP 306 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCc
Confidence 999988776 8999999999999999999999999999999987 999999999999999999999999999999876
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=3.4e-86 Score=671.46 Aligned_cols=298 Identities=31% Similarity=0.581 Sum_probs=266.9
Q ss_pred ccCCCCCCCeeeeeechhhhcCCcCCCCCCCccccccc---cc--Ccc------C--CCCCcCCccccCcHHHHHHHHHc
Q 018009 26 SKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV------H--GTGDIACDGYHKYKEDVKLMADT 92 (362)
Q Consensus 26 ~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~---~~--~~~------~--~~~~~a~d~~~~~~eDi~l~~~l 92 (362)
++.+||++|+||+||||||+||++++||||+|+||++. +. +++ + .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999988 31 211 1 25688999999999999999999
Q ss_pred CCCeeeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHH
Q 018009 93 GLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADV 171 (362)
Q Consensus 93 G~~~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~ 171 (362)
|+++|||||+|+||+|+|. |.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999984 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCceEEEEecCCCcc-----ccccccc-CCC-CCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHc
Q 018009 172 CFRQFGDRVSYWTTVNEPNAF-----ANLGYDY-GIA-PPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKY 244 (362)
Q Consensus 172 ~~~~~~d~v~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~ 244 (362)
|+++|||+|++|+|||||+++ +..||.. |.+ ||+.. ...+.+|++||+++|||+||+++|++.
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~----------~~~~~~~~~h~~llAHa~A~~~~~~~~ 231 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN----------PEETMYQVLHHQFVASALAVKAARRIN 231 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc----------hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987 6778874 654 44321 123579999999999999999999975
Q ss_pred cCCCCceEEEeeecCccccCCCcHHHHHHHHHHHhhhccccccccccccCChhhHHhhccCC--CCCCHHHHHHh-cCCC
Q 018009 245 QDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRL--PAFSDRESKQV-KGSA 321 (362)
Q Consensus 245 p~~~~gkIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~~--p~~t~~D~e~i-k~~~ 321 (362)
+ +++||++++..++||.+++|+|++||++++. ...+|+||+++|+||+.|++.++++. |.++++|+++| ++++
T Consensus 232 ~---~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~ 307 (477)
T PRK15014 232 P---EMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTC 307 (477)
T ss_pred C---CCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCC
Confidence 4 6899999999999999999999999998773 23459999999999999999998763 78999999999 5899
Q ss_pred cEEEEccCccceeccC
Q 018009 322 DFLGVINYYIVYVKDN 337 (362)
Q Consensus 322 DFiGiNYY~s~~v~~~ 337 (362)
||||||||+|.+|+..
T Consensus 308 DFlGiNyYt~~~v~~~ 323 (477)
T PRK15014 308 DYLGFSYYMTNAVKAE 323 (477)
T ss_pred CEEEEcceeCeeeccC
Confidence 9999999999999753
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=2.7e-85 Score=663.98 Aligned_cols=295 Identities=31% Similarity=0.522 Sum_probs=269.9
Q ss_pred CCCCCCeeeeeechhhhcCCcCCCCCCCccccccccc-Ccc--------------C--CCCCcCCccccCcHHHHHHHHH
Q 018009 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--------------H--GTGDIACDGYHKYKEDVKLMAD 91 (362)
Q Consensus 29 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~~~--------------~--~~~~~a~d~~~~~~eDi~l~~~ 91 (362)
+||++|+||+||||||+||++++||||+|+||++++. +++ + .++++||||||||+|||++|++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 5999999999999999999999999999999998873 321 1 1468899999999999999999
Q ss_pred cCCCeeeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHH
Q 018009 92 TGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYAD 170 (362)
Q Consensus 92 lG~~~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 170 (362)
||+|+|||||+|+||+|+|. +.+|++++++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999984 56899999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHhCCCceEEEEecCCCcccccccc-cCC-CCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccCCC
Q 018009 171 VCFRQFGDRVSYWTTVNEPNAFANLGYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQ 248 (362)
Q Consensus 171 ~~~~~~~d~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~~~ 248 (362)
.|+++|||+|++|+|||||++++..||. .|. +||+... ....+|++||+++|||+||+++|++.+
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~~--- 229 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ----------DQVKYQAAHHELVASALATKIAHEVNP--- 229 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc----------hHhHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 9999999999999999999999999996 564 4787421 235789999999999999999999754
Q ss_pred CceEEEeeecCccccCCCcHHHHHHHHHHHhhhccccccccccccCChhhHHhhccC--CCCCCHHHHHHhcCCCcEEEE
Q 018009 249 RGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKGSADFLGV 326 (362)
Q Consensus 249 ~gkIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~--~p~~t~~D~e~ik~~~DFiGi 326 (362)
+++||++++..++||.+++|+|++||++++ +.+++|+||+++|+||+.|++.++++ +|.++++|+++|++++|||||
T Consensus 230 ~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGi 308 (474)
T PRK09852 230 QNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSF 308 (474)
T ss_pred CCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEE
Confidence 589999999999999999999999999877 45889999999999999999999764 689999999999999999999
Q ss_pred ccCccceeccC
Q 018009 327 INYYIVYVKDN 337 (362)
Q Consensus 327 NYY~s~~v~~~ 337 (362)
|||+|.+|+..
T Consensus 309 NyYt~~~v~~~ 319 (474)
T PRK09852 309 SYYASRCASAE 319 (474)
T ss_pred ccccCeecccC
Confidence 99999999753
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=3.3e-84 Score=650.81 Aligned_cols=293 Identities=45% Similarity=0.844 Sum_probs=275.3
Q ss_pred CCCCCeeeeeechhhhcCCcCCCCCCCccccccccc-Ccc--CCCCCcCCccccCcHHHHHHHHHcCCCeeeeccccccc
Q 018009 30 FPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRL 106 (362)
Q Consensus 30 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~~~--~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri 106 (362)
||++|+||+||||||+||+++++|||+|+||.+.+. ++. +.++++||||||+|+|||++||++|+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999999874 333 34778999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEe
Q 018009 107 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTV 186 (362)
Q Consensus 107 ~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 186 (362)
+|+|+|.+|++++++|+++|++|+++||+|+|||+|||+|+||+++ |||.++++++.|++||+.|+++|+|+|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9998899999999999999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred cCCCcccccccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccCCCCceEEEeeecCccccCCC
Q 018009 187 NEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTN 266 (362)
Q Consensus 187 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~~~~gkIG~~~~~~~~yP~s~ 266 (362)
|||++++..||..|.+||+.++. ...++++||+++|||+|++++|++.+ +++||++++..++||.++
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~----------~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~~P~~~ 226 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDL----------RAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPVYPASD 226 (427)
T ss_pred cCcceecccchhhccCCCCCccH----------HHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCCC
Confidence 99999999999999889985321 34689999999999999999999765 689999999999999999
Q ss_pred cHHHHHHHHHHHhhhccccccccccccCChhhHHhhccCCCCCCHHHHHHhcCCCcEEEEccCccceeccC
Q 018009 267 STEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDN 337 (362)
Q Consensus 267 ~p~D~~Aa~~~~~~~~~~flDpl~~G~YP~~~~~~l~~~~p~~t~~D~e~ik~~~DFiGiNYY~s~~v~~~ 337 (362)
+|+|+.||++++++.++||+||+++|+||+.|++.++. +|.+|++|++++++++||||||||++.+|+..
T Consensus 227 ~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 227 SPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred CHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 99999999999999999999999999999999999974 69999999999999999999999999999864
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.39 E-value=8.4e-13 Score=131.25 Aligned_cols=108 Identities=24% Similarity=0.458 Sum_probs=87.5
Q ss_pred cCcHHHHHHHHHcCCCeeee-cccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhh-----
Q 018009 80 HKYKEDVKLMADTGLDAYRF-SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY----- 153 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~----- 153 (362)
+.+++|+++|+++|+|++|+ .++|++|||+ +|++| ++.+|++|+.+.++||++++.+.+...|.|+.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46899999999999999997 5799999999 89999 88899999999999999999999999999998654
Q ss_pred ----------CCC-----CCchhHHHHHHHHHHHHHHhCCC--ceEEEEecCCCc
Q 018009 154 ----------GGW-----INRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (362)
Q Consensus 154 ----------gg~-----~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~ 191 (362)
|+. .++...+.+.++++.+++||++. |-.|.+.|||..
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 111 24556778888889999999984 889999999986
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.33 E-value=4.2e-12 Score=119.73 Aligned_cols=109 Identities=22% Similarity=0.353 Sum_probs=90.6
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccc-cCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCC-C
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI-N 158 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~-P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~-~ 158 (362)
..++|++.|+++|+|++|+.|.|..++ |...+.++...++.++++|+.+.++||.+++++|+. |.|.... ++.. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 678999999999999999999998888 453456999999999999999999999999999974 7774322 2333 3
Q ss_pred chhHHHHHHHHHHHHHHhCC--CceEEEEecCCCcc
Q 018009 159 RTIVKDFTAYADVCFRQFGD--RVSYWTTVNEPNAF 192 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d--~v~~w~t~NEp~~~ 192 (362)
....+.|.++++.++++|++ .|..|.++|||...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 44678899999999999954 68899999999964
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.85 E-value=9.6e-09 Score=96.99 Aligned_cols=83 Identities=19% Similarity=0.342 Sum_probs=72.1
Q ss_pred cccccccCCCCCCChhhhHHHHHHHHHHHHcCCee--EEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCC
Q 018009 102 SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP--HVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDR 179 (362)
Q Consensus 102 ~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p--~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~ 179 (362)
.|++++|+ +|.+| ++..|++++.++++||++ ...+.|...|.|+... + .++..+.+.+|++.+++||+++
T Consensus 2 kW~~~ep~-~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 2 KWDSTEPS-RGQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CcccccCC-CCccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCCc
Confidence 69999999 89999 777889999999999995 4456677899998632 2 5677899999999999999999
Q ss_pred ceEEEEecCCCcc
Q 018009 180 VSYWTTVNEPNAF 192 (362)
Q Consensus 180 v~~w~t~NEp~~~ 192 (362)
|..|.++|||...
T Consensus 74 i~~wdV~NE~~~~ 86 (254)
T smart00633 74 IYAWDVVNEALHD 86 (254)
T ss_pred ceEEEEeeecccC
Confidence 9999999999863
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=5.7e-08 Score=102.21 Aligned_cols=114 Identities=20% Similarity=0.371 Sum_probs=91.1
Q ss_pred CcHHHHHHHHHcCCCeeeec-ccccccccCCCCCCChhhhHHHHHH-HHHHHHcCCeeEEee-cCCCCcHhHHhhh----
Q 018009 81 KYKEDVKLMADTGLDAYRFS-ISWSRLIPNGRGPVNPKGLQYYNNL-INELISYGIQPHVTL-HHFDLPQALEDEY---- 153 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~s-i~W~ri~P~g~g~~n~~~~~~y~~~-i~~l~~~Gi~p~vtL-~H~~~P~~l~~~~---- 153 (362)
.+++|++.||++|+|++|++ ++|++++|+ .|.+| +.+.|.. ++.+.+.||..++.. .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fd---f~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFD---FTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccC---cccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 46789999999999999995 699999999 89999 5577787 999999999999998 7789999998765
Q ss_pred -----------CCCCCchhH-HHHHHHHHH----HHHH-hCC--CceEEEEecCCCc-ccccccc
Q 018009 154 -----------GGWINRTIV-KDFTAYADV----CFRQ-FGD--RVSYWTTVNEPNA-FANLGYD 198 (362)
Q Consensus 154 -----------gg~~~~~~~-~~f~~ya~~----~~~~-~~d--~v~~w~t~NEp~~-~~~~gy~ 198 (362)
|+|.+-+.. ..|.+|++. +.+| |++ .|..|.+-||-.. .++..|.
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~ 171 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYC 171 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCcccccccc
Confidence 566544332 246777766 7777 776 4899999998776 4444443
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=5.7e-06 Score=83.44 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhh--h-CCC
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE--Y-GGW 156 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g---~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~--~-gg~ 156 (362)
++|+..||+.|+|++|+.+.|-.+.+.+ +...+...+...+++|+..++.||.+++++|++.-+.-=.+. + +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866655542 223324455699999999999999999999986622211111 0 112
Q ss_pred C-CchhHHHHHHHHHHHHHHhCCC--ceEEEEecCCCc
Q 018009 157 I-NRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (362)
Q Consensus 157 ~-~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~ 191 (362)
. ..++++++.+-++.++.||++. |--..++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3457899999999999999973 555689999995
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.22 E-value=5.3e-06 Score=85.54 Aligned_cols=106 Identities=25% Similarity=0.484 Sum_probs=65.7
Q ss_pred cHHHHHHHH-HcCCCeeeec--c--ccccccc-CCCC--CCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhh-
Q 018009 82 YKEDVKLMA-DTGLDAYRFS--I--SWSRLIP-NGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE- 152 (362)
Q Consensus 82 ~~eDi~l~~-~lG~~~~R~s--i--~W~ri~P-~g~g--~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~- 152 (362)
+++.+..++ ++|++.+||- + +..-..+ ++.| .+| +...|+++|.++++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 555666564 9999999986 2 2332322 2233 278 889999999999999999999986 78776432
Q ss_pred -----hCCCC-CchhHHHHHHHHHHHHHHhCC-----Cce--EEEEecCCCcc
Q 018009 153 -----YGGWI-NRTIVKDFTAYADVCFRQFGD-----RVS--YWTTVNEPNAF 192 (362)
Q Consensus 153 -----~gg~~-~~~~~~~f~~ya~~~~~~~~d-----~v~--~w~t~NEp~~~ 192 (362)
+.|+. .++..+.|.++++.+++|+.+ .|. +|++||||+..
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12222 356788898888877776654 354 66999999973
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.16 E-value=5.8e-05 Score=73.94 Aligned_cols=102 Identities=20% Similarity=0.344 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecC---CCCcHhHHhhhCCCCC-
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH---FDLPQALEDEYGGWIN- 158 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H---~~~P~~l~~~~gg~~~- 158 (362)
++=+++||+.|+|++|+-+ | ..|...|..| ++.-.++..+.+++||+.+|++|- |.=|.--. .-..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~-~P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN-KPAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-CCccCCCC
Confidence 4457999999999999988 4 4566226666 778889999999999999999984 23332211 1256877
Q ss_pred --chhHHHHHHHHHHHHHHhCC---CceEEEEecCCCc
Q 018009 159 --RTIVKDFTAYADVCFRQFGD---RVSYWTTVNEPNA 191 (362)
Q Consensus 159 --~~~~~~f~~ya~~~~~~~~d---~v~~w~t~NEp~~ 191 (362)
.+..+.-.+|.+.+.+.+++ .++++.+=||.+.
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINN 137 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccc
Confidence 56788899999999888875 5788899999884
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.04 E-value=2.9e-05 Score=75.87 Aligned_cols=123 Identities=16% Similarity=0.257 Sum_probs=88.0
Q ss_pred CCCCCeeeeeechhhhcCCcCCCCCCCcccccccccCccCCCCCcCCccccCcHHHHHHHHHcCCCeeee--cccccccc
Q 018009 30 FPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRF--SISWSRLI 107 (362)
Q Consensus 30 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~--si~W~ri~ 107 (362)
.+.+|.+|+|.++.++++.. ..+.+-.--+|.+-. ...|..++
T Consensus 6 ~~~~f~~G~av~~~~~~~~~-----------------------------------~~~~~~~~~Fn~~t~eN~~Kw~~~e 50 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP-----------------------------------RYRELFAKHFNSVTPENEMKWGSIE 50 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH-----------------------------------HHHHHHHHH-SEEEESSTTSHHHHE
T ss_pred HhccCCEEEEechhHcCCcH-----------------------------------HHHHHHHHhCCeeeeccccchhhhc
Confidence 35789999999999888631 011122224555555 47899999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCeeE--EeecCCCCcHhHHhhhCCCCCch---hHHHHHHHHHHHHHHhC--CCc
Q 018009 108 PNGRGPVNPKGLQYYNNLINELISYGIQPH--VTLHHFDLPQALEDEYGGWINRT---IVKDFTAYADVCFRQFG--DRV 180 (362)
Q Consensus 108 P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~--vtL~H~~~P~~l~~~~gg~~~~~---~~~~f~~ya~~~~~~~~--d~v 180 (362)
|. +|.+| ++..|++++-++++||++- .-+.|--.|.|+... .-+...+ ..+...+|.+.+++||+ ++|
T Consensus 51 ~~-~g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i 125 (320)
T PF00331_consen 51 PE-PGRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRI 125 (320)
T ss_dssp SB-TTBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTE
T ss_pred CC-CCccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccce
Confidence 99 89999 6778999999999999987 334455789999753 1233333 78899999999999999 489
Q ss_pred eEEEEecCCCcc
Q 018009 181 SYWTTVNEPNAF 192 (362)
Q Consensus 181 ~~w~t~NEp~~~ 192 (362)
..|=+.|||-.-
T Consensus 126 ~~WDVvNE~i~~ 137 (320)
T PF00331_consen 126 YAWDVVNEAIDD 137 (320)
T ss_dssp SEEEEEES-B-T
T ss_pred EEEEEeeecccC
Confidence 999999999753
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.73 E-value=0.00013 Score=71.37 Aligned_cols=110 Identities=12% Similarity=0.153 Sum_probs=75.0
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec--------CCCCcHhHHh
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALED 151 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~--------H~~~P~~l~~ 151 (362)
..|++-++.||++|+|++-+-|.|..-||. +|++|.++..=.+++|+.++++||.+++-.- .-++|.||..
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 457888999999999999999999999999 8999999988899999999999999776532 2359999986
Q ss_pred hhCCC---CCchhHHHHHHHHHHHHHHhCC-------CceEEEEecCCC
Q 018009 152 EYGGW---INRTIVKDFTAYADVCFRQFGD-------RVSYWTTVNEPN 190 (362)
Q Consensus 152 ~~gg~---~~~~~~~~f~~ya~~~~~~~~d-------~v~~w~t~NEp~ 190 (362)
+.+.. .++...+...+|.+.+++..++ -|-...+=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 53332 2345666667777777776654 245566666644
No 23
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.56 E-value=0.00015 Score=72.16 Aligned_cols=99 Identities=13% Similarity=0.311 Sum_probs=76.1
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec------------CCCCc
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH------------HFDLP 146 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~------------H~~~P 146 (362)
++..+..++.+|++|++.+-+.+=|.-+|+.+++++| |+-|+++++.+++.|++..+.|. +..+|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 4477899999999999999999999999999899999 77799999999999999888763 34699
Q ss_pred HhHHhhh-----------CC--------CCCchhHHHHHHHHHHHHHHhCCCc
Q 018009 147 QALEDEY-----------GG--------WINRTIVKDFTAYADVCFRQFGDRV 180 (362)
Q Consensus 147 ~~l~~~~-----------gg--------~~~~~~~~~f~~ya~~~~~~~~d~v 180 (362)
.|+.++. |. |....+++.|.+|-+...++|.+..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9987531 22 3333448999999999888887654
No 24
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.009 Score=57.19 Aligned_cols=137 Identities=18% Similarity=0.361 Sum_probs=85.1
Q ss_pred ccCCCCCCCeeeeeech-hhhcCCcCCCCCCCcccccccccCccCCCCCcCCccccCcHHHHHHHHHcCCCeeeeccccc
Q 018009 26 SKNDFPPGFLFGASTSA-YQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWS 104 (362)
Q Consensus 26 ~~~~fp~~FlwG~atsa-~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ 104 (362)
+--..|++|+-|+-.|. .|+|-. ++| |... ++ .-++-++.+|+.|+|.+|+-| |-
T Consensus 31 ~v~~~~~dFikGaDis~l~~lE~~---Gvk-------f~d~-----ng--------~~qD~~~iLK~~GvNyvRlRv-wn 86 (403)
T COG3867 31 PVENSPNDFIKGADISSLIELENS---GVK-------FFDT-----NG--------VRQDALQILKNHGVNYVRLRV-WN 86 (403)
T ss_pred eccCChHHhhccccHHHHHHHHHc---Cce-------EEcc-----CC--------hHHHHHHHHHHcCcCeEEEEE-ec
Confidence 33457999999987654 567632 111 1111 11 013447999999999999976 32
Q ss_pred cccc-CCC----CCCChhhhHHHHHHHHHHHHcCCeeEEeec---CCCCcHhHHhhhCCCCCc---hhHHHHHHHHHHHH
Q 018009 105 RLIP-NGR----GPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLPQALEDEYGGWINR---TIVKDFTAYADVCF 173 (362)
Q Consensus 105 ri~P-~g~----g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~---H~~~P~~l~~~~gg~~~~---~~~~~f~~ya~~~~ 173 (362)
.=.. +|. |.=| ++.--++-.+.+..||+++++.| ||.=|.-- ++-..|.+- ..-.+--+|.+.++
T Consensus 87 dP~dsngn~yggGnnD---~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk~~l 162 (403)
T COG3867 87 DPYDSNGNGYGGGNND---LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTKYVL 162 (403)
T ss_pred CCccCCCCccCCCcch---HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHHHHH
Confidence 2111 121 2223 55667788899999999999998 46556432 222457542 34456667777777
Q ss_pred HHhCC---CceEEEEecCCC
Q 018009 174 RQFGD---RVSYWTTVNEPN 190 (362)
Q Consensus 174 ~~~~d---~v~~w~t~NEp~ 190 (362)
+++++ ..+.-.+=||-+
T Consensus 163 ~~m~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 163 TTMKKEGILPDMVQVGNETN 182 (403)
T ss_pred HHHHHcCCCccceEeccccC
Confidence 77765 456667889977
No 25
>PLN02803 beta-amylase
Probab=97.44 E-value=0.00047 Score=70.40 Aligned_cols=107 Identities=18% Similarity=0.318 Sum_probs=83.0
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec-C-----------CCCc
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLP 146 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~~P 146 (362)
-...+..++.+|++|++.+-+.+=|--+|+++++++| |.-|+++++.+++.|++..+.|. | ..+|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 3457889999999999999999999999999999999 66799999999999999877765 3 3599
Q ss_pred HhHHhhh-----------CCC----------------CCchhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 147 QALEDEY-----------GGW----------------INRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 147 ~~l~~~~-----------gg~----------------~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
.|+.+.. .|. ..+.-++.|.+|-+-.-++|.+... -|+.|..
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~ 251 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQ 251 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 9987531 121 2233457888888888888777553 3444443
No 26
>PLN02161 beta-amylase
Probab=97.43 E-value=0.00046 Score=70.17 Aligned_cols=110 Identities=16% Similarity=0.251 Sum_probs=85.7
Q ss_pred CccccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec-CC-----------
Q 018009 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-HF----------- 143 (362)
Q Consensus 76 ~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H~----------- 143 (362)
..+....+..++.+|.+|++.+-+.+=|--+|+++++++| |.-|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 4566678889999999999999999999999999999999 67799999999999999877765 32
Q ss_pred CCcHhHHhhh-----------CCC----------------CCchhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 144 DLPQALEDEY-----------GGW----------------INRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 144 ~~P~~l~~~~-----------gg~----------------~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
.+|.|+.+.. .|. ..+..++.|.+|-+-..++|.+... -|+.|..
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~ 261 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEIS 261 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 4999987520 222 2233458899998888888877553 2444443
No 27
>PLN00197 beta-amylase; Provisional
Probab=97.41 E-value=0.00056 Score=70.09 Aligned_cols=107 Identities=19% Similarity=0.315 Sum_probs=83.1
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec-C-----------CCCc
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLP 146 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~~P 146 (362)
-...+..++.+|++|++.+-+.+=|--+|+++++++| |.-|+++++.+++.|++..+.|. | ..+|
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 3457889999999999999999999999999999999 66799999999999999887765 3 3699
Q ss_pred HhHHhhh-----------CCCC----------------CchhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 147 QALEDEY-----------GGWI----------------NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 147 ~~l~~~~-----------gg~~----------------~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
.|+.+.. .|.. .|.-++.|.+|-+-.-++|.+.+. -|+.|..
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~ 271 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQ 271 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEE
Confidence 9987531 1211 223368899998888888777544 2444443
No 28
>PLN02801 beta-amylase
Probab=97.28 E-value=0.0014 Score=66.77 Aligned_cols=101 Identities=19% Similarity=0.366 Sum_probs=80.8
Q ss_pred ccccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec-C-----------CC
Q 018009 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FD 144 (362)
Q Consensus 77 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~ 144 (362)
.+-...+..++.+|++|+..+-+.+=|--+|.++++++| |+-|+++++.++++|++..+.|. | ..
T Consensus 34 ~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 110 (517)
T PLN02801 34 EDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIP 110 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 344457889999999999999999999999999899999 66799999999999999877765 2 36
Q ss_pred CcHhHHhhh-----------CCC----------------CCchhHHHHHHHHHHHHHHhCCCc
Q 018009 145 LPQALEDEY-----------GGW----------------INRTIVKDFTAYADVCFRQFGDRV 180 (362)
Q Consensus 145 ~P~~l~~~~-----------gg~----------------~~~~~~~~f~~ya~~~~~~~~d~v 180 (362)
+|.|+.+.. .|. ..+..++.|.+|-+-.-++|.+..
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999987531 121 223346889999988888887754
No 29
>PLN02905 beta-amylase
Probab=97.19 E-value=0.0019 Score=67.15 Aligned_cols=101 Identities=14% Similarity=0.239 Sum_probs=80.6
Q ss_pred CccccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec-C-----------C
Q 018009 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------F 143 (362)
Q Consensus 76 ~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~ 143 (362)
.......+..++.+|.+|+..+-+.+=|--+|++++++|| |.-|+++++.+++.|++..+.|. | .
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3556668889999999999999999999999999999999 66799999999999999877765 3 3
Q ss_pred CCcHhHHhhh-----------CCCC----------------CchhHHHHHHHHHHHHHHhCCC
Q 018009 144 DLPQALEDEY-----------GGWI----------------NRTIVKDFTAYADVCFRQFGDR 179 (362)
Q Consensus 144 ~~P~~l~~~~-----------gg~~----------------~~~~~~~f~~ya~~~~~~~~d~ 179 (362)
.+|.|+.+.- .|.. .+..++.|.+|-+-+-++|.+.
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6999987521 1211 2334688888888887777664
No 30
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.15 E-value=0.0044 Score=59.76 Aligned_cols=102 Identities=13% Similarity=0.237 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCeeeecc--ccccc-----ccC-----CC------CCCChhhhHHHHHHHHHHHHcCCeeEEeecCCC
Q 018009 83 KEDVKLMADTGLDAYRFSI--SWSRL-----IPN-----GR------GPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si--~W~ri-----~P~-----g~------g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~ 144 (362)
+.=++..|+-|+|.+|+.+ .|... .|. .+ ..+|++-+++.+++|+.+.+.||++.+.+.| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 3447778999999999998 45443 111 01 1379999999999999999999999876654 2
Q ss_pred CcHhHHhhhCCCCC---chhHHHHHHHHHHHHHHhCCC-ceEEEEecCC
Q 018009 145 LPQALEDEYGGWIN---RTIVKDFTAYADVCFRQFGDR-VSYWTTVNEP 189 (362)
Q Consensus 145 ~P~~l~~~~gg~~~---~~~~~~f~~ya~~~~~~~~d~-v~~w~t~NEp 189 (362)
.|. .+ +.|.. .-..+.-.+|.+.|++||+.. =..|++=||-
T Consensus 112 ~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 221 11 45543 335788899999999999998 4779988885
No 31
>PLN02705 beta-amylase
Probab=97.11 E-value=0.0025 Score=66.09 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=79.3
Q ss_pred ccccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec-C-----------CC
Q 018009 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FD 144 (362)
Q Consensus 77 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~ 144 (362)
..-...+..++.+|++|++.+-+.+=|--+|++++++|| |.-|+++++.+++.|++..+.|. | ..
T Consensus 265 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 265 VDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 334558889999999999999999999999999899999 66799999999999999777765 3 35
Q ss_pred CcHhHHhhh-----------CCCC----------------CchhHHHHHHHHHHHHHHhCCC
Q 018009 145 LPQALEDEY-----------GGWI----------------NRTIVKDFTAYADVCFRQFGDR 179 (362)
Q Consensus 145 ~P~~l~~~~-----------gg~~----------------~~~~~~~f~~ya~~~~~~~~d~ 179 (362)
+|.|+.+.- .|.. .+.-++.|.+|.+-+-++|.+.
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999987520 1211 2334588888888887777764
No 32
>PLN03059 beta-galactosidase; Provisional
Probab=97.05 E-value=0.0038 Score=67.58 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=87.4
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec--------CCCCcHhHHh
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALED 151 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~--------H~~~P~~l~~ 151 (362)
+.|++=++.||++|+|++-.=+.|..-||. +|++|.+|..=..++|+.+.+.||-+++-.- .-++|.||..
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 457888999999999999999999999999 8999999999999999999999999887643 4579999975
Q ss_pred hhCCC----CCchhHHHHHHHHHHHHHHhC---------CCceEEEEecCCCc
Q 018009 152 EYGGW----INRTIVKDFTAYADVCFRQFG---------DRVSYWTTVNEPNA 191 (362)
Q Consensus 152 ~~gg~----~~~~~~~~f~~ya~~~~~~~~---------d~v~~w~t~NEp~~ 191 (362)
. .|- .++...++-.+|.+.+++.++ +-|-...+=||-..
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs 189 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP 189 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc
Confidence 3 442 245566777777777777774 23556667777543
No 33
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.88 E-value=0.0027 Score=61.39 Aligned_cols=96 Identities=17% Similarity=0.252 Sum_probs=75.4
Q ss_pred HHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEe--ecCCCCcHhHHhhhCCCCCchhHHHHHH
Q 018009 90 ADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT--LHHFDLPQALEDEYGGWINRTIVKDFTA 167 (362)
Q Consensus 90 ~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt--L~H~~~P~~l~~~~gg~~~~~~~~~f~~ 167 (362)
++.+.=+----..|.-|+|+ +|.+| ++.=|.+++-++++||..--- +.|--.|.|+.. .-+..+...+...+
T Consensus 56 re~n~iTpenemKwe~i~p~-~G~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~ 129 (345)
T COG3693 56 RECNQITPENEMKWEAIEPE-RGRFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEE 129 (345)
T ss_pred hhhcccccccccccccccCC-CCccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHH
Confidence 44444444445679999998 89999 556789999999999985321 234468999842 34777889999999
Q ss_pred HHHHHHHHhCCCceEEEEecCCCc
Q 018009 168 YADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 168 ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
+..+|+.||++.|..|=+.|||--
T Consensus 130 hI~tV~~rYkg~~~sWDVVNE~vd 153 (345)
T COG3693 130 HIKTVVGRYKGSVASWDVVNEAVD 153 (345)
T ss_pred HHHHHHHhccCceeEEEecccccC
Confidence 999999999999999999999975
No 34
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.77 E-value=0.0035 Score=62.31 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=49.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhh---CC-----CCCchhHHHHHHHHHHHHHHhCC---C
Q 018009 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY---GG-----WINRTIVKDFTAYADVCFRQFGD---R 179 (362)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~---gg-----~~~~~~~~~f~~ya~~~~~~~~d---~ 179 (362)
+|.+|..+=+-=+.++++++++|++.++ ++-+.-|.|+.... |+ =+.++..+.|++|-..|+++|.. .
T Consensus 95 dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~ 173 (384)
T PF14587_consen 95 DGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGIN 173 (384)
T ss_dssp TS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--
T ss_pred CCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCc
Confidence 5777765434455689999999999887 55577777775321 11 14567899999999999999944 5
Q ss_pred ceEEEEecCCCc
Q 018009 180 VSYWTTVNEPNA 191 (362)
Q Consensus 180 v~~w~t~NEp~~ 191 (362)
+++-.++|||+.
T Consensus 174 f~~IsP~NEP~~ 185 (384)
T PF14587_consen 174 FDYISPFNEPQW 185 (384)
T ss_dssp EEEEE--S-TTS
T ss_pred cceeCCcCCCCC
Confidence 899999999993
No 35
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.42 E-value=0.016 Score=55.70 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=62.1
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCC---
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG--- 155 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg--- 155 (362)
.+.++.|+++||++|+|++|++- .|. + .++++.|-+.||-++.-+.....-.|- ..+-
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~~ 95 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCNY 95 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTSC
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEeccccccCccc--cCCcccc
Confidence 56789999999999999999843 122 1 256778888999999766432211111 0110
Q ss_pred -CCCchhHHHHHHHHHHHHHHhCCC--ceEEEEecCC
Q 018009 156 -WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEP 189 (362)
Q Consensus 156 -~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp 189 (362)
-.+++..+.+.+-++.+++++.++ |-.|.+.||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 96 DADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 135677888888889999999875 9999999998
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.77 E-value=0.088 Score=46.68 Aligned_cols=101 Identities=17% Similarity=0.327 Sum_probs=65.8
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccc-----cCC--CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhh
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLI-----PNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY 153 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~-----P~g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ 153 (362)
+|+++++.|+++|++.+=+. |+... |.. ++.+.....+.++.+++++.++||++++.|+. -|.|.. .
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~-~- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWD-Q- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhh-c-
Confidence 68999999999999998644 55442 220 11122234578999999999999999999984 455654 2
Q ss_pred CCCCCch-hHHHHHHHHHHHHHHhCCC--ceEEEEecCCC
Q 018009 154 GGWINRT-IVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (362)
Q Consensus 154 gg~~~~~-~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 190 (362)
.+.+ -++.=..-++.+.++|+.+ +.-|-+=.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 2211 2333344567778888864 45555555554
No 37
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.044 Score=57.54 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=86.0
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec--------CCCCcHhHHh
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALED 151 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~--------H~~~P~~l~~ 151 (362)
+.|++=|+.+|++|+|++-.=+.|.-.||. +|++|.+|.-=..++|..+.++|+-+++-+- |-++|.||..
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 457888999999999999999999999999 8999999887788899999999998766543 5679988865
Q ss_pred hhCCC----CCchhHHHHHHHHHHHHHHhC-------CCceEEEEecCCC
Q 018009 152 EYGGW----INRTIVKDFTAYADVCFRQFG-------DRVSYWTTVNEPN 190 (362)
Q Consensus 152 ~~gg~----~~~~~~~~f~~ya~~~~~~~~-------d~v~~w~t~NEp~ 190 (362)
. .|- .|+.+..++.+|.+.++...+ +-|-.-.+=||-.
T Consensus 128 ~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 128 V-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred C-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 4 442 366678888889888887443 2355556667755
No 38
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.45 E-value=0.056 Score=57.33 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhh-------h
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE-------Y 153 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~-------~ 153 (362)
.+..|+++||++|+|++|++- .|. + .++++.|=+.||-++.-+.-+....|.... .
T Consensus 314 ~~~~d~~l~K~~G~N~vR~sh-----~p~-----~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~ 376 (604)
T PRK10150 314 LNVHDHNLMKWIGANSFRTSH-----YPY-----S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHHHCCCCEEEecc-----CCC-----C-------HHHHHHHHhcCcEEEEeccccccccccccccccccccc
Confidence 478899999999999999952 232 1 156788888999888665433322222100 0
Q ss_pred CCCC----CchhHHHHHHHHHHHHHHhCCC--ceEEEEecCCC
Q 018009 154 GGWI----NRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (362)
Q Consensus 154 gg~~----~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 190 (362)
..|. +++..+.+.+-++.+++|.+++ |-.|.+-||+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 1222 3456778888899999999885 88999999974
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.90 E-value=0.37 Score=54.42 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=62.7
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCC
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~ 158 (362)
...+++||++||++|+|++|++ -.|. + .++.+.|=+.||-++--..-.....+.... ...+
T Consensus 370 ~e~~~~di~lmK~~g~NaVR~s-----HyP~-----~-------p~fydlcDe~GilV~dE~~~e~hg~~~~~~--~~~d 430 (1027)
T PRK09525 370 EETMVQDILLMKQHNFNAVRCS-----HYPN-----H-------PLWYELCDRYGLYVVDEANIETHGMVPMNR--LSDD 430 (1027)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCC-----C-------HHHHHHHHHcCCEEEEecCccccCCccccC--CCCC
Confidence 4568899999999999999995 2333 1 145677888999888664210001000000 0124
Q ss_pred chhHHHHHHHHHHHHHHhCCC--ceEEEEecCCC
Q 018009 159 RTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 190 (362)
++..+.+.+=++.+++|.+.+ |-.|..-||+.
T Consensus 431 p~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 431 PRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 556667777788899999886 89999999975
No 40
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=92.70 E-value=0.91 Score=43.91 Aligned_cols=87 Identities=22% Similarity=0.412 Sum_probs=62.8
Q ss_pred ccCcHHHHHHHHHcCCCeeeec---ccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCC
Q 018009 79 YHKYKEDVKLMADTGLDAYRFS---ISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG 155 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~s---i~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg 155 (362)
..||.+-.++++++|+|.+-+. ..-..|-|+ -++.+.++-+.++.+||++.+++. |..|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~~--------~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTPE--------YLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGSTT--------THHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCHH--------HHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 4688888999999999998765 223333322 377888999999999999999997 7888654 55
Q ss_pred C-----CCchhHHHHHHHHHHHHHHhCC
Q 018009 156 W-----INRTIVKDFTAYADVCFRQFGD 178 (362)
Q Consensus 156 ~-----~~~~~~~~f~~ya~~~~~~~~d 178 (362)
. ++++++..|.+=++.+.+++.|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3 5788999999999999999876
No 41
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=91.48 E-value=0.34 Score=48.54 Aligned_cols=100 Identities=17% Similarity=0.274 Sum_probs=73.6
Q ss_pred HHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCC--CchhHHHHH
Q 018009 89 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI--NRTIVKDFT 166 (362)
Q Consensus 89 ~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~--~~~~~~~f~ 166 (362)
-+|+|++-+|.---|.-++.. =-++ +..+++++|.+...|+.-+.+-.||..+.-..+.|.+=. .....+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 478999999998888833322 2345 788999999999999665666667777765544333322 234789999
Q ss_pred HHHHHHHHHhCCC-ceEE--EEecCCCccc
Q 018009 167 AYADVCFRQFGDR-VSYW--TTVNEPNAFA 193 (362)
Q Consensus 167 ~ya~~~~~~~~d~-v~~w--~t~NEp~~~~ 193 (362)
.+++.|+.++|-+ |.-| ..+||||..+
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCccc
Confidence 9999999999953 5555 7999999874
No 42
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=91.17 E-value=0.77 Score=51.89 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=62.1
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec---C-CCCcHhHHhhhC
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---H-FDLPQALEDEYG 154 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~---H-~~~P~~l~~~~g 154 (362)
...+++|+++||++|+|++|++ ..|.. ..+.+.|=+.||-++--.. | |.... .+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~~- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND------------PRFYELCDIYGLFVMAETDVESHGFANVG----DI- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHCCCEEEECCcccccCccccc----cc-
Confidence 4678999999999999999996 24441 1566788889998776542 1 11100 00
Q ss_pred CC--CCchhHHHHHHHHHHHHHHhCCC--ceEEEEecCCC
Q 018009 155 GW--INRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (362)
Q Consensus 155 g~--~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 190 (362)
.+ .+++..+.|.+=++.+++|.+.+ |-.|..-||..
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 11 22344566777788899999886 88999999973
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=90.46 E-value=1.2 Score=48.90 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=66.4
Q ss_pred CccccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCC
Q 018009 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG 155 (362)
Q Consensus 76 ~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg 155 (362)
+-.+..+++|+++||++|+|++|.| =.|.. .+..+.|-+.||-++=-..+. -+++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~~--------~~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMIE--------THGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecchh--------hcCC
Confidence 3335569999999999999999998 34441 255667778899988655431 1244
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCC--ceEEEEecCCC
Q 018009 156 WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (362)
Q Consensus 156 ~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 190 (362)
...++..+...+=++..++|-+++ |-.|..=||..
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 455666677777788889998874 89999999966
No 44
>smart00642 Aamy Alpha-amylase domain.
Probab=88.32 E-value=1.4 Score=39.01 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=43.6
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccc---------cCCCCCCCh--hhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLI---------PNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~---------P~g~g~~n~--~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
+....+-++.++++|++++-++--+.... |..--.+|+ -..+-++++|++|+++||++++++.
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44556677889999999998876544442 110011222 1356789999999999999999874
No 45
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.46 E-value=8 Score=39.87 Aligned_cols=112 Identities=19% Similarity=0.425 Sum_probs=68.2
Q ss_pred ccCcHHHHHHHHHcCCCeeeec----ccccccccC-----------------------C-----CCCCChh----hhHHH
Q 018009 79 YHKYKEDVKLMADTGLDAYRFS----ISWSRLIPN-----------------------G-----RGPVNPK----GLQYY 122 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~s----i~W~ri~P~-----------------------g-----~g~~n~~----~~~~y 122 (362)
|.+|+..|+.|+-.|+|..=-- +-|.+++-. | .|...++ -+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 7899999999999999976422 124443322 1 1333221 22334
Q ss_pred HHHHHHHHHcCCeeEEeecCCCCcHhHHhhh--------CCCC---C------------chhHHHHHHHHHHHHHHhCCC
Q 018009 123 NNLINELISYGIQPHVTLHHFDLPQALEDEY--------GGWI---N------------RTIVKDFTAYADVCFRQFGDR 179 (362)
Q Consensus 123 ~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~--------gg~~---~------------~~~~~~f~~ya~~~~~~~~d~ 179 (362)
+++|+++++-||.|++--+---.|..|..-+ +-|. + +-+.+-=..|.+...+.||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999998877666888876432 2232 1 112333334556667889863
Q ss_pred ceEE--EEecCCC
Q 018009 180 VSYW--TTVNEPN 190 (362)
Q Consensus 180 v~~w--~t~NEp~ 190 (362)
-..+ =||||..
T Consensus 237 tniy~~DpFNE~~ 249 (666)
T KOG2233|consen 237 TNIYSADPFNEIL 249 (666)
T ss_pred ccccccCcccccC
Confidence 2222 3888853
No 46
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=81.99 E-value=0.7 Score=47.27 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=77.9
Q ss_pred cHHHHHHHHHcCCCeeeecc-cccccccCCCCCCChhh-hHHHHHHHHHHHHcCCeeEEeec----CCCCcHhHHhhhCC
Q 018009 82 YKEDVKLMADTGLDAYRFSI-SWSRLIPNGRGPVNPKG-LQYYNNLINELISYGIQPHVTLH----HFDLPQALEDEYGG 155 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~ri~P~g~g~~n~~~-~~~y~~~i~~l~~~Gi~p~vtL~----H~~~P~~l~~~~gg 155 (362)
-+.|++.++.+|++..|++| +=..+- +..|..|++. +.+.+.+++.+...+|+.++||. |+.-=.|-..=.||
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~-d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCR-DKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchh-hhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 35688999999999999994 312222 2257777765 89999999999999999999986 33222221100011
Q ss_pred ------CCCchhHHHHHHHHHHHHHHhCCC--ceEEEEecCCCc
Q 018009 156 ------WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (362)
Q Consensus 156 ------~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~ 191 (362)
...+.....|.+|++.+++.|+.. +--|+.-|||-+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 224566788999999999988864 778999999766
No 47
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=80.79 E-value=11 Score=36.73 Aligned_cols=48 Identities=21% Similarity=0.379 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecC
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (362)
..+.|+.+||+||+|++|+= -|-|. .| .++-...|.++||-.+++|.-
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~----~n------Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPS----KN------HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCC----CC------HHHHHHHHHhCCCEEEEecCC
Confidence 56899999999999999973 34444 13 567888999999999999974
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=79.09 E-value=8 Score=32.90 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCeeeeccc--ccc-cccCCCCC--CChhhhHHHHHHHHHHHHcCCeeEEeecC
Q 018009 84 EDVKLMADTGLDAYRFSIS--WSR-LIPNGRGP--VNPKGLQYYNNLINELISYGIQPHVTLHH 142 (362)
Q Consensus 84 eDi~l~~~lG~~~~R~si~--W~r-i~P~g~g~--~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (362)
+=++.++++|+|++-+... +-- -.|..-|. ...+ -+.+.++|++|+++||++++=+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 3468899999999999433 211 12332122 2223 578999999999999999987653
No 49
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=78.60 E-value=3.3 Score=38.77 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCC-------CCChh--hhHHHHHHHHHHHHcCCeeEEeec
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNPK--GLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g-------~~n~~--~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
.+-++.+|+||++++-++=-+..-. ...| .+|++ ..+=++++|++|+++||++|+++-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4567899999999999885444110 1011 12322 466799999999999999999974
No 50
>PLN02361 alpha-amylase
Probab=77.21 E-value=3.8 Score=41.46 Aligned_cols=64 Identities=16% Similarity=0.306 Sum_probs=45.9
Q ss_pred ccccCcHHHHHHHHHcCCCeeeecccccccccCCCC-----CCChh--hhHHHHHHHHHHHHcCCeeEEee
Q 018009 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-----PVNPK--GLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 77 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g-----~~n~~--~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
.+|....+-++-+++||++++=++=...-.-+.|-. .+|.. ..+-++++|++|+++||++++++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 478889999999999999999877544333233211 11211 24568999999999999999874
No 51
>PLN00196 alpha-amylase; Provisional
Probab=76.59 E-value=4.4 Score=41.39 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=42.9
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCC-----CCh-h--hhHHHHHHHHHHHHcCCeeEEee
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNP-K--GLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~-----~n~-~--~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
|....+.++-+++||++++=++=......+.|-.. +|+ . .-+-++++|++++++||++|++.
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44457788999999999998885544332222111 221 0 23458999999999999999984
No 52
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=76.24 E-value=21 Score=35.25 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=64.5
Q ss_pred CCcCCccccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHh
Q 018009 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (362)
Q Consensus 72 ~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~ 151 (362)
+-+|.=|++ |+--+..++ .|++.+|+. ||.+-. -+..+++++.++++|+-.=+...|-.++.-+.+
T Consensus 74 PlVADIHFd-~~lAl~a~~-~g~dkiRIN----------PGNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 74 PLVADIHFD-YRLAALAMA-KGVAKVRIN----------PGNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CEEEeeCCC-cHHHHHHHH-hccCeEEEC----------CCCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 334555665 555555554 499999862 455432 457899999999999999999999999999999
Q ss_pred hhCCCCCchhHHHHHHHHHHHH
Q 018009 152 EYGGWINRTIVKDFTAYADVCF 173 (362)
Q Consensus 152 ~~gg~~~~~~~~~f~~ya~~~~ 173 (362)
+||+-+.+..++.-.++++.+-
T Consensus 140 kyg~~t~eamveSAl~~v~~le 161 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAILE 161 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHHH
Confidence 9876455556666667766653
No 53
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=75.84 E-value=13 Score=35.63 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=70.5
Q ss_pred cccccccccCccCCCCCcCCccccCcHHHHHHHHHcCCCeeeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCe
Q 018009 57 SIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQ 135 (362)
Q Consensus 57 s~wd~~~~~~~~~~~~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~-g~~n~~~~~~y~~~i~~l~~~Gi~ 135 (362)
+.|+-|..... ...+..+.-.+.++++=|+..+++|+..+=+.-.|+.-.+... +......-....++++..++.|+.
T Consensus 10 ~~W~Ww~~~~~-~~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVg 88 (273)
T PF10566_consen 10 AAWSWWSMHNG-KGVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVG 88 (273)
T ss_dssp EEECTCCCCTT-SSBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-E
T ss_pred EEEeecccCCC-CCCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 56666643211 0122234446788999999999999999999999997432211 111111223478999999999999
Q ss_pred eEEeecCCC------CcHhHHh---hh---C------CC---CCchhHHHHHHHHHHHHHH
Q 018009 136 PHVTLHHFD------LPQALED---EY---G------GW---INRTIVKDFTAYADVCFRQ 175 (362)
Q Consensus 136 p~vtL~H~~------~P~~l~~---~~---g------g~---~~~~~~~~f~~ya~~~~~~ 175 (362)
+++-.+|-+ +=..+.+ .| | |+ .+.+.++.+.+-++.++++
T Consensus 89 i~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 89 IWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp EEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 999998755 1111211 11 1 23 3456788888888888765
No 54
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=75.25 E-value=12 Score=38.75 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=61.8
Q ss_pred cccCcHHH-----HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHh----
Q 018009 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA---- 148 (362)
Q Consensus 78 ~~~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~---- 148 (362)
.|..|.+| ++...+.|++.+|+.++-+.+ +-..+.|+..++.|+....++.+-..|.+
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~ 154 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEY 154 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHH
Confidence 36778888 899999999999999866642 34567778888889888877765434521
Q ss_pred HHh------hh----------CCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 149 LED------EY----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 149 l~~------~~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
+.+ +. .|-.. +....+.++.+-++++ ..-...+.|-..+
T Consensus 155 ~~~~a~~l~~~Gad~I~i~Dt~G~l~---P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~Gl 209 (467)
T PRK14041 155 YLEFARELVDMGVDSICIKDMAGLLT---PKRAYELVKALKKKFG-VPVEVHSHCTTGL 209 (467)
T ss_pred HHHHHHHHHHcCCCEEEECCccCCcC---HHHHHHHHHHHHHhcC-CceEEEecCCCCc
Confidence 110 00 23343 3455556666666664 2224457776654
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=74.66 E-value=14 Score=36.04 Aligned_cols=99 Identities=17% Similarity=0.320 Sum_probs=65.5
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccc-------cccccCC---CCCC-ChhhhHHHHHHHHHHHHcCCeeEEee----c--
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISW-------SRLIPNG---RGPV-NPKGLQYYNNLINELISYGIQPHVTL----H-- 141 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W-------~ri~P~g---~g~~-n~~~~~~y~~~i~~l~~~Gi~p~vtL----~-- 141 (362)
-...++-++.++++|+|++=+.+.+ |.++|.. .|.. ...+++-+..+|++++++||+...-+ -
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 3446778899999999998766544 3333321 1111 11257889999999999999987443 1
Q ss_pred ---C--CCCcHhHHhh-------h----CC--CC---CchhHHHHHHHHHHHHHHhC
Q 018009 142 ---H--FDLPQALEDE-------Y----GG--WI---NRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 142 ---H--~~~P~~l~~~-------~----gg--~~---~~~~~~~f~~ya~~~~~~~~ 177 (362)
| -..|.|+..+ + ++ |. +|++.+...+-++.++++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 1246665421 1 22 44 45888999999999999996
No 56
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=74.06 E-value=12 Score=39.83 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=58.8
Q ss_pred cccCcHHH-----HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCc----Hh
Q 018009 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP----QA 148 (362)
Q Consensus 78 ~~~~~~eD-----i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P----~~ 148 (362)
.|.+|.+| ++..++.|++.+|+....+.+ +-....|+.++++|.....++.+=+.| ..
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 36677666 999999999999999755443 345566777777777665555432234 22
Q ss_pred HHhh------h----------CCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 149 LEDE------Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 149 l~~~------~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
+.+. . .|-.. +....+.++.+-++++ .--...+.|-..+
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~l~---P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 211 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGLLK---PYAAYELVSRIKKRVD-VPLHLHCHATTGL 211 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcC---HHHHHHHHHHHHHhcC-CeEEEEECCCCch
Confidence 2110 0 23333 4455666666666773 3234568887765
No 57
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=72.92 E-value=12 Score=35.84 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=61.5
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCc
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR 159 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~ 159 (362)
+-+.|++.+++.|++.+++.++=|...-.. -+.--++.++...++|+.+++.|+++.+++-+|+.|. +
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r 143 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------R 143 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------c
Confidence 346799999999999999998655443321 1333457899999999999999999999998766552 1
Q ss_pred hhHHHHHHHHHHHHHH
Q 018009 160 TIVKDFTAYADVCFRQ 175 (362)
Q Consensus 160 ~~~~~f~~ya~~~~~~ 175 (362)
..++.+.++++.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~ 159 (280)
T cd07945 144 DSPDYVFQLVDFLSDL 159 (280)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 1256777777776553
No 58
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=72.58 E-value=13 Score=34.98 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=56.1
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCch
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 160 (362)
-.+|++...+.|++.+|+.++.+.+.-.. -+.--+++++...++++.+++.|+++.+++.. .+..
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~~--- 136 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED-----------ASRA--- 136 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc-----------CCCC---
Confidence 37899999999999999999888764220 13323567889999999999999988765531 2222
Q ss_pred hHHHHHHHHHHHHH
Q 018009 161 IVKDFTAYADVCFR 174 (362)
Q Consensus 161 ~~~~f~~ya~~~~~ 174 (362)
..+.+.+.++.+.+
T Consensus 137 ~~~~~~~~~~~~~~ 150 (259)
T cd07939 137 DPDFLIEFAEVAQE 150 (259)
T ss_pred CHHHHHHHHHHHHH
Confidence 25566666666654
No 59
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=71.91 E-value=8.2 Score=39.82 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=43.0
Q ss_pred ccccCcHHHHHHHHHcCCCeeeecccccc--------cccCC---------CCCCChh--hhHHHHHHHHHHHHcCCeeE
Q 018009 77 DGYHKYKEDVKLMADTGLDAYRFSISWSR--------LIPNG---------RGPVNPK--GLQYYNNLINELISYGIQPH 137 (362)
Q Consensus 77 d~~~~~~eDi~l~~~lG~~~~R~si~W~r--------i~P~g---------~g~~n~~--~~~~y~~~i~~l~~~Gi~p~ 137 (362)
+.|....+-++-+++||++++=++=...- -.|.- .|.+|+. ..+-++++|++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 34555567789999999999987743322 11110 0122222 34568999999999999999
Q ss_pred Eeec
Q 018009 138 VTLH 141 (362)
Q Consensus 138 vtL~ 141 (362)
+++-
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9853
No 60
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=71.55 E-value=25 Score=33.90 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=66.8
Q ss_pred cHHHHHHHHHcC--CCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCC---CCcHhHHhhh---
Q 018009 82 YKEDVKLMADTG--LDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDEY--- 153 (362)
Q Consensus 82 ~~eDi~l~~~lG--~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~~l~~~~--- 153 (362)
..+-++.+++.| ++++=+.+.|.+-.-.++=.+|++.+--.+.+|++|++.|+++++.++-+ +.|..-+.+-
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 466788889999 55677777887532111224565556667899999999999988877532 2232211100
Q ss_pred ------------------CC---CCCchhHHHHHHHHHHHHHHhCCCce-EEEEecCCC
Q 018009 154 ------------------GG---WINRTIVKDFTAYADVCFRQFGDRVS-YWTTVNEPN 190 (362)
Q Consensus 154 ------------------gg---~~~~~~~~~f~~ya~~~~~~~~d~v~-~w~t~NEp~ 190 (362)
++ ++|++..+.|.+..+.+.+ . .|+ +|.=+||+.
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~--Gid~~~~D~~e~~ 161 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-M--GVDCFKTDFGERI 161 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-h--CCcEEecCCCCCC
Confidence 11 5677888888777765544 3 244 456688873
No 61
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=70.81 E-value=8.8 Score=41.58 Aligned_cols=62 Identities=19% Similarity=0.384 Sum_probs=42.5
Q ss_pred ccCcHHH--HHHHHHcCCCeeee----cccccccccC-CC---------------CC--CCh---hhhHHHHHHHHHHHH
Q 018009 79 YHKYKED--VKLMADTGLDAYRF----SISWSRLIPN-GR---------------GP--VNP---KGLQYYNNLINELIS 131 (362)
Q Consensus 79 ~~~~~eD--i~l~~~lG~~~~R~----si~W~ri~P~-g~---------------g~--~n~---~~~~~y~~~i~~l~~ 131 (362)
|--..+- |+-+|+||++++.+ ++.+.+-.++ |. |. .++ ..+.-++++|++|.+
T Consensus 197 y~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHk 276 (697)
T COG1523 197 YLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHK 276 (697)
T ss_pred eehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHH
Confidence 3334444 99999999999984 3444443321 10 11 132 368889999999999
Q ss_pred cCCeeEEee
Q 018009 132 YGIQPHVTL 140 (362)
Q Consensus 132 ~Gi~p~vtL 140 (362)
+||++|+++
T Consensus 277 aGI~VILDV 285 (697)
T COG1523 277 AGIEVILDV 285 (697)
T ss_pred cCCEEEEEE
Confidence 999999985
No 62
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=70.06 E-value=29 Score=36.53 Aligned_cols=92 Identities=18% Similarity=0.318 Sum_probs=57.3
Q ss_pred ccCcHHHHHHHHHcCCCeeeecc--------cc-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec--
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSI--------SW-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-- 141 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si--------~W-------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-- 141 (362)
+.-..+-++.+++||++++-+.= .| -.+.|. -| ..+-++++|++|+++||++|+++-
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~G-----~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-YG-----GPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-cC-----CHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 45556678999999999997652 12 111111 12 245689999999999999999854
Q ss_pred CCC---------CcHhHHhh-hCCC------CCc---hhHHHHHHHHHHHHHHhC
Q 018009 142 HFD---------LPQALEDE-YGGW------INR---TIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 142 H~~---------~P~~l~~~-~gg~------~~~---~~~~~f~~ya~~~~~~~~ 177 (362)
|.. -| |+... ..+| .++ ++.+.+.+-++.-++.|+
T Consensus 184 H~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 184 HFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 543 12 22111 1233 234 666777776766666665
No 63
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=69.79 E-value=16 Score=33.91 Aligned_cols=80 Identities=14% Similarity=0.030 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchh
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 161 (362)
+++++.+++.|++.+|++++-+.+.-.- -+.=.+..++...+.++.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 8999999999999999999877421110 011122357888999999999999999998543322 233
Q ss_pred HHHHHHHHHHHHH
Q 018009 162 VKDFTAYADVCFR 174 (362)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (362)
.+.+.++++.+.+
T Consensus 145 ~~~l~~~~~~~~~ 157 (265)
T cd03174 145 PEYVLEVAKALEE 157 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666654
No 64
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=69.72 E-value=20 Score=34.13 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhH
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~ 162 (362)
.+|++...+.|++.+|+++..+ .++...++++.++++|+++.+.+.+-. + -..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CCH
Confidence 5889999999999999987432 377788999999999999999886411 1 135
Q ss_pred HHHHHHHHHHHH
Q 018009 163 KDFTAYADVCFR 174 (362)
Q Consensus 163 ~~f~~ya~~~~~ 174 (362)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 566777777654
No 65
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=69.61 E-value=11 Score=39.86 Aligned_cols=63 Identities=17% Similarity=0.360 Sum_probs=42.7
Q ss_pred ccccCcHHHHHHHHHcCCCeeeecccccccccCCC-C-------CCChh--hhHHHHHHHHHHHHcCCeeEEeec
Q 018009 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-G-------PVNPK--GLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 77 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~-g-------~~n~~--~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
.-+.-..+.++.+++||++++=++=-+.. |... | .+|+. ..+-++++|++++++||++|+++-
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34555668899999999999977643311 1101 1 11221 345689999999999999999864
No 66
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=69.05 E-value=21 Score=34.44 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=61.8
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeEEeecC-CCCcHhHHhhhCCCCC
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWIN 158 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H-~~~P~~l~~~~gg~~~ 158 (362)
+-.+|+++..+.|++.+|+.++=|...-. .-+.--++.++...++|+.++++|+++..++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~- 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV- 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC-
Confidence 35899999999999999999866543211 123334567899999999999999999877763 4444 23333
Q ss_pred chhHHHHHHHHHHHHHH
Q 018009 159 RTIVKDFTAYADVCFRQ 175 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~ 175 (362)
..+.+.++++.+.+.
T Consensus 153 --~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 --PPEAVADVAERLFAL 167 (287)
T ss_pred --CHHHHHHHHHHHHHc
Confidence 366778888877654
No 67
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=68.76 E-value=12 Score=39.47 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=41.6
Q ss_pred cccCcHHHHHHHHHcCCCeeeecccccccccCCCC-------CCChh--hhHHHHHHHHHHHHcCCeeEEeec
Q 018009 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNPK--GLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 78 ~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g-------~~n~~--~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
.+.-..+-++-+++||++++=++=-...-.-. .| .+|+. ..+-++++|++++++||++|+++.
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~-~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKD-NGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCC-CCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34455677899999999999765322211000 01 11221 346689999999999999999854
No 68
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.65 E-value=32 Score=33.26 Aligned_cols=107 Identities=18% Similarity=0.253 Sum_probs=71.9
Q ss_pred cHHHHHHHHHcCC--CeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCC---CcHhHH------
Q 018009 82 YKEDVKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD---LPQALE------ 150 (362)
Q Consensus 82 ~~eDi~l~~~lG~--~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~---~P~~l~------ 150 (362)
..+-++.+++.|+ +++=+.+.|..-. |+=.+|.+.+--..++|+.|++.|+++++.+.=+- .+..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 4556788888885 5666777785432 22345666666688999999999999998765321 111111
Q ss_pred ---hhhC----------C------CCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 151 ---DEYG----------G------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 151 ---~~~g----------g------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
++-| | ++|++..+.|.+..+.++...| ---+|+=+|||..
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~ 168 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG-IDSFKFDAGEASY 168 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC-CcEEEeCCCCccc
Confidence 0001 1 5788999999988888887764 3456688999973
No 69
>PRK05402 glycogen branching enzyme; Provisional
Probab=67.48 E-value=35 Score=37.28 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=57.7
Q ss_pred cCcHHHH-HHHHHcCCCeeeeccc--------cc-------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee--c
Q 018009 80 HKYKEDV-KLMADTGLDAYRFSIS--------WS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--H 141 (362)
Q Consensus 80 ~~~~eDi-~l~~~lG~~~~R~si~--------W~-------ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL--~ 141 (362)
.-..+.+ +-+++||++++=+.=- |- .+.|. -| ..+-++++|++|+++||++|+++ .
T Consensus 265 ~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~-~G-----t~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 265 RELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR-FG-----TPDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3334453 7889999999976532 21 12222 12 24568899999999999999995 3
Q ss_pred CCCCc-----------HhHHh-----hhCCC-------CCchhHHHHHHHHHHHHHHhC
Q 018009 142 HFDLP-----------QALED-----EYGGW-------INRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 142 H~~~P-----------~~l~~-----~~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (362)
|+... .+... .+..| .++++.+.+.+-++.-+++|+
T Consensus 339 H~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 339 HFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 55321 11000 01123 367788888888888888876
No 70
>PRK12313 glycogen branching enzyme; Provisional
Probab=67.26 E-value=32 Score=36.87 Aligned_cols=93 Identities=16% Similarity=0.305 Sum_probs=58.9
Q ss_pred ccCcHHH-HHHHHHcCCCeeeecc--------cc-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee--
Q 018009 79 YHKYKED-VKLMADTGLDAYRFSI--------SW-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 140 (362)
Q Consensus 79 ~~~~~eD-i~l~~~lG~~~~R~si--------~W-------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL-- 140 (362)
|.-..+. ++-+++||++++=+.= +| -.+.|. -|. .+-++++|++|+++||++|+++
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~-~Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR-YGT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC-CCC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 4444556 4899999999997652 12 112222 122 4458999999999999999994
Q ss_pred cCCCCcH----hHH--------h---h-hCCC-------CCchhHHHHHHHHHHHHHHhC
Q 018009 141 HHFDLPQ----ALE--------D---E-YGGW-------INRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 141 ~H~~~P~----~l~--------~---~-~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (362)
.|..-.. ++. + . +.+| .++++.+.+.+-++.-++.|+
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4653111 110 0 0 0123 367788888888888888876
No 71
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=66.89 E-value=35 Score=32.49 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=49.7
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchh
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 161 (362)
-++|++...+.|++.+|+++..+. ++...+.++.++++|+++.+++.--+ + ++-.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CCCC
Confidence 478999999999999999875554 45677899999999999887663101 1 2223
Q ss_pred HHHHHHHHHHHHHH
Q 018009 162 VKDFTAYADVCFRQ 175 (362)
Q Consensus 162 ~~~f~~ya~~~~~~ 175 (362)
.+.+.++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~ 161 (275)
T cd07937 148 LEYYVKLAKELEDM 161 (275)
T ss_pred HHHHHHHHHHHHHc
Confidence 55667777766553
No 72
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=66.78 E-value=30 Score=34.11 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=47.5
Q ss_pred CChhhhHHHHHHHHHHHHcCCeeEEeecCC-CCcHhHHh--hhCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 114 VNPKGLQYYNNLINELISYGIQPHVTLHHF-DLPQALED--EYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 114 ~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~-~~P~~l~~--~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
+|++.+---++++++|++.|++.++.++-+ ..-..+.. .+-.|.++++.+.|.+..+.+.+ . +-.-.|+=+|||.
T Consensus 58 ~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~-Gv~~~W~DmnEp~ 135 (332)
T cd06601 58 TNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-I-GLEFVWQDMTTPA 135 (332)
T ss_pred ecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-C-CCceeecCCCCcc
Confidence 344434445689999999999988766421 10000000 11236788888877666554433 2 2345889999999
Q ss_pred cccc
Q 018009 191 AFAN 194 (362)
Q Consensus 191 ~~~~ 194 (362)
++..
T Consensus 136 ~~~~ 139 (332)
T cd06601 136 IMPS 139 (332)
T ss_pred cccC
Confidence 8654
No 73
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=66.73 E-value=23 Score=36.63 Aligned_cols=93 Identities=17% Similarity=0.300 Sum_probs=58.8
Q ss_pred eeeeeechhhhcCCcCCCCCCCccccccccc----Ccc----CCCCCcCCccccCcHHH-----HHHHHHcCCCeeeecc
Q 018009 35 LFGASTSAYQVEGAANEDGRTPSIWDTFAHA----GNV----HGTGDIACDGYHKYKED-----VKLMADTGLDAYRFSI 101 (362)
Q Consensus 35 lwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~----~~~----~~~~~~a~d~~~~~~eD-----i~l~~~lG~~~~R~si 101 (362)
.||+|| |++--.+. ..+.|+..... ++. ...+ .-.=.|..|.+| +++.++.|++.+|+.-
T Consensus 54 ~wGGAt--fd~~~rfl----~edpwerlr~~r~~~~nt~lqmLlRG-~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd 126 (468)
T PRK12581 54 CWGGAT--FDACIRFL----NEDPWERLRTLKKGLPNTRLQMLLRG-QNLLGYRHYADDIVDKFISLSAQNGIDVFRIFD 126 (468)
T ss_pred ecCCcc--hhhhhccc----CCCHHHHHHHHHHhCCCCceeeeecc-ccccCccCCcchHHHHHHHHHHHCCCCEEEEcc
Confidence 577666 77644432 23568765432 111 0011 111237888899 9999999999999875
Q ss_pred cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcH
Q 018009 102 SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ 147 (362)
Q Consensus 102 ~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 147 (362)
... .++-....|+.+++.|....+++.+=+.|.
T Consensus 127 ~ln-------------d~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 127 ALN-------------DPRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred cCC-------------CHHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Confidence 332 144566778888888888888887755563
No 74
>PRK09505 malS alpha-amylase; Reviewed
Probab=66.56 E-value=14 Score=40.10 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=41.1
Q ss_pred cHHHHHHHHHcCCCeeeecccccccc-----------cC-C-CC-------CCChh--hhHHHHHHHHHHHHcCCeeEEe
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLI-----------PN-G-RG-------PVNPK--GLQYYNNLINELISYGIQPHVT 139 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------P~-g-~g-------~~n~~--~~~~y~~~i~~l~~~Gi~p~vt 139 (362)
..+-++.+++||++++=++=-...+. |. + .| .+|+. ..+-++++|++++++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55668899999999998874433321 10 0 01 12222 3566999999999999999998
Q ss_pred ec
Q 018009 140 LH 141 (362)
Q Consensus 140 L~ 141 (362)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 54
No 75
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=66.36 E-value=24 Score=35.01 Aligned_cols=86 Identities=10% Similarity=-0.007 Sum_probs=61.1
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeecC-CCCcHhHHhhhCCCCC
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWIN 158 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H-~~~P~~l~~~~gg~~~ 158 (362)
.-.+|++...+.|++.+++.++=|...-.. -+.--++.++.+.++|+.++++|+++.+++.. |+.| +.|..
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p------~~~r~- 194 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP------IEGPV- 194 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC------ccCCC-
Confidence 368999999999999999998766544331 23334678999999999999999999877753 4443 12322
Q ss_pred chhHHHHHHHHHHHHHH
Q 018009 159 RTIVKDFTAYADVCFRQ 175 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~ 175 (362)
.++.+.++++.+.+.
T Consensus 195 --~~~~l~~~~~~~~~~ 209 (347)
T PLN02746 195 --PPSKVAYVAKELYDM 209 (347)
T ss_pred --CHHHHHHHHHHHHHc
Confidence 356666777666543
No 76
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=65.77 E-value=3.5 Score=32.23 Aligned_cols=19 Identities=42% Similarity=0.767 Sum_probs=13.8
Q ss_pred HHHHhCC--CceEEEEecC-CC
Q 018009 172 CFRQFGD--RVSYWTTVNE-PN 190 (362)
Q Consensus 172 ~~~~~~d--~v~~w~t~NE-p~ 190 (362)
++++||+ +|-+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567775 7999999999 66
No 77
>PRK03705 glycogen debranching enzyme; Provisional
Probab=65.65 E-value=14 Score=39.95 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=37.6
Q ss_pred HHHHHHcCCCeeeecc--c---------------c-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 86 VKLMADTGLDAYRFSI--S---------------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 86 i~l~~~lG~~~~R~si--~---------------W-------~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
|+-+|+||++++=+.= + | -.++|. -|.-....++-++++|++|+++||++|+++.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~-ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPA-YASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccc-cCCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 8999999999997641 1 1 122222 1211112466799999999999999999854
No 78
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=65.29 E-value=22 Score=35.43 Aligned_cols=107 Identities=11% Similarity=-0.032 Sum_probs=68.5
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCC--CcHhHHhh-----
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD--LPQALEDE----- 152 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~--~P~~l~~~----- 152 (362)
-.++|++.+.+.|++.+|+.++-|.+.-.. -+.-.++.++...+.|+.+++.|+++.+++-... -|..+.+-
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~ 151 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAE 151 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHH
Confidence 358999999999999999998877664321 1322345788999999999999999988875421 12222210
Q ss_pred -h----------CCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 153 -Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 153 -~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
. -|-. .++.+.++++.+.++++ ..--+...|-..+
T Consensus 152 ~~g~~~i~l~DT~G~~---~P~~v~~li~~l~~~~~-~~l~~H~Hnd~Gl 197 (363)
T TIGR02090 152 EAGADRINIADTVGVL---TPQKMEELIKKLKENVK-LPISVHCHNDFGL 197 (363)
T ss_pred hCCCCEEEEeCCCCcc---CHHHHHHHHHHHhcccC-ceEEEEecCCCCh
Confidence 1 1222 34566666666666664 1222456676654
No 79
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=64.90 E-value=28 Score=35.78 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=60.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcH----hHHh---h---
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ----ALED---E--- 152 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~----~l~~---~--- 152 (362)
++|++...+.|++.+|+.++-+.+. -..+.|+.++++|+.+.+++..-+-|. .+.+ +
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~ 165 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQE 165 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 5567999999999999998666541 256689999999999888777655562 1111 1
Q ss_pred h----------CCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 153 Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 153 ~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
. .|..+|. ...+.++.+-++++ ..-.+.+.|-..+
T Consensus 166 ~Gad~I~i~Dt~G~l~P~---~v~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 166 MGADSICIKDMAGILTPY---VAYELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred cCCCEEEEcCCCCCCCHH---HHHHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 0 3455543 55556666666665 3334567777665
No 80
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=64.33 E-value=19 Score=34.22 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=40.9
Q ss_pred cHHHHHHHHHcCCCeeeecccccc-cccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
-+|.++.|+++|++.+-++++-+. +.+.-.+.. .++.+.+.++.++++||.+.+.+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 489999999999999999988221 333211222 36778899999999999865543
No 81
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=63.78 E-value=24 Score=34.86 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=61.5
Q ss_pred CccccCcHHHHHHHHHcCCCeeeecccccccccC------CCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhH
Q 018009 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPN------GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQAL 149 (362)
Q Consensus 76 ~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~------g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l 149 (362)
++.+-.-++=++.++++|++-+-+|+ +-+.|. |...+| +++..++.+.+.+.||..++ .|.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv--~aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlI------aPv~l 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSV--DALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLI------APVWL 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeec--ccCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEE------eeeec
Confidence 44455667788999999999666666 345444 223567 88999999999999999998 48887
Q ss_pred HhhhCCCCCchhHHHHHHHHHHHH
Q 018009 150 EDEYGGWINRTIVKDFTAYADVCF 173 (362)
Q Consensus 150 ~~~~gg~~~~~~~~~f~~ya~~~~ 173 (362)
- | .|.+-...+.+||+.+-
T Consensus 266 P----G-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 P----G-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred C----C-cChHHHHHHHHHHHHhC
Confidence 2 3 56666888889988764
No 82
>PLN02784 alpha-amylase
Probab=63.32 E-value=15 Score=40.62 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=46.6
Q ss_pred ccccCcHHHHHHHHHcCCCeeeecccccccccCCCCC-----CChh--hhHHHHHHHHHHHHcCCeeEEee
Q 018009 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 77 d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~-----~n~~--~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
.+|....+.++.+++||++++=++=...-..+.|-.. +|.. ..+-++++|++|+++||++++++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999999999998775443333333111 1221 24568999999999999999984
No 83
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=63.14 E-value=46 Score=32.76 Aligned_cols=106 Identities=18% Similarity=0.157 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCe--eeecccccccccCCCCCCChhhhHHH--HHHHHHHHHcCCeeEEeecCCCCc--------HhHH
Q 018009 83 KEDVKLMADTGLDA--YRFSISWSRLIPNGRGPVNPKGLQYY--NNLINELISYGIQPHVTLHHFDLP--------QALE 150 (362)
Q Consensus 83 ~eDi~l~~~lG~~~--~R~si~W~ri~P~g~g~~n~~~~~~y--~~~i~~l~~~Gi~p~vtL~H~~~P--------~~l~ 150 (362)
++-++.+++.|+.. +=+.+.|..- .+.=.+|.+.+--- +++|+.|++.|++.++.++-+-.+ .+-+
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~--~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e 104 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDR--RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDR 104 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccC--ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHH
Confidence 34455555555443 3344445321 11122333333334 789999999999988887644222 2211
Q ss_pred hh-------------h--------C---CCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 151 DE-------------Y--------G---GWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 151 ~~-------------~--------g---g~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
.. | + .++|++..+.|.+..+.+...+| -.-+|.=+|||..
T Consensus 105 ~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~Ep~~ 168 (339)
T cd06602 105 GLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP-FDGLWIDMNEPSN 168 (339)
T ss_pred HHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC-CcEEEecCCCCch
Confidence 10 0 1 25678888888777776665543 3466789999974
No 84
>PRK10785 maltodextrin glucosidase; Provisional
Probab=62.29 E-value=19 Score=38.35 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=39.0
Q ss_pred cHHHHHHHHHcCCCeeeeccc-------------ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 82 YKEDVKLMADTGLDAYRFSIS-------------WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~-------------W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
..+-++-+++||++++=++=- +-+|.|. -| ..+-++++|++++++||++|+++-
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~-~G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQ-LG-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 455688999999999987631 2223222 12 245688999999999999999864
No 85
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=62.23 E-value=46 Score=33.13 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=55.2
Q ss_pred HHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHH
Q 018009 90 ADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA 169 (362)
Q Consensus 90 ~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya 169 (362)
.+.|++.+|+ - ||.+-. --+..+++++.++++|+-.=+...|-.++.-+.++||+-+.+..++.-.+++
T Consensus 98 ~~~G~~~iRI-------N---PGNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~ 166 (360)
T PRK00366 98 AEAGADALRI-------N---PGNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHA 166 (360)
T ss_pred HHhCCCEEEE-------C---CCCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4669999854 3 455531 0257889999999999999999999999999999986544455667667777
Q ss_pred HHHH
Q 018009 170 DVCF 173 (362)
Q Consensus 170 ~~~~ 173 (362)
+.+-
T Consensus 167 ~~le 170 (360)
T PRK00366 167 KILE 170 (360)
T ss_pred HHHH
Confidence 6653
No 86
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=62.09 E-value=37 Score=31.53 Aligned_cols=77 Identities=17% Similarity=0.380 Sum_probs=52.7
Q ss_pred ccccCcHHHHHHHHHcCCCeeee----------------------cccccccccCCCCCCChhhhHHHHHHHHHHHHcCC
Q 018009 77 DGYHKYKEDVKLMADTGLDAYRF----------------------SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGI 134 (362)
Q Consensus 77 d~~~~~~eDi~l~~~lG~~~~R~----------------------si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi 134 (362)
+---.-+.-|+++++||.+++.| ++ | +||. |-+| ++.+.+++..+++.|+
T Consensus 132 ~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT--GGId---l~Nf~~I~~i~ldaGv 203 (236)
T TIGR03581 132 EAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT--GGID---LDNFEEIVQIALDAGV 203 (236)
T ss_pred CceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC--CCcc---HHhHHHHHHHHHHcCC
Confidence 33445678899999999999875 33 3 5777 6678 8889999999999999
Q ss_pred eeEEeecCCCCcHhHHhhhCCCCCchhHHHH
Q 018009 135 QPHVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (362)
Q Consensus 135 ~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f 165 (362)
+-++ .|. =..+.|+-.|-+.++-+...
T Consensus 204 ~kvi--PHI--YssiIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 204 EKVI--PHV--YSSIIDKETGNTRVEDVKQL 230 (236)
T ss_pred Ceec--ccc--ceeccccccCCCCHHHHHHH
Confidence 8773 341 11122343566666654443
No 87
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=61.99 E-value=66 Score=31.82 Aligned_cols=74 Identities=20% Similarity=0.286 Sum_probs=56.9
Q ss_pred HHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHH
Q 018009 89 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAY 168 (362)
Q Consensus 89 ~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~y 168 (362)
..+.|+..+|+ - ||.+-.+ +...++++.++++|+-.=+...|-.+..-+.++|++-+.+..++--.++
T Consensus 91 ~~~~g~~k~RI-------N---PGNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~ 158 (361)
T COG0821 91 AAECGVDKVRI-------N---PGNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEH 158 (361)
T ss_pred hhhcCcceEEE-------C---CcccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHH
Confidence 45667888875 3 4444322 2789999999999999999999999999999999877666667766677
Q ss_pred HHHHHH
Q 018009 169 ADVCFR 174 (362)
Q Consensus 169 a~~~~~ 174 (362)
++.+-+
T Consensus 159 a~~~e~ 164 (361)
T COG0821 159 AELLEE 164 (361)
T ss_pred HHHHHH
Confidence 766544
No 88
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=61.03 E-value=18 Score=37.90 Aligned_cols=63 Identities=13% Similarity=0.294 Sum_probs=39.9
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccc-cCCC-----CCCChh--hhHHHHHHHHHHHHcCCeeEEeec
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLI-PNGR-----GPVNPK--GLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~-P~g~-----g~~n~~--~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
..-..+-++-+++||++++=++=-..--. ..|- -.+|++ ..+-++++|++++++||++|+++-
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 33445668899999999987663211100 0000 022322 346689999999999999999843
No 89
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=60.16 E-value=34 Score=36.40 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCc----HhHHhh------
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP----QALEDE------ 152 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P----~~l~~~------ 152 (362)
++|++...+.|++.+|+..+.+.+ +-....|+.++++|+...+++.+-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 445899999999999999776654 236677888899999988887765555 221110
Q ss_pred h----------CCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 153 Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 153 ~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
. .|...| ....+.++.+-++++ ..-...+.|-..+
T Consensus 161 ~Gad~I~i~Dt~G~~~P---~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 161 MGVDSICIKDMAGILTP---KAAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred cCCCEEEECCCCCCcCH---HHHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 0 344443 456666666667775 2234678887765
No 90
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=60.09 E-value=2.7e+02 Score=30.63 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=89.3
Q ss_pred HHHcCCCeeeec---c-cccccccCCCCCCChhhhHHHHHHHHHHHHc-CCeeEEeecCCCC-----cHhHHh----hhC
Q 018009 89 MADTGLDAYRFS---I-SWSRLIPNGRGPVNPKGLQYYNNLINELISY-GIQPHVTLHHFDL-----PQALED----EYG 154 (362)
Q Consensus 89 ~~~lG~~~~R~s---i-~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~-Gi~p~vtL~H~~~-----P~~l~~----~~g 154 (362)
.++-|+--+=.. + .-.++.|...|-++.+-++.++++++.++++ |-+.++=|.|-+- +.|... .-+
T Consensus 440 rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~ 519 (765)
T PRK08255 440 RALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEG 519 (765)
T ss_pred HHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccC
Confidence 444455544222 1 3345666556788999999999999999999 6999999999431 112100 002
Q ss_pred CCC-------------------C----chhHHHHHHHHHHHHHHhC-CCceEEEEecCCCcccccccccCCC-CCCC--C
Q 018009 155 GWI-------------------N----RTIVKDFTAYADVCFRQFG-DRVSYWTTVNEPNAFANLGYDYGIA-PPQR--C 207 (362)
Q Consensus 155 g~~-------------------~----~~~~~~f~~ya~~~~~~~~-d~v~~w~t~NEp~~~~~~gy~~g~~-~Pg~--~ 207 (362)
||. + .++++.|++=|+.+.+. | |-|. +-.-+||+...| -|.. +
T Consensus 520 ~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~a-GfDgve---------ih~ahGyLl~qFlsp~~N~R 589 (765)
T PRK08255 520 NWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAEA-GFDWLE---------LHCAHGYLLSSFISPLTNQR 589 (765)
T ss_pred CCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHc-CCCEEE---------EecccchHHHHhcCCCCCCC
Confidence 221 0 13566677666555442 3 3222 224567876654 3331 1
Q ss_pred CCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccCCCCceEEEeeecCccccCCCcHHHH
Q 018009 208 SSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTNSTEDA 271 (362)
Q Consensus 208 ~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~~~~gkIG~~~~~~~~yP~s~~p~D~ 271 (362)
.+ .+|- .+-|-+.--.++++++|+..+. +-.||+-++...+.+..-+++|.
T Consensus 590 tD----~yGG-------slenR~r~~~eiv~~ir~~~~~--~~~v~~ri~~~~~~~~g~~~~~~ 640 (765)
T PRK08255 590 TD----EYGG-------SLENRLRYPLEVFRAVRAVWPA--EKPMSVRISAHDWVEGGNTPDDA 640 (765)
T ss_pred CC----CCCC-------CHHHHhHHHHHHHHHHHHhcCC--CCeeEEEEccccccCCCCCHHHH
Confidence 11 1111 2334455556688888886542 34688888865554544456664
No 91
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=59.94 E-value=7.2 Score=23.53 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=11.9
Q ss_pred ChhhHHHHHHHHHHHH
Q 018009 1 MMLRLSFLLMYLLNLA 16 (362)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (362)
||-||+||++.++.++
T Consensus 6 mmKkil~~l~a~~~La 21 (25)
T PF08139_consen 6 MMKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5789999988776543
No 92
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=59.90 E-value=30 Score=34.45 Aligned_cols=61 Identities=21% Similarity=0.133 Sum_probs=47.1
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeecC
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (362)
-++|++.+.+.|++.+|+.++-|.+.-.- -+.--++.++...+.|+.++++|+++.++...
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed 135 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED 135 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC
Confidence 38999999999999999999877543221 12223467888999999999999998877653
No 93
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=59.88 E-value=59 Score=31.44 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=52.4
Q ss_pred HHHHHcCCCeeeeccc--ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHH
Q 018009 87 KLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (362)
Q Consensus 87 ~l~~~lG~~~~R~si~--W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~ 164 (362)
+.+++.|++++-+++- -....|.-.|......-....+.|..|+++|++++|.+--+.-... -.+...++.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~~ 91 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSADQ 91 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHHH
Confidence 5677889999987753 2233333112111011234567899999999999998854332110 014457888
Q ss_pred HHHHHHHHHHHhC
Q 018009 165 FTAYADVCFRQFG 177 (362)
Q Consensus 165 f~~ya~~~~~~~~ 177 (362)
|++....+.++|+
T Consensus 92 ~~~a~~~~i~~y~ 104 (294)
T cd06543 92 LAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888887
No 94
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=59.63 E-value=17 Score=34.56 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=46.4
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
-.+|++...+.|++.+|+.++=|...-.. -+.=-++.++...+++..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 36799999999999999998655432221 1222356799999999999999999998884
No 95
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=59.34 E-value=66 Score=31.28 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=47.4
Q ss_pred CChhhhHHHHHHHHHHHHcCCeeEEeecCC---CCcHhHHhh---h-----------------CC---CCCchhHHHHHH
Q 018009 114 VNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE---Y-----------------GG---WINRTIVKDFTA 167 (362)
Q Consensus 114 ~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~~l~~~---~-----------------gg---~~~~~~~~~f~~ 167 (362)
+|.+.+--.+++|+.|+++|++.++.++-+ +.+.+-+.+ | ++ |+|++..+.|.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 455555557799999999999998876422 122211100 0 11 567777776665
Q ss_pred HHHHHHHHhCCCceEEEEecCCCccc
Q 018009 168 YADVCFRQFGDRVSYWTTVNEPNAFA 193 (362)
Q Consensus 168 ya~~~~~~~~d~v~~w~t~NEp~~~~ 193 (362)
..+..+...| ---+|+=+|||....
T Consensus 140 ~~~~~~~~~G-vdg~w~D~~Ep~~~~ 164 (319)
T cd06591 140 QLKKNYYDKG-VDAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHHhhcCC-CcEEEecCCCCCccC
Confidence 5444333332 356779999998653
No 96
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=59.32 E-value=23 Score=35.17 Aligned_cols=94 Identities=17% Similarity=0.276 Sum_probs=58.5
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCCeeE-EeecCCCCcHhHHhhhCCCC
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWI 157 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g---~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~gg~~ 157 (362)
-+|.++.++++|++ |+||...-+-++- -|+.. ..+-+.+.|+.+++.|+..+ +++. +++|.
T Consensus 98 t~e~l~~l~~~G~~--rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVN--RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------- 162 (374)
T ss_pred CHHHHHHHHHcCCC--EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 46789999999999 4555444443331 13321 25567889999999999744 5553 55552
Q ss_pred CchhHHHHHHHHHHHHHHhCCCceEEEEecCCCcc
Q 018009 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (362)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 192 (362)
++.+.|.+-.+.+.+.=-++|..+...-+|+..
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 135566666666655433666666545577754
No 97
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=58.82 E-value=69 Score=31.14 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCC--eeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCC-----CcHhHHhh----
Q 018009 84 EDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD-----LPQALEDE---- 152 (362)
Q Consensus 84 eDi~l~~~lG~~--~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~-----~P~~l~~~---- 152 (362)
+-++.+++.++. ++=+.+.|..- .+.=.+|.+.+--.+++|+.|++.|++.++.++-+- .|...+..
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~~~--~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~ 105 (317)
T cd06600 28 EVVDIMQKEGFPYDVVFLDIHYMDS--YRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGK 105 (317)
T ss_pred HHHHHHHHcCCCcceEEEChhhhCC--CCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCE
Confidence 334455555543 34444445321 111234555555567899999999999887765331 12221110
Q ss_pred --------------------hCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCcc
Q 018009 153 --------------------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (362)
Q Consensus 153 --------------------~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 192 (362)
+-.|+|++..+.|.+..+.+....| -.-+|+=+|||..+
T Consensus 106 ~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~g-vdg~w~D~~Ep~~~ 164 (317)
T cd06600 106 FCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQG-VDGIWLDMNEPSDF 164 (317)
T ss_pred EEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCC-CceEEeeCCCCccH
Confidence 0125788888888887776654443 34577899999743
No 98
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=58.82 E-value=60 Score=31.85 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=51.6
Q ss_pred ChhhhHHHHHHHHHHHHcCCeeEEeecCCC-----CcHhHHhh------------------------hCCCCCchhHHHH
Q 018009 115 NPKGLQYYNNLINELISYGIQPHVTLHHFD-----LPQALEDE------------------------YGGWINRTIVKDF 165 (362)
Q Consensus 115 n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~-----~P~~l~~~------------------------~gg~~~~~~~~~f 165 (362)
|++.+--.+++|+.|++.|++.++.++-+- .|..-+.+ +-.++|++.++.|
T Consensus 59 d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 138 (339)
T cd06603 59 DKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWW 138 (339)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHH
Confidence 333333356899999999999888876442 22221111 0125788899999
Q ss_pred HHHHHHHHHHhC-CCceEEEEecCCCccc
Q 018009 166 TAYADVCFRQFG-DRVSYWTTVNEPNAFA 193 (362)
Q Consensus 166 ~~ya~~~~~~~~-d~v~~w~t~NEp~~~~ 193 (362)
.+..+.+....+ +-+-.|+=+|||.++.
T Consensus 139 ~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 139 ASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HHHHHHHhhcccCCCceEEeccCCccccC
Confidence 888877665432 3457889999998753
No 99
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.73 E-value=67 Score=31.20 Aligned_cols=107 Identities=17% Similarity=0.281 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCC--CeeeecccccccccC--CCC--CCChhhhHHHHHHHHHHHHcCCeeEEeecCC---CCcHhHHhh-
Q 018009 83 KEDVKLMADTGL--DAYRFSISWSRLIPN--GRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE- 152 (362)
Q Consensus 83 ~eDi~l~~~lG~--~~~R~si~W~ri~P~--g~g--~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~~l~~~- 152 (362)
.+-++.+++.|+ +++=+++.|...... ..| .+|++-+---+++|+.|++.|++.++.++-+ +.|..-+.+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 444566666665 455555667543321 011 2444455556789999999999999888644 333321110
Q ss_pred --h-------------------C---CCCCchhHHHHHHHHHHHHHHhCCCc-eEEEEecCCCcc
Q 018009 153 --Y-------------------G---GWINRTIVKDFTAYADVCFRQFGDRV-SYWTTVNEPNAF 192 (362)
Q Consensus 153 --~-------------------g---g~~~~~~~~~f~~ya~~~~~~~~d~v-~~w~t~NEp~~~ 192 (362)
| + .++|++..+.|.+..+.+ +..-| -+|.=+|||...
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 0 1 256888888887776655 22234 457899999754
No 100
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=58.27 E-value=41 Score=33.32 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=43.5
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee
Q 018009 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
++.++++|.+++-+-+-|. |+.+..+|..-++...++.++|++.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999999887 553334577789999999999999999988854
No 101
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=58.24 E-value=57 Score=31.76 Aligned_cols=108 Identities=16% Similarity=0.261 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCC-eeeeccc-cc-ccc-c-CCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCC
Q 018009 83 KEDVKLMADTGLD-AYRFSIS-WS-RLI-P-NGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI 157 (362)
Q Consensus 83 ~eDi~l~~~lG~~-~~R~si~-W~-ri~-P-~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~ 157 (362)
+|.+++|+++|++ .+=++++ -+ ++. . -++|. + .+-+.+.++.++++||.+.+.+. +++| +..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~-t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P--------~~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGS-T---FEDFIRAAELARKYGAGVKAYLL-FKPP--------FLS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCC-C---HHHHHHHHHHHHHcCCcEEEEEE-ecCC--------CCC
Confidence 7889999999987 4666652 22 222 1 12232 3 56788999999999999777664 3444 122
Q ss_pred CchhHHHHHHHHHHHHHHhCCCceEEEEecCCCcccccccccCCCCC
Q 018009 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPP 204 (362)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~P 204 (362)
..+.++.+.+.++.+.+. ++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~l-~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIPV-TDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHhc-CCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 236778888888877654 4777776665566653333355566644
No 102
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=58.09 E-value=7.4 Score=28.66 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=31.8
Q ss_pred cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCC
Q 018009 104 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF 143 (362)
Q Consensus 104 ~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~ 143 (362)
+++.|. ++.=.+++++..-+++..|.++|| +++.|++-
T Consensus 19 s~l~p~-~~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPK-EGADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCcc-cccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 577888 565567899999999999999999 88888763
No 103
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=57.98 E-value=36 Score=34.07 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
++|++.+.+.|++.+|+.++-|.+.-.- -+.--++.++...+.|+.+++.|+++.++..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7899999999999999999877653221 1333456789999999999999999988864
No 104
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=57.53 E-value=1e+02 Score=30.42 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=59.2
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec--CCCCcHhHHhh------h
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--HFDLPQALEDE------Y 153 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~--H~~~P~~l~~~------~ 153 (362)
..+|++...+.|++.+|+....+.. +...+.|+.+++.|++..+.+. |...|..+.+. +
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~ 155 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESY 155 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhc
Confidence 3689999999999999998755443 2356899999999999887773 44444443321 1
Q ss_pred ----------CCCCCchhHHHHHHHHHHHHHHhCCCce-EEEEecCCC
Q 018009 154 ----------GGWINRTIVKDFTAYADVCFRQFGDRVS-YWTTVNEPN 190 (362)
Q Consensus 154 ----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~-~w~t~NEp~ 190 (362)
.|-. .++...++++.+-+++++.++ -+...|-..
T Consensus 156 Ga~~i~i~DT~G~~---~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlG 200 (333)
T TIGR03217 156 GADCVYIVDSAGAM---LPDDVRDRVRALKAVLKPETQVGFHAHHNLS 200 (333)
T ss_pred CCCEEEEccCCCCC---CHHHHHHHHHHHHHhCCCCceEEEEeCCCCc
Confidence 2222 345666666666666653332 223444443
No 105
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=57.24 E-value=18 Score=41.89 Aligned_cols=63 Identities=19% Similarity=0.324 Sum_probs=40.3
Q ss_pred ccCcH--HHHHHHHHcCCCeeeecccccccc-----cCC-C---C-------CCCh----hhhHHHHHHHHHHHHcCCee
Q 018009 79 YHKYK--EDVKLMADTGLDAYRFSISWSRLI-----PNG-R---G-------PVNP----KGLQYYNNLINELISYGIQP 136 (362)
Q Consensus 79 ~~~~~--eDi~l~~~lG~~~~R~si~W~ri~-----P~g-~---g-------~~n~----~~~~~y~~~i~~l~~~Gi~p 136 (362)
|.... +.|+-+|+||++++=+.=-..... +.| . | .+|+ ...+-++++|++|+++||++
T Consensus 184 ~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~V 263 (1221)
T PRK14510 184 FAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAV 263 (1221)
T ss_pred HhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEE
Confidence 44444 668899999999997652111110 000 0 0 1111 14567999999999999999
Q ss_pred EEeec
Q 018009 137 HVTLH 141 (362)
Q Consensus 137 ~vtL~ 141 (362)
|+++.
T Consensus 264 ILDvV 268 (1221)
T PRK14510 264 ILDVV 268 (1221)
T ss_pred EEEEc
Confidence 99843
No 106
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=56.27 E-value=50 Score=31.53 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=60.5
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeecC-CCCcHhHHhhhCCCCCc
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWINR 159 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H-~~~P~~l~~~~gg~~~~ 159 (362)
-.+|++...+.|++.+++.++=|...-.- -+.--++.++...+.++.++++|+++.+++.. |+.| +.|-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~~-- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGEV-- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCCC--
Confidence 37899999999999999998666532110 12223567899999999999999999988763 4444 22323
Q ss_pred hhHHHHHHHHHHHHH
Q 018009 160 TIVKDFTAYADVCFR 174 (362)
Q Consensus 160 ~~~~~f~~ya~~~~~ 174 (362)
.++.+.++++.+.+
T Consensus 147 -~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 -PPERVAEVAERLLD 160 (274)
T ss_pred -CHHHHHHHHHHHHH
Confidence 46677788877765
No 107
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=56.18 E-value=62 Score=32.61 Aligned_cols=52 Identities=12% Similarity=0.323 Sum_probs=41.7
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
..|++||++.+++||+.|=+.|- . ...+. .+....+++...+.|.+.++.+.
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~-~d~~~---~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------S-SDSWQ---PDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------c-CCccc---HHHHHHHHHHHHhcCCEEEEEec
Confidence 45899999999999999999886 1 22334 45677899999999999988775
No 108
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=55.88 E-value=16 Score=34.36 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHcCCeeEEeecCCC--------------CcHhHHhh----------------hCC----CCCch---h
Q 018009 119 LQYYNNLINELISYGIQPHVTLHHFD--------------LPQALEDE----------------YGG----WINRT---I 161 (362)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~vtL~H~~--------------~P~~l~~~----------------~gg----~~~~~---~ 161 (362)
.+.++.+|+..+++|..+|+||.=.+ .|.|-..+ .+| ..+|+ .
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 46799999999999999999986221 12111000 011 11232 1
Q ss_pred HHHHHHHHHHHHHHhCCC-----ceEEEEecCCCcc
Q 018009 162 VKDFTAYADVCFRQFGDR-----VSYWTTVNEPNAF 192 (362)
Q Consensus 162 ~~~f~~ya~~~~~~~~d~-----v~~w~t~NEp~~~ 192 (362)
...-.+++..+..+||.. |++|..-|||.+.
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW 138 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLW 138 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGH
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEecCchHhh
Confidence 123445577777777754 9999999999974
No 109
>PRK14705 glycogen branching enzyme; Provisional
Probab=55.52 E-value=73 Score=37.02 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=55.4
Q ss_pred HHHHHHcCCCeeeec-c-------cccccccCCCCCCCh--hhhHHHHHHHHHHHHcCCeeEEeec--CCCCcHhHHhhh
Q 018009 86 VKLMADTGLDAYRFS-I-------SWSRLIPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH--HFDLPQALEDEY 153 (362)
Q Consensus 86 i~l~~~lG~~~~R~s-i-------~W~ri~P~g~g~~n~--~~~~~y~~~i~~l~~~Gi~p~vtL~--H~~~P~~l~~~~ 153 (362)
++-+|+||++++=+. | +|- -.|.+--.++. -..+=++++|++|+++||.+|+++- |+..=.|....+
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f 850 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF 850 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc
Confidence 689999999999654 2 241 11111000110 1244588999999999999999854 552112211111
Q ss_pred ----------------CCC-------CCchhHHHHHHHHHHHHHHhC
Q 018009 154 ----------------GGW-------INRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 154 ----------------gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (362)
..| .++++.+.+.+=+..-+++|+
T Consensus 851 dg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 851 DGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 112 356777888888888888886
No 110
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=55.37 E-value=47 Score=31.24 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=39.6
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
..+|++..++.|++.+|+.++.+.+ +-..+.++.+++.|+++.+++.
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s~~-------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCTEA-------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechhhH-------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 3699999999999999998876643 2357899999999999999885
No 111
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=55.08 E-value=81 Score=30.41 Aligned_cols=63 Identities=16% Similarity=0.362 Sum_probs=45.6
Q ss_pred cHHHHHHHHHcCCCeeeeccc----ccc---cccC------------CCCCCChhhhHHHHHHHHHHHHcCCeeEEeecC
Q 018009 82 YKEDVKLMADTGLDAYRFSIS----WSR---LIPN------------GRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~----W~r---i~P~------------g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (362)
.++-|+.|+..++|.+.+-++ |+- ..|+ +.|.+.++ =++++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEEec--
Confidence 567799999999999987775 632 2232 12456644 47799999999999999877
Q ss_pred CCCcHhHH
Q 018009 143 FDLPQALE 150 (362)
Q Consensus 143 ~~~P~~l~ 150 (362)
|+|....
T Consensus 93 -D~PGH~~ 99 (303)
T cd02742 93 -DMPGHST 99 (303)
T ss_pred -cchHHHH
Confidence 4675543
No 112
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=55.06 E-value=78 Score=33.87 Aligned_cols=98 Identities=11% Similarity=0.104 Sum_probs=59.0
Q ss_pred cCcHHHH-HHHHHcCCCeeeec-cccccc------ccCCCCCCCh--hhhHHHHHHHHHHHHcCCeeEEeec--CCCC--
Q 018009 80 HKYKEDV-KLMADTGLDAYRFS-ISWSRL------IPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH--HFDL-- 145 (362)
Q Consensus 80 ~~~~eDi-~l~~~lG~~~~R~s-i~W~ri------~P~g~g~~n~--~~~~~y~~~i~~l~~~Gi~p~vtL~--H~~~-- 145 (362)
.-..+.+ +.+++||++++=+. |..+.- .|..--.++. -..+-++++|++|+++||++|+++- |...
T Consensus 156 ~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 156 RELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 3344564 88999999999884 433211 0010001111 1234588999999999999999854 5431
Q ss_pred ---------cHhHHh-----hhCCC-------CCchhHHHHHHHHHHHHHHhC
Q 018009 146 ---------PQALED-----EYGGW-------INRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 146 ---------P~~l~~-----~~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (362)
|.+... .+..| .++++.+.+.+-++.-++.|+
T Consensus 236 ~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 236 HGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred chhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111100 00112 357888889998898888876
No 113
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=54.35 E-value=33 Score=31.73 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=41.7
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCC--CCCCChhhhHHHHHHHHHHHHcCCeeEEee-cCCCCc
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG--RGPVNPKGLQYYNNLINELISYGIQPHVTL-HHFDLP 146 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL-~H~~~P 146 (362)
.+.+++=|++++++|.+.+|+...+. |.. ..+.....++..+++.+.+.+.||...+=. .+++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 35566778999999999998644321 221 011223345678888888999999877743 444444
No 114
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=54.12 E-value=61 Score=35.68 Aligned_cols=104 Identities=16% Similarity=0.328 Sum_probs=66.4
Q ss_pred HHHHHHHcCCC--eeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec---CCCCc-----------Hh
Q 018009 85 DVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLP-----------QA 148 (362)
Q Consensus 85 Di~l~~~lG~~--~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~---H~~~P-----------~~ 148 (362)
=++.++++|+. ..=..|+|-.-.. +=.+|..++-...++++.|+++|++-++++. +-+.. .|
T Consensus 316 vv~~~~~agiPld~~~~DiDyMd~yk--DFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v~ 393 (805)
T KOG1065|consen 316 VVENYRAAGIPLDVIVIDIDYMDGYK--DFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDVL 393 (805)
T ss_pred HHHHHHHcCCCcceeeeehhhhhccc--ceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhcee
Confidence 35667777776 5555566653332 2346776777789999999999999999987 22222 11
Q ss_pred HHhh----------hCC------CCCchhHHHHHHHHHHHHHHhCCCce---EEEEecCCCcccc
Q 018009 149 LEDE----------YGG------WINRTIVKDFTAYADVCFRQFGDRVS---YWTTVNEPNAFAN 194 (362)
Q Consensus 149 l~~~----------~gg------~~~~~~~~~f~~ya~~~~~~~~d~v~---~w~t~NEp~~~~~ 194 (362)
+.+. ..| ++|++++ .++...+++|.+.|. +|+-+|||.-+..
T Consensus 394 I~~~~g~~~~lg~vwP~~~~fpDftnp~~~----~Ww~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 394 IKNREGSPKMLGEVWPGSTAFPDFTNPAVV----EWWLDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eecccCchhhhcccCCCcccccccCCchHH----HHHHHHHHhhcccCCccceEEECCCcccCCC
Confidence 1110 012 4455444 444556668888775 8999999986554
No 115
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=54.05 E-value=64 Score=32.80 Aligned_cols=88 Identities=15% Similarity=0.343 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCCeeeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeecCCCCcHh--HHhhhCCCC
Q 018009 83 KEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQA--LEDEYGGWI 157 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~--l~~~~gg~~ 157 (362)
.+|+..+.++.--..|+++ .|.. +|.+.++ +.++++||..- +...-|..|+- -.=++|...
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 5788888888777777775 7821 3644444 88999999988 76666766632 011346777
Q ss_pred Cc--hhHHHHHHHHHHHH---HHhCCC-ceEEE
Q 018009 158 NR--TIVKDFTAYADVCF---RQFGDR-VSYWT 184 (362)
Q Consensus 158 ~~--~~~~~f~~ya~~~~---~~~~d~-v~~w~ 184 (362)
|+ ++.+...+-++.|. +..|.+ |..|+
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 76 47777888777664 556553 45553
No 116
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.52 E-value=1.1e+02 Score=29.66 Aligned_cols=108 Identities=14% Similarity=0.113 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCe--eeecccccccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeEEeecCCC---CcHhHHhhh--
Q 018009 83 KEDVKLMADTGLDA--YRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHFD---LPQALEDEY-- 153 (362)
Q Consensus 83 ~eDi~l~~~lG~~~--~R~si~W~ri~P~g~--g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~---~P~~l~~~~-- 153 (362)
.+-++.+++.|+.. +=+.+.|....-... =.+|.+.+--.+++|+.|++.|++.++.++-+- .|..-+.+-
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 44455666666533 333334543311001 123444444467899999999999988776432 222211100
Q ss_pred -----------------C------CCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 154 -----------------G------GWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 154 -----------------g------g~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
+ .++|++..+.|.+..+......| -.-+|+=+|||.+
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC-CcEEEecCCCCcc
Confidence 0 13577777777766654444433 2467788999974
No 117
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=53.48 E-value=47 Score=32.70 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=63.2
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHH
Q 018009 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (362)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~ 164 (362)
+.+.+|++|.+++.|=+=|. |+++-.+|..-.++.+++.++|++.||--++=+-.++.+. .+. .+++....
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~--~d~----~~~eyak~ 182 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI--SDN----NSAAYAKL 182 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc--ccc----ccHHHHhh
Confidence 57889999999999988776 6656678888899999999999999999998887665332 111 23333323
Q ss_pred HHHHHHHHHHHhCC---CceEE
Q 018009 165 FTAYADVCFRQFGD---RVSYW 183 (362)
Q Consensus 165 f~~ya~~~~~~~~d---~v~~w 183 (362)
--+.+-..++.|++ .|+.|
T Consensus 183 kP~~V~~amkefs~~~~gvDVl 204 (329)
T PRK04161 183 KPHKVNGAMKVFSDKRFGVDVL 204 (329)
T ss_pred ChHHHHHHHHHhccCCCCCcEE
Confidence 23334445566664 35555
No 118
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=53.32 E-value=44 Score=31.54 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=52.9
Q ss_pred HHHHHHHHHcC----CCeeeecccccccc--cCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCC
Q 018009 83 KEDVKLMADTG----LDAYRFSISWSRLI--PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW 156 (362)
Q Consensus 83 ~eDi~l~~~lG----~~~~R~si~W~ri~--P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~ 156 (362)
.+|++...+.| ++.+|+.++.+.+. -+ -+.--++.++...+.++.+++.|++..++..+ .+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYK-LKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 78999999999 99999987665543 22 12222346888899999999999987755431 222
Q ss_pred CCchhHHHHHHHHHHHHH
Q 018009 157 INRTIVKDFTAYADVCFR 174 (362)
Q Consensus 157 ~~~~~~~~f~~ya~~~~~ 174 (362)
. .++.+.+.++.+.+
T Consensus 140 ~---~~~~~~~~~~~~~~ 154 (268)
T cd07940 140 T---DLDFLIEVVEAAIE 154 (268)
T ss_pred C---CHHHHHHHHHHHHH
Confidence 2 35566777766654
No 119
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=53.27 E-value=25 Score=35.71 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCeeeecc--------------cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee--cC
Q 018009 84 EDVKLMADTGLDAYRFSI--------------SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--HH 142 (362)
Q Consensus 84 eDi~l~~~lG~~~~R~si--------------~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL--~H 142 (362)
+-++.+++||++++=++= .+.+|.|. .| .++-.+++|++++++||+.++++ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~-~G-----t~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPH-FG-----TEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 567889999999984431 12223232 22 46778999999999999999997 55
No 120
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=52.75 E-value=52 Score=31.28 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchh
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~ 161 (362)
+.+++.+++.|++.+|+.++=|...-. .-|.--++.++...+.++.+++.|+++.++.-+| .+ +. +..
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~~ 149 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KAN 149 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CCC
Confidence 368999999999999998865543211 1233335679999999999999999998876554 11 11 123
Q ss_pred HHHHHHHHHHHHH
Q 018009 162 VKDFTAYADVCFR 174 (362)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (362)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 5666777777655
No 121
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=52.27 E-value=52 Score=32.57 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=50.5
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHH
Q 018009 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (362)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~ 164 (362)
=|++|.+.|++-+=.|+ +.|++ -+...++.++++++.+.+.|++++|+.. |.-|.. -||. .+.++.
T Consensus 21 Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l~~ 86 (360)
T COG3589 21 YIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNLSR 86 (360)
T ss_pred HHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHHHH
Confidence 36788899988776665 34442 2335799999999999999999999995 887753 3543 334666
Q ss_pred HHHH
Q 018009 165 FTAY 168 (362)
Q Consensus 165 f~~y 168 (362)
|.+.
T Consensus 87 f~e~ 90 (360)
T COG3589 87 FQEL 90 (360)
T ss_pred HHHh
Confidence 6665
No 122
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=51.65 E-value=36 Score=34.29 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=63.4
Q ss_pred cHHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eEEeecCCCCcHhHHhhhCCCCC
Q 018009 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~~l~~~~gg~~~ 158 (362)
-++.++.++++|+|.+-+++ +-+ ++... -|+.. ..+-..+.++.+++.|+. +-++|. +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~-l~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg----------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLAL-CGRSH--RVKDIFAAVDLIHQAGIENFSLDLI-SGLPH----------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 46889999999999666665 222 12222 12211 244566889999999998 556765 56663
Q ss_pred chhHHHHHHHHHHHHHHhCCCceEEEEecCCCcccccccccCCC
Q 018009 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA 202 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~ 202 (362)
++.+.+.+=++.+.+-=.++|..+...-||...-...+..|.+
T Consensus 179 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 -QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred -CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 1244555545555544446788777777887644433444443
No 123
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=50.68 E-value=1.1e+02 Score=30.96 Aligned_cols=139 Identities=18% Similarity=0.220 Sum_probs=79.2
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccC---CCC--CCChhhh-HHHHHHHHHHHHcCCeeEEeec----------CCC
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPN---GRG--PVNPKGL-QYYNNLINELISYGIQPHVTLH----------HFD 144 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~---g~g--~~n~~~~-~~y~~~i~~l~~~Gi~p~vtL~----------H~~ 144 (362)
...+-++.++++|++.+-+.--|..---+ +-| .+|++-+ +-...+++.+++.||++=+=+- .-.
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~ 138 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYRE 138 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHh
Confidence 34556788899999999988899653111 002 1232222 1267999999999999765331 124
Q ss_pred CcHhHHhhhCC-------------CCCchhHHHHHHHHHHHHHHhCCCceEE-EEecCCCcccccccccCCCCCCCCCCc
Q 018009 145 LPQALEDEYGG-------------WINRTIVKDFTAYADVCFRQFGDRVSYW-TTVNEPNAFANLGYDYGIAPPQRCSSI 210 (362)
Q Consensus 145 ~P~~l~~~~gg-------------~~~~~~~~~f~~ya~~~~~~~~d~v~~w-~t~NEp~~~~~~gy~~g~~~Pg~~~~~ 210 (362)
.|.|+... ++ ..++++.+...+-...+++.++ |+|. .=+|..-. .++...
T Consensus 139 hPdw~l~~-~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g--idYiK~D~n~~~~-----------~~~~~~-- 202 (394)
T PF02065_consen 139 HPDWVLRD-PGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG--IDYIKWDFNRDIT-----------EAGSPS-- 202 (394)
T ss_dssp SBGGBTCC-TTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT---SEEEEE-TS-TT-----------S-SSTT--
T ss_pred Cccceeec-CCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC--CCEEEeccccCCC-----------CCCCCC--
Confidence 68887531 11 3467778887887777777775 4444 34454211 111110
Q ss_pred cccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccC
Q 018009 211 NHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQD 246 (362)
Q Consensus 211 ~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~ 246 (362)
.. ...|...++--...+.+|+.+|+
T Consensus 203 ---------~~--~~~~~~~~~~y~l~~~L~~~~P~ 227 (394)
T PF02065_consen 203 ---------LP--EGYHRYVLGLYRLLDRLRARFPD 227 (394)
T ss_dssp ---------S---GHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ---------ch--HHHHHHHHHHHHHHHHHHHhCCC
Confidence 01 45676666666677888888874
No 124
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.48 E-value=62 Score=31.90 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecC
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (362)
.+|++...+.|++.+|+...+++. +.-.+.|+.+++.|++..+++..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEe
Confidence 589999999999999998865553 23578999999999999988763
No 125
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=50.29 E-value=35 Score=38.02 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=42.1
Q ss_pred ccCcHHHHHHHHHcCCCeeeecc---------------cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSI---------------SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si---------------~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
+....+-+..+++||++++=+|= ++.+|.|. -| +.+-+++++++++++||.+|+++-
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~-lG-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPE-LG-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCC-CC-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 34467788899999999986653 33344444 22 345689999999999999999863
No 126
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=49.88 E-value=82 Score=30.96 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=49.4
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 018009 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (362)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (362)
.+.+|++|.+++.|=+=|. |+++..+|..-.++.+++.++|++.||--++=+-.++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 6789999999999988776 675667888889999999999999999988877665543
No 127
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.70 E-value=1.7e+02 Score=28.10 Aligned_cols=145 Identities=19% Similarity=0.166 Sum_probs=79.6
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCC---cHhHH---------hhhCCCC-----C----chhHH
Q 018009 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL---PQALE---------DEYGGWI-----N----RTIVK 163 (362)
Q Consensus 105 ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~---P~~l~---------~~~gg~~-----~----~~~~~ 163 (362)
+..|...|-++++-+..++++++.++++|-..++=|.|-+- |.... ....... + .++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~ 141 (327)
T cd02803 62 KGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIE 141 (327)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHH
Confidence 34555457789999999999999999999999999998531 11000 0000000 1 24677
Q ss_pred HHHHHHHHHHHHhCCCceEEEEecCCCcccccccccCCC-CCCC--CCCccccCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 018009 164 DFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA-PPQR--CSSINHCSRGNSSTEPYITVHHVLLAHASVARLY 240 (362)
Q Consensus 164 ~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~ 240 (362)
.|++-|+.+.+.==|-|. +-.-+||+...| -|.. +.+ ..+.+ +-|-..--.+.++.+
T Consensus 142 ~~~~aA~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R~d----~yGgs-------~enr~r~~~eii~av 201 (327)
T cd02803 142 DFAAAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKRTD----EYGGS-------LENRARFLLEIVAAV 201 (327)
T ss_pred HHHHHHHHHHHcCCCEEE---------EcchhhhHHHHhcCccccCCCc----ccCCC-------HHHHHHHHHHHHHHH
Confidence 888877777654213332 223357766544 3321 111 01111 123233334566777
Q ss_pred HHHccCCCCceEEEeeecCccccCCCcHHHH
Q 018009 241 RKKYQDKQRGYIGVNIFAFGLLPLTNSTEDA 271 (362)
Q Consensus 241 r~~~p~~~~gkIG~~~~~~~~yP~s~~p~D~ 271 (362)
|+... .+..||+-++.....+...++++.
T Consensus 202 r~~~g--~d~~i~vris~~~~~~~g~~~~e~ 230 (327)
T cd02803 202 REAVG--PDFPVGVRLSADDFVPGGLTLEEA 230 (327)
T ss_pred HHHcC--CCceEEEEechhccCCCCCCHHHH
Confidence 77643 134688888765544433345553
No 128
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=49.24 E-value=58 Score=33.43 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCeeeecc-cccc-cccC-CCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 018009 83 KEDVKLMADTGLDAYRFSI-SWSR-LIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~r-i~P~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (362)
+|.+++|+++|++.+-+++ +-+. +... ++| .+ .+.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 6778999999999888888 3432 2222 122 33 56788999999999999887765 3444
No 129
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=49.02 E-value=35 Score=37.43 Aligned_cols=87 Identities=13% Similarity=0.180 Sum_probs=54.3
Q ss_pred HHHHHHHcCCCeeeeccccc---------------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecC--CCC--
Q 018009 85 DVKLMADTGLDAYRFSISWS---------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH--FDL-- 145 (362)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~---------------ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H--~~~-- 145 (362)
-++.+|+||++++-+.=-.. .+.|. -|. .+-++++|++|.++||.+|+++-+ ..-
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~-~Gt-----p~dlk~LVd~aH~~GI~VilDvV~nH~~~~~ 329 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSR-SGT-----PEDLKYLIDKAHSLGLRVLMDVVHSHASKNT 329 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEeccccccccc
Confidence 48999999999998763221 11111 122 345889999999999999999653 221
Q ss_pred -----------cHhHHhhhCC----C-------CCchhHHHHHHHHHHHHHHhC
Q 018009 146 -----------PQALEDEYGG----W-------INRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 146 -----------P~~l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~~ 177 (362)
+.|+.....| | .++++.+.+.+=++.-++.|+
T Consensus 330 ~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 330 LDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222110011 2 245677777777777777775
No 130
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=48.42 E-value=43 Score=33.10 Aligned_cols=110 Identities=18% Similarity=0.466 Sum_probs=58.0
Q ss_pred ccCcHHHHHHHHHcCCCeeee--------------------------c----ccccccccC-C-CCCCC----hhhhHHH
Q 018009 79 YHKYKEDVKLMADTGLDAYRF--------------------------S----ISWSRLIPN-G-RGPVN----PKGLQYY 122 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~--------------------------s----i~W~ri~P~-g-~g~~n----~~~~~~y 122 (362)
|+||++.|+.|+=-|+|..=- + +.|.|.--- | .|++. .+-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 567888888888777775421 1 245554321 1 13332 2234556
Q ss_pred HHHHHHHHHcCCeeEEeecCCCCcHhHHhhh--------CCC--------CCchhHHHHHHHHHHH----HHHhCCCceE
Q 018009 123 NNLINELISYGIQPHVTLHHFDLPQALEDEY--------GGW--------INRTIVKDFTAYADVC----FRQFGDRVSY 182 (362)
Q Consensus 123 ~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~--------gg~--------~~~~~~~~f~~ya~~~----~~~~~d~v~~ 182 (362)
+++++++++.||+|++=-+---.|.-+.+++ +.| +++ .-+.|.+.++.. .+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 7999999999999998877666888887765 223 222 235677766655 46677 4455
Q ss_pred EE--EecCCC
Q 018009 183 WT--TVNEPN 190 (362)
Q Consensus 183 w~--t~NEp~ 190 (362)
+. +|||-.
T Consensus 176 Y~~D~FnE~~ 185 (333)
T PF05089_consen 176 YAADPFNEGG 185 (333)
T ss_dssp EE--TTTTS-
T ss_pred eCCCccCCCC
Confidence 53 788843
No 131
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=48.19 E-value=60 Score=32.04 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=37.4
Q ss_pred HHHHHHcCCCeeeecccccc---cccCCCCCCCh----hhhHHHHHHHHHHHHcCCeeEEeecCCC
Q 018009 86 VKLMADTGLDAYRFSISWSR---LIPNGRGPVNP----KGLQYYNNLINELISYGIQPHVTLHHFD 144 (362)
Q Consensus 86 i~l~~~lG~~~~R~si~W~r---i~P~g~g~~n~----~~~~~y~~~i~~l~~~Gi~p~vtL~H~~ 144 (362)
++++|++|++-+=+.-.-.. +-|..-..+|- -.-+...+++++|+++||++-+-++++|
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 79999999998876543222 22221122322 2357899999999999999999888765
No 132
>PRK09936 hypothetical protein; Provisional
Probab=47.85 E-value=1.4e+02 Score=29.05 Aligned_cols=62 Identities=18% Similarity=0.372 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCC-hhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHh
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVN-PKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n-~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~ 151 (362)
.|++=++.++.+|+++. =+.|++. |+..+- +++ +..+.++...+.||+++|.|+ +| |.|.+.
T Consensus 39 qWq~~~~~~~~~G~~tL--ivQWt~y---G~~~fg~~~g--~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTL--VVQWTRY---GDADFGGQRG--WLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHHcCCcEE--EEEeeec---cCCCcccchH--HHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 45666788999999985 4589998 221221 133 688999999999999999997 56 666654
No 133
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=47.27 E-value=62 Score=33.14 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=66.6
Q ss_pred cHHHHHHHHHcCCCeeeecc-cccc-cccCCCCCCChhhhHHHHHHHHHHHHcC-CeeEEeecCCCCcHhHHhhhCCCCC
Q 018009 82 YKEDVKLMADTGLDAYRFSI-SWSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~G-i~p~vtL~H~~~P~~l~~~~gg~~~ 158 (362)
-+|.+++|+++|+|.+-+++ +-+. +... -|+.. ..+-..+.|+.+++.| +.+.++|. +++|..
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~-lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPgq---------- 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRR-AGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPGQ---------- 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCCC----------
Confidence 36889999999999887777 3332 2222 23322 1455678899999999 66777775 566631
Q ss_pred chhHHHHHHHHHHHHHHhCCCceEEEEecCCCcccccccccCCCC
Q 018009 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAP 203 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~ 203 (362)
+.+.|.+=.+.+.+.=-+.|..+...-||...-...+..|.++
T Consensus 228 --T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 228 --TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 2445555555655544477888888888876433323334443
No 134
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=47.11 E-value=42 Score=37.22 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=41.9
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccC--C-----CCCCChh--hhHHHHHHHHHHHHcCCeeEEeec
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPN--G-----RGPVNPK--GLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~--g-----~g~~n~~--~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
+....+-++-+++||++++=+|=-+.-.-.. | ...+|++ +.+-+++++++++++||.+|+++-
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3446778899999999999766433211000 0 0122222 356689999999999999999853
No 135
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=46.91 E-value=58 Score=30.37 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=43.0
Q ss_pred cccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhC
Q 018009 100 SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 100 si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 177 (362)
.+.|..+.++|.-.... .......+++.++++|+++++.+..+....... -..+++..+.|++=+-..+++++
T Consensus 27 ~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 34566665554212211 123567889999999999999997655432111 12456666677665555556554
No 136
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=46.22 E-value=1.1e+02 Score=30.20 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=57.1
Q ss_pred cHHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eEEeecCCCCcHhHHhhhCCCCC
Q 018009 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~~l~~~~gg~~~ 158 (362)
-++.+++|+++|++.+-+++ +-+ ++... -|+.. ..+...+.++.+++.|+. +.++|. +++|..
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~~--s~~~~~~a~~~l~~~g~~~v~~dli-~GlPgq---------- 172 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAV-LDRTH--TPGRAVAAAREARAAGFEHVNLDLI-YGTPGE---------- 172 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCCC----------
Confidence 46889999999999666665 232 22222 12211 255677899999999998 656664 455521
Q ss_pred chhHHHHHHHHHHHHHHhCCCceEEEEecCCCcc
Q 018009 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 192 (362)
+.+.|.+=.+.+.+.=-+.|..+...=||+..
T Consensus 173 --t~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~ 204 (375)
T PRK05628 173 --SDDDWRASLDAALEAGVDHVSAYALIVEDGTA 204 (375)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEeeeeecCCCCh
Confidence 34455555555554333566665544566653
No 137
>PRK12568 glycogen branching enzyme; Provisional
Probab=45.37 E-value=45 Score=36.53 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=55.7
Q ss_pred ccCcHHH-HHHHHHcCCCeeeec--------ccccccccCCCCCCCh--hhhHHHHHHHHHHHHcCCeeEEeec--CCCC
Q 018009 79 YHKYKED-VKLMADTGLDAYRFS--------ISWSRLIPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH--HFDL 145 (362)
Q Consensus 79 ~~~~~eD-i~l~~~lG~~~~R~s--------i~W~ri~P~g~g~~n~--~~~~~y~~~i~~l~~~Gi~p~vtL~--H~~~ 145 (362)
|....+. |+-+|+||++++=+. -+|- -.|.+-=.++. -..+-++++|++|+++||++|+++. |+.-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3334444 688999999998654 2342 11111000111 1245688999999999999999854 4431
Q ss_pred c-----------HhHH-h-h---hCCC-------CCchhHHHHHHHHHHHHHHhC
Q 018009 146 P-----------QALE-D-E---YGGW-------INRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 146 P-----------~~l~-~-~---~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (362)
- .+-. + . +..| .++++.+.+.+=++.-++.|+
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 1 0100 0 0 1123 345667777777777777765
No 138
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=45.26 E-value=83 Score=34.75 Aligned_cols=99 Identities=22% Similarity=0.352 Sum_probs=63.7
Q ss_pred cCCCeeeeccc-ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCC---CCcHhHHhh---------------
Q 018009 92 TGLDAYRFSIS-WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE--------------- 152 (362)
Q Consensus 92 lG~~~~R~si~-W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~~l~~~--------------- 152 (362)
+=++++++++. |.+ .-+.=.+|+.-+---+.+|+.+++.||+.++.+... |.|..-+..
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 45788999995 876 121223455555556699999999999999988642 333321111
Q ss_pred ---------hCCCCCchhHHHHHHHHHHHHHHhCC--CceEEEEecCCCccccc
Q 018009 153 ---------YGGWINRTIVKDFTAYADVCFRQFGD--RVSYWTTVNEPNAFANL 195 (362)
Q Consensus 153 ---------~gg~~~~~~~~~f~~ya~~~~~~~~d--~v~~w~t~NEp~~~~~~ 195 (362)
+-.++|++.++.|.+ ...+.+.| -.-+|.=+|||.+....
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~---~~~~~l~d~Gv~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWAS---DKKKNLLDLGVDGFWNDMNEPEPFDGD 422 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHH---HHHhHHHhcCccEEEccCCCCcccccc
Confidence 012678888888887 33333333 36788999999986443
No 139
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=45.06 E-value=3e+02 Score=26.77 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=33.8
Q ss_pred cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCC
Q 018009 104 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (362)
Q Consensus 104 ~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~ 144 (362)
++..|...+-++.+-+..++++.+.++++|-..++=|+|-+
T Consensus 61 ~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G 101 (336)
T cd02932 61 GRITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAG 101 (336)
T ss_pred cCCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCCC
Confidence 34445545667888999999999999999999999999953
No 140
>PRK12677 xylose isomerase; Provisional
Probab=44.69 E-value=2e+02 Score=28.91 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeecCCCCcHhHHhhhCCCCCc
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~gg~~~~ 159 (362)
..+|-++.++++|++.+=+.. ..+.|-+ ....+--...+++-+.+.++||++. ++...|..|.+ +.|++.++
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 468889999999999886532 2244431 1111111257788888999999966 55555555644 23788775
Q ss_pred h--hHHHHHHHHHHH---HHHhCC
Q 018009 160 T--IVKDFTAYADVC---FRQFGD 178 (362)
Q Consensus 160 ~--~~~~f~~ya~~~---~~~~~d 178 (362)
+ ..+.-.++.+.+ +..+|-
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3 233324555443 445553
No 141
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=44.67 E-value=65 Score=31.78 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=55.5
Q ss_pred cHHHHHHHHHcCCCeeeeccc-cc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeecCCCCcHhHHhhhCCCCC
Q 018009 82 YKEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~gg~~~ 158 (362)
-++.++.|+++|++.+-++++ -+ ++... -|+.. ..+-+.+.|+.+++.|+.++ ++|. +++|..
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlPgq---------- 164 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQH--SAKNIAPAIETALKSGIENISLDLM-YGLPLQ---------- 164 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEecc-CCCCCC----------
Confidence 368899999999996666662 32 23322 23321 25678899999999999754 4443 556531
Q ss_pred chhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
+.+.+.+-.+.+.+.=-+.+..+...=||.
T Consensus 165 --t~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 165 --TLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred --CHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 244555555555543334555554444454
No 142
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=44.17 E-value=1.3e+02 Score=29.52 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeecCCCCcHhHHhhhCCCCCc
Q 018009 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~gg~~~~ 159 (362)
++.++.++++|+|.+-+++ +-+ .+... -|+.. ..+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~-lgR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKF-LGRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC------------
Confidence 6899999999999776666 343 23322 23322 25567889999999999855 6665 56663
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 160 ~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
++.+.|.+-.+.+.+.=-++|..+...=||.
T Consensus 162 qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 2355666666665543334555554444554
No 143
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=43.90 E-value=91 Score=30.68 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 018009 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (362)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (362)
+.+.+|++|.+++.|=+=|. |+++..+|..-.++.+++.++|++.||--++=+-.+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 47889999999999988765 454556888889999999999999999999988776644
No 144
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=43.37 E-value=91 Score=32.62 Aligned_cols=97 Identities=11% Similarity=0.161 Sum_probs=57.1
Q ss_pred ccCcH-----HHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee----cCCCCcHhH
Q 018009 79 YHKYK-----EDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL----HHFDLPQAL 149 (362)
Q Consensus 79 ~~~~~-----eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL----~H~~~P~~l 149 (362)
|.+|. .|++..++.|++.+|+....+.+ +-.+..|+.+++.|.....++ .+-..|..+
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv-------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~ 157 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP-------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGF 157 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH-------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHH
Confidence 55555 47899999999999999876655 224455556666666553333 222222222
Q ss_pred Hhh----------------hCCCCCchhHHHHHHHHHHHHHHhC-CCceEEEEecCCCc
Q 018009 150 EDE----------------YGGWINRTIVKDFTAYADVCFRQFG-DRVSYWTTVNEPNA 191 (362)
Q Consensus 150 ~~~----------------~gg~~~~~~~~~f~~ya~~~~~~~~-d~v~~w~t~NEp~~ 191 (362)
.+. -.|-.. +....+.++.+-++++ +..-...+.|-..+
T Consensus 158 ~~~a~~l~~~Gad~I~IkDtaGll~---P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl 213 (499)
T PRK12330 158 VEQAKRLLDMGADSICIKDMAALLK---PQPAYDIVKGIKEACGEDTRINLHCHSTTGV 213 (499)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCC---HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCc
Confidence 110 034444 4466677777778886 33344568887765
No 145
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=43.24 E-value=92 Score=33.29 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=57.8
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHh----HHh------
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA----LED------ 151 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~----l~~------ 151 (362)
.++|+++.++.|++.+|+..+-+.+ +-..+.++..+++|.....++..-..|.+ +.+
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4567889999999999998766554 22456667777888877777654333411 111
Q ss_pred hh----------CCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 152 EY----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 152 ~~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
+. .|-.. +....+.++.+-++++ ..-...+.|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~---P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLT---PYAAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcC---HHHHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 00 23444 4456667777777774 3334567777765
No 146
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=43.20 E-value=54 Score=35.00 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHcCCeeEEeec
Q 018009 119 LQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
.+-++++|++|+++||++|+++.
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 46699999999999999999854
No 147
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=42.27 E-value=63 Score=35.15 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=36.5
Q ss_pred HHHHHHcCCCeeeecc--cccc--------------cccCCCCCCChh-----hhHHHHHHHHHHHHcCCeeEEeec
Q 018009 86 VKLMADTGLDAYRFSI--SWSR--------------LIPNGRGPVNPK-----GLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 86 i~l~~~lG~~~~R~si--~W~r--------------i~P~g~g~~n~~-----~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
|+-+|+||++++=+.= +..- -.|..--.++.. .++-++++|++|+++||++|+++-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7899999999997652 1110 001100011111 256799999999999999999954
No 148
>PLN02389 biotin synthase
Probab=42.23 E-value=77 Score=31.85 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=43.5
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccc-cccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
..-+|.++.||++|++.|-.+++=++ +.|.-...- .++..-+.++.+++.||++..++.
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 36789999999999999999886222 444411111 377788999999999999876653
No 149
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=42.23 E-value=46 Score=34.05 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=38.4
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC---CCC-CChhhhHHHHHHHHHHHHcCCe-eEEeecCCCCc
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLP 146 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g---~g~-~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P 146 (362)
-++.+++|+++|++.+-+++ .-.-++- -+. .+ .+.+.+.++.++++|++ +-++|. +++|
T Consensus 150 ~~e~l~~lk~~G~~risiGv--qS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGV--QDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 37889999999999666555 3332220 122 23 56678999999999996 444443 4455
No 150
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=41.83 E-value=1.9e+02 Score=28.25 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCeeEEeecCC-----CCcHhHHhh-------------h--------C---CCCCchhHHHHHHHHHHH
Q 018009 122 YNNLINELISYGIQPHVTLHHF-----DLPQALEDE-------------Y--------G---GWINRTIVKDFTAYADVC 172 (362)
Q Consensus 122 y~~~i~~l~~~Gi~p~vtL~H~-----~~P~~l~~~-------------~--------g---g~~~~~~~~~f~~ya~~~ 172 (362)
-+++|+.|+++|++.++.++-+ +.|..-+.. + + .|+|++..+.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 5689999999999987655422 123222110 0 1 367888888877666655
Q ss_pred HHHhCCCceEEEEecCCCcc
Q 018009 173 FRQFGDRVSYWTTVNEPNAF 192 (362)
Q Consensus 173 ~~~~~d~v~~w~t~NEp~~~ 192 (362)
. ..| ---+|+=+|||..+
T Consensus 146 ~-~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 146 V-DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred h-hCC-CceEeecCCCcccc
Confidence 4 222 24566899999865
No 151
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=41.74 E-value=89 Score=30.17 Aligned_cols=63 Identities=19% Similarity=0.253 Sum_probs=45.8
Q ss_pred CcHHHHHHHHHcCCCeeeecc----cccccccC-C--CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHH
Q 018009 81 KYKEDVKLMADTGLDAYRFSI----SWSRLIPN-G--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALE 150 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si----~W~ri~P~-g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~ 150 (362)
..++=|+.|+.+|+|.+-+=+ .+.. .|. + +|.+.++. ++++++.++++||+++.-+. +|..+.
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPeid---~pGH~~ 87 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLIQ---TLGHLE 87 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecCC---CHHHHH
Confidence 367789999999999988733 3432 233 1 46777554 77999999999999999775 565543
No 152
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=41.69 E-value=70 Score=30.70 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=48.3
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEee
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
.--++|++...++|++.+-+.++=|...-.. -+.=-++.++.+.++++.++++|+++-+++
T Consensus 74 r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 74 RANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred cCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3357999999999999999888766544321 233345789999999999999999999888
No 153
>PTZ00445 p36-lilke protein; Provisional
Probab=41.59 E-value=54 Score=30.42 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=41.5
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChh---------hhHHHHHHHHHHHHcCCeeEEeec
Q 018009 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPK---------GLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~---------~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
++++++.|++++=+.++=.-|.--..|-.++. +-.....++.+|+++||...|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 67899999999998887776642212333332 345578899999999999998876
No 154
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=40.60 E-value=93 Score=37.39 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=41.9
Q ss_pred ccCcHHHHHHHHHcCCCeeeeccccc---------------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWS---------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~---------------ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
++...+-++.+++||++++=+|=-+. +|.|. -| +.+-+++++++++++||.+|+++-
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~-lG-----~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPE-IG-----GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 34466678899999999997664433 33333 12 355689999999999999999863
No 155
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=40.32 E-value=2.2e+02 Score=25.00 Aligned_cols=24 Identities=8% Similarity=0.108 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCceEE
Q 018009 160 TIVKDFTAYADVCFRQFGDRVSYW 183 (362)
Q Consensus 160 ~~~~~f~~ya~~~~~~~~d~v~~w 183 (362)
+..+....|++.+-++.|-++-.+
T Consensus 100 ~~~~~~~~f~~~v~~~~G~~~~iY 123 (184)
T cd06525 100 ELNDYVLRFIEEFEKLSGLKVGIY 123 (184)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEE
Confidence 345666667777766656554433
No 156
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=40.15 E-value=84 Score=26.68 Aligned_cols=58 Identities=10% Similarity=0.183 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCC
Q 018009 118 GLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDR 179 (362)
Q Consensus 118 ~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~ 179 (362)
..+=+.-+++.|++.|++|++.+.=. -+.|. .|-| .+++..+.|.+=++..+++.|=+
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~Pv-Ng~wy--dytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQPV-NGKWY--DYTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE-----HHHH--HHTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred cHHHHHHHHHHHHHcCCceEEEecCC-cHHHH--HHhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 35557889999999999999998410 12443 2555 45667788888888888888753
No 157
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=40.03 E-value=3.6e+02 Score=26.25 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=34.0
Q ss_pred ccccc---CCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCC
Q 018009 104 SRLIP---NGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF 143 (362)
Q Consensus 104 ~ri~P---~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~ 143 (362)
.+..| ...+-++.+-+..++++.+.++++|-+.++=|.|-
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~ 105 (338)
T cd04733 63 HLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNHP 105 (338)
T ss_pred cccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccCC
Confidence 45666 33567888899999999999999999999999993
No 158
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=39.14 E-value=1e+02 Score=29.64 Aligned_cols=84 Identities=10% Similarity=0.110 Sum_probs=53.5
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCC----cHhHHhhhCCCCCchh
Q 018009 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL----PQALEDEYGGWINRTI 161 (362)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~----P~~l~~~~gg~~~~~~ 161 (362)
.+.+++-+-+-=.++..|-.|.|+| .+... ...++++.++++|+++++++..++- +.-+.. --.+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHHH
Confidence 5667776666667788999998774 33322 2458999999999999999986541 111110 1134555
Q ss_pred HHHHHHHHHHHHHHhC
Q 018009 162 VKDFTAYADVCFRQFG 177 (362)
Q Consensus 162 ~~~f~~ya~~~~~~~~ 177 (362)
.+.|++=+-.++++++
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 5666665555566654
No 159
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=38.60 E-value=2.2e+02 Score=24.31 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=40.3
Q ss_pred ccCcHHHHHHHHHcCCCeeeeccc-ccc-cccCCCCCCChhhhHHHHHHHHHHHHcC-CeeEEee
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSIS-WSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTL 140 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~-W~r-i~P~g~g~~n~~~~~~y~~~i~~l~~~G-i~p~vtL 140 (362)
...-++.++.|++.|++.+.+|++ ++. +...-....+ ++.+.+.|+.++++| +.+-+.+
T Consensus 96 ~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 96 GTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred ccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 334578899999999999999986 543 2211011122 578889999999999 5554433
No 160
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=38.58 E-value=58 Score=33.38 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=38.5
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC---CCC-CChhhhHHHHHHHHHHHHcCCe-eEEeecCCCCc
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLP 146 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g---~g~-~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P 146 (362)
-+|.+++|+++|++.+-+++ .-.-|+- -|. .+ .+...+.|+.+++.|+. .-++|. +++|
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRIQP---EEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 47899999999999555555 3333221 122 23 55678899999999997 445553 4455
No 161
>PRK01060 endonuclease IV; Provisional
Probab=38.46 E-value=1.5e+02 Score=27.77 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=37.3
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 137 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~ 137 (362)
.-+++-++.++++|++.+=+.+.-++.... +.++.+. .+++-+.+.++||++.
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISPE 64 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCCC
Confidence 347889999999999999998765554322 3445433 4455666779999853
No 162
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=38.35 E-value=94 Score=30.89 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=62.1
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCCe-eEEeecCCCCcHhHHhhhCCCC
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWI 157 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g---~g~~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~~l~~~~gg~~ 157 (362)
-++.++.++++|+|.+-+++ .-+.++- -|+.. ..+-..+.|+.+++.|+. .-++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 36889999999999555554 3333321 12221 244567889999999997 456664 55663
Q ss_pred CchhHHHHHHHHHHHHHHhCCCceEEEEecCCCcc
Q 018009 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (362)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 192 (362)
++.+.|.+=.+.+.+.=-++|..+...=||...
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 246677777777776545788888888888753
No 163
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=37.98 E-value=1.9e+02 Score=28.56 Aligned_cols=92 Identities=14% Similarity=0.250 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCC-CChhhhHHHHHHHHHHHHcCCe-eEEeecCCCCcHhHHhhhCCCCC
Q 018009 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~g~g~-~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~~l~~~~gg~~~ 158 (362)
+|.+++|+++|++.+-+++ +=+ ++... -|+ .+ .+-+.+.++.++++|+. +-+++. +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~-l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQ-LNRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC-----------
Confidence 6899999999999655555 222 22222 122 33 45677999999999997 445554 45552
Q ss_pred chhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
++.+.|.+=.+.+.+.=-+.|..+...=||..
T Consensus 167 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 -LKLKDLDEVFNFILKHKINHISFYSLEIKEGS 198 (353)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCC
Confidence 23556666666554433355655544445653
No 164
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=37.91 E-value=1.7e+02 Score=29.05 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=56.2
Q ss_pred cHHHHHHHHHcCCCeeeeccc-c-cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeecCCCCcHhHHhhhCCCCC
Q 018009 82 YKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~-W-~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~gg~~~ 158 (362)
-++.+++|+++|++.+-++++ = .++...=....+ .+-..+.|+.+++.|+..+ +.+. +++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------q- 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG---------Q- 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC---------C-
Confidence 478899999999997777762 2 233322111233 5667899999999999743 4443 55663 2
Q ss_pred chhHHHHHHHHHHHHHHhCCCceEEEEecCCCcc
Q 018009 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 192 (362)
+.+.|.+=.+.+.+.=.+.|..+...-+|...
T Consensus 165 --t~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 165 --TIEDFKESLAKALALDIPHYSAYSLILEPKTV 196 (377)
T ss_pred --CHHHHHHHHHHHHccCCCEEeeeceeecCCCh
Confidence 23455555555544323455555444566643
No 165
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=37.72 E-value=1.8e+02 Score=29.24 Aligned_cols=84 Identities=19% Similarity=0.399 Sum_probs=56.9
Q ss_pred HHHHHHHHHc-CCCeeeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeecCCCCcHhHHhhhCCCCC
Q 018009 83 KEDVKLMADT-GLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 83 ~eDi~l~~~l-G~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~gg~~~ 158 (362)
-+|++.+.++ |+. .++++ .|+.. ..+.++.+.++++||+.. ++...|..|.+ ++|.+.|
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH~~~d~~-------------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~ 105 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALHIPWDRV-------------EDYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTH 105 (378)
T ss_pred HHHHHHHHhhcCCC-CceeeccCCccc-------------cCHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCC
Confidence 5677777777 555 66665 44111 237788888999999988 77776766654 3577876
Q ss_pred c--hhHHHHHHHHHHHH---HHhCCC-ceEE
Q 018009 159 R--TIVKDFTAYADVCF---RQFGDR-VSYW 183 (362)
Q Consensus 159 ~--~~~~~f~~ya~~~~---~~~~d~-v~~w 183 (362)
+ ++.+...++.+.+. +.+|.. |..|
T Consensus 106 pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 106 PDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 6 46778888887664 667763 4455
No 166
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=37.62 E-value=1.3e+02 Score=30.45 Aligned_cols=109 Identities=19% Similarity=0.326 Sum_probs=64.7
Q ss_pred CcHHHHHHHHHcCCCe--eeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCC---CCc---HhHHhh
Q 018009 81 KYKEDVKLMADTGLDA--YRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLP---QALEDE 152 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~--~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P---~~l~~~ 152 (362)
...+-++.+++.|+-. +=+...|..-.. .=.+|++.+.-.+++++.|+++|++.++.++-+ +-+ ..-..+
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~ 121 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAK 121 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHh
Confidence 3456677777777654 444445655221 235566666668899999999999988776532 222 111110
Q ss_pred ---h-----CC----------------CCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCcc
Q 018009 153 ---Y-----GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (362)
Q Consensus 153 ---~-----gg----------------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 192 (362)
+ .| |.+++..+.|.+..+.+++.+| ---+|+=+|||..+
T Consensus 122 ~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 122 EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 0 12 6788888888777777666653 34667899999975
No 167
>PRK05660 HemN family oxidoreductase; Provisional
Probab=37.20 E-value=2e+02 Score=28.72 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=60.6
Q ss_pred cHHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeecCCCCcHhHHhhhCCCCC
Q 018009 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~gg~~~ 158 (362)
-++.++.|+++|++.+-+++ +=+ ++... -|... ..+-..+.|+.+++.|+.++ ++|. +++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~-l~r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg----------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKR-LGRIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD----------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 45899999999999666666 222 12222 12221 24556788999999999875 6564 56663
Q ss_pred chhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
++.+.|.+-.+.+.+.=-++|..+...=||..
T Consensus 171 -qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 -QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred -CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23556666666666655577777766666653
No 168
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=36.07 E-value=1.1e+02 Score=28.28 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhC
Q 018009 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 177 (362)
.+...+.|..++++|+++++++.-+.....+ ....+++..+.|++-+..++++|+
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4567789999999999999999754432111 011444455666665555566665
No 169
>PLN02960 alpha-amylase
Probab=35.83 E-value=1e+02 Score=34.58 Aligned_cols=94 Identities=10% Similarity=0.207 Sum_probs=58.4
Q ss_pred cccCcHHH-HHHHHHcCCCeeeeccc--------cc-------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee-
Q 018009 78 GYHKYKED-VKLMADTGLDAYRFSIS--------WS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL- 140 (362)
Q Consensus 78 ~~~~~~eD-i~l~~~lG~~~~R~si~--------W~-------ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL- 140 (362)
.|.-..+. ++.+++||++++-+.=- |- .+.|. -|. .+=++.+|++|.++||.+|+++
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~-yGt-----p~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR-FGT-----PDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc-cCC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45555544 89999999999886521 21 11111 122 3458899999999999999997
Q ss_pred -cCCCC--cHhHH--hh-------------hCCC-------CCchhHHHHHHHHHHHHHHhC
Q 018009 141 -HHFDL--PQALE--DE-------------YGGW-------INRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 141 -~H~~~--P~~l~--~~-------------~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (362)
.|+.- +.-|. +. +..| .++++.+.+.+=++.-++.|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35421 10010 00 0112 245677888888888888886
No 170
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=35.51 E-value=96 Score=28.77 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=37.6
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeEEe-ecCCCCc
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVT-LHHFDLP 146 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~--g~~n~~~~~~y~~~i~~l~~~Gi~p~vt-L~H~~~P 146 (362)
.++=|++++++|.+.+++...+ . |.+. ...-....+..+++.+.++++||+..+= +.|++.|
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 5666889999999998864322 2 2210 1111223455677777888999987664 3454444
No 171
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=35.32 E-value=1.5e+02 Score=30.17 Aligned_cols=92 Identities=12% Similarity=0.181 Sum_probs=53.8
Q ss_pred cHHHHHHHHHcCCCeeeecc-ccc-ccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeE-EeecCCCCcHhHHhhhCCCC
Q 018009 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPN-GRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWI 157 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~-ri~P~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~~l~~~~gg~~ 157 (362)
-++.+++|+++|++.+-+++ +=+ ++... +++. + .+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~-~---~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~---------- 204 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQ-K---RADVHQALEWIRAAGFPILNIDLI-YGIPG---------- 204 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCC-C---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 46889999999999666666 231 22222 2322 3 5567899999999999864 5554 55663
Q ss_pred CchhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
++.+.|.+=.+.+.+.=-+.+..+...=||+
T Consensus 205 --qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~ 235 (430)
T PRK08208 205 --QTHASWMESLDQALVYRPEELFLYPLYVRPL 235 (430)
T ss_pred --CCHHHHHHHHHHHHhCCCCEEEEccccccCC
Confidence 2244555555555432224455444333443
No 172
>PTZ00445 p36-lilke protein; Provisional
Probab=35.18 E-value=65 Score=29.87 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhh-hCCCCCch---------hHHHHHHHHHHHHHHhCCCceE-EEEecC
Q 018009 120 QYYNNLINELISYGIQPHVTLHHFDLPQALEDE-YGGWINRT---------IVKDFTAYADVCFRQFGDRVSY-WTTVNE 188 (362)
Q Consensus 120 ~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~-~gg~~~~~---------~~~~f~~ya~~~~~~~~d~v~~-w~t~NE 188 (362)
+.-+.+++.|++.||+.+++= ||. -+... -|||.++. ..+.|..+.+.+-+ . .++. -+||-.
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~Dn--TlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~-~--~I~v~VVTfSd 101 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDL--TMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN-S--NIKISVVTFSD 101 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chh--hhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH-C--CCeEEEEEccc
Confidence 445788899999999999752 232 22221 28899887 45566666555544 1 2332 346655
Q ss_pred CC
Q 018009 189 PN 190 (362)
Q Consensus 189 p~ 190 (362)
..
T Consensus 102 ~~ 103 (219)
T PTZ00445 102 KE 103 (219)
T ss_pred hh
Confidence 44
No 173
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=35.09 E-value=16 Score=34.60 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=42.4
Q ss_pred HHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCcccccccccCCCC
Q 018009 128 ELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAP 203 (362)
Q Consensus 128 ~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~ 203 (362)
-+.++.+.|+++||||+.= ..-+.+....+.++.+.+=++.--.++-.+-..|---....+.+-.||..-.++
T Consensus 76 ~~~a~~~~pl~SlHH~~~~---~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 76 FLEAHPLAPLVSLHHWDSV---DPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eeecCCCCceeeeeehhhc---cccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 3445568999999999852 223455555566777776555444444333223333333344556788877663
No 174
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=34.85 E-value=3.6e+02 Score=27.03 Aligned_cols=97 Identities=19% Similarity=0.151 Sum_probs=54.8
Q ss_pred CCccccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec-CCCCcHhHHhhh
Q 018009 75 ACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-HFDLPQALEDEY 153 (362)
Q Consensus 75 a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H~~~P~~l~~~~ 153 (362)
++...-...+-++.++++|++.+=+ ....+.|-+ ....+-=...+++=+.|.++||++..... -+..|.+ +.
T Consensus 27 ~~~~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~--~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~ 99 (382)
T TIGR02631 27 ATRTALDPVEAVHKLAELGAYGVTF--HDDDLIPFG--APPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVF---KD 99 (382)
T ss_pred CCCCCcCHHHHHHHHHHhCCCEEEe--cccccCCCC--CChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccc---cC
Confidence 3344456788899999999998843 334455542 11111113367788889999999664333 2223433 23
Q ss_pred CCCCCch--hHHHHHHHHHHH---HHHhCC
Q 018009 154 GGWINRT--IVKDFTAYADVC---FRQFGD 178 (362)
Q Consensus 154 gg~~~~~--~~~~f~~ya~~~---~~~~~d 178 (362)
||+.+++ +.+.=.++.+.+ ++.+|-
T Consensus 100 g~las~d~~vR~~ai~~~kraId~A~eLGa 129 (382)
T TIGR02631 100 GGFTSNDRSVRRYALRKVLRNMDLGAELGA 129 (382)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6777753 333333333332 566665
No 175
>PRK14706 glycogen branching enzyme; Provisional
Probab=34.64 E-value=2.9e+02 Score=29.81 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=52.8
Q ss_pred HHHHHcCCCeeeecc--c------ccccccCCCCCCCh--hhhHHHHHHHHHHHHcCCeeEEeec--CCC----------
Q 018009 87 KLMADTGLDAYRFSI--S------WSRLIPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH--HFD---------- 144 (362)
Q Consensus 87 ~l~~~lG~~~~R~si--~------W~ri~P~g~g~~n~--~~~~~y~~~i~~l~~~Gi~p~vtL~--H~~---------- 144 (362)
+-+|+||++++-+.= + |-- .|.+-=.++. -..+=++++|++|+++||++|+++. |+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~d 253 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFD 253 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCc-CcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccC
Confidence 668999999987542 1 210 0000000111 1245588999999999999999854 532
Q ss_pred -CcHh-HHhhhCC----C-------CCchhHHHHHHHHHHHHHHhC
Q 018009 145 -LPQA-LEDEYGG----W-------INRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 145 -~P~~-l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~~ 177 (362)
.|.+ ..+...| | .++++.+.+.+=++.-++.|+
T Consensus 254 g~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 254 GGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111 0000011 2 256788888888888888886
No 176
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=34.60 E-value=1.2e+02 Score=32.98 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHH
Q 018009 122 YNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (362)
Q Consensus 122 y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 174 (362)
...+|+.|+++|+..=+...|-.++.-+..+||. +.+..++.-.+|++.|-+
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999988865 445567777777776643
No 177
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=34.47 E-value=1.7e+02 Score=30.81 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=65.7
Q ss_pred cHHHHHHHHHcCCCeeeeccc--ccccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCC
Q 018009 82 YKEDVKLMADTGLDAYRFSIS--WSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~--W~ri~P~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~ 158 (362)
-++.+++|+++|++.+=++++ -.++.-. ++|. + .+-..+.++.++++|+++.+.|. +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRgh-t---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg----------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRGH-T---VRDVVEATRLLRDAGLKVVYHIM-PGLPG----------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCC-C---HHHHHHHHHHHHHcCCeEEEEee-cCCCC-----------
Confidence 368899999999997777772 3333322 2332 2 55567889999999998777664 55652
Q ss_pred chhHHHHHHHHHHHHH--HhC-CCceEEEEecCCCcccccccccCCCCC
Q 018009 159 RTIVKDFTAYADVCFR--QFG-DRVSYWTTVNEPNAFANLGYDYGIAPP 204 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~--~~~-d~v~~w~t~NEp~~~~~~gy~~g~~~P 204 (362)
++.+.+.+=++.+++ .++ |.|+.+-+.=+|......-|..|.|.|
T Consensus 269 -qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 -SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred -CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 124455555566664 343 567777655566544333355555544
No 178
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=34.41 E-value=1.5e+02 Score=27.94 Aligned_cols=90 Identities=14% Similarity=0.238 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCC--eeeecccccccccCCCC--CCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCC
Q 018009 83 KEDVKLMADTGLD--AYRFSISWSRLIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 83 ~eDi~l~~~lG~~--~~R~si~W~ri~P~g~g--~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~ 158 (362)
.+-++.+++.|+. ++=+.+.|..-. +.- .+|.+.+.-.+++|+.|++.|++.++.++ |.-
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~v---------- 90 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PYI---------- 90 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hhH----------
Confidence 4555666665544 555666665432 233 55666666678999999999999998774 321
Q ss_pred chhHHHHHHHHHHHHHHhCCCceEEEEecCCCcc
Q 018009 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 192 (362)
.+.|.+..+.+....| ---+|+=+|||...
T Consensus 91 ---~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 120 (265)
T cd06589 91 ---REWWAEVVKKLLVSLG-VDGFWTDMGEPSPG 120 (265)
T ss_pred ---HHHHHHHHHHhhccCC-CCEEeccCCCCCcC
Confidence 4455544443322222 24567899999854
No 179
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=34.41 E-value=1.5e+02 Score=29.07 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=44.6
Q ss_pred cHHHHHHHHHcCCCeeeecc----cc-------cccccCC---------CCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 82 YKEDVKLMADTGLDAYRFSI----SW-------SRLIPNG---------RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si----~W-------~ri~P~g---------~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
.++-|+.|+..++|.+-+-+ +| +++-..| .|.+.+ +=++++++.++++||++|.-+
T Consensus 20 lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi- 95 (329)
T cd06568 20 VKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI- 95 (329)
T ss_pred HHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec-
Confidence 56778999999999987766 24 3332211 134553 347899999999999999876
Q ss_pred CCCCcHhHH
Q 018009 142 HFDLPQALE 150 (362)
Q Consensus 142 H~~~P~~l~ 150 (362)
|+|....
T Consensus 96 --D~PGH~~ 102 (329)
T cd06568 96 --DMPGHTN 102 (329)
T ss_pred --CCcHHHH
Confidence 5777654
No 180
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=34.34 E-value=1.4e+02 Score=27.31 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=54.7
Q ss_pred HHHHHH----HHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCC
Q 018009 83 KEDVKL----MADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI 157 (362)
Q Consensus 83 ~eDi~l----~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~ 157 (362)
++|++. +++.|++.+|+.++=+...... -+.--++.++...++++.+++.|++..+++-+.. ..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~-----------~~ 134 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS-----------RT 134 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------GS
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------cc
Confidence 455555 4569999999998665533221 2333346788999999999999999987775421 12
Q ss_pred CchhHHHHHHHHHHHHHH
Q 018009 158 NRTIVKDFTAYADVCFRQ 175 (362)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~ 175 (362)
..+.+.++++.+.+.
T Consensus 135 ---~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 135 ---DPEELLELAEALAEA 149 (237)
T ss_dssp ---SHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHHc
Confidence 256777778877666
No 181
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=34.03 E-value=63 Score=30.36 Aligned_cols=60 Identities=7% Similarity=0.053 Sum_probs=39.2
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEee
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
-++++.-+++++++|.+.+|+.-. +..+.. ....-...++.++++++.++++||.+.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 345677789999999999998521 111110 111112356677888899999999887743
No 182
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=33.71 E-value=1.7e+02 Score=28.21 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCcccccccc
Q 018009 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYD 198 (362)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~ 198 (362)
++-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 55678999999999999877665 45552 234666676776665545678888887788765544455
Q ss_pred cCCCC
Q 018009 199 YGIAP 203 (362)
Q Consensus 199 ~g~~~ 203 (362)
.|.+.
T Consensus 229 ~g~~~ 233 (302)
T TIGR01212 229 KGELK 233 (302)
T ss_pred cCCCC
Confidence 55554
No 183
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=32.95 E-value=92 Score=31.86 Aligned_cols=61 Identities=11% Similarity=0.309 Sum_probs=39.3
Q ss_pred cHHHHHHHHHcCCCeeeeccc-cc-ccccCCCCCCChhhhHHHHHHHHHHHHcCC-eeEEeecCCCCc
Q 018009 82 YKEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNNLINELISYGI-QPHVTLHHFDLP 146 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~-W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi-~p~vtL~H~~~P 146 (362)
-+|.+++|+++|++.+.++++ =+ ++... -|.. ...+-..+.++.+++.|+ .+.++|. +++|
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~-l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKA-VNRI--QPFEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHH-hCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 478999999999997777662 22 12111 1221 125567789999999999 4555554 4555
No 184
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.80 E-value=56 Score=30.46 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=39.1
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEe
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 139 (362)
...++.-|++.+.+|.+.+++........+. ....-+..++.++++.+.+.++||+..+=
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTP-PNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 4456667899999999999986432211111 11111345667888889999999976653
No 185
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=32.51 E-value=63 Score=35.17 Aligned_cols=64 Identities=22% Similarity=0.464 Sum_probs=43.9
Q ss_pred ccCcHHH-HHHHHHcCCCeeeec-c-cc-ccc-----------ccCCC-CCCC-hhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 79 YHKYKED-VKLMADTGLDAYRFS-I-SW-SRL-----------IPNGR-GPVN-PKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 79 ~~~~~eD-i~l~~~lG~~~~R~s-i-~W-~ri-----------~P~g~-g~~n-~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
|..+.|+ +..+|+||.|++.+= | +- +.. -|..+ |..+ +.-+.-+++||+++.+.||+++++.-
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 8888887 999999999998742 1 22 111 12211 2211 22266789999999999999999876
Q ss_pred C
Q 018009 142 H 142 (362)
Q Consensus 142 H 142 (362)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 5
No 186
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=31.91 E-value=2.5e+02 Score=29.02 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=49.2
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCC
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~ 158 (362)
.|.++-.++++++|+|..-+.=-= +-....--++..-+....++-|-.|.+||+..+++. |..|..| ||...
T Consensus 183 qR~kDYAR~laSiGINg~v~NNVN--vk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin-faSP~~l----GgL~T 254 (684)
T COG3661 183 QRMKDYARALASIGINGTVLNNVN--VKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN-FASPMEL----GGLKT 254 (684)
T ss_pred HHHHHHHHHHhhcCcceEEecccc--cchhhhheechHhHHHHHHHHHHhhhccceEEEEec-cCCcccc----CCcCc
Confidence 566777889999999988764210 000001124444566777888999999999999996 7888755 67543
No 187
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=31.22 E-value=1.6e+02 Score=29.57 Aligned_cols=94 Identities=17% Similarity=0.333 Sum_probs=55.8
Q ss_pred HcCCCeeeecccccccccCCCCCCChhhhHHHHHHH--HHHHHcCCeeEEeecCCCCcHhHHhhh---CC---CCCchhH
Q 018009 91 DTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLI--NELISYGIQPHVTLHHFDLPQALEDEY---GG---WINRTIV 162 (362)
Q Consensus 91 ~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i--~~l~~~Gi~p~vtL~H~~~P~~l~~~~---gg---~~~~~~~ 162 (362)
++|+...|+-|.=.+.--. |..|. +|+++= ...+..|++++-+- |.-|.|+-... || -+.++--
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~Y 148 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--GSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEKY 148 (433)
T ss_pred ccCceEEEEEecccccccC--CCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhHh
Confidence 5889999988865554322 55552 333332 23556788877665 88999986432 33 4444444
Q ss_pred HHHHHHHHHHHHHhCC---CceEEEEecCCCcc
Q 018009 163 KDFTAYADVCFRQFGD---RVSYWTTVNEPNAF 192 (362)
Q Consensus 163 ~~f~~ya~~~~~~~~d---~v~~w~t~NEp~~~ 192 (362)
..|++|-...+..+++ .+.+--+=|||...
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 4444444444455544 45666799999865
No 188
>PRK07094 biotin synthase; Provisional
Probab=30.39 E-value=1e+02 Score=29.73 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHcCCCeeeeccc-c-cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee
Q 018009 81 KYKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
.-+|+++.|+++|++.+-++++ - .++...=....+ ++.+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecceE
Confidence 4589999999999999988884 3 234333111223 5678899999999999865544
No 189
>PRK09389 (R)-citramalate synthase; Provisional
Probab=30.36 E-value=1.7e+02 Score=30.48 Aligned_cols=106 Identities=9% Similarity=-0.051 Sum_probs=70.7
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCC--CcHhHHhh------
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD--LPQALEDE------ 152 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~--~P~~l~~~------ 152 (362)
-++|++.+.+.|++.+++.++-|.+.-.. -+.--++.++...+.++.+++.|++..+++-... -|..+.+-
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHh
Confidence 48999999999999999999877664221 1333356788899999999999999888876532 23333211
Q ss_pred h----------CCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 153 Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 153 ~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
. -|.. .+..+.++++.+.++++ -.--+...|-..+
T Consensus 155 ~Ga~~i~l~DTvG~~---~P~~~~~lv~~l~~~~~-v~l~~H~HND~Gl 199 (488)
T PRK09389 155 AGADRICFCDTVGIL---TPEKTYELFKRLSELVK-GPVSIHCHNDFGL 199 (488)
T ss_pred CCCCEEEEecCCCCc---CHHHHHHHHHHHHhhcC-CeEEEEecCCccH
Confidence 1 2223 35566667777766664 2234567887775
No 190
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.86 E-value=5.2e+02 Score=25.04 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=42.6
Q ss_pred cHHHHHHHHHcCCCeeeecc--cccc---cccC-----------------------CCCCCChhhhHHHHHHHHHHHHcC
Q 018009 82 YKEDVKLMADTGLDAYRFSI--SWSR---LIPN-----------------------GRGPVNPKGLQYYNNLINELISYG 133 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si--~W~r---i~P~-----------------------g~g~~n~~~~~~y~~~i~~l~~~G 133 (362)
.++=|+.|+..++|.+-+-+ +|.- ..|. +.|.+.+ +-++++++.++++|
T Consensus 19 ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~eiv~yA~~rg 95 (326)
T cd06564 19 LKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKELIAYAKDRG 95 (326)
T ss_pred HHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHHHHHHHHHcC
Confidence 45668899999999887643 2321 1111 1245554 44789999999999
Q ss_pred CeeEEeecCCCCcHhHH
Q 018009 134 IQPHVTLHHFDLPQALE 150 (362)
Q Consensus 134 i~p~vtL~H~~~P~~l~ 150 (362)
|++|.-+ |+|....
T Consensus 96 I~vIPEI---D~PGH~~ 109 (326)
T cd06564 96 VNIIPEI---DSPGHSL 109 (326)
T ss_pred CeEeccC---CCcHHHH
Confidence 9998766 5776643
No 191
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.68 E-value=2.3e+02 Score=26.44 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=37.4
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHc-CCeeEE
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISY-GIQPHV 138 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~-Gi~p~v 138 (362)
..+++-+++++++|++.+=+.+......+. ...+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS--RPLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC--CCCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 678999999999999999888876554433 12233 3456667777777 666554
No 192
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.37 E-value=1.8e+02 Score=27.84 Aligned_cols=106 Identities=17% Similarity=0.281 Sum_probs=55.8
Q ss_pred HHHHHHHHcCC--Ceeeecccccccc--c---CC--CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCC-CC-c---Hh-
Q 018009 84 EDVKLMADTGL--DAYRFSISWSRLI--P---NG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHF-DL-P---QA- 148 (362)
Q Consensus 84 eDi~l~~~lG~--~~~R~si~W~ri~--P---~g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~-~~-P---~~- 148 (362)
+=++.+++.|| +++=+.+.|..-. + ++ .=.+|++.+--.+++|++|++.|++.++.++-. .. | ..
T Consensus 29 ~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~ 108 (292)
T cd06595 29 ALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYP 108 (292)
T ss_pred HHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHH
Confidence 33455555444 4555566675421 0 11 113455555557799999999999988877532 11 1 11
Q ss_pred -HHhhhC-----------CCCCchhHHHHHHHHHHHHHHhC-CCc-eEEEEecCCCcc
Q 018009 149 -LEDEYG-----------GWINRTIVKDFTAYADVCFRQFG-DRV-SYWTTVNEPNAF 192 (362)
Q Consensus 149 -l~~~~g-----------g~~~~~~~~~f~~ya~~~~~~~~-d~v-~~w~t~NEp~~~ 192 (362)
+....+ .+++++..+.| .+.+.+.+- ..| -+|.=+|||...
T Consensus 109 ~~~~~~~~~~~~~~~~~~D~tnp~a~~~w---~~~~~~~~~~~Gidg~W~D~~E~~~~ 163 (292)
T cd06595 109 EMAKALGVDPATEGPILFDLTNPKFMDAY---FDNVHRPLEKQGVDFWWLDWQQGNRT 163 (292)
T ss_pred HHHHhcCCCcccCCeEEecCCCHHHHHHH---HHHHHHHHHhcCCcEEEecCCCCccc
Confidence 111111 24565555444 344443332 234 467889999764
No 193
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=29.26 E-value=4.9e+02 Score=24.70 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=55.4
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCch
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~ 160 (362)
+..+-++..++.|+. ++.++..+--.|. .+..+ .+++.++++.+.+.|..-+ .|. |- .|...
T Consensus 115 ~~~~~v~~ak~~G~~-v~~~i~~~f~~~~-~~~~~---~~~~~~~~~~~~~~Ga~~i-~l~---------DT-~G~~~-- 176 (274)
T cd07938 115 RFEPVAELAKAAGLR-VRGYVSTAFGCPY-EGEVP---PERVAEVAERLLDLGCDEI-SLG---------DT-IGVAT-- 176 (274)
T ss_pred HHHHHHHHHHHCCCe-EEEEEEeEecCCC-CCCCC---HHHHHHHHHHHHHcCCCEE-EEC---------CC-CCccC--
Confidence 445558899999984 7777777765566 56777 7789999999999998643 332 22 45555
Q ss_pred hHHHHHHHHHHHHHHhCC
Q 018009 161 IVKDFTAYADVCFRQFGD 178 (362)
Q Consensus 161 ~~~~f~~ya~~~~~~~~d 178 (362)
+..+.++++.+.+++++
T Consensus 177 -P~~v~~lv~~l~~~~~~ 193 (274)
T cd07938 177 -PAQVRRLLEAVLERFPD 193 (274)
T ss_pred -HHHHHHHHHHHHHHCCC
Confidence 44666777777777754
No 194
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=29.19 E-value=1e+02 Score=29.67 Aligned_cols=61 Identities=20% Similarity=0.425 Sum_probs=43.2
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhh
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY 153 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~ 153 (362)
.++-+++++++|+..+-+++= +.=++..+++|+++++.+.+++| +|.+|--..|.-++..|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccC
Confidence 477799999999999998761 12368899999999999999976 56666555676655433
No 195
>PRK06256 biotin synthase; Validated
Probab=29.15 E-value=95 Score=30.16 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHcCCCeeeecc-cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee
Q 018009 81 KYKEDVKLMADTGLDAYRFSI-SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si-~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
.-+|.++.|+++|++.+-+++ +=.++.+.-...- .++...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~---t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTH---TYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCC---CHHHHHHHHHHHHHcCCeeccCe
Confidence 557899999999999988876 3222444311111 26677789999999999865543
No 196
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=28.57 E-value=4.3e+02 Score=25.35 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=56.1
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCC
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~ 158 (362)
.++.++-++..++.|+. ++.+|+=+---|. .|..+ .+++.++++.+.+.|..- +.|. |- .|..+
T Consensus 119 l~~~~~~v~~ak~~g~~-v~~~i~~~~~~~~-~~~~~---~~~~~~~~~~~~~~G~d~-i~l~---------DT-~G~~~ 182 (287)
T PRK05692 119 LERFEPVAEAAKQAGVR-VRGYVSCVLGCPY-EGEVP---PEAVADVAERLFALGCYE-ISLG---------DT-IGVGT 182 (287)
T ss_pred HHHHHHHHHHHHHcCCE-EEEEEEEEecCCC-CCCCC---HHHHHHHHHHHHHcCCcE-EEec---------cc-cCccC
Confidence 33456678888999974 6766665444466 56777 788999999999999874 4442 33 45555
Q ss_pred chhHHHHHHHHHHHHHHhCC
Q 018009 159 RTIVKDFTAYADVCFRQFGD 178 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d 178 (362)
| ....+.++.+.+++++
T Consensus 183 P---~~v~~lv~~l~~~~~~ 199 (287)
T PRK05692 183 P---GQVRAVLEAVLAEFPA 199 (287)
T ss_pred H---HHHHHHHHHHHHhCCC
Confidence 4 4666777777777765
No 197
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.52 E-value=1e+02 Score=31.89 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=40.7
Q ss_pred cHHHHHHHHHcCCCeeeeccc--ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 018009 82 YKEDVKLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~--W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (362)
-++-+++|+++|++.+-++++ =.++...=....+ .+-..+.|+.++++||.+.+.+. +++|
T Consensus 286 d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 356689999999998888873 2223222111234 45678999999999999877654 3444
No 198
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=28.32 E-value=64 Score=33.58 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCC-eeEEeecCCCCcHhHHhhhCCCCC
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGI-QPHVTLHHFDLPQALEDEYGGWIN 158 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g---~g~~n~~~~~~y~~~i~~l~~~Gi-~p~vtL~H~~~P~~l~~~~gg~~~ 158 (362)
++-++.|+++|++ |+||.-.-.-++- -|+- -..+-..+.++.+++.|+ .+-++|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg----------- 332 (488)
T PRK08207 269 EEKLEVLKKYGVD--RISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG----------- 332 (488)
T ss_pred HHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC-----------
Confidence 6789999999998 5555443333221 1331 135667889999999999 5556665 56662
Q ss_pred chhHHHHHHHHHHHHHHhCCCceEEEE
Q 018009 159 RTIVKDFTAYADVCFRQFGDRVSYWTT 185 (362)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t 185 (362)
++.+.|.+-.+.+.+.=-+.|.....
T Consensus 333 -Et~ed~~~tl~~l~~L~pd~isv~~L 358 (488)
T PRK08207 333 -EGLEEVKHTLEEIEKLNPESLTVHTL 358 (488)
T ss_pred -CCHHHHHHHHHHHHhcCcCEEEEEec
Confidence 23555666666554433344544433
No 199
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=28.26 E-value=2.9e+02 Score=26.19 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=47.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
+|.+| ++-++++|+.+.+.|+..++.+-+-+ =...-+.+...+..+.+++.-+++++.+.-....+
T Consensus 13 ~g~iD---~~~~~~~i~~l~~~Gv~Gi~~~GstG-----------E~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s 78 (285)
T TIGR00674 13 DGSVD---FAALEKLIDFQIENGTDAIVVVGTTG-----------ESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNA 78 (285)
T ss_pred CCCcC---HHHHHHHHHHHHHcCCCEEEECccCc-----------ccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCcc
Confidence 58999 55578999999999999999775411 11112355777778888888888888776655544
Q ss_pred c
Q 018009 191 A 191 (362)
Q Consensus 191 ~ 191 (362)
.
T Consensus 79 ~ 79 (285)
T TIGR00674 79 T 79 (285)
T ss_pred H
Confidence 3
No 200
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=28.23 E-value=41 Score=29.34 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=41.1
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEe
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVT 139 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 139 (362)
....++-+++++.+|++.+++...+-...+.. ...--....+.++++.+.+.++|+++.+=
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 55678889999999999999997641111110 01111235677888888899999886653
No 201
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=28.21 E-value=1.9e+02 Score=27.84 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=38.1
Q ss_pred cHHHHHHHHHcCCCeee-eccc-c-----cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 82 YKEDVKLMADTGLDAYR-FSIS-W-----SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R-~si~-W-----~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
.+|.++.||++|++.+- .+.+ . .++.|. ... .+.+.+.++.+++.||++..++-
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~---~~t---~~~~l~~i~~a~~~Gi~~~s~~i 166 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN---KLS---SDEWLEVIKTAHRLGIPTTATMM 166 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC---CCC---HHHHHHHHHHHHHcCCCceeeEE
Confidence 47889999999999885 2321 2 122233 233 45677999999999999987764
No 202
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=27.83 E-value=5.9e+02 Score=24.99 Aligned_cols=137 Identities=14% Similarity=0.087 Sum_probs=76.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHh----------HHhhhCC-----CCC---chhHHHHHHHHHHH
Q 018009 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA----------LEDEYGG-----WIN---RTIVKDFTAYADVC 172 (362)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~----------l~~~~gg-----~~~---~~~~~~f~~ya~~~ 172 (362)
.+-++.+.+..++++.+.++++|-..++=|.|.+.-.. ......+ .+. +++++.|++=|+.+
T Consensus 72 ~~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a 151 (337)
T PRK13523 72 LGIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRA 151 (337)
T ss_pred eecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 35578889999999999999999999999999653110 0000000 111 14667777766555
Q ss_pred HHHhCCCceEEEEecCCCcccccccccCCC-CCCC--CCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHccCCCC
Q 018009 173 FRQFGDRVSYWTTVNEPNAFANLGYDYGIA-PPQR--CSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQR 249 (362)
Q Consensus 173 ~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p~~~~ 249 (362)
.+.==|-|. +-.-+||+...| -|.. +.+ ..+- .+-|-+.--.+.++.+|+.. +
T Consensus 152 ~~aGfDgVe---------ih~ahGyLl~qFlSp~~N~RtD----~yGG-------slenR~Rf~~eii~~ir~~~----~ 207 (337)
T PRK13523 152 KEAGFDVIE---------IHGAHGYLINEFLSPLSNKRTD----EYGG-------SPENRYRFLREIIDAVKEVW----D 207 (337)
T ss_pred HHcCCCEEE---------EccccchHHHHhcCCccCCcCC----CCCC-------CHHHHHHHHHHHHHHHHHhc----C
Confidence 543113222 234567877655 3422 111 1111 23343444455667777754 2
Q ss_pred ceEEEeeecCccccCCCcHHHH
Q 018009 250 GYIGVNIFAFGLLPLTNSTEDA 271 (362)
Q Consensus 250 gkIG~~~~~~~~yP~s~~p~D~ 271 (362)
..||+-++.....+...+++|.
T Consensus 208 ~~v~vRis~~d~~~~G~~~~e~ 229 (337)
T PRK13523 208 GPLFVRISASDYHPGGLTVQDY 229 (337)
T ss_pred CCeEEEecccccCCCCCCHHHH
Confidence 4688877765544444456664
No 203
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=27.66 E-value=1.9e+02 Score=28.23 Aligned_cols=84 Identities=12% Similarity=0.197 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCCeeeecc--------cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCC
Q 018009 84 EDVKLMADTGLDAYRFSI--------SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG 155 (362)
Q Consensus 84 eDi~l~~~lG~~~~R~si--------~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg 155 (362)
+=++.+++.|+|+|=..= .|... +.++.++.++++++.++++|++-+.+|+ |.....
T Consensus 19 ~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~-------Yp~~el~~l~~L~~~a~~~~V~Fv~ais----Pg~~~~---- 83 (306)
T PF07555_consen 19 DLIRFLGRYKMNTYIYAPKDDPYHRSKWREP-------YPEEELAELKELADAAKANGVDFVYAIS----PGLDIC---- 83 (306)
T ss_dssp HHHHHHHHTT--EEEE--TT-TTTTTTTTS----------HHHHHHHHHHHHHHHHTT-EEEEEEB----GTTT------
T ss_pred HHHHHHHHcCCceEEECCCCChHHHhhhccc-------CCHHHHHHHHHHHHHHHHcCCEEEEEEC----cccccc----
Confidence 457888999999987542 34333 3456789999999999999999999997 644321
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCCceEEEE
Q 018009 156 WINRTIVKDFTAYADVCFRQFGDRVSYWTT 185 (362)
Q Consensus 156 ~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 185 (362)
+. .-+.+....+++-+-+.--|+..-+
T Consensus 84 ~s---~~~d~~~L~~K~~ql~~lGvr~Fai 110 (306)
T PF07555_consen 84 YS---SEEDFEALKAKFDQLYDLGVRSFAI 110 (306)
T ss_dssp TS---HHHHHHHHHHHHHHHHCTT--EEEE
T ss_pred cC---cHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 12 3456666666666666656666543
No 204
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.29 E-value=2.3e+02 Score=27.60 Aligned_cols=62 Identities=13% Similarity=0.219 Sum_probs=44.5
Q ss_pred cHHHHHHHHHcCCCeeeecc----cccc---cccC----C--CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHh
Q 018009 82 YKEDVKLMADTGLDAYRFSI----SWSR---LIPN----G--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA 148 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si----~W~r---i~P~----g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~ 148 (362)
.++=|+.|+..++|.+.+-+ +|.- -.|+ | .|.+.++ -++++++.++++||++|.-+. +|..
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~---di~elv~yA~~rgI~vIPEId---~PGH 93 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQE---QIREVVAYARDRGIRVVPEID---VPGH 93 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHH---HHHHHHHHHHHcCCEEEEeec---Cccc
Confidence 45668999999999888766 5643 3333 1 1346644 478999999999999998874 6654
Q ss_pred H
Q 018009 149 L 149 (362)
Q Consensus 149 l 149 (362)
.
T Consensus 94 ~ 94 (311)
T cd06570 94 A 94 (311)
T ss_pred h
Confidence 3
No 205
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=27.13 E-value=1.9e+02 Score=27.93 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHcCCe--eEEe---------------ecCCCCcHhHHhhhCCCCCc-h-hHHHHHHHHHHHHHHhCCC
Q 018009 119 LQYYNNLINELISYGIQ--PHVT---------------LHHFDLPQALEDEYGGWINR-T-IVKDFTAYADVCFRQFGDR 179 (362)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~--p~vt---------------L~H~~~P~~l~~~~gg~~~~-~-~~~~f~~ya~~~~~~~~d~ 179 (362)
.+.|.++++.+++.||+ .++. +++-.+|.|+.++....... + ..+.=.+||....+.+.+.
T Consensus 188 ~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 188 VESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred hHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 44577888999999855 2222 35678999998887666433 2 1222334454444443332
Q ss_pred -c--eEEEEecCCCcc
Q 018009 180 -V--SYWTTVNEPNAF 192 (362)
Q Consensus 180 -v--~~w~t~NEp~~~ 192 (362)
| -+..|+|-+...
T Consensus 268 gv~GvH~yt~n~~~~~ 283 (296)
T PRK09432 268 GVKDFHFYTLNRAELT 283 (296)
T ss_pred CCCEEEEecCCChHHH
Confidence 2 233468877654
No 206
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=27.02 E-value=84 Score=25.80 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCCeeeeccc-cccc-ccCCCCCCChhhhHHHHHHHHHHHHcCCee
Q 018009 83 KEDVKLMADTGLDAYRFSIS-WSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQP 136 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~-W~ri-~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p 136 (362)
++.++.+++.|++.+++|++ -+.- ..+--+ ....++...+.++.++++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999984 3331 111001 1134677889999999999995
No 207
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.55 E-value=3.7e+02 Score=25.09 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=38.2
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEE
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 138 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~v 138 (362)
..++|-+++++++|++.+=+++.-....|. .-.++ -....++-+.+.++||++..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~-~~~~~---~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLS-RLDWS---REQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhh-ccCCC---HHHHHHHHHHHHHcCCCcee
Confidence 357899999999999999987654322222 11222 23466788889999998753
No 208
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=26.52 E-value=1.3e+02 Score=32.67 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCc-----hhHHHHHHHHHHHHHHhCCCceEEEEecCCCc
Q 018009 124 NLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR-----TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (362)
Q Consensus 124 ~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~-----~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (362)
.++.+.++++=..-+....|..|.|+. +||..+ .++.+..++..-+.+.++=.++|--++||=..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~ 185 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGF 185 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS--
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCC
Confidence 577888888877777777899999995 454332 23444456666677888888888888999764
No 209
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=26.50 E-value=36 Score=24.49 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHHHHHHH-HcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHH
Q 018009 123 NNLINELI-SYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA 169 (362)
Q Consensus 123 ~~~i~~l~-~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya 169 (362)
+++++.|. .+||+|.+|.. .|-. +-+++++.|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~------Le~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQK------LEKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHH------HHHHCHHHHHHhh
Confidence 57888884 66999998874 5532 3455677777763
No 210
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.29 E-value=94 Score=28.99 Aligned_cols=60 Identities=8% Similarity=0.144 Sum_probs=37.9
Q ss_pred cCcHHHHHHHHHcCCCeeeeccccccc-ccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri-~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
...++=|+.++++|++.+|+. ..... .|. ....-...++.++++.+.+.++||+..+=.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLA-GYDVYYEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEC-Ccccccccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 345666888999999999974 11111 111 1111123456788888999999998776443
No 211
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=26.09 E-value=63 Score=19.28 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCee
Q 018009 122 YNNLINELISYGIQP 136 (362)
Q Consensus 122 y~~~i~~l~~~Gi~p 136 (362)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 457788888899987
No 212
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=26.06 E-value=52 Score=23.94 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=24.9
Q ss_pred HHHHHHHHH-cCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHH
Q 018009 123 NNLINELIS-YGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA 169 (362)
Q Consensus 123 ~~~i~~l~~-~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya 169 (362)
++.++.|.+ +||+|.+|.. .|-. +-+++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~~-----VW~~------LekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTRF-----VWYL------LEKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHHH-----HHHH------HHHHHHHHHHHHh
Confidence 567766664 9999998764 5642 4456777887773
No 213
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=26.05 E-value=1.1e+02 Score=28.97 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=32.6
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHH
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINEL 129 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l 129 (362)
.+...+||+.++++|++.+=|++- -| +|.+|. +..+++++.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L----~~--dg~vD~---~~~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL----DV--DGHVDM---PRMRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE----CC--CCCcCH---HHHHHHHHHh
Confidence 455788999999999999999873 22 588994 4566777776
No 214
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=25.89 E-value=54 Score=30.49 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=13.9
Q ss_pred CCCceEEEEecCCCc
Q 018009 177 GDRVSYWTTVNEPNA 191 (362)
Q Consensus 177 ~d~v~~w~t~NEp~~ 191 (362)
+..+++++.||||+.
T Consensus 63 ~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDL 77 (239)
T ss_pred ccCccceeeecCCCC
Confidence 778999999999996
No 215
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=25.80 E-value=2e+02 Score=28.29 Aligned_cols=95 Identities=17% Similarity=0.239 Sum_probs=60.3
Q ss_pred cCcHHHHHHHHHcCCCeeeecc--cccccccCC-------CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCC------
Q 018009 80 HKYKEDVKLMADTGLDAYRFSI--SWSRLIPNG-------RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD------ 144 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si--~W~ri~P~g-------~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~------ 144 (362)
.+.++=++++++.|+|++=+.+ ++-.|-=.. .|... ..+.-.+++++.|+++||.||-=+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~-~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVK-PYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccc-ccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 4678889999999999999988 455543210 12211 1134477999999999999987766442
Q ss_pred -CcHhHHhhhC----------CCCCc---hhHHHHHHHHHHHHHH
Q 018009 145 -LPQALEDEYG----------GWINR---TIVKDFTAYADVCFRQ 175 (362)
Q Consensus 145 -~P~~l~~~~g----------g~~~~---~~~~~f~~ya~~~~~~ 175 (362)
.|.|....-+ .|.+| ++.+.-.+-|+.+++.
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 3544331112 27655 5666666666666643
No 216
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=25.61 E-value=1e+02 Score=28.23 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=32.1
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecC
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (362)
.....+||+.++++|++.+=|+. +-+ +|.+| .+..+++++.+. |+-..+|
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~----L~~--dg~iD---~~~~~~Li~~a~-----~~~~tFH 120 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGA----LTE--DGEID---EEALEELIEAAG-----GMPVTFH 120 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE------BET--TSSB----HHHHHHHHHHHT-----TSEEEE-
T ss_pred HHHHHHHHHHHHHcCCCeeEEEe----ECC--CCCcC---HHHHHHHHHhcC-----CCeEEEe
Confidence 34577899999999999999986 222 58899 455677777765 4444456
No 217
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=25.15 E-value=6.6e+02 Score=24.63 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=77.7
Q ss_pred cccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCc---------HhHHhhhC-----CCCC---chhHHHHHHH
Q 018009 106 LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP---------QALEDEYG-----GWIN---RTIVKDFTAY 168 (362)
Q Consensus 106 i~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P---------~~l~~~~g-----g~~~---~~~~~~f~~y 168 (362)
..|...+-++++.+..++++++.++++|-+.++=|.|.+.- .-...... ..+. .++++.|++=
T Consensus 63 ~~~~~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~a 142 (353)
T cd02930 63 LGPGGPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARC 142 (353)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 33433456788899999999999999999999999996431 00000000 1111 2356666665
Q ss_pred HHHHHHHhCCCceEEEEecCCCcccccccccCCC-CCCC--CCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHcc
Q 018009 169 ADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA-PPQR--CSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQ 245 (362)
Q Consensus 169 a~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~~~~~~~a~hnlllAHA~Av~~~r~~~p 245 (362)
|+.+.+.==|-|. +..-+||+...| -|.. +.+ .++- .+-|-..--...++.+|+..+
T Consensus 143 A~~a~~aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD----~yGG-------slenR~r~~~eiv~aIR~~vG 202 (353)
T cd02930 143 AALAREAGYDGVE---------IMGSEGYLINQFLAPRTNKRTD----EWGG-------SFENRMRFPVEIVRAVRAAVG 202 (353)
T ss_pred HHHHHHcCCCEEE---------EecccchHHHHhcCCccCCCcC----ccCC-------CHHHHhHHHHHHHHHHHHHcC
Confidence 5554443213333 224457877655 2321 111 1111 133334444567777887653
Q ss_pred CCCCceEEEeeecCccccCCCcHHHH
Q 018009 246 DKQRGYIGVNIFAFGLLPLTNSTEDA 271 (362)
Q Consensus 246 ~~~~gkIG~~~~~~~~yP~s~~p~D~ 271 (362)
. +..||+-++.....+...++++.
T Consensus 203 ~--d~~v~iRi~~~D~~~~g~~~~e~ 226 (353)
T cd02930 203 E--DFIIIYRLSMLDLVEGGSTWEEV 226 (353)
T ss_pred C--CceEEEEecccccCCCCCCHHHH
Confidence 2 34577777654443333345553
No 218
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=24.97 E-value=2.1e+02 Score=21.75 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=31.6
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee
Q 018009 87 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 87 ~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
+.++.+|+.++|-| . +.-+.+-++++++.++ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS--------s-----~rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS--------S-----SRGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC--------C-----CCcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 56789999999999 2 2235677889999999 777777765
No 219
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=24.95 E-value=47 Score=29.08 Aligned_cols=44 Identities=7% Similarity=0.102 Sum_probs=33.8
Q ss_pred cccccccCChhhHHhhccCCCCCCHHHHHHhcCCCcEEEEccCccc
Q 018009 287 NPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIV 332 (362)
Q Consensus 287 Dpl~~G~YP~~~~~~l~~~~p~~t~~D~e~ik~~~DFiGiNYY~s~ 332 (362)
...+.|+..+.+..++. ...+.|.|...|..++|||.|.-++.-
T Consensus 71 ravl~Gkv~EqlaP~lp--~F~ynP~D~RFlG~PVD~IvF~Gls~~ 114 (156)
T PF10107_consen 71 RAVLKGKVSEQLAPFLP--EFPYNPKDARFLGSPVDFIVFDGLSDG 114 (156)
T ss_pred HHHHcchhHHHhhhccC--CCCCChhhheecCCCceEEEEcCCCCC
Confidence 34577887777766652 235789999999999999999999873
No 220
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.50 E-value=3e+02 Score=28.13 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=62.1
Q ss_pred cCcHHHHHHHHHcCCCeeeeccc-c------cccccCCC---CCC-ChhhhHHHHHHHHHHHHcCCeeEEeec-------
Q 018009 80 HKYKEDVKLMADTGLDAYRFSIS-W------SRLIPNGR---GPV-NPKGLQYYNNLINELISYGIQPHVTLH------- 141 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~-W------~ri~P~g~---g~~-n~~~~~~y~~~i~~l~~~Gi~p~vtL~------- 141 (362)
.+..+-++.++.||+|++=+.+. + |.+.|.-. |.. -..|.+-...+|++.+++||+++.=+.
T Consensus 64 ~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~ 143 (418)
T COG1649 64 QELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPP 143 (418)
T ss_pred HHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCC
Confidence 35677789999999999987762 1 22333311 111 124567788999999999999764221
Q ss_pred ----CCCCcHhHHhh--------hCC-----CC---CchhHHHHHHHHHHHHHHhC
Q 018009 142 ----HFDLPQALEDE--------YGG-----WI---NRTIVKDFTAYADVCFRQFG 177 (362)
Q Consensus 142 ----H~~~P~~l~~~--------~gg-----~~---~~~~~~~f~~ya~~~~~~~~ 177 (362)
|-..|.|+..+ .+| |. .+++.+...+-+..++++|.
T Consensus 144 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 144 TSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred CChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC
Confidence 12234444332 234 33 35777888888888899986
No 221
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=24.22 E-value=1.1e+02 Score=25.97 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=40.1
Q ss_pred cHHHHHHHHHcCCCeeeeccccc-ccccCC-C-CCCChhhhHHHHHHHHHHHHcCCeeEEeec
Q 018009 82 YKEDVKLMADTGLDAYRFSISWS-RLIPNG-R-GPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~-ri~P~g-~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (362)
-+++++.|+++|+..+.+|++-. .-.-.. . +.. .++.+-+.|+.++++|+...+.+.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGE---SFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCc---CHHHHHHHHHHHHHcCCCceEEEE
Confidence 47899999999999999999633 221110 0 222 266788888999998888776653
No 222
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=24.07 E-value=2.2e+02 Score=26.52 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCC---CCchhHHHHHHHHHHHHHHhCCCce
Q 018009 121 YYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW---INRTIVKDFTAYADVCFRQFGDRVS 181 (362)
Q Consensus 121 ~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~---~~~~~~~~f~~ya~~~~~~~~d~v~ 181 (362)
..++++++..++|++-+.-.-|..+|..... ..| .+.+..+.|.+-++.+-++|+++|+
T Consensus 16 ~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~ 77 (253)
T TIGR01856 16 TLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLK 77 (253)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCe
Confidence 4679999999999999999999765432211 112 1223344555555666788887655
No 223
>PRK10658 putative alpha-glucosidase; Provisional
Probab=23.92 E-value=4.7e+02 Score=28.41 Aligned_cols=103 Identities=16% Similarity=0.210 Sum_probs=60.6
Q ss_pred HHHHHHcCC--CeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCC---CCcHhHHhh--------
Q 018009 86 VKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE-------- 152 (362)
Q Consensus 86 i~l~~~lG~--~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~~l~~~-------- 152 (362)
++.+++.|+ +++-+.+.|.+-.--+.=.+|.+.+---+.+|++|++.|++.++.+.-+ +.|.+-+..
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~ 368 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKR 368 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEEC
Confidence 466666665 4666666665421101123344444345689999999999998876532 222221110
Q ss_pred ----------------hCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 153 ----------------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 153 ----------------~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
+-.++|++..+.|.+..+.+.+ .| ---+|.=+||+.
T Consensus 369 ~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G-vdgfw~D~gE~~ 420 (665)
T PRK10658 369 PDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG-VDCFKTDFGERI 420 (665)
T ss_pred CCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC-CcEEEecCCcee
Confidence 0125788999999888877554 33 234567788863
No 224
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=23.85 E-value=1.8e+02 Score=25.81 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=45.6
Q ss_pred ccCcHHHHHHHHHcCCCeeeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCC
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL 145 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si--~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~ 145 (362)
...|.+-++...+.|.+.+|..- .|.. .. ..+.+..|+..+|.+.... |+..|+.||.
T Consensus 104 i~~~~~~~~~a~~~G~~~lRv~ge~~w~~-----~~--~~~~l~~yE~~ln~~~~~~--~~~~lC~Yd~ 163 (191)
T PF14417_consen 104 IAFWRAALEQALAEGYRGLRVIGEMTWAL-----RS--GWEELLRYEALLNRLFAEH--PFTALCAYDR 163 (191)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEechhhc-----cc--cHHHHHHHHHHHHHHhcCC--CEEEEeccch
Confidence 44566667788888999999986 4542 22 5778999999999999887 8888988773
No 225
>PRK10426 alpha-glucosidase; Provisional
Probab=23.78 E-value=6.7e+02 Score=27.05 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=64.3
Q ss_pred cHHHHHHHHHcCCCeeeecc-cccccccCCCC-------CCChhhhHHHHHHHHHHHHcCCeeEEeecCC---CCcHhHH
Q 018009 82 YKEDVKLMADTGLDAYRFSI-SWSRLIPNGRG-------PVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALE 150 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~ri~P~g~g-------~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~~l~ 150 (362)
..+-++.+++.|+..==+-+ .|.......-| .+|.+-+--.+++|+.|++.|++.++.+.-+ +.|.+-+
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e 302 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEE 302 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHH
Confidence 34456777888865544433 58654322111 3355555557899999999999988877633 3333322
Q ss_pred hh---h------C---------------CCCCchhHHHHHHHHHHHHHHhCCCceEE-EEecCC
Q 018009 151 DE---Y------G---------------GWINRTIVKDFTAYADVCFRQFGDRVSYW-TTVNEP 189 (362)
Q Consensus 151 ~~---~------g---------------g~~~~~~~~~f~~ya~~~~~~~~d~v~~w-~t~NEp 189 (362)
.+ | | .++|++..+.|.+..+.-+...| |+.| .=+||+
T Consensus 303 ~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 303 AAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 11 0 1 16788888888876655444444 5555 788994
No 226
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=23.44 E-value=2.3e+02 Score=27.97 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=43.7
Q ss_pred cHHHHHHHHHcCCCeeeecc----cccccc---cC----C----CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 018009 82 YKEDVKLMADTGLDAYRFSI----SWSRLI---PN----G----RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si----~W~ri~---P~----g----~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (362)
.++-|+.|+..++|.+.+-+ +|.-=. |+ | .|.+.+ +=++++|+.++++||++|.-+ |+|
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~---~di~eiv~yA~~rgI~vIPEI---D~P 93 (348)
T cd06562 20 IKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTP---EDVKEIVEYARLRGIRVIPEI---DTP 93 (348)
T ss_pred HHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECH---HHHHHHHHHHHHcCCEEEEec---cCc
Confidence 56678999999999988655 243211 21 1 133553 447899999999999999877 577
Q ss_pred HhHH
Q 018009 147 QALE 150 (362)
Q Consensus 147 ~~l~ 150 (362)
....
T Consensus 94 GH~~ 97 (348)
T cd06562 94 GHTG 97 (348)
T ss_pred hhhH
Confidence 6543
No 227
>PRK08508 biotin synthase; Provisional
Probab=23.43 E-value=1.8e+02 Score=27.69 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=39.6
Q ss_pred cHHHHHHHHHcCCCeeeeccccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee
Q 018009 82 YKEDVKLMADTGLDAYRFSISWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
.+|.++.|++.|++++-.+++=+ ++.|.-...-+ ++...+.++.+++.||++--++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~---~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHT---WEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCC---HHHHHHHHHHHHHcCCeeccee
Confidence 58999999999999999887333 46666211122 5556678888999999765443
No 228
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=23.27 E-value=3.7e+02 Score=25.31 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=46.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
+|.+|. +-+++.|+.+.+.|+..++.+-+-+ -...-+.+...+.++.+.++-++++..+.-...++
T Consensus 15 dg~iD~---~~~~~~i~~l~~~Gv~gl~v~GstG-----------E~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 80 (284)
T cd00950 15 DGSVDF---DALERLIEFQIENGTDGLVVCGTTG-----------ESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN 80 (284)
T ss_pred CCCcCH---HHHHHHHHHHHHcCCCEEEECCCCc-----------chhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCcc
Confidence 588995 4578999999999999998775421 11222356777778888888888887766555444
No 229
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.27 E-value=4.9e+02 Score=24.06 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=36.6
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEE
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 138 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~v 138 (362)
.+++-++.++++|++.+=+++.=.+..+. ...++. ....++-+.+.++||+...
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~-~~~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLA-RLDWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccc-cccCCH---HHHHHHHHHHHHcCCCceE
Confidence 46889999999999999887541111111 123342 3466788899999999764
No 230
>PLN02229 alpha-galactosidase
Probab=23.03 E-value=2.1e+02 Score=29.28 Aligned_cols=50 Identities=24% Similarity=0.404 Sum_probs=32.9
Q ss_pred HHHcCCCeeeecccccccccCCCCCC--ChhhhHH-HHHHHHHHHHcCCeeEE
Q 018009 89 MADTGLDAYRFSISWSRLIPNGRGPV--NPKGLQY-YNNLINELISYGIQPHV 138 (362)
Q Consensus 89 ~~~lG~~~~R~si~W~ri~P~g~g~~--n~~~~~~-y~~~i~~l~~~Gi~p~v 138 (362)
++++|.+.+-+.--|..-.-+..|.+ |++-+-. .+.+.|.+++.|++-=+
T Consensus 94 l~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGI 146 (427)
T PLN02229 94 LADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGI 146 (427)
T ss_pred HHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEE
Confidence 48999999999999963221213432 4332211 67899999999998543
No 231
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.92 E-value=5e+02 Score=24.08 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEE
Q 018009 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 138 (362)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~v 138 (362)
.+++-++.++++|++.+=+++.=....+. ...++. ...+.+-+.++++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~-~~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLA-RLDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchh-ccCCCH---HHHHHHHHHHHHcCCceeE
Confidence 57899999999999999875421111111 112232 3466788888999999753
No 232
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.80 E-value=2.2e+02 Score=26.88 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=37.8
Q ss_pred cHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecC
Q 018009 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (362)
..+-++.++++|.+++-+.+..+|.-.. ..++...++ .+-+.+.++|+.......|
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~--~~~~~~~~~---~~~~~~~~~~~~~~~i~~H 68 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRR--PMLEEEVID---WFKAALETNKNLSQIVLVH 68 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCC--CCCCHHHHH---HHHHHHHHcCCCCcceecc
Confidence 3567899999999999999888886543 334443333 3444578888874434455
No 233
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=22.62 E-value=90 Score=28.49 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=21.8
Q ss_pred hhhHHHH-HHHHHHHHhhhhcccccccCCCCCCCeeeeeechh
Q 018009 2 MLRLSFL-LMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAY 43 (362)
Q Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~atsa~ 43 (362)
|-||+++ +++||++|.+.+....- +.|-|.++.++-
T Consensus 1 mk~i~~l~l~lll~~C~~~~~~~~~------~~~~W~~~~~~P 37 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTNPNEPLQ------PYFEWRFGVAAP 37 (216)
T ss_pred ChHHHHHHHHHHHHhhcCCCccCCC------CCCccEEEEecC
Confidence 5666665 45567777665554111 667787777643
No 234
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.61 E-value=1.8e+02 Score=25.11 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=33.3
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEE
Q 018009 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 138 (362)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~v 138 (362)
++.++++|++.+=+.......... . -...+++.+.++++||++..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~-------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K-------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H-------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c-------hHHHHHHHHHHHHcCCeEEE
Confidence 478899999998887765544322 1 35678999999999999554
No 235
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.28 E-value=1.1e+02 Score=28.56 Aligned_cols=56 Identities=7% Similarity=0.089 Sum_probs=36.5
Q ss_pred cCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhh----hHHHHHHHHHHHHcCCeeEEee
Q 018009 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKG----LQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~----~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
.++++-|++.+++|.+.+++.- .-.+. +.-+.+. .+..+++.+.++++||...+=.
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~---~~~~~--~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAG---YDVYY--EQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECC---ccccc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 3466778999999999999741 11111 1222333 4566788888899998776644
No 236
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=22.16 E-value=3.7e+02 Score=27.55 Aligned_cols=56 Identities=25% Similarity=0.440 Sum_probs=40.0
Q ss_pred cccCcHHHH-----HHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCc
Q 018009 78 GYHKYKEDV-----KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (362)
Q Consensus 78 ~~~~~~eDi-----~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (362)
.|++|.+|+ ++..+-|++.||+.=. .| .+.-.+.-|++.+++|.....+++--..|
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFDA-----------lN--D~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIFDA-----------LN--DVRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEechh-----------cc--chhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 478888884 7788999999996421 22 14456778889999999988888743333
No 237
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.06 E-value=1.8e+02 Score=29.97 Aligned_cols=116 Identities=10% Similarity=0.029 Sum_probs=61.0
Q ss_pred CChhhHHHH--HHHH---HHHHHHHHHHHHccCCCCceEEEeeecCccccCCC--cHHHHHHHHHHHhhhccccccccc-
Q 018009 219 STEPYITVH--HVLL---AHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTN--STEDAIATQRYYDFLIGWMANPLV- 290 (362)
Q Consensus 219 ~~~~~~a~h--nlll---AHA~Av~~~r~~~p~~~~gkIG~~~~~~~~yP~s~--~p~D~~Aa~~~~~~~~~~flDpl~- 290 (362)
..+.+|++. |... -+.+|+.+++......++.+.|+--....-.-..+ .--|.+..++.+ ..--..|.+
T Consensus 555 E~elF~aI~ehnvsyPKslSkEAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~iDWek~E~~e---iqPPfkPk~k 631 (683)
T KOG0696|consen 555 EDELFQAIMEHNVSYPKSLSKEAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRRIDWEKLERRE---IQPPFKPKIK 631 (683)
T ss_pred HHHHHHHHHHccCcCcccccHHHHHHHHHHhhcCCccccCCCCccccchhhCcchhhccHHHHhhcc---CCCCCCCccc
Confidence 345666553 3221 14567888876544444567776543221100000 012223322211 111223444
Q ss_pred cccCChhhHHhhccCCCCCCHHHHHHhcC--CCcEEEEccCccceeccC
Q 018009 291 YGDYPKIMKQNVGSRLPAFSDRESKQVKG--SADFLGVINYYIVYVKDN 337 (362)
Q Consensus 291 ~G~YP~~~~~~l~~~~p~~t~~D~e~ik~--~~DFiGiNYY~s~~v~~~ 337 (362)
.|+--+.+-+.+.+.-+..|+-|...+.+ .-||.|++|-.+.+|+..
T Consensus 632 ~~r~~eNFD~~Ft~~~~~lTPpD~~v~~nldq~eF~gFsfvNpefv~~~ 680 (683)
T KOG0696|consen 632 CGRDAENFDKFFTREPTDLTPPDKLVMMNLDQSEFEGFSFVNPEFVKPI 680 (683)
T ss_pred cCCchhhhhHHHhcCCCCCCCchHHHHhcCchhhcCceeeeChhhcCCC
Confidence 44433444444444467889999998864 459999999999888764
No 238
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=21.96 E-value=2.3e+02 Score=30.18 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHH
Q 018009 120 QYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (362)
Q Consensus 120 ~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 174 (362)
+....+++.++++|+-.=+...|-.++.-+..+|| -+.+..++.-.+|++.|-+
T Consensus 145 e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG-~tpegmVeSAle~~~i~e~ 198 (606)
T PRK00694 145 EKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYG-DTIEGMVYSALEYIEVCEK 198 (606)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhC-CCHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999998886 3445577777777777644
No 239
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.91 E-value=2.8e+02 Score=26.43 Aligned_cols=73 Identities=11% Similarity=0.030 Sum_probs=51.2
Q ss_pred CCccccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHH
Q 018009 75 ACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALE 150 (362)
Q Consensus 75 a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~ 150 (362)
+.+..+...+=.+.+|++|++.+|-+..=+|--|.+ +.--+.+.++.+-+.+++.||..+-+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s---~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYS---FQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCc---cCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 445566677778889999999999997446665543 1111244566677778999999999998755555443
No 240
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=21.86 E-value=1.3e+02 Score=29.41 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=35.0
Q ss_pred cHHHHHHHHHcCCCeeeec----cccc---ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee
Q 018009 82 YKEDVKLMADTGLDAYRFS----ISWS---RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~s----i~W~---ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
.+|.++.||++|++.+-.. ++.. ++.|. ..+ .+-+.+.++.+++.||+...++
T Consensus 142 ~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~---~~s---~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 142 LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK---KIS---SEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC---CCC---HHHHHHHHHHHHHcCCCcccee
Confidence 3889999999999977421 1111 11122 222 5567899999999999866554
No 241
>PRK05474 xylose isomerase; Provisional
Probab=21.78 E-value=5.1e+02 Score=26.63 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHH----HHHHcCCee-EEeecCCCCcHhHHhhhCCCC
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLIN----ELISYGIQP-HVTLHHFDLPQALEDEYGGWI 157 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~----~l~~~Gi~p-~vtL~H~~~P~~l~~~~gg~~ 157 (362)
+.-++.+++||+..|-|-= ..|.|+| .-..+..+.++++++ .+.+.||+. ++|..-|..|... .|+++
T Consensus 82 d~afe~~~kLg~~~~~FHD--~D~~peg--~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~---~GA~T 154 (437)
T PRK05474 82 DAAFEFFTKLGVPYYCFHD--VDVAPEG--ASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYM---AGAAT 154 (437)
T ss_pred HHHHHHHHHhCCCeeccCc--cccCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCcccc---CCcCC
Confidence 3346679999999876642 2467774 222333334455554 456789885 5667778899875 38899
Q ss_pred Cch
Q 018009 158 NRT 160 (362)
Q Consensus 158 ~~~ 160 (362)
|++
T Consensus 155 npd 157 (437)
T PRK05474 155 NPD 157 (437)
T ss_pred CCC
Confidence 876
No 242
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.76 E-value=2.4e+02 Score=27.83 Aligned_cols=62 Identities=21% Similarity=0.359 Sum_probs=42.4
Q ss_pred cHHHHHHHHHcCCCeeeecc----cc-------cccccCC--------------------CCCCChhhhHHHHHHHHHHH
Q 018009 82 YKEDVKLMADTGLDAYRFSI----SW-------SRLIPNG--------------------RGPVNPKGLQYYNNLINELI 130 (362)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si----~W-------~ri~P~g--------------------~g~~n~~~~~~y~~~i~~l~ 130 (362)
.++=|+.|+..++|.+.+-+ +| +.+-..| .|.+- -+=++++++.++
T Consensus 20 ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA~ 96 (357)
T cd06563 20 VKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHHHHHH
Confidence 56668999999999988765 23 2221111 13344 345789999999
Q ss_pred HcCCeeEEeecCCCCcHhH
Q 018009 131 SYGIQPHVTLHHFDLPQAL 149 (362)
Q Consensus 131 ~~Gi~p~vtL~H~~~P~~l 149 (362)
++||++|.-+ |+|...
T Consensus 97 ~rgI~VIPEI---D~PGH~ 112 (357)
T cd06563 97 ERGITVIPEI---DMPGHA 112 (357)
T ss_pred HcCCEEEEec---CCchhH
Confidence 9999999876 466554
No 243
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.72 E-value=1.9e+02 Score=25.68 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=45.1
Q ss_pred CcCCccccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEe
Q 018009 73 DIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (362)
Q Consensus 73 ~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 139 (362)
..+.|.+-.-...+..+..+.++.++++.++-+-... |.......+.+++.+++.|++++++
T Consensus 148 ~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 148 RIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQT-----DPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhcc-----ChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 3566666555677888888888888888877654333 2223567889999999999998875
No 244
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=21.69 E-value=1e+02 Score=32.22 Aligned_cols=100 Identities=19% Similarity=0.352 Sum_probs=49.7
Q ss_pred HHcCCCeeeecccccccccC------CCCCCChhh-------hHHHHHHHHHHHHc--CCeeEEeecCCCCcHhHHhh--
Q 018009 90 ADTGLDAYRFSISWSRLIPN------GRGPVNPKG-------LQYYNNLINELISY--GIQPHVTLHHFDLPQALEDE-- 152 (362)
Q Consensus 90 ~~lG~~~~R~si~W~ri~P~------g~g~~n~~~-------~~~y~~~i~~l~~~--Gi~p~vtL~H~~~P~~l~~~-- 152 (362)
..+|++..|..|.=+..-.. .++.++.+. .++--.+|.++++. +|+.+.+- |.-|.|+-..
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~ 187 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WSPPAWMKTNGS 187 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S---GGGBTTSS
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CCCCHHHccCCc
Confidence 45899999988733222111 122222221 11222466665543 35666554 8999998432
Q ss_pred h--CCCCC----chhHHHHHHHHHHHHHHhCCC-ceEE--EEecCCCc
Q 018009 153 Y--GGWIN----RTIVKDFTAYADVCFRQFGDR-VSYW--TTVNEPNA 191 (362)
Q Consensus 153 ~--gg~~~----~~~~~~f~~ya~~~~~~~~d~-v~~w--~t~NEp~~ 191 (362)
+ +|.+. ++..+.|++|-.+.++.|+.. |+.| .+-|||..
T Consensus 188 ~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~ 235 (496)
T PF02055_consen 188 MNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDN 235 (496)
T ss_dssp SCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCG
T ss_pred CcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCC
Confidence 1 24443 345677788777788888763 6666 58899985
No 245
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=21.69 E-value=4.8e+02 Score=24.39 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=46.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceEEEEecCCC
Q 018009 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (362)
+|.+| ++-+++.++.+.+.|+.-++.+-+-+ + ...-+.+...+.++.+.+..+++++...-...++
T Consensus 12 dg~iD---~~~~~~~i~~l~~~Gv~gi~~~GstG-------E----~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 77 (281)
T cd00408 12 DGEVD---LDALRRLVEFLIEAGVDGLVVLGTTG-------E----APTLTDEERKEVIEAVVEAVAGRVPVIAGVGANS 77 (281)
T ss_pred CCCcC---HHHHHHHHHHHHHcCCCEEEECCCCc-------c----cccCCHHHHHHHHHHHHHHhCCCCeEEEecCCcc
Confidence 58999 55588999999999999988775421 1 1111255777777888887778887666555544
Q ss_pred c
Q 018009 191 A 191 (362)
Q Consensus 191 ~ 191 (362)
.
T Consensus 78 ~ 78 (281)
T cd00408 78 T 78 (281)
T ss_pred H
Confidence 3
No 246
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=21.65 E-value=2.1e+02 Score=33.12 Aligned_cols=61 Identities=18% Similarity=0.337 Sum_probs=40.9
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccc--------------------------cc-----cccCCCCCC--C---h-hhhHH
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISW--------------------------SR-----LIPNGRGPV--N---P-KGLQY 121 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W--------------------------~r-----i~P~g~g~~--n---~-~~~~~ 121 (362)
|.-.-+-|+.+|+||++++-+.=-. -= .-|+ +.+ | . ..++-
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape--~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALS--GMYSEDPKDPELRIAE 556 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccc--cccccCCcCccccHHH
Confidence 5556677999999999999765321 10 0011 111 1 1 12567
Q ss_pred HHHHHHHHHHcCCeeEEeec
Q 018009 122 YNNLINELISYGIQPHVTLH 141 (362)
Q Consensus 122 y~~~i~~l~~~Gi~p~vtL~ 141 (362)
+++||++|+++||++|+++.
T Consensus 557 fK~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHHCCCEEEEecc
Confidence 99999999999999999854
No 247
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=21.49 E-value=98 Score=29.75 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=34.3
Q ss_pred cccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHh
Q 018009 100 SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA 148 (362)
Q Consensus 100 si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~ 148 (362)
=+.+.-.+..| .+|++-++++|+.+++.|+.+++++=+.|+|.-
T Consensus 58 K~gla~f~~~G-----~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~nT 101 (278)
T PRK00125 58 KPQIAYFEAHG-----AEGLAQLERTIAYLREAGVLVIADAKRGDIGST 101 (278)
T ss_pred eccHHHHHhcC-----chhhhHHHHHHHHHHHCCCcEEEEeecCChHHH
Confidence 34444454443 467889999999999999999999999999853
No 248
>PLN02923 xylose isomerase
Probab=20.93 E-value=9.4e+02 Score=24.87 Aligned_cols=101 Identities=21% Similarity=0.255 Sum_probs=53.6
Q ss_pred HHHHHcCCCeeeeccc-ccccc-----cCCCC----CCC------hhhhHHHHHHHHHHHHcCCeeEEeecCCCCcHhHH
Q 018009 87 KLMADTGLDAYRFSIS-WSRLI-----PNGRG----PVN------PKGLQYYNNLINELISYGIQPHVTLHHFDLPQALE 150 (362)
Q Consensus 87 ~l~~~lG~~~~R~si~-W~ri~-----P~g~g----~~n------~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~ 150 (362)
+.|++ +.||++. |.-+- |-|.+ +++ +.+....+-.++.+.+.|+ |.+|.|--|+=.
T Consensus 78 K~M~e----hlRFav~yWHTf~~~G~DpFG~~T~~rpw~~~~d~m~~A~~k~daaFEf~~kLG~-~y~cFHD~Dl~P--- 149 (478)
T PLN02923 78 KKMKD----WMRFSVAFWHTFRGTGGDPFGAPTKYWPWEDGTNSLAMAKRRMRANFEFLKKLGV-DRWCFHDRDIAP--- 149 (478)
T ss_pred ccHHH----hhhhhheeeeecCCCCCCCCCCCcCCCCcccCCCHHHHHHHHHHHHHHHHHHhCC-CeEccCccccCC---
Confidence 55665 6899874 63332 22222 223 1266777888889999997 677888766421
Q ss_pred hhhCCC--CCchhHHHHHHHHHHHHHHhCCCceEEEEecCCCcccccccccCC
Q 018009 151 DEYGGW--INRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGI 201 (362)
Q Consensus 151 ~~~gg~--~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~ 201 (362)
. |.= ...+..+.-.++.+...+.-|-+ +.|+-+|+++.--|+.|.
T Consensus 150 -e-g~sl~E~~~nld~ivd~~ke~~~~TGik----llwgTaNlFshPrf~~GA 196 (478)
T PLN02923 150 -D-GKTLEESNANLDEVVALAKELQEGTKIR----PLWGTAQLFKHPRYMHGA 196 (478)
T ss_pred -C-CCCHHHHHhhHHHHHHHHHHHhHhhCce----eeeeccccccCccccCCc
Confidence 1 111 11223444444444444444322 344445566554555543
No 249
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=20.92 E-value=2.8e+02 Score=29.78 Aligned_cols=55 Identities=13% Similarity=0.270 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcCCeeEEeecCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHH
Q 018009 120 QYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQ 175 (362)
Q Consensus 120 ~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~ 175 (362)
+....+++.++++|+-.=+...|-.++.-+..+|| -+.+..++.-.+|++.|-+.
T Consensus 141 e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg-~tpe~mVeSAle~~~i~e~~ 195 (611)
T PRK02048 141 DRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYG-DTPEGMVESCMEFLRICVEE 195 (611)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhC-CChHHHHHHHHHHHHHHHHC
Confidence 56778999999999999999999999999998886 34455777777787777543
No 250
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=20.77 E-value=2.4e+02 Score=25.96 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=30.5
Q ss_pred ccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCee
Q 018009 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP 136 (362)
Q Consensus 79 ~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p 136 (362)
.-.-+.-++++++||.+++.| +|- .|.=. ++-|+.+-++|.++|+..
T Consensus 134 ~V~vetAiaml~dmG~~SiKf-------fPm-~Gl~~---leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 134 IVPVETAIAMLKDMGGSSIKF-------FPM-GGLKH---LEELKAVAKACARNGFTL 180 (218)
T ss_dssp EEEHHHHHHHHHHTT--EEEE-----------TTTTT---HHHHHHHHHHHHHCT-EE
T ss_pred cccHHHHHHHHHHcCCCeeeE-------eec-CCccc---HHHHHHHHHHHHHcCcee
Confidence 445677899999999999976 677 35433 666778888888888653
No 251
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.50 E-value=1.8e+02 Score=25.85 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=47.7
Q ss_pred CCcCCccccCcHHHHHHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEe
Q 018009 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (362)
Q Consensus 72 ~~~a~d~~~~~~eDi~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 139 (362)
...+.|.+-.-..+++.+.++.++.++++-++-+-... |...-+..+.++..+++.|++++++
T Consensus 146 ~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 146 VRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIET-----DPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred CeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhc-----ChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 44677777788888999999999999988766543322 1334567888999999999998875
No 252
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=20.47 E-value=2.4e+02 Score=25.84 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=34.9
Q ss_pred HHHHHcCCCeeeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEee
Q 018009 87 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (362)
Q Consensus 87 ~l~~~lG~~~~R~si~W~ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (362)
+++|++|++..=++=+=.| +.+ . | ..+-+..++++||.|+++.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~E-t---d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKL-A---D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCc-c---H------HHHHHHHHHHCCCEEEEEE
Confidence 7899999999988887777 333 1 1 4577889999999999999
No 253
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=20.41 E-value=2e+02 Score=31.66 Aligned_cols=62 Identities=24% Similarity=0.435 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCeeeecccccccccC---C-----CCCCChh--hhHHHHHHHHHHHHcCCeeEEeecCCCCcHhH
Q 018009 83 KEDVKLMADTGLDAYRFSISWSRLIPN---G-----RGPVNPK--GLQYYNNLINELISYGIQPHVTLHHFDLPQAL 149 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~P~---g-----~g~~n~~--~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~~l 149 (362)
++=++.+++|||.++=.|=-|.-. |. | +.++|++ |.+-+.+++.++++.||-.|+++ .|..+
T Consensus 22 ~~~l~yl~~LGIShLY~SPIftA~-pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DI----VPNHM 93 (889)
T COG3280 22 RALLDYLADLGISHLYLSPIFTAR-PGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDI----VPNHM 93 (889)
T ss_pred HHhhHHHHhcCchheeccchhhcC-CCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEe----cccch
Confidence 455778899999998887655433 11 0 1145554 66779999999999999999998 46655
No 254
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=20.17 E-value=7.3e+02 Score=24.00 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCeeEEeecCC---CCcHhHHhh--------------h-----------CCCCCchhHHHHHHHHHHH
Q 018009 121 YYNNLINELISYGIQPHVTLHHF---DLPQALEDE--------------Y-----------GGWINRTIVKDFTAYADVC 172 (362)
Q Consensus 121 ~y~~~i~~l~~~Gi~p~vtL~H~---~~P~~l~~~--------------~-----------gg~~~~~~~~~f~~ya~~~ 172 (362)
-.+++|+.|++.|+++++.+.-+ +.+....+. | -.++|++..+.|.+-.+..
T Consensus 72 dp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 151 (317)
T cd06594 72 GLDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEM 151 (317)
T ss_pred CHHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHH
Confidence 35678888888888877766533 223221110 0 1156788888887777765
Q ss_pred HHHhCCCceEEEEecCCC
Q 018009 173 FRQFGDRVSYWTTVNEPN 190 (362)
Q Consensus 173 ~~~~~d~v~~w~t~NEp~ 190 (362)
....| ---+|.=+||+.
T Consensus 152 ~~~~G-vdg~w~D~~E~~ 168 (317)
T cd06594 152 LLDLG-LSGWMADFGEYL 168 (317)
T ss_pred hhhcC-CcEEEecCCCCC
Confidence 44443 234568899964
No 255
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=20.05 E-value=2.3e+02 Score=28.99 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=49.5
Q ss_pred CccccCcHHHHHHHHHcCCCeeeec----ccccc-cccC-CC-CCCC-hhhhHHHHHHHHHHHHcCCeeEEeecCCCCcH
Q 018009 76 CDGYHKYKEDVKLMADTGLDAYRFS----ISWSR-LIPN-GR-GPVN-PKGLQYYNNLINELISYGIQPHVTLHHFDLPQ 147 (362)
Q Consensus 76 ~d~~~~~~eDi~l~~~lG~~~~R~s----i~W~r-i~P~-g~-g~~n-~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 147 (362)
-...+.++++++.+.++|.+.+.+- ..|.+ .+.. +. ..++ .+.++.|+..++.|.++|-++ ..+.||..|.
T Consensus 215 gqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~far~~ 293 (453)
T PRK13347 215 HQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHFALPD 293 (453)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-EeccceeCCC
Confidence 3456678999999999999877653 24532 2110 11 1223 356889999999999999988 5788888774
No 256
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=20.02 E-value=7.7e+02 Score=23.55 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCCeeeeccc-ccccccCC--CCC----C-ChhhhHHHHHHHHHHHHcC---CeeEEeecCCCCcHhHHh
Q 018009 83 KEDVKLMADTGLDAYRFSIS-WSRLIPNG--RGP----V-NPKGLQYYNNLINELISYG---IQPHVTLHHFDLPQALED 151 (362)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~-W~ri~P~g--~g~----~-n~~~~~~y~~~i~~l~~~G---i~p~vtL~H~~~P~~l~~ 151 (362)
.+.|+-.-++|.|++=+.|. |+.=.|.- .|. . +....+..+++++.+++.- -+--++|.-+|+
T Consensus 10 ~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDl------ 83 (265)
T cd08576 10 LEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFVWLDL------ 83 (265)
T ss_pred HHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEEEEEc------
Confidence 56778888999999999984 43222220 111 1 4455677788888887763 222333322232
Q ss_pred hhCCCCCchhHHHHHHHHHHHHHHhCCC---ceEEEEecCCCc
Q 018009 152 EYGGWINRTIVKDFTAYADVCFRQFGDR---VSYWTTVNEPNA 191 (362)
Q Consensus 152 ~~gg~~~~~~~~~f~~ya~~~~~~~~d~---v~~w~t~NEp~~ 191 (362)
|-+++......+...+.|+.+.++|... +.-++.+..|.+
T Consensus 84 K~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~ 126 (265)
T cd08576 84 KNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSI 126 (265)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccc
Confidence 4466677788999999999999999955 888899998875
Done!