Query 018010
Match_columns 362
No_of_seqs 289 out of 1269
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02125 PA_VSR PA_VSR: Proteas 100.0 3E-29 6.5E-34 214.2 14.5 127 48-175 1-127 (127)
2 cd02123 PA_C_RZF_like PA_C-RZF 99.9 1.9E-22 4E-27 177.7 14.9 121 40-170 22-142 (153)
3 cd02122 PA_GRAIL_like PA _GRAI 99.9 1.9E-22 4.1E-27 174.7 14.2 117 45-175 18-138 (138)
4 cd02126 PA_EDEM3_like PA_EDEM3 99.9 3.2E-22 7E-27 170.7 13.5 117 45-175 3-126 (126)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 4.4E-22 9.4E-27 168.0 13.8 114 48-176 1-117 (118)
6 cd02132 PA_GO-like PA_GO-like: 99.9 2.2E-21 4.8E-26 168.2 14.2 121 39-175 16-139 (139)
7 cd04813 PA_1 PA_1: Protease-as 99.8 2.5E-20 5.4E-25 157.1 11.6 104 45-166 6-110 (117)
8 cd02129 PA_hSPPL_like PA_hSPPL 99.8 4.1E-19 9E-24 149.9 11.4 93 66-174 27-119 (120)
9 KOG3920 Uncharacterized conser 99.8 1E-19 2.2E-24 157.0 4.9 154 1-169 1-165 (193)
10 cd04816 PA_SaNapH_like PA_SaNa 99.8 3.1E-18 6.8E-23 145.0 14.0 114 49-175 8-122 (122)
11 cd02130 PA_ScAPY_like PA_ScAPY 99.8 6.3E-18 1.4E-22 143.1 13.2 109 49-175 14-122 (122)
12 cd04818 PA_subtilisin_1 PA_sub 99.8 1.9E-17 4.2E-22 139.2 13.7 113 46-175 2-118 (118)
13 cd02124 PA_PoS1_like PA_PoS1_l 99.7 3.4E-16 7.5E-21 134.1 12.7 91 67-175 39-129 (129)
14 cd04817 PA_VapT_like PA_VapT_l 99.7 1.1E-15 2.5E-20 132.2 12.8 104 49-171 27-137 (139)
15 KOG4628 Predicted E3 ubiquitin 99.6 1.3E-15 2.8E-20 148.5 13.1 116 41-169 35-151 (348)
16 cd00538 PA PA: Protease-associ 99.5 3.9E-14 8.5E-19 119.0 11.1 99 67-175 28-126 (126)
17 PF02225 PA: PA domain; Inter 99.5 9.1E-15 2E-19 118.4 6.8 72 86-165 30-101 (101)
18 KOG2442 Uncharacterized conser 99.5 1.4E-13 3E-18 137.4 11.0 131 32-177 41-177 (541)
19 cd02133 PA_C5a_like PA_C5a_lik 99.4 3.2E-12 6.9E-17 111.1 14.0 107 47-176 15-121 (143)
20 cd04819 PA_2 PA_2: Protease-as 99.4 9E-12 2E-16 106.4 12.3 104 56-174 21-126 (127)
21 cd04815 PA_M28_2 PA_M28_2: Pro 99.2 3.7E-11 8E-16 103.6 8.7 102 56-175 15-134 (134)
22 cd02120 PA_subtilisin_like PA_ 99.2 3.8E-10 8.2E-15 95.3 11.3 84 69-170 37-121 (126)
23 cd02128 PA_TfR PA_TfR: Proteas 98.9 1.1E-08 2.3E-13 92.5 11.0 107 55-167 26-155 (183)
24 cd02121 PA_GCPII_like PA_GCPII 98.3 3.1E-06 6.7E-11 78.9 10.4 124 56-193 43-207 (220)
25 cd04822 PA_M28_1_3 PA_M28_1_3: 98.2 5.4E-06 1.2E-10 73.0 8.3 96 56-166 18-133 (151)
26 cd04814 PA_M28_1 PA_M28_1: Pro 98.2 6E-06 1.3E-10 72.0 8.0 70 46-124 11-100 (142)
27 cd04820 PA_M28_1_1 PA_M28_1_1: 98.1 1.2E-05 2.6E-10 69.7 7.3 63 56-124 20-96 (137)
28 cd02131 PA_hNAALADL2_like PA_h 98.0 1.8E-05 3.8E-10 69.4 7.0 106 55-166 12-138 (153)
29 KOG2195 Transferrin receptor a 95.0 0.14 3.1E-06 55.4 10.3 186 88-308 183-411 (702)
30 cd04821 PA_M28_1_2 PA_M28_1_2: 93.8 0.089 1.9E-06 46.7 4.5 39 86-124 46-103 (157)
31 COG2234 Iap Predicted aminopep 51.2 56 0.0012 33.0 7.6 83 90-176 104-187 (435)
32 COG4882 Predicted aminopeptida 30.9 3.7E+02 0.0079 27.5 9.3 71 88-162 88-160 (486)
33 COG1786 Swiveling domain assoc 30.5 3.5E+02 0.0077 23.3 8.2 72 87-174 48-122 (131)
34 COG5540 RING-finger-containing 30.1 14 0.00031 36.2 -0.5 35 92-126 149-183 (374)
35 cd04727 pdxS PdxS is a subunit 27.2 63 0.0014 31.5 3.2 68 100-170 15-89 (283)
36 cd07027 RNAP_RPB11_like RPB11 25.8 3.3E+02 0.0071 21.4 6.9 38 156-196 21-59 (83)
37 cd07029 RNAP_I_III_AC19 AC19 s 25.6 3E+02 0.0065 21.7 6.4 38 156-196 21-59 (85)
38 TIGR00343 pyridoxal 5'-phospha 24.5 73 0.0016 31.1 3.2 55 100-157 17-77 (287)
39 PF07172 GRP: Glycine rich pro 22.6 46 0.00099 27.0 1.2 13 11-23 15-27 (95)
40 PRK11372 lysozyme inhibitor; P 22.5 1.1E+02 0.0025 25.3 3.6 15 1-15 1-15 (109)
41 PRK01146 DNA-directed RNA poly 22.1 4E+02 0.0086 21.0 7.0 37 156-195 23-60 (85)
42 PF13605 DUF4141: Domain of un 20.7 1E+02 0.0022 22.6 2.5 14 14-27 13-26 (55)
43 cd04468 S1_eIF5A S1_eIF5A: Euk 20.5 2.9E+02 0.0063 21.1 5.1 30 143-176 26-55 (69)
44 cd03028 GRX_PICOT_like Glutare 20.1 1.8E+02 0.0039 22.6 4.2 72 90-169 8-88 (90)
No 1
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.96 E-value=3e-29 Score=214.23 Aligned_cols=127 Identities=62% Similarity=1.063 Sum_probs=106.9
Q ss_pred cCCCCCCCCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCc
Q 018010 48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL 127 (362)
Q Consensus 48 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l 127 (362)
|||.|+||++++|.|+||+++.+||++++....+.+..+..+++|+||+||+|+|.+|++|||++||++|||||+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 79999999999999999999999999987632122223457799999999999999999999999999999999988878
Q ss_pred eecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010 128 ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (362)
Q Consensus 128 ~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (362)
++|..|+++. ..++..+++||+++|++++|+.|++.+.+|..|+++|
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 8887655421 1134467899999999999999999999999998875
No 2
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.89 E-value=1.9e-22 Score=177.67 Aligned_cols=121 Identities=29% Similarity=0.450 Sum_probs=100.8
Q ss_pred ceecceeccCCCCCCCCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEE
Q 018010 40 GVYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILV 119 (362)
Q Consensus 40 ~~~~~~~a~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII 119 (362)
..++...|+||.+++++.++|.+++ .+|.+||++++++. . ..+...++|+||+||+|+|.+|++|||++||+||||
T Consensus 22 ~~~~~~~A~FG~~~~~~~~~g~lv~-~~p~~gC~~~~~~~--~-~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII 97 (153)
T cd02123 22 DEFDDLPANFGPIPPGSGLKGVLVV-AEPLNACSPIENPP--L-NSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIV 97 (153)
T ss_pred ceEeeecccCCCCCCCCceEEEEEe-CCccccCCCCcccc--c-ccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEE
Confidence 4588889999999999999999876 56789999987531 0 124567999999999999999999999999999999
Q ss_pred EeCCCCCceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCe
Q 018010 120 ADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEM 170 (362)
Q Consensus 120 ~dn~~~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~ 170 (362)
+|+.++++..|...+. ...+++||+++|++++|+.|++.++.++.
T Consensus 98 ~n~~~~~~~~m~~~~~------~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 98 YNDESNDLISMSGNDQ------EIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EECCCCcceeccCCCC------CCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 9998777777753221 12478999999999999999999998876
No 3
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.89 E-value=1.9e-22 Score=174.68 Aligned_cols=117 Identities=25% Similarity=0.375 Sum_probs=96.7
Q ss_pred eeccCCCCCCCCceeEEEec--cCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeC
Q 018010 45 AIGNFGVPQYGGTLIGTVVY--PKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADD 122 (362)
Q Consensus 45 ~~a~FG~~~yg~~l~G~lv~--~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn 122 (362)
.+|+||.+.+++.+.|.+++ +.++.+||+++++. ...+...++|+||+||+|+|.+|++|||++||++|||||+
T Consensus 18 ~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~----~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~ 93 (138)
T cd02122 18 ESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRF----PIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNN 93 (138)
T ss_pred cccccCCCCCCCccEEEEecCCCCCCcCCCCCCccc----cCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEEC
Confidence 38999999999999998763 55678999998752 0024568999999999999999999999999999999999
Q ss_pred CC--CCceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010 123 KT--EPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (362)
Q Consensus 123 ~~--~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (362)
.+ +.++.|..++ ...||+++|++++|+.|++++++|.+|++++
T Consensus 94 ~~~~~~~~~m~~~~----------~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 94 PGTGNETVKMSHPG----------TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCCceeeccCCC----------CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 86 2356664221 3478999999999999999999999888763
No 4
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.88 E-value=3.2e-22 Score=170.70 Aligned_cols=117 Identities=24% Similarity=0.400 Sum_probs=94.2
Q ss_pred eeccCCCCCCCC-ceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCC
Q 018010 45 AIGNFGVPQYGG-TLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDK 123 (362)
Q Consensus 45 ~~a~FG~~~yg~-~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~ 123 (362)
.+|.||.+.... .+.|.|+. .+|.+||++..++ ..+.++|+||+||+|+|.+|+++||++||+||||+|+.
T Consensus 3 ~pa~FG~~~~~~~~~~g~l~~-~~p~~gC~~~~~~-------~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~ 74 (126)
T cd02126 3 GPAQFGMDLTGDKAGVGRVVK-AKPYRACSEITNA-------EEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNN 74 (126)
T ss_pred CCcccCCcCCCCCCceEEEEe-CCchhcccCCCCc-------cccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECC
Confidence 578999887654 68898876 4578999988653 24679999999999999999999999999999999987
Q ss_pred CCC------ceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010 124 TEP------LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (362)
Q Consensus 124 ~~~------l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (362)
+++ ++.|....+ ....++||+++|++.+|+.|+++++++.+|++.|
T Consensus 75 ~~~~~~~~~~~~m~~~~~------~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 75 EGSSSDTAPMFAMSGDGD------STDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred CCccccccceeEeecCCC------CCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 653 345532110 1236899999999999999999999998888764
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.88 E-value=4.4e-22 Score=168.03 Aligned_cols=114 Identities=25% Similarity=0.358 Sum_probs=91.8
Q ss_pred cCCCCCCCCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCC--
Q 018010 48 NFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTE-- 125 (362)
Q Consensus 48 ~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~-- 125 (362)
.||.+..+....|.++ +.+|.+||++..+. +.++++|+||+||+|+|.+|++|||++||+||||||+.++
T Consensus 1 ~~~~~~~~~~~~~~lv-~~~p~~gC~~~~~~-------~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 72 (118)
T cd02127 1 DFGTIFNTRYKHVPLV-PADPLEACEELRNI-------HDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSD 72 (118)
T ss_pred CCCccccccccceEEE-ECCccccCCCCCCc-------cccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 4787776666777664 46788999987653 3567999999999999999999999999999999998754
Q ss_pred -CceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEEE
Q 018010 126 -PLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLD 176 (362)
Q Consensus 126 -~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~ 176 (362)
..+.|...+ ...+++||+++|++++|+.|++.+++|.+|++.+.
T Consensus 73 ~~~~~m~~~~-------~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 73 EYYVEMIQDD-------SSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred ccceEecCCC-------CCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 234564321 13568999999999999999999999998876653
No 6
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.87 E-value=2.2e-21 Score=168.23 Aligned_cols=121 Identities=31% Similarity=0.426 Sum_probs=96.9
Q ss_pred cceecceeccCCCCCCC---CceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCc
Q 018010 39 KGVYECAIGNFGVPQYG---GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAA 115 (362)
Q Consensus 39 ~~~~~~~~a~FG~~~yg---~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~ 115 (362)
...|....|.||..... +.+.+.++. .++.+||+++++ .++++|+||+||+|+|.+|++|||++||+
T Consensus 16 ~~~~~~~~a~FG~~~p~~~~~~~~~~lv~-~~~~~gC~~~~~---------~~~g~IvLV~RG~C~F~~K~~nA~~aGA~ 85 (139)
T cd02132 16 GDELVGVTARFGASLPSKEDNANKTRAVL-ANPLDCCSPSTS---------KLSGSIALVERGECAFTEKAKIAEAGGAS 85 (139)
T ss_pred ccEEEeeccccCCCCCCcccCccEEEEEE-CCcccccCCCCc---------ccCCeEEEEECCCCCHHHHHHHHHHcCCc
Confidence 44688899999976543 346777655 467899998753 35799999999999999999999999999
Q ss_pred EEEEEeCCCCCceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010 116 AILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (362)
Q Consensus 116 avII~dn~~~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (362)
+|||||+.++ ++.|....+ +....++||+++|++++|+.|+++|++|..|++++
T Consensus 86 avIv~n~~~~-~~~~~~~~~-----~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 86 ALLIINDQEE-LYKMVCEDN-----DTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred EEEEEECCCc-ccccccCCC-----CCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 9999998754 455643222 12336899999999999999999999999888764
No 7
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.83 E-value=2.5e-20 Score=157.08 Aligned_cols=104 Identities=29% Similarity=0.337 Sum_probs=84.4
Q ss_pred eeccCCCCCCCCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCC
Q 018010 45 AIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKT 124 (362)
Q Consensus 45 ~~a~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~ 124 (362)
..|.||++ +...+++.. ..+|.+||++++. ++++++|+||+||+|+|.+|++|||++||++|||||+.+
T Consensus 6 ~~~~~~~~-~~~~~~~~~--~~~p~~gC~~~~~--------~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~ 74 (117)
T cd04813 6 RYASFSPI-LNPHLRGSY--KVSPTDACSLQEH--------AEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEP 74 (117)
T ss_pred cccccCCc-cCccccccc--cCCCCCCCCCCCc--------CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 35779954 556788763 4778899998843 356899999999999999999999999999999999876
Q ss_pred C-CceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhh
Q 018010 125 E-PLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS 166 (362)
Q Consensus 125 ~-~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~ 166 (362)
+ .+++|..+++ ...++||+++|++++|+.|+..+.
T Consensus 75 ~~~~~~m~~~~~-------~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 75 GRGLITMFSNGD-------TDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred cccceecccCCC-------CCCcEEEEEEEcHHHHHHHHHhcc
Confidence 4 4566754332 357899999999999999998874
No 8
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.80 E-value=4.1e-19 Score=149.88 Aligned_cols=93 Identities=25% Similarity=0.272 Sum_probs=72.8
Q ss_pred CCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCC
Q 018010 66 KANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQN 145 (362)
Q Consensus 66 ~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l~tM~~p~~~~~~~~~~~~ 145 (362)
.+|..||++.+.. ...++++|+||+||+|+|.+|++|||++||+|||||||.+.. .+ ... .+...+
T Consensus 27 ~~~~~gC~~~~~~------~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~--~~---~~~---~~~~~~ 92 (120)
T cd02129 27 LTSSVLCSASDVP------PGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV--PP---SGN---RSEYEK 92 (120)
T ss_pred CCCcCCCCccccC------ccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC--CC---CCC---CCCCcC
Confidence 5678999987653 135689999999999999999999999999999999987531 11 110 011257
Q ss_pred ccceEEEEehHhHHHHHHHhhCCCeEEEE
Q 018010 146 ITIPSALISKSLGDSIKKSLSGGEMVNMN 174 (362)
Q Consensus 146 i~IPsv~Isk~~G~~L~~~l~~g~~V~v~ 174 (362)
++||++||++++|+.|++.+.++ |+|.
T Consensus 93 v~IP~v~Is~~dG~~i~~~l~~~--~~v~ 119 (120)
T cd02129 93 IDIPVALLSYKDMLDIQQTFGDS--VKVA 119 (120)
T ss_pred CcccEEEEeHHHHHHHHHHhccC--cEEe
Confidence 89999999999999999999654 5544
No 9
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.78 E-value=1e-19 Score=157.02 Aligned_cols=154 Identities=22% Similarity=0.299 Sum_probs=122.1
Q ss_pred CcchhhHHHHHHHHhhcccceeE----E-EeeceEEEEccccccceecceecc-CCCCCCCCceeEEEeccCCCccCCCC
Q 018010 1 MREKLGFLVGILFLLCGLSFGRF----V-VEKNSLKVTSPEKIKGVYECAIGN-FGVPQYGGTLIGTVVYPKANQKACKG 74 (362)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~a~~~f----v-ve~~~l~V~~P~~l~~~~~~~~a~-FG~~~yg~~l~G~lv~~~~~~~gC~~ 74 (362)
|.+..||+|+++|+++.+|++-- . -+.-.|+|++|..|+.+|...+|. ||..-. .++.+.-+++++|..||+.
T Consensus 1 M~p~gWl~l~~~L~~~vaa~~~~~~~v~~qD~~~F~vlsP~~l~Yty~~~pAkdfG~~F~-~r~e~~~lV~adPp~aC~e 79 (193)
T KOG3920|consen 1 MKPRGWLLLSFLLIIQVAAAKIPYEEVENQDNMLFTVLSPYTLAYTYQMKPAKDFGVHFP-DRFENLELVLADPPHACEE 79 (193)
T ss_pred CCcceehHHHHHHHHHHHHccCCcceeeecceEEEEecCcccEEEEEEecchhhhccccc-hhhcCcceeecCChhHHHH
Confidence 78888999999999977665521 1 122458899999999999999885 997643 4777766677899999999
Q ss_pred CCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC-----ceecCCCCcccccccccCCccce
Q 018010 75 FDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP-----LITMDTPEEENADAEYLQNITIP 149 (362)
Q Consensus 75 ~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~-----l~tM~~p~~~~~~~~~~~~i~IP 149 (362)
+.+. -...+.|+|++||+|+|..|.+|+++|||.++||.|+.... .+.|- |++ +.++.+||
T Consensus 80 lrN~-------~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI-~D~------sq~~AniP 145 (193)
T KOG3920|consen 80 LRNE-------IFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMI-PDE------SQDRANIP 145 (193)
T ss_pred Hhhc-------ccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhc-Ccc------cccccCCc
Confidence 9774 13457899999999999999999999999999999876532 34563 332 34577999
Q ss_pred EEEEehHhHHHHHHHhhCCC
Q 018010 150 SALISKSLGDSIKKSLSGGE 169 (362)
Q Consensus 150 sv~Isk~~G~~L~~~l~~g~ 169 (362)
.+++-..+|-.++..|++-.
T Consensus 146 a~fllg~~Gy~ir~sL~r~~ 165 (193)
T KOG3920|consen 146 AVFLLGVTGYYIRVSLKRYF 165 (193)
T ss_pred eEEEeccceEEEehhHHHhC
Confidence 99999999999988887644
No 10
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.78 E-value=3.1e-18 Score=145.02 Aligned_cols=114 Identities=21% Similarity=0.332 Sum_probs=87.6
Q ss_pred CCCCCCCCceeEEEeccCC-CccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCc
Q 018010 49 FGVPQYGGTLIGTVVYPKA-NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL 127 (362)
Q Consensus 49 FG~~~yg~~l~G~lv~~~~-~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l 127 (362)
|+..-..+.++|.+++... ..+||++.+... +.++++|+||+||+|+|.+|++|||++||+++||+|+.++..
T Consensus 8 ~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~------~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~ 81 (122)
T cd04816 8 YSPSTPPGGVTAPLVPLDPERPAGCDASDYDG------LDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG 81 (122)
T ss_pred ccCCCCCCCcEEEEEEcCCCCccCCCccccCC------CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc
Confidence 5544445689999988543 358999875432 356899999999999999999999999999999999876433
Q ss_pred eecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010 128 ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (362)
Q Consensus 128 ~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (362)
..+....+ ....+||+++|++++|+.|++++++|.+|++++
T Consensus 82 ~~~~~~~~-------~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 82 TAGTLGAP-------NIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred ccccccCC-------CCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 22110010 135789999999999999999999998887764
No 11
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.77 E-value=6.3e-18 Score=143.08 Aligned_cols=109 Identities=25% Similarity=0.330 Sum_probs=85.0
Q ss_pred CCCCCCCCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCce
Q 018010 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLI 128 (362)
Q Consensus 49 FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l~ 128 (362)
|+..++ ++.+|.+++. +.+||.+.+.+ .+++++|+||+||+|+|.+|++||+++||++|||||+......
T Consensus 14 ~~~~~~-~~~~g~lv~~--~~~gC~~~~~~-------~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~ 83 (122)
T cd02130 14 FTYSPA-GEVTGPLVVV--PNLGCDAADYP-------ASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGL 83 (122)
T ss_pred cccCCC-CCcEEEEEEe--CCCCCCcccCC-------cCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 555555 4567999874 46799986543 2468999999999999999999999999999999998732211
Q ss_pred ecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010 129 TMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (362)
Q Consensus 129 tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (362)
....+. .....||+++|++++|+.|++.+++|++|+++|
T Consensus 84 ~~~~~~--------~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 84 SGTLGE--------PSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred ccccCC--------CCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 111111 235789999999999999999999999888764
No 12
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.75 E-value=1.9e-17 Score=139.20 Aligned_cols=113 Identities=33% Similarity=0.551 Sum_probs=90.8
Q ss_pred eccCCCCCCC---CceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeC
Q 018010 46 IGNFGVPQYG---GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADD 122 (362)
Q Consensus 46 ~a~FG~~~yg---~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn 122 (362)
+|.||..... ..+.|.++. .++.++|++.... ++++++|+|++||+|+|.+|+++|+++||+|+||+|+
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~-------~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~ 73 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAP-ASNTDGCTAFTNA-------AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANN 73 (118)
T ss_pred CcccCCcCccccccceeEEEec-CCcccccCCCCcC-------CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 5889966543 346777764 5688999987642 3478999999999999999999999999999999998
Q ss_pred CCCC-ceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010 123 KTEP-LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (362)
Q Consensus 123 ~~~~-l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (362)
.+++ .+.|..+. ....||+++|++++|+.|++++++|.+|+++|
T Consensus 74 ~~~~~~~~~~~~~---------~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 74 VAGGAPITMGGDD---------PDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred CCCCcceeccCCC---------CCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 7642 34564221 24679999999999999999999998888764
No 13
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.69 E-value=3.4e-16 Score=134.11 Aligned_cols=91 Identities=25% Similarity=0.387 Sum_probs=72.1
Q ss_pred CCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCc
Q 018010 67 ANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNI 146 (362)
Q Consensus 67 ~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l~tM~~p~~~~~~~~~~~~i 146 (362)
.+.+||++++.. .++++++|+||+||+|+|.+|++|||++||++|||||+.+++. .|. .. ...
T Consensus 39 ~~~~gC~~~~~~------~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~-~~~--~~--------~~~ 101 (129)
T cd02124 39 VADDACQPLPDD------TPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPT-DQV--GS--------DAD 101 (129)
T ss_pred CCcccCcCCCcc------cccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcc-ccc--CC--------CCc
Confidence 567899988542 1357899999999999999999999999999999999886543 232 11 123
Q ss_pred cceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010 147 TIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (362)
Q Consensus 147 ~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (362)
.||.+++ +++|+.|+++|++|..|+++|
T Consensus 102 ~~~~~~~-~~~G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 102 SIIAAVT-PEDGEAWIDALAAGSNVTVDF 129 (129)
T ss_pred ceeeEEe-HHHHHHHHHHHhcCCeEEEeC
Confidence 4566666 999999999999998888764
No 14
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.66 E-value=1.1e-15 Score=132.24 Aligned_cols=104 Identities=19% Similarity=0.220 Sum_probs=74.7
Q ss_pred CCCCCCCCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCC-----HHHHHHHHHhcCCcEEEEEeCC
Q 018010 49 FGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCY-----FTLKAWNAQKGGAAAILVADDK 123 (362)
Q Consensus 49 FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~Cs-----F~~Kv~nAq~aGA~avII~dn~ 123 (362)
|-..+..+.++|.+++.. .-+|+ +.. .+.+|+|+||+||+|+ |.+|++|||++||+|||||||.
T Consensus 27 ~~s~~~~g~~tg~lv~~g--~~g~d-~~~--------~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~ 95 (139)
T cd04817 27 YASMPVTGSATGSLYYCG--TSGGS-YIC--------GGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNA 95 (139)
T ss_pred ccccccCCcceEEEEEcc--CCCcc-ccC--------CCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCC
Confidence 433333457888887643 34462 211 2467999999999999 9999999999999999999998
Q ss_pred --CCCceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeE
Q 018010 124 --TEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMV 171 (362)
Q Consensus 124 --~~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V 171 (362)
++.+..|- .++ ...++||+++|++++|+.|++.|.++.+|
T Consensus 96 ~~~g~~~~~l-g~~-------~~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 96 ALAGLQNPFL-VDT-------NNDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred CCCCcccccc-cCC-------CCCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 33222221 111 12579999999999999999999655333
No 15
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-15 Score=148.48 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=93.8
Q ss_pred eecceeccCCCCCCCCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEE
Q 018010 41 VYECAIGNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVA 120 (362)
Q Consensus 41 ~~~~~~a~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~ 120 (362)
++...+|+||+....+.+.|.+ |++++.+||++..+.... ......+++||.||+|+|.+|++|||++|++|+|||
T Consensus 35 sf~d~~a~f~~s~~~e~~~G~l-~~~ep~~aC~~i~~~p~~---~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVy 110 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEGNLGVL-VVAEPLNACNPITNFPEH---STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVY 110 (348)
T ss_pred cccCCccccCCccccccceeee-ecCCCccccCccccCccC---CCCCcceEEEEEccCCchHHHHhhcccccCceEEEe
Confidence 6778899999998888899976 567788999998763111 234568999999999999999999999999999999
Q ss_pred eCCCCC-ceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCC
Q 018010 121 DDKTEP-LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGE 169 (362)
Q Consensus 121 dn~~~~-l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~ 169 (362)
||...+ ++.|. .+ ..++.|+++||+...|+.|+++.....
T Consensus 111 nn~~~~~lv~~~--~~-------~~~v~i~~~~vs~~~ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 111 NNVGSEDLVAMA--SN-------PSKVDIHIVFVSVFSGELLSSYAGRTE 151 (348)
T ss_pred cCCCCchheeec--cC-------CccceeEEEEEeeehHHHHHHhhcccc
Confidence 987654 55663 22 246899999999999999999765443
No 16
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.55 E-value=3.9e-14 Score=118.96 Aligned_cols=99 Identities=26% Similarity=0.336 Sum_probs=75.7
Q ss_pred CCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCc
Q 018010 67 ANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNI 146 (362)
Q Consensus 67 ~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l~tM~~p~~~~~~~~~~~~i 146 (362)
.+..+|.+... .+. ...++|+|+|++||+|+|.+|+++|+++||+|+||+++.+.....|....+ .....
T Consensus 28 ~~~~~C~~~~~---~~~-~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~------~~~~~ 97 (126)
T cd00538 28 GPLVGCGYGTT---DDS-GADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL------ESTDP 97 (126)
T ss_pred cceEEEecCcc---ccc-CCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccC------CCCCC
Confidence 45678987651 011 245789999999999999999999999999999999987643333322111 02356
Q ss_pred cceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010 147 TIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (362)
Q Consensus 147 ~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (362)
.||+++|++++|+.|++++.+|.+|++++
T Consensus 98 ~iP~~~is~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 98 SIPTVGISYADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred cEeEEEeCHHHHHHHHHHHhcCCceEEeC
Confidence 89999999999999999999988887653
No 17
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.55 E-value=9.1e-15 Score=118.45 Aligned_cols=72 Identities=29% Similarity=0.416 Sum_probs=55.1
Q ss_pred CCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCccceEEEEehHhHHHHHHHh
Q 018010 86 PGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSL 165 (362)
Q Consensus 86 ~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l 165 (362)
...+++|||++||.|+|.+|++|||++||+||||+|..... ..+. .. .....++||+++|++++|+.|++++
T Consensus 30 ~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~-~~~~--~~-----~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 30 SDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNN-GSMI--DS-----EDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp STCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSC-TTTT--CE-----BTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred ccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccc-cCcc--cc-----cCCCCcEEEEEEeCHHHHhhhhccC
Confidence 45789999999999999999999999999999999922211 1111 11 1234689999999999999999875
No 18
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.49 E-value=1.4e-13 Score=137.42 Aligned_cols=131 Identities=28% Similarity=0.393 Sum_probs=95.1
Q ss_pred EEccccccce----ecceeccCCCCCCCCceeEEEe--ccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHH
Q 018010 32 VTSPEKIKGV----YECAIGNFGVPQYGGTLIGTVV--YPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLK 105 (362)
Q Consensus 32 V~~P~~l~~~----~~~~~a~FG~~~yg~~l~G~lv--~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~K 105 (362)
+..|....+. +....+.||..+..-.-...+. .-.+|.|-|++... .+++++++|.||+|+|.+|
T Consensus 41 l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~---------kl~~~~~~v~RGnC~Ft~K 111 (541)
T KOG2442|consen 41 LKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQS---------KLSGKVALVFRGNCSFTEK 111 (541)
T ss_pred EeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCc---------cccceeEEEecccceeehh
Confidence 4455544332 3445777886654221111111 11367888987654 3579999999999999999
Q ss_pred HHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEEEe
Q 018010 106 AWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDW 177 (362)
Q Consensus 106 v~nAq~aGA~avII~dn~~~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~~ 177 (362)
+++||++||+|++|.||..+ +.-|..-+. ....+++||++||++++|+.|.+....++.|++.|+-
T Consensus 112 a~~Aq~aGAsaLliin~~~d-~~~~~~~~~-----~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYa 177 (541)
T KOG2442|consen 112 AKLAQAAGASALLIINNKKD-LLFMPCGNK-----ETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYA 177 (541)
T ss_pred hhhhhhcCceEEEEEcCchh-hccCCCCCC-----CccccccceEEEEEhhhHHHHHhhhccCCeEEEEEEC
Confidence 99999999999999999754 444532111 2346899999999999999999999999999999996
No 19
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.43 E-value=3.2e-12 Score=111.13 Aligned_cols=107 Identities=21% Similarity=0.177 Sum_probs=77.3
Q ss_pred ccCCCCCCCCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC
Q 018010 47 GNFGVPQYGGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP 126 (362)
Q Consensus 47 a~FG~~~yg~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~ 126 (362)
..|+.+...+...+.+++.. . |.+-+.. ..+++++|+|++||+|+|.+|+++|+++||+++||+|+..+.
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g---~-g~~~d~~------~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~ 84 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAG---L-GTPEDFE------GKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL 84 (143)
T ss_pred ccCCCcCCCCCcEEEEEEcc---C-CchhccC------CCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc
Confidence 34565555567888888743 2 2322221 135789999999999999999999999999999999987543
Q ss_pred ceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEEE
Q 018010 127 LITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLD 176 (362)
Q Consensus 127 l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~ 176 (362)
..|. . .....||+++|++++|+.|++++++ .+++++.
T Consensus 85 -~~~~--~--------~~~~~iP~v~Is~~dG~~L~~~l~~--~~~i~~~ 121 (143)
T cd02133 85 -IPGT--L--------GEAVFIPVVFISKEDGEALKAALES--SKKLTFN 121 (143)
T ss_pred -cccc--C--------CCCCeEeEEEecHHHHHHHHHHHhC--CCeEEEE
Confidence 2221 1 1135799999999999999999987 3444433
No 20
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.36 E-value=9e-12 Score=106.37 Aligned_cols=104 Identities=21% Similarity=0.120 Sum_probs=76.3
Q ss_pred CceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCC--CHHHHHHHHHhcCCcEEEEEeCCCCCceecCCC
Q 018010 56 GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC--YFTLKAWNAQKGGAAAILVADDKTEPLITMDTP 133 (362)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~C--sF~~Kv~nAq~aGA~avII~dn~~~~l~tM~~p 133 (362)
+.++|.+++.. .| .+-+ |. ..+++|+||||+||.| +|..|+.+|+++||+||||+|+.++.+..+...
T Consensus 21 ~~~~~~lV~~g---~G-~~~d-----~~-~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~ 90 (127)
T cd04819 21 GEAKGEPVDAG---YG-LPKD-----FD-GLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDE 90 (127)
T ss_pred CCeeEEEEEeC---CC-CHHH-----cC-CCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccc
Confidence 46789998853 33 2211 11 1347899999999999 999999999999999999998876544322111
Q ss_pred CcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEE
Q 018010 134 EEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMN 174 (362)
Q Consensus 134 ~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~ 174 (362)
.. .......||++.|+.++|+.|+++++.|..|.+.
T Consensus 91 ~~-----~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 91 GT-----EDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred cc-----cCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 10 1123468999999999999999999998877653
No 21
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.22 E-value=3.7e-11 Score=103.62 Aligned_cols=102 Identities=21% Similarity=0.178 Sum_probs=76.0
Q ss_pred CceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCC------CHHHH-------HHHHHhcCCcEEEEEeC
Q 018010 56 GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC------YFTLK-------AWNAQKGGAAAILVADD 122 (362)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~C------sF~~K-------v~nAq~aGA~avII~dn 122 (362)
+.++|.+++..++ + .+.. |. ...++|+||||+||.| +|..| ..+|+++||.|+||+|+
T Consensus 15 ~gvta~vv~v~~~--~--~~~~----~~-~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~ 85 (134)
T cd04815 15 EGITAEVVVVKSF--D--ELKA----AP-AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSI 85 (134)
T ss_pred CCcEEEEEEECCH--H--HHHh----cc-hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEec
Confidence 4589998875421 1 2211 10 1357899999999999 99999 69999999999999997
Q ss_pred CCCC---c-e-ecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEE
Q 018010 123 KTEP---L-I-TMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNL 175 (362)
Q Consensus 123 ~~~~---l-~-tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l 175 (362)
.+.. . . +|..+ .....||++.|+.++|+.|.+.+++|.+|+++|
T Consensus 86 ~~~~~~~~~~G~~~~~---------~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 86 GTDSHRSPHTGMMSYD---------DGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred CcccCCCCcCCccccC---------CCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 5432 1 1 22211 124679999999999999999999998888764
No 22
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.15 E-value=3.8e-10 Score=95.31 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=67.0
Q ss_pred ccCCCCCCCCCCccCCCCCCCCeEEEEecCCC-CHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCcc
Q 018010 69 QKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC-YFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNIT 147 (362)
Q Consensus 69 ~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~C-sF~~Kv~nAq~aGA~avII~dn~~~~l~tM~~p~~~~~~~~~~~~i~ 147 (362)
..+|++.... ....+|+|||++||.| +|.+|+.+|+++||.|+|++++..+.. .+. .....
T Consensus 37 ~~~C~~~~~~------~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~-~~~-----------~~~~~ 98 (126)
T cd02120 37 ASLCLPGSLD------PSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL-DVV-----------ADAHV 98 (126)
T ss_pred cccCCCCCCC------hhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc-eec-----------ccccc
Confidence 4689876432 1346899999999999 999999999999999999999875532 211 11357
Q ss_pred ceEEEEehHhHHHHHHHhhCCCe
Q 018010 148 IPSALISKSLGDSIKKSLSGGEM 170 (362)
Q Consensus 148 IPsv~Isk~~G~~L~~~l~~g~~ 170 (362)
||+++|++++|+.|+++++++..
T Consensus 99 iP~v~I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 99 LPAVHVDYEDGTAILSYINSTSN 121 (126)
T ss_pred cceEEECHHHHHHHHHHHHcCCC
Confidence 99999999999999999987643
No 23
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.91 E-value=1.1e-08 Score=92.52 Aligned_cols=107 Identities=23% Similarity=0.273 Sum_probs=69.9
Q ss_pred CCceeEEEeccCCCccCCCCCCCCCCccC-CCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC-------
Q 018010 55 GGTLIGTVVYPKANQKACKGFDEVDLSFK-SRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP------- 126 (362)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~-~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~------- 126 (362)
.++++|.++|. ..| ...+.. .+. ..-+++|+|+||+||.|+|.+|+++||++||+|||||++..+.
T Consensus 26 ~G~v~g~lVyv---n~G-~~~Df~--~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~ 99 (183)
T cd02128 26 AGTVTGKLVYA---NYG-RKKDFE--DLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSET 99 (183)
T ss_pred CCceEEEEEEc---CCC-CHHHHH--HHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcc
Confidence 35789999985 244 322211 011 0125689999999999999999999999999999999884211
Q ss_pred ------------ceecCCCCcccc---cccccCCccceEEEEehHhHHHHHHHhhC
Q 018010 127 ------------LITMDTPEEENA---DAEYLQNITIPSALISKSLGDSIKKSLSG 167 (362)
Q Consensus 127 ------------l~tM~~p~~~~~---~~~~~~~i~IPsv~Isk~~G~~L~~~l~~ 167 (362)
..|.+-|..... ..+...-.+||++-||..++..|++.|.-
T Consensus 100 ~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 100 ALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred eeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 011111111000 00001234799999999999999999953
No 24
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.35 E-value=3.1e-06 Score=78.90 Aligned_cols=124 Identities=23% Similarity=0.289 Sum_probs=79.8
Q ss_pred CceeEEEeccCCCccCCCCCCCCCCccC-CCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC--------
Q 018010 56 GTLIGTVVYPKANQKACKGFDEVDLSFK-SRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP-------- 126 (362)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~-~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~-------- 126 (362)
+.++|.+||.. .|...+.. .+. ..-+++|+|||+++|.|.+..|+++|+++||+|||||++..+.
T Consensus 43 g~v~g~lVyvn----yG~~~D~~--~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~ 116 (220)
T cd02121 43 GNVTAELVYAN----YGSPEDFE--YLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENG 116 (220)
T ss_pred CCceEEEEEcC----CCcHHHHH--HHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhccccccccc
Confidence 46899999853 45443221 111 0235789999999999999999999999999999999875221
Q ss_pred ------------ce----ec---CCCCcc-----cccc--------cccCCccceEEEEehHhHHHHHHHhhCCCeEEEE
Q 018010 127 ------------LI----TM---DTPEEE-----NADA--------EYLQNITIPSALISKSLGDSIKKSLSGGEMVNMN 174 (362)
Q Consensus 127 ------------l~----tM---~~p~~~-----~~~~--------~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~ 174 (362)
-+ .+ ..++|- ++.. ....-.+||+.=||..+++.|++.|.... +-
T Consensus 117 ~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~---~p 193 (220)
T cd02121 117 KTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG---AP 193 (220)
T ss_pred ccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC---CC
Confidence 00 00 111110 0000 01123479999999999999999997432 44
Q ss_pred EEeccCCCCCCCceEEEEE
Q 018010 175 LDWTEALPHPDERVEYEFW 193 (362)
Q Consensus 175 l~~~~~~p~pd~~Ve~~~w 193 (362)
-+|+..++ +.|.+|
T Consensus 194 ~~W~g~l~-----~~y~~g 207 (220)
T cd02121 194 SDWQGGLP-----VTYRLG 207 (220)
T ss_pred ccccCCCC-----CceeeC
Confidence 46765543 567765
No 25
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.22 E-value=5.4e-06 Score=73.00 Aligned_cols=96 Identities=19% Similarity=0.123 Sum_probs=65.5
Q ss_pred CceeEEEeccCC--CccCCCCCCCCCCccCCCCCCCCeEEEEecCC------------------CCHHHHHHHHHhcCCc
Q 018010 56 GTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGD------------------CYFTLKAWNAQKGGAA 115 (362)
Q Consensus 56 ~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~------------------CsF~~Kv~nAq~aGA~ 115 (362)
+.++|.+|+... ...+|...++.+ -+++|+||||.||. |+|..|+.+|+++||+
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~g------iDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYAG------LDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred CCceEeEEEecCCcCccccchhhccC------CCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 578999988642 245676544332 35789999999985 9999999999999999
Q ss_pred EEEEEeCCCCCceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhh
Q 018010 116 AILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS 166 (362)
Q Consensus 116 avII~dn~~~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~ 166 (362)
|||||++..+.. +.++ ...-...+ ..+.|+....+.|..++.
T Consensus 92 aVIv~~d~~~~~-----~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~ 133 (151)
T cd04822 92 AVIVVNGPNSHS-----GDAD---RLPRFGGT-APQRVDIAAADPWFTAAE 133 (151)
T ss_pred EEEEEeCCcccC-----cccc---cccccCcc-ceEEechHHHHHHhhhhh
Confidence 999999865431 1110 00000111 177888888888887643
No 26
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.19 E-value=6e-06 Score=71.97 Aligned_cols=70 Identities=19% Similarity=0.109 Sum_probs=52.4
Q ss_pred eccCCCCCCCCceeEEEeccCC--CccCCCCCCCCCCccCCCCCCCCeEEEEecCCC------------------CHHHH
Q 018010 46 IGNFGVPQYGGTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDC------------------YFTLK 105 (362)
Q Consensus 46 ~a~FG~~~yg~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~C------------------sF~~K 105 (362)
+.+|+.+ ..+.+.+|+... ...+|.-.++.+ -+++|+||||.||.| +|..|
T Consensus 11 ~~~~~~~---~~~~aelVfvGyGi~a~~~~~dDYag------~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K 81 (142)
T cd04814 11 MLNVDAV---AIKDAPLVFVGYGIKAPELSWDDYAG------LDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYK 81 (142)
T ss_pred ccCCCCc---cccceeeEEecCCcCCCCCChhhcCC------CCCCCcEEEEEcCCCCcccccccccccccccccCHHHH
Confidence 4445533 457888887642 234666544432 367899999999999 79999
Q ss_pred HHHHHhcCCcEEEEEeCCC
Q 018010 106 AWNAQKGGAAAILVADDKT 124 (362)
Q Consensus 106 v~nAq~aGA~avII~dn~~ 124 (362)
+.+|+++||+||||+++.+
T Consensus 82 ~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 82 YEEAARHGAAGVLIVHELA 100 (142)
T ss_pred HHHHHHCCCcEEEEEeCCC
Confidence 9999999999999999864
No 27
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.07 E-value=1.2e-05 Score=69.69 Aligned_cols=63 Identities=16% Similarity=0.051 Sum_probs=49.3
Q ss_pred CceeEEEeccCC--CccCCCCCCCCCCccCCCCCCCCeEEEEecCCCC------------HHHHHHHHHhcCCcEEEEEe
Q 018010 56 GTLIGTVVYPKA--NQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCY------------FTLKAWNAQKGGAAAILVAD 121 (362)
Q Consensus 56 ~~l~G~lv~~~~--~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~Cs------------F~~Kv~nAq~aGA~avII~d 121 (362)
+.++|.+|+... ...+|..-++.+ -+++|+||||.||.|. +..|+++|+++||+||||++
T Consensus 20 g~v~gelVfvGyG~~~~~~~~~Dy~~------iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 20 ASVEAPLVFVGYGLVAPELGHDDYAG------LDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCceEeEEEecCCcCccCcCHhhccC------CCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 578899988642 235666544322 3578999999999995 88999999999999999998
Q ss_pred CCC
Q 018010 122 DKT 124 (362)
Q Consensus 122 n~~ 124 (362)
+..
T Consensus 94 d~~ 96 (137)
T cd04820 94 TPR 96 (137)
T ss_pred CCc
Confidence 754
No 28
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.99 E-value=1.8e-05 Score=69.37 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=67.2
Q ss_pred CCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC--------
Q 018010 55 GGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP-------- 126 (362)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~-------- 126 (362)
.++++|.+||.- .|=.. +.. .+...-+++|+|+|++.|.-++..|++|||++||.|||||.|..+.
T Consensus 12 sG~Vtg~~VYvN---yG~~e-Df~--~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~ 85 (153)
T cd02131 12 KGTLQAEVVDVQ---YGSVE-DLR--RIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWH 85 (153)
T ss_pred CCceEEEEEEec---CCCHH-HHH--HHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCcc
Confidence 358999999853 22111 000 0111124689999999999999999999999999999999875221
Q ss_pred -ce--ecCCCCcc-c----c--cc---cccCCccceEEEEehHhHHHHHHHhh
Q 018010 127 -LI--TMDTPEEE-N----A--DA---EYLQNITIPSALISKSLGDSIKKSLS 166 (362)
Q Consensus 127 -l~--tM~~p~~~-~----~--~~---~~~~~i~IPsv~Isk~~G~~L~~~l~ 166 (362)
.. .+..++|- | + +. ....--+||+.=||..++..|+++-.
T Consensus 86 ~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 86 QAFMVSLNPGGDPSTPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred ceEEEecCCCCCCCCCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCc
Confidence 00 11101210 0 0 00 01123579999999999999887654
No 29
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=95.04 E-value=0.14 Score=55.39 Aligned_cols=186 Identities=18% Similarity=0.124 Sum_probs=109.7
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCC----C---------------ce----ec--CCCCcc-----c
Q 018010 88 GLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTE----P---------------LI----TM--DTPEEE-----N 137 (362)
Q Consensus 88 ~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~----~---------------l~----tM--~~p~~~-----~ 137 (362)
.+++|+|++-|.-++..|+.||+.+||.|||+|.+... . ++ .+ ...++- +
T Consensus 183 ~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~d~~~~~~~~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~p 262 (702)
T KOG2195|consen 183 LSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPYDYGSDEVLEVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYP 262 (702)
T ss_pred ccCceEEEEccccchhhhHhhHHHhhcCcEEEeeccccccccccccccCcccccCCccceecceecccCCCCCCCCCCcc
Confidence 57999999999999999999999999999999975421 0 00 00 111110 0
Q ss_pred c---------cccccC-CccceEEEEehHhHHHHHHHhhCCCeEEEEEEeccCCCCCCCceEEEEEecCCCCCCCcchhh
Q 018010 138 A---------DAEYLQ-NITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNSNDECGPKCESQ 207 (362)
Q Consensus 138 ~---------~~~~~~-~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~~~~~~p~pd~~Ve~~~w~~s~d~c~~~~~~~ 207 (362)
+ +..... -..||+.=|+..+.+.|...+..+-... + ...+.|.++..+.-.+.
T Consensus 263 a~~~~~~~~~~~~~~~~~P~Ip~~Pis~~~ae~l~~~~~g~~~~~----~-------~~~~~~~~gpg~~~~~~------ 325 (702)
T KOG2195|consen 263 AVDIYSRHSPDAKFSGGLPKIPSLPISAEDAEILLRLLGGGVKPD----G-------LLGVSYRVGPGSTGDKD------ 325 (702)
T ss_pred CccccccCChhhhhcCCCCCCCCcCccchhHHHHHHHhCCCcccc----c-------ccCcccccccccccccc------
Confidence 0 001111 2389999999977777777765442222 2 34566777666644321
Q ss_pred HHHHHHHHHHHHHHhhcCceeEeeeEEeecCchhhhhhhccccccccCCcccCCCCCCCCCCCCCchhhHHHHHHHhhhh
Q 018010 208 IDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFF 287 (362)
Q Consensus 208 ~~fi~~~~~~~~~l~~~~~~~ftphy~~~~c~~~~~~~~~~~~~Ci~~GrYCa~dp~~~~~~~~~G~dvv~E~lRqlCi~ 287 (362)
+ .+.. +...+++.+.+--+-+... ..++-|-.|.|-++=--+ -.+..+|+-+++|..|++-.+
T Consensus 326 --~---------~~~~-~~~~~~ki~NIig~I~Gs~----epD~~ViigahrDSw~~G-a~dp~sGta~Ll~i~~~~~~~ 388 (702)
T KOG2195|consen 326 --L---------VVVQ-NTREETKIQNIIGKIEGSE----EPDRYVIIGAHRDSWTFG-AIDPNSGTALLLEIARALSKL 388 (702)
T ss_pred --c---------eecc-ceeeeeeeeeEEEEEecCc----CCCeEEEEeccccccccC-CcCCCccHHHHHHHHHHHHHH
Confidence 1 0000 2345666666655443322 234455555553332222 123457999999999999998
Q ss_pred hhhccC---CCCcchhhhHHHHhh
Q 018010 288 KVANES---RKPWLWWDYVTDFAI 308 (362)
Q Consensus 288 ~~~~~~---~~~~~WW~Y~~~f~~ 308 (362)
+...-. ...|.||+ ..+|+-
T Consensus 389 ~k~gwrP~RtI~F~sWd-AeEfGl 411 (702)
T KOG2195|consen 389 KKRGWRPRRTILFASWD-AEEFGL 411 (702)
T ss_pred HHcCCCccceEEEEEcc-chhccc
Confidence 776531 24578997 455554
No 30
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.78 E-value=0.089 Score=46.71 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=30.9
Q ss_pred CCCCCeEEEEecCCCCH-------------------HHHHHHHHhcCCcEEEEEeCCC
Q 018010 86 PGGLPTFLLVDRGDCYF-------------------TLKAWNAQKGGAAAILVADDKT 124 (362)
Q Consensus 86 ~~~~~~IvLV~RG~CsF-------------------~~Kv~nAq~aGA~avII~dn~~ 124 (362)
-+++||||||.+|+=.| ..|...|.++||+|||++++..
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 45778888888776433 3599999999999999997653
No 31
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=51.18 E-value=56 Score=32.98 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=56.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCcee-cCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCC
Q 018010 90 PTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLIT-MDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGG 168 (362)
Q Consensus 90 ~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l~t-M~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g 168 (362)
..+.++.|+...+..+..++..+|+.+.+.++........ +..-.. ........+|++.+.+..|..+......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (435)
T COG2234 104 LPAAFISRGNADLVETAPNAVEAGAAAFILYASVAAENFPKLGLIGT----GRALYLAEIPAVGVSKLVGNRLIFYKQAG 179 (435)
T ss_pred cccccccccccchhhcccchhhcccchheeecccccccccccccccc----cccccccccccccccccchhHHhhhhhcC
Confidence 4566778888999999999999999999999876543221 110010 01112468999999999999988888777
Q ss_pred CeEEEEEE
Q 018010 169 EMVNMNLD 176 (362)
Q Consensus 169 ~~V~v~l~ 176 (362)
....+...
T Consensus 180 ~~~~~~~~ 187 (435)
T COG2234 180 GGLTSKNV 187 (435)
T ss_pred cceEEEEE
Confidence 54444433
No 32
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=30.92 E-value=3.7e+02 Score=27.54 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=45.3
Q ss_pred CCCeEEEEecCCCCHHHHH--HHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCccceEEEEehHhHHHHH
Q 018010 88 GLPTFLLVDRGDCYFTLKA--WNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIK 162 (362)
Q Consensus 88 ~~~~IvLV~RG~CsF~~Kv--~nAq~aGA~avII~dn~~~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~ 162 (362)
..|.+++..|-+--...|. ..|..+||.|+|+-.+.+..+++- +|-.. ........||++.+...++..+.
T Consensus 88 ~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~---Gd~gy-~~~s~PtPIPva~v~en~~~y~~ 160 (486)
T COG4882 88 AGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTG---GDWGY-SVSSSPTPIPVAVVPENYSRYAE 160 (486)
T ss_pred CCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEec---ccccc-cCCCCCCCcceEEeccCcchhhc
Confidence 4578888877655555554 378899999999987655444442 22100 00123467999999888886655
No 33
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=30.54 E-value=3.5e+02 Score=23.29 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=46.5
Q ss_pred CCCCeEEEEe--cCCCCHHHHHHHHHhcC-CcEEEEEeCCCCCceecCCCCcccccccccCCccceEEEEehHhHHHHHH
Q 018010 87 GGLPTFLLVD--RGDCYFTLKAWNAQKGG-AAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKK 163 (362)
Q Consensus 87 ~~~~~IvLV~--RG~CsF~~Kv~nAq~aG-A~avII~dn~~~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~ 163 (362)
.+.|+|+++. ||.|.=.-=.+.+.+.| |=++|| +.+.|++++.++- --.||.+-... .+.+
T Consensus 48 ~l~Gkilv~P~grGStvGSyVl~~l~~~G~AP~aIv-~~e~EpIla~Gai-----------~a~iPlv~~~~----e~~~ 111 (131)
T COG1786 48 SLTGKILVFPGGRGSTVGSYVLYELAKNGRAPAAIV-NEEAEPILAVGAI-----------LAGIPLVDGVD----EFFE 111 (131)
T ss_pred cccceEEEeeCCCCccccHHHHHHHHHcCCCchhhh-hcCCcceeeehhh-----------hcCCceEeccH----HHHH
Confidence 4679999987 67887777778888888 445555 4556777664321 12577664432 5667
Q ss_pred HhhCCCeEEEE
Q 018010 164 SLSGGEMVNMN 174 (362)
Q Consensus 164 ~l~~g~~V~v~ 174 (362)
.++.+..|.+.
T Consensus 112 ~l~~g~~v~v~ 122 (131)
T COG1786 112 ELKTGDRVRVN 122 (131)
T ss_pred HhccCCEEEEc
Confidence 77778666554
No 34
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.06 E-value=14 Score=36.18 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=30.9
Q ss_pred EEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC
Q 018010 92 FLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP 126 (362)
Q Consensus 92 IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~ 126 (362)
+.++.||+|+..+|.+-+++.|-+|||..++....
T Consensus 149 ~~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~~ 183 (374)
T COG5540 149 DRCNRRGNETEEDPTRERRRTRFKGVIRGSERNGE 183 (374)
T ss_pred HHHHHccCccccCccccchhccccceeeccccCCc
Confidence 45678999999999999999999999999987543
No 35
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=27.16 E-value=63 Score=31.50 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHhcCCcEEEEEeCCCC------CceecCCCCcccccccccCCccceEEEEehHhH-HHHHHHhhCCCe
Q 018010 100 CYFTLKAWNAQKGGAAAILVADDKTE------PLITMDTPEEENADAEYLQNITIPSALISKSLG-DSIKKSLSGGEM 170 (362)
Q Consensus 100 CsF~~Kv~nAq~aGA~avII~dn~~~------~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G-~~L~~~l~~g~~ 170 (362)
-+-.++++-|..|||.+|++-+..+. ..--|++|++-. .--..++||++.+-|..- .........|-.
T Consensus 15 v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~---~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvD 89 (283)
T cd04727 15 VTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIK---EIMDAVSIPVMAKVRIGHFVEAQILEALGVD 89 (283)
T ss_pred eCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHH---HHHHhCCCCeEEeeehhHHHHHHHHHHcCCC
Confidence 45578899999999999999776543 234566665421 112357999999888763 233333444543
No 36
>cd07027 RNAP_RPB11_like RPB11 subunit of RNA polymerase. The eukaryotic RPB11 subunit of RNA polymerase (RNAP), as well as its archaeal (L subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The assembly of the two largest eukaryotic RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of RPB3/RPB11 heterodimer subunits. This is also true for the archaeal (D/
Probab=25.76 E-value=3.3e+02 Score=21.36 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=29.1
Q ss_pred HhHHHHHHHhhCCCeEEEEEEeccCCCCCC-CceEEEEEecC
Q 018010 156 SLGDSIKKSLSGGEMVNMNLDWTEALPHPD-ERVEYEFWTNS 196 (362)
Q Consensus 156 ~~G~~L~~~l~~g~~V~v~l~~~~~~p~pd-~~Ve~~~w~~s 196 (362)
.-|..|+..|.+.+.|...-+ .+|||- ..+...+-|+.
T Consensus 21 TLgNlLr~~L~~~~~V~fAgY---~vpHPl~~~~~lrI~T~~ 59 (83)
T cd07027 21 TLGNLLREELLKDDQVDFARY---YIKHPVIDKIQIRIQTKS 59 (83)
T ss_pred hHHHHHHHHHhcCCCeeEEEE---ecCCCCCCccEEEEEECC
Confidence 459999999999888887776 589994 56666665554
No 37
>cd07029 RNAP_I_III_AC19 AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC19 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC19 subunit is the equivalent of the RPB11 subunit of RNAP II. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC19 to RPB11 suggests a similar function. The AC19 subunit is likely to ass
Probab=25.56 E-value=3e+02 Score=21.71 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=29.3
Q ss_pred HhHHHHHHHhhCCCeEEEEEEeccCCCCCC-CceEEEEEecC
Q 018010 156 SLGDSIKKSLSGGEMVNMNLDWTEALPHPD-ERVEYEFWTNS 196 (362)
Q Consensus 156 ~~G~~L~~~l~~g~~V~v~l~~~~~~p~pd-~~Ve~~~w~~s 196 (362)
.-|..|+..|.+...|...-+ .+|||- ..+...+=|+.
T Consensus 21 TLgNlLr~~L~~~p~V~fagY---~vpHPl~~~~~lriqT~~ 59 (85)
T cd07029 21 TLGNSLRYVIMKNPEVEFCGY---SIPHPSENKINLRIQTKG 59 (85)
T ss_pred chHHHHHHHHhhCCCceEEee---cccCCCCCccEEEEEeCC
Confidence 459999999999888887777 589994 46666665554
No 38
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=24.55 E-value=73 Score=31.12 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHhcCCcEEEEEeCCC------CCceecCCCCcccccccccCCccceEEEEehHh
Q 018010 100 CYFTLKAWNAQKGGAAAILVADDKT------EPLITMDTPEEENADAEYLQNITIPSALISKSL 157 (362)
Q Consensus 100 CsF~~Kv~nAq~aGA~avII~dn~~------~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~ 157 (362)
-+-.++++-|+.|||.||+.-...+ +..-.|++|.+-. .--..++||++.+-|..
T Consensus 17 v~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~---~I~~~V~iPVig~~kig 77 (287)
T TIGR00343 17 VVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIK---EIMDAVSIPVMAKVRIG 77 (287)
T ss_pred eCCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHH---HHHHhCCCCEEEEeecc
Confidence 3557889999999999999965544 3345677666521 11235799999887754
No 39
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.64 E-value=46 Score=27.04 Aligned_cols=13 Identities=23% Similarity=0.199 Sum_probs=6.0
Q ss_pred HHHHhhcccceeE
Q 018010 11 ILFLLCGLSFGRF 23 (362)
Q Consensus 11 ~~~~~~~~a~~~f 23 (362)
++|++++.+++|-
T Consensus 15 ~lLlisSevaa~~ 27 (95)
T PF07172_consen 15 ALLLISSEVAARE 27 (95)
T ss_pred HHHHHHhhhhhHH
Confidence 3444455455443
No 40
>PRK11372 lysozyme inhibitor; Provisional
Probab=22.49 E-value=1.1e+02 Score=25.29 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=9.6
Q ss_pred CcchhhHHHHHHHHh
Q 018010 1 MREKLGFLVGILFLL 15 (362)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (362)
|+++.+|+++++++|
T Consensus 1 ~~mk~ll~~~~~~lL 15 (109)
T PRK11372 1 MSMKKLLIICLPVLL 15 (109)
T ss_pred CchHHHHHHHHHHHH
Confidence 777776666555555
No 41
>PRK01146 DNA-directed RNA polymerase subunit L; Provisional
Probab=22.07 E-value=4e+02 Score=20.99 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=28.1
Q ss_pred HhHHHHHHHhhCCCeEEEEEEeccCCCCC-CCceEEEEEec
Q 018010 156 SLGDSIKKSLSGGEMVNMNLDWTEALPHP-DERVEYEFWTN 195 (362)
Q Consensus 156 ~~G~~L~~~l~~g~~V~v~l~~~~~~p~p-d~~Ve~~~w~~ 195 (362)
.-|..|+..|.+.+.|...-+ .+||| .......+=|+
T Consensus 23 TlgNlLr~~L~~~~~V~fAgY---~vpHPl~~~~~lrIqt~ 60 (85)
T PRK01146 23 TLMNLLKEELLEDPGVEAASY---DIDHPLISNPVLKIKTD 60 (85)
T ss_pred hHHHHHHHHHhcCCCeeEEEe---ecCCCCCCccEEEEEEC
Confidence 459999999999888887666 68999 45566666555
No 42
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=20.67 E-value=1e+02 Score=22.64 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=10.2
Q ss_pred HhhcccceeEEEee
Q 018010 14 LLCGLSFGRFVVEK 27 (362)
Q Consensus 14 ~~~~~a~~~fvve~ 27 (362)
++...|.|++||-.
T Consensus 13 ~~~~~a~AQWvV~D 26 (55)
T PF13605_consen 13 LLAGPARAQWVVTD 26 (55)
T ss_pred hcCCcceeEEEEeC
Confidence 44678999999543
No 43
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=20.50 E-value=2.9e+02 Score=21.10 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=24.3
Q ss_pred cCCccceEEEEehHhHHHHHHHhhCCCeEEEEEE
Q 018010 143 LQNITIPSALISKSLGDSIKKSLSGGEMVNMNLD 176 (362)
Q Consensus 143 ~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~ 176 (362)
-.++.+| ...-|+.|++++.+|+.+.+++-
T Consensus 26 k~DlklP----~~elg~~I~~~f~~gk~~~vtV~ 55 (69)
T cd04468 26 REDLKLP----EGELGKEIREKFDEGKDVLVTVL 55 (69)
T ss_pred ccCCcCC----cHHHHHHHHHHHhCCCcEEEEEE
Confidence 4578888 37889999999999988777764
No 44
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=20.08 E-value=1.8e+02 Score=22.62 Aligned_cols=72 Identities=21% Similarity=0.202 Sum_probs=39.5
Q ss_pred CeEEEEecC-----CCCHHHHHHHHH-hcCCcEEEEEeCCCCCceecCCCCcccccccccCCccceEEEEehH---hHHH
Q 018010 90 PTFLLVDRG-----DCYFTLKAWNAQ-KGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKS---LGDS 160 (362)
Q Consensus 90 ~~IvLV~RG-----~CsF~~Kv~nAq-~aGA~avII~dn~~~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~---~G~~ 160 (362)
..|++...| .|.|-.|++..- ..|...-.+ |-..++-+ +. . -......-++|.++|... ..+.
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~i-dv~~~~~~-~~---~---l~~~~g~~tvP~vfi~g~~iGG~~~ 79 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTF-DILEDEEV-RQ---G---LKEYSNWPTFPQLYVNGELVGGCDI 79 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEE-EcCCCHHH-HH---H---HHHHhCCCCCCEEEECCEEEeCHHH
Confidence 456666665 899999998655 456543333 32111100 00 0 000112358999999875 4566
Q ss_pred HHHHhhCCC
Q 018010 161 IKKSLSGGE 169 (362)
Q Consensus 161 L~~~l~~g~ 169 (362)
|.++.++|+
T Consensus 80 l~~l~~~g~ 88 (90)
T cd03028 80 VKEMHESGE 88 (90)
T ss_pred HHHHHHcCC
Confidence 666666553
Done!