Query 018010
Match_columns 362
No_of_seqs 289 out of 1269
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 3.2E-23 1.1E-27 187.3 19.0 127 42-178 54-186 (194)
2 3iib_A Peptidase M28; YP_92679 99.2 1.1E-10 3.8E-15 117.7 16.2 181 55-301 103-301 (444)
3 2ek8_A Aminopeptidase; metallo 99.1 1E-09 3.5E-14 109.6 15.3 101 56-177 91-195 (421)
4 3fed_A Glutamate carboxypeptid 99.0 7.1E-10 2.4E-14 117.7 7.9 106 56-167 125-268 (707)
5 3kas_A Transferrin receptor pr 98.8 4.6E-09 1.6E-13 110.3 6.8 103 56-166 106-230 (640)
6 3i6s_A Subtilisin-like proteas 98.1 4.8E-06 1.6E-10 87.7 7.8 89 68-177 266-356 (649)
7 1y9z_A Alkaline serine proteas 98.0 1.9E-05 6.4E-10 79.2 9.3 77 86-174 270-355 (441)
8 1xf1_A C5A peptidase, SCP; hyd 97.8 5.3E-05 1.8E-09 82.8 10.1 65 87-163 278-343 (926)
9 3vta_A Cucumisin; subtilisin-l 89.1 0.6 2.1E-05 48.5 6.9 62 87-167 279-340 (621)
10 3gha_A Disulfide bond formatio 62.5 66 0.0023 27.6 10.7 115 184-344 27-144 (202)
11 4b2v_A S64; toxin, ICK; NMR {S 60.2 3.7 0.00013 24.9 1.3 15 250-265 1-15 (32)
12 3bci_A Disulfide bond protein 55.9 87 0.003 25.9 10.7 58 281-343 66-129 (186)
13 4f87_A Plycb; lysin, bacteriop 42.7 14 0.00048 26.2 2.2 20 147-166 52-71 (72)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.91 E-value=3.2e-23 Score=187.33 Aligned_cols=127 Identities=21% Similarity=0.303 Sum_probs=104.0
Q ss_pred ecceeccCCCCCCCCceeEEEeccC--CCccCCCCCCCCCCccC-CCCCCCCeEEEEecCC-CCHHHHHHHHHhcCCcEE
Q 018010 42 YECAIGNFGVPQYGGTLIGTVVYPK--ANQKACKGFDEVDLSFK-SRPGGLPTFLLVDRGD-CYFTLKAWNAQKGGAAAI 117 (362)
Q Consensus 42 ~~~~~a~FG~~~yg~~l~G~lv~~~--~~~~gC~~~~~~~~~~~-~~~~~~~~IvLV~RG~-CsF~~Kv~nAq~aGA~av 117 (362)
.....|+||...+.+.++|.|+++. ++.+||++.+++..+.. .....+++|+||+||+ |+|.+|++|||++||+||
T Consensus 54 ~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~av 133 (194)
T 3icu_A 54 ELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGA 133 (194)
T ss_dssp EEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEE
T ss_pred ecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEE
Confidence 5567999999999999999999886 47899999876431110 0112468999999999 999999999999999999
Q ss_pred EEEeCCC--CCceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEEEec
Q 018010 118 LVADDKT--EPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWT 178 (362)
Q Consensus 118 II~dn~~--~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~~~ 178 (362)
||||+.. +.+++|..++ ..+||++||++++|+.|+++|++|.+|+++|...
T Consensus 134 IIyNn~~~g~~~~~m~~~~----------~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg 186 (194)
T 3icu_A 134 VIFNFPGTRNEVIPMSHPG----------AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVG 186 (194)
T ss_dssp EEECCTTCTTCCCCCCCTT----------CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEeCCCCCCceeeecCCC----------CCceeEEEECHHHHHHHHHHHHCCCeEEEEEECC
Confidence 9999852 3456886432 3579999999999999999999999999988873
No 2
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.24 E-value=1.1e-10 Score=117.68 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=112.0
Q ss_pred CCceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCC---------HHHHH----HHHHhcCCcEEEEEe
Q 018010 55 GGTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCY---------FTLKA----WNAQKGGAAAILVAD 121 (362)
Q Consensus 55 g~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~Cs---------F~~Kv----~nAq~aGA~avII~d 121 (362)
.+.++|.|++.. +...|.... ..+++|+||||+||.|. |..|. .+|+++||+||||++
T Consensus 103 ~~~vta~lV~v~-~~~~~~~~~--------~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~ 173 (444)
T 3iib_A 103 AQGLSATIVRFD-TLQDLQNAE--------AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRS 173 (444)
T ss_dssp TTCEEEEEEEES-SHHHHHTSC--------TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCeEEEEEecC-CHHHHhhcc--------ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEc
Confidence 467999998854 233444321 13578999999999996 77774 579999999999998
Q ss_pred CCCCCc---e--ecCCCCcccccccccCCccceEEEEehHhHHHHHHHhhCCCeEEEEEEeccCCCCCCCceEEEEEecC
Q 018010 122 DKTEPL---I--TMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLSGGEMVNMNLDWTEALPHPDERVEYEFWTNS 196 (362)
Q Consensus 122 n~~~~l---~--tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~~~~~~p~pd~~Ve~~~w~~s 196 (362)
+..... . +|..+ .....||++.|+.++|+.|+++++.|..+.+++......- ..+..+.++...
T Consensus 174 ~~~~~~~~~~tg~~~~~---------~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~l~~~~~~~--~~~~~~Nvi~~~ 242 (444)
T 3iib_A 174 IGTDHDRMAHTGMMRYE---------EGVTAIPAAAISNPDADLINAMLKRDKEVVISLELGSERR--GETTSYNVIAEV 242 (444)
T ss_dssp SCSCCSSCCCCCBCCCC---------TTSCCCCEEEECHHHHHHHHHHHTTTCCCEEEEEEEEEEE--EEEEEEEEEEEE
T ss_pred cCCcccccccCCccccC---------CCCCCCCeEEecHHHHHHHHHHHhCCCCeEEEEEEeeeEc--CCceeEEEEEEE
Confidence 754321 1 12111 1246899999999999999999998887777776531110 011223333322
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHhhcCceeEeeeEEeecCchhhhhhhccccccccCCcccCCCCCCCCCCCCCchhh
Q 018010 197 NDECGPKCESQIDFVKNFKGAAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPDPEQDFSRGYDGKDV 276 (362)
Q Consensus 197 ~d~c~~~~~~~~~fi~~~~~~~~~l~~~~~~~ftphy~~~~c~~~~~~~~~~~~~Ci~~GrYCa~dp~~~~~~~~~G~dv 276 (362)
.-. + .....+.+.-||-+|.- | |. .+|+.+|.-+
T Consensus 243 ~g~-------------~--------~~~~~i~~~aH~Ds~~~-----------------g------~G--a~D~~sG~a~ 276 (444)
T 3iib_A 243 KGS-------------T--------KADEIVLIGAHLDSWDE-----------------G------TG--AIDDGAGVAI 276 (444)
T ss_dssp CCS-------------T--------EEEEEEEEEEECCCCSS-----------------S------CC--TTTTHHHHHH
T ss_pred eCC-------------C--------CCCCEEEEEeecccCCC-----------------C------CC--CccchHHHHH
Confidence 110 0 00123555556554420 0 22 2356799999
Q ss_pred HHHHHHHhhhhhhhccCCCCcchhh
Q 018010 277 VVQNLRQACFFKVANESRKPWLWWD 301 (362)
Q Consensus 277 v~E~lRqlCi~~~~~~~~~~~~WW~ 301 (362)
++|.+|.|--..........+.||+
T Consensus 277 ~le~a~~l~~~~~~~~~~i~f~~~~ 301 (444)
T 3iib_A 277 VTAAAKHILDLPQKPERTIRVVLYA 301 (444)
T ss_dssp HHHHHHHHHTSSSCCSEEEEEEEES
T ss_pred HHHHHHHHHhcCCCCCCeEEEEEEC
Confidence 9999999875432222235667776
No 3
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=99.10 E-value=1e-09 Score=109.59 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=74.0
Q ss_pred CceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCce-ecCCCC
Q 018010 56 GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLI-TMDTPE 134 (362)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l~-tM~~p~ 134 (362)
+.++|.|++.. .| .+.+ |. .-+++|+||||+||+|+|..|+.+|+++||+||||+++.+.++. +|..
T Consensus 91 g~v~a~lv~~~---~G-~~~D-----~~-~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~-- 158 (421)
T 2ek8_A 91 SDVTAELVYVG---LG-TTAD-----VA-GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGG-- 158 (421)
T ss_dssp EEEEEEEEECT---TC-CTTT-----TT-TSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSS--
T ss_pred CCcceEEEECC---CC-Chhh-----cC-CCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCC--
Confidence 47889987742 22 2222 21 12578999999999999999999999999999999998654432 2211
Q ss_pred cccccccccCCccceEEEEehHhHHHHHHHh---hCCCeEEEEEEe
Q 018010 135 EENADAEYLQNITIPSALISKSLGDSIKKSL---SGGEMVNMNLDW 177 (362)
Q Consensus 135 ~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l---~~g~~V~v~l~~ 177 (362)
.....||++.|+.++++.|++.+ +.| .+.+++..
T Consensus 159 --------~~~~~IP~~~Is~~~a~~L~~~l~~~~~g-~~~v~l~~ 195 (421)
T 2ek8_A 159 --------SDASFVAAVGITKQEGDALAANLRAGEKI-TATVKVAG 195 (421)
T ss_dssp --------CCTTCCEEEEECHHHHHHHHHHHHTTCCC-EEEEEEES
T ss_pred --------CCCCCccEEEeCHHHHHHHHHHhhhhccC-Cccccccc
Confidence 12468999999999999999999 444 45566654
No 4
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.96 E-value=7.1e-10 Score=117.65 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=69.7
Q ss_pred CceeEEEeccCCCccCCCCCCCCCCccCC--CCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCC--------
Q 018010 56 GTLIGTVVYPKANQKACKGFDEVDLSFKS--RPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTE-------- 125 (362)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~--~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~-------- 125 (362)
++++|.+||. ..||.. +.. .+.. ..+++|+||||+||.|+|..|+.||+++||+|||||++..+
T Consensus 125 G~v~g~lV~v---~~G~~~-Df~--~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~ 198 (707)
T 3fed_A 125 GMPEGDLVYV---NYARTE-DFF--KLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQP 198 (707)
T ss_dssp BCCEECEEEC---TTCCHH-HHH--HHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCB
T ss_pred CceEEEEEEe---cCCchh-hHH--HHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhcccccccc
Confidence 5789999885 356632 110 0000 13578999999999999999999999999999999986310
Q ss_pred ---------------CceecCCCCcc-c----cc--------ccccCCccceEEEEehHhHHHHHHHhhC
Q 018010 126 ---------------PLITMDTPEEE-N----AD--------AEYLQNITIPSALISKSLGDSIKKSLSG 167 (362)
Q Consensus 126 ---------------~l~tM~~p~~~-~----~~--------~~~~~~i~IPsv~Isk~~G~~L~~~l~~ 167 (362)
.+..+..|+|- + +. ........||++-|+..+|+.|++.|..
T Consensus 199 yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 199 YPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp TTTSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CCCCccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 00000111210 0 00 0001236899999999999999999864
No 5
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.79 E-value=4.6e-09 Score=110.32 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=68.1
Q ss_pred CceeEEEeccCCCccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCC-ce------
Q 018010 56 GTLIGTVVYPKANQKACKGFDEVDLSFKSRPGGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEP-LI------ 128 (362)
Q Consensus 56 ~~l~G~lv~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~-l~------ 128 (362)
+.++|.+|+. ..||.. +.. .++ -+++|+||||+||.|+|..|+.+|+++||+|||||++..+. ..
T Consensus 106 g~v~g~lV~v---g~G~~~-D~~--~l~--vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~ 177 (640)
T 3kas_A 106 ATVTGKLVHA---NFGTKK-DFE--DLY--TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSF 177 (640)
T ss_dssp EEEEECEEEC---TTCCHH-HHH--TCS--SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCC
T ss_pred CceEEEEEEe---cCCChh-hHH--Hhh--cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEecccccccccccccc
Confidence 4688988885 356532 111 111 25789999999999999999999999999999999976321 10
Q ss_pred --ec-CCCCcc-c----cc-------ccccCCccceEEEEehHhHHHHHHHhh
Q 018010 129 --TM-DTPEEE-N----AD-------AEYLQNITIPSALISKSLGDSIKKSLS 166 (362)
Q Consensus 129 --tM-~~p~~~-~----~~-------~~~~~~i~IPsv~Isk~~G~~L~~~l~ 166 (362)
+. ..+++- + +. ........||++.|+.++|+.|.+.+.
T Consensus 178 ~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 178 FGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CEECCSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred ccccccCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 00 001110 0 00 000113479999999999999998774
No 6
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.08 E-value=4.8e-06 Score=87.69 Aligned_cols=89 Identities=11% Similarity=0.162 Sum_probs=69.0
Q ss_pred CccCCCCCCCCCCccCCCCCC--CCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCC
Q 018010 68 NQKACKGFDEVDLSFKSRPGG--LPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQN 145 (362)
Q Consensus 68 ~~~gC~~~~~~~~~~~~~~~~--~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l~tM~~p~~~~~~~~~~~~ 145 (362)
....|.+.... ...+ +++|+|++||.|.|.+|..+++++||.++|++|+. +.+ + ...
T Consensus 266 ~~~~C~~~~l~------~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~-~~~--~------------~~~ 324 (649)
T 3i6s_A 266 TLSDCSSEELL------SQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDP-GVF--R------------SAT 324 (649)
T ss_dssp TTTTCCCHHHH------TTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCG-GGG--G------------CCC
T ss_pred ccccccccccc------ccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCc-ccc--c------------ccc
Confidence 45678875321 1223 79999999999999999999999999999999875 211 1 113
Q ss_pred ccceEEEEehHhHHHHHHHhhCCCeEEEEEEe
Q 018010 146 ITIPSALISKSLGDSIKKSLSGGEMVNMNLDW 177 (362)
Q Consensus 146 i~IPsv~Isk~~G~~L~~~l~~g~~V~v~l~~ 177 (362)
..||+++|+.++|+.|++++.++....+++.+
T Consensus 325 ~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~ 356 (649)
T 3i6s_A 325 FPNPGVVVNKKEGKQVINYVKNSVTPTATITF 356 (649)
T ss_dssp CCSCEEEECHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CcCCEEEEcHHHHHHHHHHHhcCCCceEEEee
Confidence 57899999999999999999987755555554
No 7
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.97 E-value=1.9e-05 Score=79.18 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=60.2
Q ss_pred CCCCCeEEEEecCCC-----CHHHHHHHHHhcCCcEEEEEeCCCCCc----eecCCCCcccccccccCCccceEEEEehH
Q 018010 86 PGGLPTFLLVDRGDC-----YFTLKAWNAQKGGAAAILVADDKTEPL----ITMDTPEEENADAEYLQNITIPSALISKS 156 (362)
Q Consensus 86 ~~~~~~IvLV~RG~C-----sF~~Kv~nAq~aGA~avII~dn~~~~l----~tM~~p~~~~~~~~~~~~i~IPsv~Isk~ 156 (362)
..++++|+|++||.| +|..|+.+|+++||+++||++|...+- +.++ ......||+++|+++
T Consensus 270 ~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~----------~~~~~~~p~~~v~~~ 339 (441)
T 1y9z_A 270 GNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVD----------ANSDITVPSVSVDRA 339 (441)
T ss_dssp CCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEEC----------TTCCCCSCEEEECHH
T ss_pred CCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccc----------cccCccccEEEEeHH
Confidence 467899999999987 899999999999999999998864211 1121 123468999999999
Q ss_pred hHHHHHHHhhCCCeEEEE
Q 018010 157 LGDSIKKSLSGGEMVNMN 174 (362)
Q Consensus 157 ~G~~L~~~l~~g~~V~v~ 174 (362)
+|+.|++++ +..++++
T Consensus 340 ~g~~l~~~~--~~~~t~~ 355 (441)
T 1y9z_A 340 TGLALKAKL--GQSTTVS 355 (441)
T ss_dssp HHHHHHTTT--TSEEEEE
T ss_pred HHHHHHHHh--cCCcccc
Confidence 999999988 4455544
No 8
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.81 E-value=5.3e-05 Score=82.79 Aligned_cols=65 Identities=31% Similarity=0.459 Sum_probs=54.1
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCc-eecCCCCcccccccccCCccceEEEEehHhHHHHHH
Q 018010 87 GGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPL-ITMDTPEEENADAEYLQNITIPSALISKSLGDSIKK 163 (362)
Q Consensus 87 ~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l-~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~ 163 (362)
.++++|+|++||.|+|.+|+.+|+++||.++|++|+..+.. +.+ + ....||+++|++++|+.|+.
T Consensus 278 ~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~--~----------~~~~iP~~~i~~~~g~~l~~ 343 (926)
T 1xf1_A 278 DVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL--P----------NVDQMPAAFISRKDGLLLKD 343 (926)
T ss_dssp TCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC--C----------CSTTCCEEEECHHHHHHHHH
T ss_pred hcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc--C----------ccccccEEEEeHHHHHHHHh
Confidence 57899999999999999999999999999999998864422 221 1 13579999999999998884
No 9
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=89.15 E-value=0.6 Score=48.48 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=49.9
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHhcCCcEEEEEeCCCCCceecCCCCcccccccccCCccceEEEEehHhHHHHHHHhh
Q 018010 87 GGLPTFLLVDRGDCYFTLKAWNAQKGGAAAILVADDKTEPLITMDTPEEENADAEYLQNITIPSALISKSLGDSIKKSLS 166 (362)
Q Consensus 87 ~~~~~IvLV~RG~CsF~~Kv~nAq~aGA~avII~dn~~~~l~tM~~p~~~~~~~~~~~~i~IPsv~Isk~~G~~L~~~l~ 166 (362)
...++|+|.+|+ |..|..+++.+||.++|++++..+. .....+|+++|+..+|..|+.++.
T Consensus 279 ~v~gkivl~~~~---~~~~~~~~~~~Ga~gvi~~~~~~~~----------------~~~~~lP~~~v~~~~g~~i~~~~~ 339 (621)
T 3vta_A 279 LLKGKIVVCEAS---FGPHEFFKSLDGAAGVLMTSNTRDY----------------ADSYPLPSSVLDPNDLLATLRYIY 339 (621)
T ss_dssp GTTTSEEECSSC---CCHHHHHHHHTTCSEEEEECSCCSS----------------CCCCSSSEEEECHHHHHHHHHHHH
T ss_pred cccceEEEEecC---CChhHHhhhhcceeEEEEEecCCCc----------------ccccccceEEECHHHHHHHHHHHh
Confidence 467999998754 6789999999999999999875321 123578999999999999999876
Q ss_pred C
Q 018010 167 G 167 (362)
Q Consensus 167 ~ 167 (362)
.
T Consensus 340 ~ 340 (621)
T 3vta_A 340 S 340 (621)
T ss_dssp H
T ss_pred c
Confidence 5
No 10
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=62.48 E-value=66 Score=27.64 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=65.1
Q ss_pred CCCceEEEEEecCCCCCCCcchhhHHHHHHHHH-HHHHHhhcCceeEeeeEEeecCchhhhhhhccccccccCCcccCCC
Q 018010 184 PDERVEYEFWTNSNDECGPKCESQIDFVKNFKG-AAQILEQRGYTQFTPHYITWYCPEAFILSKQCKSQCINHGRYCAPD 262 (362)
Q Consensus 184 pd~~Ve~~~w~~s~d~c~~~~~~~~~fi~~~~~-~~~~l~~~~~~~ftphy~~~~c~~~~~~~~~~~~~Ci~~GrYCa~d 262 (362)
|+.+|+...|++.. |. --.+|-..+.+ +.+.+.+.|.+.|.-+...+
T Consensus 27 ~~a~vtvvef~D~~--CP----~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~-------------------------- 74 (202)
T 3gha_A 27 DDAPVTVVEFGDYK--CP----SCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMF-------------------------- 74 (202)
T ss_dssp TTCSEEEEEEECTT--CH----HHHHHHHHTHHHHHHHTTTTTSEEEEEEECCC--------------------------
T ss_pred CCCCEEEEEEECCC--Ch----hHHHHHHHhhHHHHHHhccCCeEEEEEEecCc--------------------------
Confidence 57788877777774 43 34566555433 22233223466666553321
Q ss_pred CCCCCCCCCCchhhHHHHHHHhhhhhhhccCCCCcchhhhHHHHhhhcCCCchh-hHHHHHHHHHHH-hCCChhhhcccc
Q 018010 263 PEQDFSRGYDGKDVVVQNLRQACFFKVANESRKPWLWWDYVTDFAIRCPMKEKK-YTKECAEQVIKS-LGVDLKKVDECV 340 (362)
Q Consensus 263 p~~~~~~~~~G~dvv~E~lRqlCi~~~~~~~~~~~~WW~Y~~~f~~~C~~~~~~-~~~~Cs~~v~~~-~~i~~~~v~~C~ 340 (362)
.|..+..-..--+|+++.... ++|+|....-..=...... .+.+=-.++.++ +|+|.+++++|+
T Consensus 75 ---------~~~~s~~Aa~aa~a~~~~~~~-----~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l 140 (202)
T 3gha_A 75 ---------HGKGSRLAALASEEVWKEDPD-----SFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENL 140 (202)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred ---------cchhHHHHHHHHHHHHhhCHH-----HHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 112233333334577766555 7999988644332211111 223445667778 899999999999
Q ss_pred CCCC
Q 018010 341 GDPE 344 (362)
Q Consensus 341 ~d~~ 344 (362)
.+..
T Consensus 141 ~s~~ 144 (202)
T 3gha_A 141 DKET 144 (202)
T ss_dssp HHTT
T ss_pred hChH
Confidence 7764
No 11
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=60.19 E-value=3.7 Score=24.86 Aligned_cols=15 Identities=53% Similarity=1.504 Sum_probs=12.1
Q ss_pred cccccCCcccCCCCCC
Q 018010 250 SQCINHGRYCAPDPEQ 265 (362)
Q Consensus 250 ~~Ci~~GrYCa~dp~~ 265 (362)
+.|+-+|.+| |||+-
T Consensus 1 secvenggfc-pdpek 15 (32)
T 4b2v_A 1 SECVENGGFC-PDPEK 15 (32)
T ss_dssp CCCCCTTCBC-CCTTT
T ss_pred CchhhcCCcC-CChHH
Confidence 4689999999 67875
No 12
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=55.91 E-value=87 Score=25.94 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=35.6
Q ss_pred HHHhhhhhhhccCCCCcchhhhHHHHhhhcCCC-chhhHHHHHHHHHHHhCCChhh---hcccc--CCC
Q 018010 281 LRQACFFKVANESRKPWLWWDYVTDFAIRCPMK-EKKYTKECAEQVIKSLGVDLKK---VDECV--GDP 343 (362)
Q Consensus 281 lRqlCi~~~~~~~~~~~~WW~Y~~~f~~~C~~~-~~~~~~~Cs~~v~~~~~i~~~~---v~~C~--~d~ 343 (362)
.--+|+.+...+ .+|+|....-..=... ....+.+=-.++.+.+|+|.++ +++|+ .+.
T Consensus 66 ~a~~~a~~~~~~-----~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~ 129 (186)
T 3bci_A 66 RASHAVLMYAPK-----SFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDS 129 (186)
T ss_dssp HHHHHHHHHCGG-----GHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhCHH-----HHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCH
Confidence 334566665434 6888887643321111 1113345566778889999999 99999 543
No 13
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=42.71 E-value=14 Score=26.19 Aligned_cols=20 Identities=45% Similarity=0.524 Sum_probs=18.5
Q ss_pred cceEEEEehHhHHHHHHHhh
Q 018010 147 TIPSALISKSLGDSIKKSLS 166 (362)
Q Consensus 147 ~IPsv~Isk~~G~~L~~~l~ 166 (362)
-||++-|+++|-++++++++
T Consensus 52 iipsinisksdveairkamk 71 (72)
T 4f87_A 52 IIPSINISKSDVEAIRKAMK 71 (72)
T ss_dssp TSCEEECCGGGHHHHHHHHC
T ss_pred hCccccccHhHHHHHHHHhc
Confidence 58999999999999999885
Done!