BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018011
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 171 bits (432), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 79/124 (63%), Positives = 97/124 (78%)
Query: 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY 159
R+LH + RVGDL R+I FYT+ LGMKLLR + PE KY+ AF+GYGPE VIELTYN+
Sbjct: 2 RLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNW 61
Query: 160 GVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 219
GVDKY++GT +GH ++VD+ A+ E I+ GG VTRE GPVKGG TVIAF+EDPDGYK
Sbjct: 62 GVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKI 121
Query: 220 ELLE 223
EL+E
Sbjct: 122 ELIE 125
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 83/126 (65%)
Query: 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG 290
L MLRVGDL RSI+FY + GM+LLR +NPEYKY++A +GYGPE + V+ELTYN+G
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG 62
Query: 291 VTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTV 350
V Y+ G AY IA+ D+ + E I+ GG VTRE GP+ G T I DPDG+K
Sbjct: 63 VDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIE 122
Query: 351 FVDNVD 356
++ D
Sbjct: 123 LIEEKD 128
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 82/124 (66%), Gaps = 5/124 (4%)
Query: 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYN 158
RRMLH + RVGDLDR+IKFYTE LGMK+LRK D+PE+KYT FLGYGPE S V+ELTYN
Sbjct: 7 RRMLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYN 66
Query: 159 YGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYK 218
YGV Y +GH I V+DV + V ++ + E + +AF+ DPDGY
Sbjct: 67 YGVTSYKHDEAYGHIAIGVEDVKELVADMRKHDVPIDYED-----ESGFMAFVVDPDGYY 121
Query: 219 FELL 222
ELL
Sbjct: 122 IELL 125
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 57/80 (71%)
Query: 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG 290
+ M+RVGDLDRSI FY + GM++LRK D PE KYT+ +GYGPE + VLELTYNYG
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSSTVLELTYNYG 68
Query: 291 VTDYDKGNAYAQIAIGTDDV 310
VT Y AY IAIG +DV
Sbjct: 69 VTSYKHDEAYGHIAIGVEDV 88
>pdb|3ZI1|A Chain A, Crystal Structure Of Human Glyoxalase Domain-containing
Protein 4 (glod4)
Length = 330
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 130/280 (46%), Gaps = 43/280 (15%)
Query: 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-----------KYTNAFLGYGPE 147
RR LH V++VG+ +T +FY + LGMK+LR + E K++ +G+GPE
Sbjct: 26 RRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGFGPE 85
Query: 148 DSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTV 207
D HFV ELTYNYGV Y +G F +A ++ P+
Sbjct: 86 DDHFVAELTYNYGVGDYKLGNDFMGITLASSQAVSNARKLEW----------PLTEVAEG 135
Query: 208 IAFIEDPDGYKFELLERG-PTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK 266
+ E P GYKF L R P +P+ +V L V DL +S+N++ GM++ +N E K
Sbjct: 136 VFETEAPGGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIY---ENDEEK 192
Query: 267 YTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT--------DDVYKTAEAIK 318
A++GY D LEL G D+ A+ +IA +D+ K E K
Sbjct: 193 QR-ALLGYA--DNQCKLELQGVKGGVDH--AAAFGRIAFSCPQKELPDLEDLMKR-ENQK 246
Query: 319 LFGGKVTREPGPLPGINT-KITACLDPDGWKTVFVDNVDF 357
+ V+ + PG T ++ DPDG + FV + F
Sbjct: 247 ILTPLVSLD---TPGKATVQVVILADPDGHEICFVGDEAF 283
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 74/148 (50%), Gaps = 30/148 (20%)
Query: 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYG-----PEDSH----- 150
+ + R+ D +++ FYT LG+ LL+K D P K++ FL Y P+D
Sbjct: 32 LQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAW 91
Query: 151 -----FVIELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKVTR 196
+ELT+N+G + Y G GFGH GIAV DV + + G K +
Sbjct: 92 TFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVK 151
Query: 197 EP--GPVKGGNTVIAFIEDPDGYKFELL 222
+P G +KG +AFI+DPDGY E+L
Sbjct: 152 KPDDGKMKG----LAFIQDPDGYWIEIL 175
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 45/182 (24%)
Query: 197 EPGPVKGG---NTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 253
EP P G T + DPD + L L Q MLR+ D +S++FY + G
Sbjct: 3 EPQPASSGLTDETAFSCCSDPDPSTKDFL--------LQQTMLRIKDPKKSLDFYTRVLG 54
Query: 254 MELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGVTD--- 293
+ LL+K D P K+++ + Y EDKN LELT+N+G D
Sbjct: 55 LTLLQKLDFPAMKFSLYFLAY--EDKNDIPKDKSEKTAWTFSRKATLELTHNWGTEDDET 112
Query: 294 --YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITACLDPD 345
Y GN+ + I I DVY + + G K ++P G + G + DPD
Sbjct: 113 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 168
Query: 346 GW 347
G+
Sbjct: 169 GY 170
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 34/150 (22%)
Query: 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV-------- 152
+ + RV D +++ FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 31 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 88
Query: 153 ---------IELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKV 194
+ELT+N+G + Y G GFGH GIAV DV + + G K
Sbjct: 89 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 148
Query: 195 TREP--GPVKGGNTVIAFIEDPDGYKFELL 222
++P G +KG +AFI+DPDGY E+L
Sbjct: 149 VKKPDDGKMKG----LAFIQDPDGYWIEIL 174
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 45/182 (24%)
Query: 197 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 253
EP P GG T ++ D D + L L Q MLRV D +S++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFYTRVLG 53
Query: 254 MELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGVTD--- 293
M L++K D P K+++ + Y EDKN LELT+N+G D
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 294 --YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITACLDPD 345
Y GN+ + I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 346 GW 347
G+
Sbjct: 168 GY 169
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 34/150 (22%)
Query: 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV-------- 152
+ + RV D +++ FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 35 LQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 92
Query: 153 ---------IELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKV 194
+ELT+N+G + Y G GFGH GIAV DV + + G K
Sbjct: 93 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 152
Query: 195 TREP--GPVKGGNTVIAFIEDPDGYKFELL 222
++P G +KG +AFI+DPDGY E+L
Sbjct: 153 VKKPDDGKMKG----LAFIQDPDGYWIEIL 178
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 80/187 (42%), Gaps = 45/187 (24%)
Query: 192 GKVTREPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFY 248
G EP P GG T ++ D D + L L Q MLRV D +S++FY
Sbjct: 1 GSHMAEPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQQTMLRVKDPKKSLDFY 52
Query: 249 EQAFGMELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGV 291
+ GM L++K D P K+++ + Y EDKN LELT+N+G
Sbjct: 53 TRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGT 110
Query: 292 TD-----YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITA 340
D Y GN+ + I I DVY + + G K ++P G + G +
Sbjct: 111 EDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAF 166
Query: 341 CLDPDGW 347
DPDG+
Sbjct: 167 IQDPDGY 173
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 34/150 (22%)
Query: 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFV-------- 152
+ + RV D +++ FYT LGM L++K D P K++ FL Y ED + +
Sbjct: 31 LQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKI 88
Query: 153 ---------IELTYNYGVD-----KYDIGT----GFGHFGIAVDDVAKTVELIKAKGGKV 194
+ELT+N+G + Y G GFGH GIAV DV + + G K
Sbjct: 89 AWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKF 148
Query: 195 TREP--GPVKGGNTVIAFIEDPDGYKFELL 222
++P G +KG +AFI+DPDGY ++L
Sbjct: 149 VKKPDDGKMKG----LAFIQDPDGYWIQIL 174
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 45/182 (24%)
Query: 197 EPGPVKGGNT---VIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINFYEQAFG 253
EP P GG T ++ D D + L L + MLRV D +S++FY + G
Sbjct: 2 EPQPPSGGLTDEAALSCCSDADPSTKDFL--------LQETMLRVKDPKKSLDFYTRVLG 53
Query: 254 MELLRKRDNPEYKYTIAMMGYGPEDKN-----------------VVLELTYNYGVTD--- 293
M L++K D P K+++ + Y EDKN LELT+N+G D
Sbjct: 54 MTLIQKCDFPIMKFSLYFLAY--EDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDET 111
Query: 294 --YDKGNA----YAQIAIGTDDVYKTAEAIKLFGGKVTREP--GPLPGINTKITACLDPD 345
Y GN+ + I I DVY + + G K ++P G + G + DPD
Sbjct: 112 QSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKG----LAFIQDPD 167
Query: 346 GW 347
G+
Sbjct: 168 GY 169
>pdb|3OA4|A Chain A, Crystal Structure Of Hypothetical Protein Bh1468 From
Bacillus Halodurans C-125
Length = 161
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Query: 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY 159
++ H+ V + + FY L +KLL D+P + AFL G + L+
Sbjct: 8 KLDHIGIAVTSIKDVLPFYVGSLKLKLLGMEDLPSQGVKIAFLEIGESKIELLEPLSEES 67
Query: 160 GVDKY--DIGTGFGHFGIAVDDVAKTVELIKAKGGK-VTREPGP-VKGGNTVIAFIEDPD 215
+ K+ G G H I V + + ++ +K G + + EP P +G
Sbjct: 68 PIAKFIQKRGEGIHHIAIGVKSIEERIQEVKENGVQMINDEPVPGARGAQVAFLHPRSAR 127
Query: 216 GYKFELLERGPTPEPL 231
G +E E+ E L
Sbjct: 128 GVLYEFCEKKEQAENL 143
>pdb|4G6X|A Chain A, Crystal Structure Of GlyoxalaseBLEOMYCIN RESISTANCE
PROTEIN FROM Catenulispora Acidiphila
Length = 155
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 93 WVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP--EEKYTNAFLGYGPEDSH 150
+ + + R+ V D + FYT LG L K D+P +++ P+ +
Sbjct: 19 YFQSNAXRIHLTNVFVDDQAKAESFYTGKLG--FLVKADVPVGADRWLTVVSPEAPDGTQ 76
Query: 151 FVIELTYNYGVDKYD---IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTV 207
++E + + V + + G AVDD+A E + A G + T+E P G V
Sbjct: 77 LLLEPSSHAAVTPFKEALVADGIPAASFAVDDIAAEYERLSALGVRFTQE--PTDXGPVV 134
Query: 208 IAFIEDPDGYKFELLE 223
A ++D G +L +
Sbjct: 135 TAILDDTCGNLIQLXQ 150
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 4/126 (3%)
Query: 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYN 158
+ + HV + T FY E LG ++LR+ PE+ L G ++ I +
Sbjct: 4 KEIHHVAINASNYQATKNFYVEKLGFEVLRENHRPEKNDIKLDLKLGSQELEIFISDQFP 63
Query: 159 YGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG-GNTVIAFIEDPDGY 217
Y G H V+ + + + + +G + EP V F DPDG
Sbjct: 64 -ARPSYPEALGLRHLAFKVEHIEEVIAFLNEQG--IETEPLRVDDFTGKKXTFFFDPDGL 120
Query: 218 KFELLE 223
EL E
Sbjct: 121 PLELHE 126
>pdb|3RMU|A Chain A, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|B Chain B, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|C Chain C, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
pdb|3RMU|D Chain D, Crystal Structure Of Human Methylmalonyl-Coa Epimerase,
Mcee
Length = 134
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY 159
R+ HV V DL++ FY LG ++ +PE + F+ G +EL +
Sbjct: 5 RLNHVAIAVPDLEKAAAFYKNILGAQVSEAVPLPEHGVSVVFVNLGNTK----MELLHPL 60
Query: 160 GVD-------KYDIGTGFGHFGIAVDDVAKTVELIKAK 190
G+D + + G H I VD++ V +K K
Sbjct: 61 GLDSPIAGFLQKNKAGGMHHICIEVDNINAAVMDLKKK 98
>pdb|1JC5|A Chain A, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|B Chain B, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|C Chain C, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|D Chain D, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|E Chain E, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
pdb|1JC5|F Chain F, Crystal Structure Of Native Methylmalonyl-Coa Epimerase
Length = 148
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIEL------- 155
HV Y D D K+Y E G L + + PE+ + + + + ++
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIMMAPAAKLTEHMTQVQVMAPLN 71
Query: 156 ---TYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVT-REPGPVKGGNTV 207
T + K++ G H VDD+ ++ +G ++ EP GGN +
Sbjct: 72 DESTVAKWLAKHNGRAGLHHMAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRI 127
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGP-EDSHFVIELT-YNYG 160
HV V D D++ +FY LG +++R+ P+ L G E F +LT NY
Sbjct: 8 HVALIVSDYDKSYEFYVNQLGFEVIRENHRPKRHDYKLDLKCGDIELEIFGNKLTDSNYC 67
Query: 161 VDKYDI-----GTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPD 215
I G H V+DV + + + A G +V G +AF DPD
Sbjct: 68 APPERISWPREACGLRHLAFYVEDVEASRQELIALGIRVEEVRYDDYTGKK-MAFFFDPD 126
Query: 216 GYKFELLE 223
G EL E
Sbjct: 127 GLPLELHE 134
>pdb|1JC4|A Chain A, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|B Chain B, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|C Chain C, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
pdb|1JC4|D Chain D, Crystal Structure Of Se-Met Methylmalonyl-Coa Epimerase
Length = 148
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 11/116 (9%)
Query: 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVI--------- 153
HV Y D D K+Y E G L + + PE+ + +
Sbjct: 12 HVAYACPDADEASKYYQETFGWHELHREENPEQGVVEIXXAPAAKLTEHXTQVQVXAPLN 71
Query: 154 -ELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVT-REPGPVKGGNTV 207
E T + K++ G H VDD+ ++ +G ++ EP GGN +
Sbjct: 72 DESTVAKWLAKHNGRAGLHHXAWRVDDIDAVSATLRERGVQLLYDEPKLGTGGNRI 127
>pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1T|D Chain D, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4)
From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom
Resolution
pdb|3V1U|A Chain A, Crystal Structure Of A Beta-Ketoacyl Reductase Fabg4 From
Mycobacterium Tuberculosis H37rv Complexed With Nad+ And
Hexanoyl-Coa At 2.5 Angstrom Resolution
Length = 462
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 225 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 282
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 131 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 181
Query: 283 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 339
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 182 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 238
Query: 340 ACLDPDGWKTVFVD 353
DG V +D
Sbjct: 239 EVFARDGAHVVAID 252
>pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|B Chain B, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|C Chain C, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
pdb|4FW8|D Chain D, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh
Length = 454
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 225 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 282
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 123 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 173
Query: 283 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 339
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 174 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 230
Query: 340 ACLDPDGWKTVFVD 353
DG V +D
Sbjct: 231 EVFARDGAHVVAID 244
>pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
pdb|3M1L|B Chain B, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A
Putative Ketoacyl Reductase (Fabg4) From Mycobacterium
Tuberculosis H37rv At 2.5 Angstrom Resolution
Length = 432
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 225 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 282
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 107 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 157
Query: 283 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 339
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 158 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 214
Query: 340 ACLDPDGWKTVFVD 353
DG V +D
Sbjct: 215 EVFARDGAHVVAID 228
>pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|B Chain B, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|C Chain C, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
pdb|3Q6I|D Chain D, Crystal Structure Of Fabg4 And Coenzyme Binary Complex
Length = 446
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 225 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 282
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 115 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 165
Query: 283 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 339
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 166 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 222
Query: 340 ACLDPDGWKTVFVD 353
DG V +D
Sbjct: 223 EVFARDGAHVVAID 236
>pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
pdb|3LLS|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase From Mycobacterium Tuberculosis
Length = 475
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 225 GPTPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVV-- 282
G TPE R+ R++ + ++ G EL R T A++ P+ K
Sbjct: 144 GGTPEAAASTNERIAQ--RALEGFTRSLGKELRRG-------ATTALVYLSPDAKPAATG 194
Query: 283 LELTYNY---GVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKIT 339
LE T + + Y G ++ +G DD A+ K GKV G GI I
Sbjct: 195 LESTMRFLLSAKSAYVDGQVFS---VGADDSTPPADWEKPLDGKVAIVTGAARGIGATIA 251
Query: 340 ACLDPDGWKTVFVD 353
DG V +D
Sbjct: 252 EVFARDGAHVVAID 265
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 311 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV-----DNVDFLKELE 362
+ T + +KL G T P G+NT + +D D +TV+V D V L LE
Sbjct: 210 HNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD--RTVYVADRGNDRVVKLTSLE 264
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 92 EWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMK 125
E ++ R+ H+V V D+ TI+FY E LG
Sbjct: 15 ESIQXIIDRIDHLVLTVSDISTTIRFYEEVLGFS 48
>pdb|1J2W|A Chain A, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|B Chain B, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|C Chain C, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1J2W|D Chain D, Tetrameric Structure Of Aldolase From Thermus Thermophilus
Hb8
pdb|1UB3|A Chain A, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|B Chain B, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|C Chain C, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
pdb|1UB3|D Chain D, Crystal Structure Of Tetrameric Structure Of Aldolase From
Thermus Thermophilus Hb8
Length = 220
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 144 YGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVEL------IKAKGGKVTRE 197
+ PE+ + E G D TGFG G +++DVA V + +KA GG RE
Sbjct: 130 FSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRE 189
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 92 EWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMK 125
E ++ R+ H+V V D+ TI+FY E LG
Sbjct: 15 ESIQMIIDRIDHLVLTVSDISTTIRFYEEVLGFS 48
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 244 SINFYEQAFGMELLRKRDNPEYKYT-------IAMMGYGPEDKNVVLELTYNYGVTDYDK 296
+INF + G++L++KR + +A++ PE + ++E + YG+ +
Sbjct: 103 AINFED---GVKLVKKRGKFMQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPYGIVEGAN 159
Query: 297 GNAYAQIAIGTDDVY--KTAEAIKLFGGKVTREPGPLP 332
N+ QI I + V K E IK GG+ + P P
Sbjct: 160 YNSPGQIVISGELVALEKAMEFIKEVGGRAIKLPVSAP 197
>pdb|2XFC|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
Length = 439
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 199
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 169 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 225
Query: 200 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 247
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 226 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 282
Query: 248 YEQAF 252
E AF
Sbjct: 283 PEAAF 287
>pdb|3N41|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Spontaneous Cleavage) Of Chikungunya Virus.
pdb|3N42|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Furin Cleavage) Of Chikungunya Virus.
pdb|3N43|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage) Of Chikungunya Virus.
pdb|3N44|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage; Osmium Soak) Of Chikungunya
Virus
Length = 473
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 199
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 191 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 247
Query: 200 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 247
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 248 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 304
Query: 248 YEQAF 252
E AF
Sbjct: 305 PEAAF 309
>pdb|2XFB|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
Length = 391
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 199
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 169 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 225
Query: 200 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 247
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 226 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 282
Query: 248 YEQAF 252
E AF
Sbjct: 283 PEAAF 287
>pdb|3N40|F Chain F, Crystal Structure Of The Immature Envelope Glycoprotein
Complex Of Chikungunya Virus
Length = 393
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGF-GHFGIAVDDVAKTVEL--IKAKGGKVTREPG 199
+ P D+ V+ Y +D G G G FG D ++T E + A V + P
Sbjct: 171 AWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFG---DIQSRTPESKDVYANTQLVLQRPA 227
Query: 200 PVKGGNTVIAFIEDPDGYKFELLERGPTPE------------PLCQVMLRVGDLDRSINF 247
G + + + P G+K+ L ERG + + P+ V VG++ SI+
Sbjct: 228 ---AGTVHVPYSQAPSGFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDI 284
Query: 248 YEQAF 252
E AF
Sbjct: 285 PEAAF 289
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGK---VTR 196
G P SH ++ LT N VD + + +DDV + E+ K GGK VTR
Sbjct: 13 GLVPRGSHXILTLTLNPSVD-----ISYPLTALKLDDVNRVQEVSKTAGGKGLNVTR 64
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 143 GYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGK---VTR 196
G P SH ++ LT N VD + + +DDV + E+ K GGK VTR
Sbjct: 13 GLVPRGSHXILTLTLNPSVD-----ISYPLTALKLDDVNRVQEVSKTAGGKGLNVTR 64
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 28.1 bits (61), Expect = 9.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 187 IKAKGGKVTREPGPVKGGNT----VIAFIEDPDGYKFELLERGPTPEPLC 232
I + K+T +P GG T V+ E +G K+E++ G T E LC
Sbjct: 30 IHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLC 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.141 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,708,204
Number of Sequences: 62578
Number of extensions: 480537
Number of successful extensions: 1137
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 58
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)