Query 018011
Match_columns 362
No_of_seqs 347 out of 2520
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:22:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02300 lactoylglutathione ly 100.0 5.5E-44 1.2E-48 329.4 34.3 278 85-362 9-286 (286)
2 KOG2943 Predicted glyoxalase [ 100.0 9.5E-37 2.1E-41 257.0 20.0 259 89-362 6-278 (299)
3 TIGR03211 catechol_2_3 catecho 100.0 4E-31 8.6E-36 246.1 29.3 234 98-353 2-264 (303)
4 TIGR02295 HpaD 3,4-dihydroxyph 100.0 8E-31 1.7E-35 243.1 30.6 234 97-355 1-257 (294)
5 TIGR03213 23dbph12diox 2,3-dih 100.0 5.6E-30 1.2E-34 236.4 29.1 235 98-355 1-264 (286)
6 TIGR01263 4HPPD 4-hydroxypheny 99.9 6.5E-21 1.4E-25 180.7 27.0 222 99-328 1-267 (353)
7 COG2514 Predicted ring-cleavag 99.9 8.4E-20 1.8E-24 159.4 22.4 194 97-309 7-242 (265)
8 TIGR00068 glyox_I lactoylgluta 99.8 3.1E-19 6.8E-24 148.8 18.1 136 95-230 12-147 (150)
9 PLN02367 lactoylglutathione ly 99.8 5.1E-19 1.1E-23 154.3 19.5 128 98-227 73-225 (233)
10 PLN02367 lactoylglutathione ly 99.8 1.3E-19 2.8E-24 158.1 15.7 127 230-358 75-226 (233)
11 PLN02875 4-hydroxyphenylpyruva 99.8 4.3E-18 9.4E-23 160.4 23.3 222 101-328 1-295 (398)
12 PRK10291 glyoxalase I; Provisi 99.8 1.7E-18 3.7E-23 140.5 17.0 124 106-229 2-125 (129)
13 PRK10291 glyoxalase I; Provisi 99.8 9.7E-19 2.1E-23 141.9 15.1 122 235-356 1-122 (129)
14 TIGR00068 glyox_I lactoylgluta 99.8 5E-18 1.1E-22 141.5 16.0 132 227-358 14-145 (150)
15 PLN03042 Lactoylglutathione ly 99.8 1.3E-17 2.8E-22 142.7 17.5 127 98-226 25-176 (185)
16 cd07243 2_3_CTD_C C-terminal d 99.8 1.1E-17 2.5E-22 138.1 16.3 119 97-224 3-125 (143)
17 PLN03042 Lactoylglutathione ly 99.8 9.8E-18 2.1E-22 143.4 15.4 126 229-356 26-176 (185)
18 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1.4E-17 3.1E-22 133.6 15.0 114 230-353 2-126 (127)
19 cd07233 Glyoxalase_I Glyoxalas 99.8 2.3E-17 4.9E-22 131.8 16.2 120 101-222 1-121 (121)
20 cd08342 HPPD_N_like N-terminal 99.8 1.6E-17 3.5E-22 136.1 14.8 124 231-361 1-130 (136)
21 cd07265 2_3_CTD_N N-terminal d 99.8 2E-17 4.4E-22 132.7 15.0 115 98-224 2-119 (122)
22 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 4.3E-17 9.3E-22 134.4 16.9 123 98-224 1-141 (142)
23 cd08360 MhqB_like_C C-terminal 99.8 3.6E-17 7.9E-22 133.6 16.3 118 99-226 2-122 (134)
24 cd07257 THT_oxygenase_C The C- 99.8 1.1E-17 2.3E-22 140.0 12.8 119 100-225 1-126 (153)
25 TIGR03213 23dbph12diox 2,3-dih 99.8 2.3E-17 5.1E-22 152.3 16.3 157 55-224 99-263 (286)
26 PRK11478 putative lyase; Provi 99.8 4.6E-17 1E-21 131.8 16.0 122 97-223 3-128 (129)
27 cd07233 Glyoxalase_I Glyoxalas 99.8 4.6E-17 1E-21 130.0 15.4 120 231-352 1-121 (121)
28 PRK04101 fosfomycin resistance 99.7 5.5E-17 1.2E-21 133.4 15.8 118 97-225 1-120 (139)
29 cd08358 Glo_EDI_BRP_like_21 Th 99.7 8.8E-17 1.9E-21 129.0 16.4 115 99-223 1-126 (127)
30 TIGR03211 catechol_2_3 catecho 99.7 3.4E-17 7.4E-22 152.4 16.2 158 55-224 99-265 (303)
31 cd08342 HPPD_N_like N-terminal 99.7 1.4E-16 2.9E-21 130.6 16.9 121 101-228 1-127 (136)
32 cd07237 BphC1-RGP6_C_like C-te 99.7 1.3E-16 2.8E-21 133.6 15.8 121 97-225 6-132 (154)
33 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 2.2E-16 4.8E-21 126.5 16.0 121 99-223 2-125 (125)
34 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 1.6E-16 3.4E-21 127.5 14.9 119 100-222 1-125 (125)
35 TIGR03645 glyox_marine lactoyl 99.7 2.3E-16 4.9E-21 133.2 16.4 125 98-225 2-152 (162)
36 TIGR02295 HpaD 3,4-dihydroxyph 99.7 1.1E-16 2.5E-21 148.2 15.9 157 54-225 95-257 (294)
37 PLN02300 lactoylglutathione ly 99.7 1.9E-16 4.1E-21 146.1 17.2 147 59-225 133-279 (286)
38 cd08353 Glo_EDI_BRP_like_7 Thi 99.7 1.4E-16 2.9E-21 131.4 14.6 121 230-354 3-141 (142)
39 cd07256 HPCD_C_class_II C-term 99.7 3E-16 6.6E-21 132.3 16.4 118 99-225 2-124 (161)
40 cd09013 BphC-JF8_N_like N-term 99.7 2.3E-16 5E-21 126.4 14.9 114 97-225 3-119 (121)
41 cd07258 PpCmtC_C C-terminal do 99.7 2.3E-16 5.1E-21 129.9 15.2 113 102-226 1-116 (141)
42 cd09014 BphC-JF8_C_like C-term 99.7 3.7E-16 7.9E-21 132.5 16.7 123 97-225 3-128 (166)
43 cd07266 HPCD_N_class_II N-term 99.7 2.1E-16 4.5E-21 126.5 14.1 115 97-224 1-118 (121)
44 cd08347 PcpA_C_like C-terminal 99.7 4.5E-16 9.7E-21 130.6 15.9 118 100-226 1-122 (157)
45 KOG0638 4-hydroxyphenylpyruvat 99.7 4.6E-17 1E-21 143.6 10.1 254 97-354 14-337 (381)
46 cd08361 PpCmtC_N N-terminal do 99.7 2.8E-16 6.2E-21 126.6 13.6 112 97-224 3-119 (124)
47 cd07255 Glo_EDI_BRP_like_12 Th 99.7 9E-16 2E-20 123.4 16.2 118 99-227 1-122 (125)
48 PF00903 Glyoxalase: Glyoxalas 99.7 1.2E-16 2.5E-21 128.5 11.0 120 100-221 1-128 (128)
49 cd08364 FosX FosX, a fosfomyci 99.7 7.9E-16 1.7E-20 125.2 16.0 119 97-224 1-122 (131)
50 cd07239 BphC5-RK37_C_like C-te 99.7 5.6E-16 1.2E-20 128.2 15.3 113 99-225 3-118 (144)
51 TIGR03081 metmalonyl_epim meth 99.7 2.8E-16 6.1E-21 126.8 13.1 119 100-223 1-128 (128)
52 cd07257 THT_oxygenase_C The C- 99.7 3.2E-16 6.9E-21 131.1 13.3 122 230-358 1-129 (153)
53 cd07252 BphC1-RGP6_N_like N-te 99.7 5.8E-16 1.3E-20 123.9 14.0 113 99-225 1-118 (120)
54 TIGR03645 glyox_marine lactoyl 99.7 6.5E-16 1.4E-20 130.4 14.7 125 228-355 2-152 (162)
55 cd08360 MhqB_like_C C-terminal 99.7 8.7E-16 1.9E-20 125.4 15.0 121 228-358 1-124 (134)
56 cd07241 Glo_EDI_BRP_like_3 Thi 99.7 6.5E-16 1.4E-20 123.9 13.9 119 230-352 1-125 (125)
57 PRK11478 putative lyase; Provi 99.7 8.5E-16 1.8E-20 124.3 14.4 121 229-354 5-129 (129)
58 cd07267 THT_Oxygenase_N N-term 99.7 1.6E-15 3.5E-20 120.0 15.0 110 98-224 1-110 (113)
59 cd07253 Glo_EDI_BRP_like_2 Thi 99.7 1E-15 2.3E-20 122.5 14.0 118 98-223 1-124 (125)
60 cd08343 ED_TypeI_classII_C C-t 99.7 2.1E-15 4.5E-20 122.7 15.8 116 102-226 1-119 (131)
61 cd07243 2_3_CTD_C C-terminal d 99.7 1.8E-15 3.9E-20 125.0 15.6 118 228-354 4-125 (143)
62 cd07247 SgaA_N_like N-terminal 99.7 1.5E-15 3.3E-20 120.1 14.6 114 231-353 1-114 (114)
63 cd08363 FosB FosB, a fosfomyci 99.7 1.1E-15 2.4E-20 124.4 13.6 113 101-224 1-115 (131)
64 cd08362 BphC5-RrK37_N_like N-t 99.7 1.7E-15 3.7E-20 120.8 14.4 114 98-225 1-118 (120)
65 cd08352 Glo_EDI_BRP_like_1 Thi 99.7 2.1E-15 4.5E-20 120.8 14.6 119 230-353 3-125 (125)
66 TIGR03081 metmalonyl_epim meth 99.7 1.7E-15 3.7E-20 122.2 13.9 119 230-353 1-128 (128)
67 cd07263 Glo_EDI_BRP_like_16 Th 99.7 2.5E-15 5.4E-20 119.1 14.7 117 103-223 1-119 (119)
68 PRK06724 hypothetical protein; 99.7 2.7E-15 5.9E-20 121.4 14.8 113 96-224 3-123 (128)
69 cd08351 ChaP_like ChaP, an enz 99.7 3.3E-15 7.2E-20 120.1 15.2 113 97-224 1-121 (123)
70 cd07240 ED_TypeI_classII_N N-t 99.7 2.9E-15 6.2E-20 118.9 14.6 112 99-225 1-115 (117)
71 cd07247 SgaA_N_like N-terminal 99.7 4.6E-15 9.9E-20 117.3 15.3 114 101-223 1-114 (114)
72 cd07245 Glo_EDI_BRP_like_9 Thi 99.7 1.9E-15 4.1E-20 118.6 12.4 113 101-221 1-114 (114)
73 cd07249 MMCE Methylmalonyl-CoA 99.6 3E-15 6.5E-20 120.6 13.6 119 101-223 1-128 (128)
74 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 8.1E-15 1.8E-19 118.4 16.0 116 100-223 1-127 (128)
75 cd08346 PcpA_N_like N-terminal 99.6 5.7E-15 1.2E-19 118.5 14.6 120 100-222 1-126 (126)
76 cd07265 2_3_CTD_N N-terminal d 99.6 3.3E-15 7.1E-20 119.8 13.1 116 229-356 3-121 (122)
77 cd07263 Glo_EDI_BRP_like_16 Th 99.6 4.8E-15 1E-19 117.5 13.7 117 233-353 1-119 (119)
78 cd09011 Glo_EDI_BRP_like_23 Th 99.6 5.3E-15 1.2E-19 118.3 13.9 114 99-224 1-119 (120)
79 cd07237 BphC1-RGP6_C_like C-te 99.6 6.3E-15 1.4E-19 123.3 14.8 123 227-357 6-134 (154)
80 cd07258 PpCmtC_C C-terminal do 99.6 7.7E-15 1.7E-19 120.8 14.4 117 232-360 1-120 (141)
81 cd08355 Glo_EDI_BRP_like_14 Th 99.6 1.7E-14 3.8E-19 115.5 15.9 115 234-353 3-121 (122)
82 cd08348 BphC2-C3-RGP6_C_like T 99.6 2.7E-14 5.8E-19 116.4 16.7 119 100-227 1-123 (134)
83 cd07256 HPCD_C_class_II C-term 99.6 1.2E-14 2.7E-19 122.5 15.0 119 228-355 1-124 (161)
84 cd08343 ED_TypeI_classII_C C-t 99.6 2.2E-14 4.7E-19 116.7 15.5 116 232-356 1-119 (131)
85 cd07253 Glo_EDI_BRP_like_2 Thi 99.6 1.5E-14 3.3E-19 115.7 14.4 116 230-353 3-124 (125)
86 cd07264 Glo_EDI_BRP_like_15 Th 99.6 1.9E-14 4.1E-19 115.6 14.8 115 231-354 1-125 (125)
87 cd07244 FosA FosA, a Fosfomyci 99.6 1.3E-14 2.8E-19 116.3 13.4 109 100-225 1-111 (121)
88 cd08359 Glo_EDI_BRP_like_22 Th 99.6 2E-14 4.3E-19 114.5 14.5 111 103-223 4-119 (119)
89 PRK04101 fosfomycin resistance 99.6 1.7E-14 3.6E-19 118.6 14.1 115 230-355 4-120 (139)
90 PF00903 Glyoxalase: Glyoxalas 99.6 2.7E-15 5.8E-20 120.5 9.1 118 230-351 1-128 (128)
91 cd07245 Glo_EDI_BRP_like_9 Thi 99.6 1.4E-14 3.1E-19 113.6 12.7 113 231-351 1-114 (114)
92 cd07249 MMCE Methylmalonyl-CoA 99.6 2.2E-14 4.7E-19 115.5 14.1 119 231-353 1-128 (128)
93 cd09011 Glo_EDI_BRP_like_23 Th 99.6 1.4E-14 2.9E-19 115.9 12.7 113 230-354 2-119 (120)
94 cd07264 Glo_EDI_BRP_like_15 Th 99.6 3.3E-14 7.1E-19 114.2 15.0 117 101-224 1-125 (125)
95 cd08346 PcpA_N_like N-terminal 99.6 2.2E-14 4.8E-19 115.1 13.6 120 230-352 1-126 (126)
96 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 5.5E-14 1.2E-18 112.2 15.6 115 234-353 5-121 (122)
97 cd08345 Fosfomycin_RP Fosfomyc 99.6 2.3E-14 5E-19 113.0 13.0 109 103-224 1-111 (113)
98 PRK06724 hypothetical protein; 99.6 2.5E-14 5.3E-19 115.8 13.3 111 229-355 6-124 (128)
99 cd08355 Glo_EDI_BRP_like_14 Th 99.6 1.1E-13 2.4E-18 110.8 16.7 116 105-223 4-121 (122)
100 cd08347 PcpA_C_like C-terminal 99.6 3.9E-14 8.3E-19 118.8 14.4 117 230-355 1-121 (157)
101 cd07262 Glo_EDI_BRP_like_19 Th 99.6 4.9E-14 1.1E-18 113.0 14.5 114 101-222 1-122 (123)
102 COG3324 Predicted enzyme relat 99.6 4.7E-14 1E-18 111.4 13.6 121 227-355 6-126 (127)
103 cd08363 FosB FosB, a fosfomyci 99.6 3.5E-14 7.7E-19 115.5 13.3 114 231-355 1-116 (131)
104 cd07242 Glo_EDI_BRP_like_6 Thi 99.6 8E-14 1.7E-18 112.5 15.3 117 230-354 1-128 (128)
105 cd07254 Glo_EDI_BRP_like_20 Th 99.6 7E-14 1.5E-18 111.6 14.6 111 102-224 3-117 (120)
106 cd08354 Glo_EDI_BRP_like_13 Th 99.6 6.2E-14 1.4E-18 112.0 14.3 113 101-223 1-121 (122)
107 cd07239 BphC5-RK37_C_like C-te 99.6 6.1E-14 1.3E-18 116.0 14.4 116 228-357 2-120 (144)
108 cd08344 MhqB_like_N N-terminal 99.6 6.1E-14 1.3E-18 110.7 13.8 107 99-224 1-109 (112)
109 COG3185 4-hydroxyphenylpyruvat 99.6 1.2E-13 2.6E-18 124.8 17.1 220 98-329 20-275 (363)
110 cd07246 Glo_EDI_BRP_like_8 Thi 99.6 1.8E-13 3.9E-18 109.2 16.6 115 105-224 6-122 (122)
111 PF12681 Glyoxalase_2: Glyoxal 99.6 7E-14 1.5E-18 109.2 13.8 108 106-222 1-108 (108)
112 cd08351 ChaP_like ChaP, an enz 99.6 6.6E-14 1.4E-18 112.5 13.7 111 230-355 4-122 (123)
113 cd08357 Glo_EDI_BRP_like_18 Th 99.6 7.6E-14 1.6E-18 112.0 14.0 113 103-223 2-124 (125)
114 cd07238 Glo_EDI_BRP_like_5 Thi 99.6 1.2E-13 2.5E-18 108.9 14.7 108 104-224 4-111 (112)
115 cd07266 HPCD_N_class_II N-term 99.6 5.1E-14 1.1E-18 112.6 12.5 115 229-356 3-120 (121)
116 cd09013 BphC-JF8_N_like N-term 99.6 5.6E-14 1.2E-18 112.5 12.7 112 229-355 5-119 (121)
117 cd09014 BphC-JF8_C_like C-term 99.6 1E-13 2.3E-18 117.4 14.9 120 229-354 5-127 (166)
118 cd08359 Glo_EDI_BRP_like_22 Th 99.6 1.3E-13 2.7E-18 109.9 14.5 112 233-353 4-119 (119)
119 cd08361 PpCmtC_N N-terminal do 99.6 6.7E-14 1.5E-18 112.7 12.6 112 229-356 5-121 (124)
120 cd08364 FosX FosX, a fosfomyci 99.6 1.3E-13 2.9E-18 112.0 14.3 117 229-355 3-123 (131)
121 cd08349 BLMA_like Bleomycin bi 99.6 1.6E-13 3.4E-18 107.8 14.2 109 235-353 3-112 (112)
122 cd07238 Glo_EDI_BRP_like_5 Thi 99.5 1.9E-13 4.1E-18 107.7 13.9 108 234-354 4-111 (112)
123 cd07252 BphC1-RGP6_N_like N-te 99.5 1.8E-13 3.8E-18 109.5 13.7 112 230-355 2-118 (120)
124 cd08350 BLMT_like BLMT, a bleo 99.5 2.2E-13 4.7E-18 108.9 13.7 107 234-354 6-119 (120)
125 KOG2943 Predicted glyoxalase [ 99.5 3.9E-14 8.5E-19 120.5 9.7 119 228-355 15-144 (299)
126 cd07255 Glo_EDI_BRP_like_12 Th 99.5 2.4E-13 5.1E-18 109.2 13.8 116 230-356 2-121 (125)
127 cd08348 BphC2-C3-RGP6_C_like T 99.5 3.8E-13 8.2E-18 109.6 15.1 120 230-357 1-123 (134)
128 cd06587 Glo_EDI_BRP_like This 99.5 3E-13 6.6E-18 105.0 13.9 112 103-221 1-112 (112)
129 cd09012 Glo_EDI_BRP_like_24 Th 99.5 1.9E-13 4.2E-18 109.8 12.7 112 232-353 2-123 (124)
130 PF12681 Glyoxalase_2: Glyoxal 99.5 1.1E-13 2.4E-18 108.0 10.9 108 236-352 1-108 (108)
131 cd07261 Glo_EDI_BRP_like_11 Th 99.5 3.3E-13 7.1E-18 106.7 13.6 108 234-352 2-113 (114)
132 cd08354 Glo_EDI_BRP_like_13 Th 99.5 3.6E-13 7.9E-18 107.5 13.6 114 231-354 1-122 (122)
133 KOG2944 Glyoxalase [Carbohydra 99.5 4.6E-14 1E-18 112.9 8.1 122 231-355 23-169 (170)
134 cd07261 Glo_EDI_BRP_like_11 Th 99.5 5.2E-13 1.1E-17 105.5 13.7 108 104-222 2-113 (114)
135 cd08362 BphC5-RrK37_N_like N-t 99.5 3.6E-13 7.9E-18 107.3 12.9 112 230-355 3-118 (120)
136 cd06587 Glo_EDI_BRP_like This 99.5 5.4E-13 1.2E-17 103.6 13.1 112 233-351 1-112 (112)
137 cd08345 Fosfomycin_RP Fosfomyc 99.5 4.5E-13 9.8E-18 105.6 12.8 108 233-353 1-110 (113)
138 cd07240 ED_TypeI_classII_N N-t 99.5 5.4E-13 1.2E-17 105.7 13.3 111 230-355 2-115 (117)
139 cd08349 BLMA_like Bleomycin bi 99.5 8.9E-13 1.9E-17 103.5 14.3 109 105-223 3-112 (112)
140 COG3324 Predicted enzyme relat 99.5 8.5E-13 1.8E-17 104.3 13.9 117 99-224 8-125 (127)
141 cd07262 Glo_EDI_BRP_like_19 Th 99.5 7.3E-13 1.6E-17 106.1 13.9 114 231-352 1-122 (123)
142 cd07244 FosA FosA, a Fosfomyci 99.5 5.9E-13 1.3E-17 106.6 13.3 109 230-355 1-111 (121)
143 cd07235 MRD Mitomycin C resist 99.5 3.7E-13 8E-18 107.7 12.1 113 231-352 1-121 (122)
144 cd07235 MRD Mitomycin C resist 99.5 6.6E-13 1.4E-17 106.2 13.2 113 101-222 1-121 (122)
145 PF13669 Glyoxalase_4: Glyoxal 99.5 4.2E-13 9.1E-18 105.5 11.5 95 102-198 1-97 (109)
146 cd07254 Glo_EDI_BRP_like_20 Th 99.5 1.2E-12 2.6E-17 104.5 14.0 112 232-355 3-118 (120)
147 cd07267 THT_Oxygenase_N N-term 99.5 1.1E-12 2.3E-17 103.7 13.1 108 230-354 3-110 (113)
148 cd09012 Glo_EDI_BRP_like_24 Th 99.5 1.1E-12 2.5E-17 105.3 13.0 112 102-223 2-123 (124)
149 cd08357 Glo_EDI_BRP_like_18 Th 99.5 1E-12 2.2E-17 105.3 12.1 113 233-353 2-124 (125)
150 cd08350 BLMT_like BLMT, a bleo 99.4 2.7E-12 5.9E-17 102.5 13.9 107 104-224 6-119 (120)
151 cd08344 MhqB_like_N N-terminal 99.4 2.5E-12 5.5E-17 101.4 13.3 106 230-354 2-109 (112)
152 cd08356 Glo_EDI_BRP_like_17 Th 99.4 3.4E-12 7.4E-17 101.0 13.0 104 234-353 5-113 (113)
153 cd08356 Glo_EDI_BRP_like_17 Th 99.4 3.4E-12 7.3E-17 101.0 12.8 103 105-223 6-113 (113)
154 cd07251 Glo_EDI_BRP_like_10 Th 99.4 4.6E-12 9.9E-17 100.9 13.4 110 234-353 2-120 (121)
155 cd07251 Glo_EDI_BRP_like_10 Th 99.4 6.4E-12 1.4E-16 100.0 12.2 110 104-223 2-120 (121)
156 PF13669 Glyoxalase_4: Glyoxal 99.4 4.9E-12 1.1E-16 99.4 9.6 95 232-328 1-97 (109)
157 KOG2944 Glyoxalase [Carbohydra 99.3 2.2E-11 4.7E-16 97.7 11.6 118 99-224 41-168 (170)
158 cd07250 HPPD_C_like C-terminal 99.3 4.1E-11 8.8E-16 103.8 13.8 99 99-199 2-113 (191)
159 COG3565 Predicted dioxygenase 99.2 5.2E-10 1.1E-14 84.7 10.6 117 100-224 4-129 (138)
160 cd07250 HPPD_C_like C-terminal 99.1 3.7E-10 8.1E-15 97.7 11.1 98 230-329 3-113 (191)
161 COG2514 Predicted ring-cleavag 99.1 1.6E-09 3.4E-14 95.3 12.1 117 228-356 8-128 (265)
162 COG3565 Predicted dioxygenase 99.1 2.1E-09 4.5E-14 81.4 10.3 117 230-356 4-131 (138)
163 TIGR01263 4HPPD 4-hydroxypheny 99.0 1.5E-09 3.3E-14 103.1 11.2 102 95-198 153-267 (353)
164 cd06588 PhnB_like Escherichia 99.0 1.3E-08 2.7E-13 82.3 13.5 111 235-352 4-128 (128)
165 COG2764 PhnB Uncharacterized p 99.0 2.3E-08 5.1E-13 80.5 14.3 117 235-356 5-133 (136)
166 PF13468 Glyoxalase_3: Glyoxal 99.0 1.1E-08 2.3E-13 87.5 12.1 147 101-252 1-175 (175)
167 COG0346 GloA Lactoylglutathion 98.9 3E-09 6.4E-14 85.1 7.2 122 99-223 1-138 (138)
168 COG2764 PhnB Uncharacterized p 98.9 1.7E-07 3.7E-12 75.5 15.6 116 106-226 6-133 (136)
169 cd06588 PhnB_like Escherichia 98.9 1E-07 2.3E-12 76.9 14.3 110 105-221 4-127 (128)
170 COG3607 Predicted lactoylgluta 98.8 3.6E-08 7.8E-13 76.2 10.4 113 231-353 4-126 (133)
171 COG0346 GloA Lactoylglutathion 98.8 1.8E-08 3.9E-13 80.4 8.0 121 230-353 2-138 (138)
172 PLN02875 4-hydroxyphenylpyruva 98.8 1.5E-08 3.4E-13 96.0 8.4 100 97-198 177-295 (398)
173 COG3607 Predicted lactoylgluta 98.7 2E-07 4.3E-12 72.1 10.7 115 101-226 4-129 (133)
174 KOG0638 4-hydroxyphenylpyruvat 98.6 7.8E-08 1.7E-12 85.8 6.3 130 229-360 16-154 (381)
175 PF14506 CppA_N: CppA N-termin 98.5 5.5E-06 1.2E-10 63.9 14.2 113 102-224 2-114 (125)
176 PRK01037 trmD tRNA (guanine-N( 98.5 6.6E-07 1.4E-11 82.3 10.4 106 99-224 246-354 (357)
177 PRK01037 trmD tRNA (guanine-N( 98.4 1.8E-06 3.8E-11 79.5 10.0 105 229-353 246-353 (357)
178 PF14696 Glyoxalase_5: Hydroxy 98.4 1.3E-06 2.8E-11 70.8 7.2 123 98-229 7-131 (139)
179 COG3185 4-hydroxyphenylpyruvat 98.2 3.6E-06 7.9E-11 76.8 7.5 99 97-198 164-274 (363)
180 PRK10148 hypothetical protein; 98.2 8.4E-05 1.8E-09 61.4 14.6 113 235-355 6-142 (147)
181 PRK10148 hypothetical protein; 98.0 0.00041 8.9E-09 57.3 15.9 115 106-228 7-145 (147)
182 PF14506 CppA_N: CppA N-termin 97.9 0.00019 4.1E-09 55.6 11.0 112 233-356 3-116 (125)
183 PF14696 Glyoxalase_5: Hydroxy 97.8 0.00016 3.4E-09 58.7 9.3 117 229-356 8-128 (139)
184 PF13468 Glyoxalase_3: Glyoxal 97.7 0.00012 2.5E-09 62.5 7.2 87 231-323 1-101 (175)
185 PF06983 3-dmu-9_3-mt: 3-demet 96.4 0.21 4.5E-06 39.4 13.6 96 109-222 11-116 (116)
186 PF14507 CppA_C: CppA C-termin 96.2 0.0083 1.8E-07 45.5 4.6 92 231-351 6-100 (101)
187 PF06983 3-dmu-9_3-mt: 3-demet 95.7 0.36 7.7E-06 38.0 12.0 96 239-352 11-116 (116)
188 PF15067 FAM124: FAM124 family 95.7 0.19 4.1E-06 43.9 11.0 125 209-351 108-235 (236)
189 PF15067 FAM124: FAM124 family 94.8 0.31 6.7E-06 42.6 9.7 106 100-221 128-235 (236)
190 PF14507 CppA_C: CppA C-termin 92.2 0.11 2.4E-06 39.4 2.3 91 100-219 5-98 (101)
191 PRK11700 hypothetical protein; 86.8 11 0.00023 32.1 10.3 79 99-179 38-120 (187)
192 COG4747 ACT domain-containing 83.8 19 0.00041 28.2 10.5 121 172-326 5-135 (142)
193 cd07268 Glo_EDI_BRP_like_4 Thi 83.5 19 0.00042 29.4 9.9 77 101-179 2-82 (149)
194 PF06185 YecM: YecM protein; 81.8 14 0.0003 31.5 8.9 85 99-186 33-123 (185)
195 COG3865 Uncharacterized protei 77.1 38 0.00083 27.6 12.4 103 106-224 11-124 (151)
196 COG3865 Uncharacterized protei 73.2 49 0.0011 26.9 11.0 35 309-354 90-124 (151)
197 TIGR00318 cyaB adenylyl cyclas 68.0 60 0.0013 27.3 9.5 79 173-258 6-103 (174)
198 PF13670 PepSY_2: Peptidase pr 61.7 18 0.00039 26.3 4.5 45 309-355 30-74 (83)
199 cd04883 ACT_AcuB C-terminal AC 59.1 22 0.00048 24.5 4.5 29 299-327 41-71 (72)
200 cd04882 ACT_Bt0572_2 C-termina 59.1 20 0.00042 24.1 4.1 28 298-325 38-65 (65)
201 PF13670 PepSY_2: Peptidase pr 56.4 62 0.0013 23.4 6.6 45 179-225 30-74 (83)
202 cd04883 ACT_AcuB C-terminal AC 52.1 37 0.00081 23.3 4.7 29 169-197 41-71 (72)
203 PF07063 DUF1338: Domain of un 51.5 34 0.00075 31.7 5.5 30 166-195 181-216 (302)
204 COG4747 ACT domain-containing 46.5 83 0.0018 24.7 5.9 87 100-196 41-135 (142)
205 cd04882 ACT_Bt0572_2 C-termina 44.7 51 0.0011 21.9 4.4 26 169-194 39-64 (65)
206 PF06185 YecM: YecM protein; 42.8 1.3E+02 0.0028 25.8 7.1 76 230-308 34-114 (185)
207 KOG4657 Uncharacterized conser 42.1 55 0.0012 28.7 4.9 39 238-279 144-182 (246)
208 COG3102 Uncharacterized protei 39.4 1.4E+02 0.0031 25.0 6.6 85 99-188 38-130 (185)
209 cd04895 ACT_ACR_1 ACT domain-c 31.8 1.9E+02 0.0041 20.5 5.7 47 173-219 4-55 (72)
210 PF02208 Sorb: Sorbin homologo 30.9 28 0.0006 22.1 1.0 25 229-253 10-34 (47)
211 cd04906 ACT_ThrD-I_1 First of 29.6 96 0.0021 22.5 4.0 28 299-326 40-71 (85)
212 COG3603 Uncharacterized conser 29.5 58 0.0013 25.6 2.8 25 301-325 103-127 (128)
213 cd04897 ACT_ACR_3 ACT domain-c 28.6 1.7E+02 0.0036 21.0 4.9 41 310-350 15-56 (75)
214 PF09066 B2-adapt-app_C: Beta2 27.4 2.4E+02 0.0053 21.5 6.2 68 178-249 36-107 (114)
215 cd07268 Glo_EDI_BRP_like_4 Thi 25.9 3.7E+02 0.0081 22.1 9.5 76 231-308 2-81 (149)
216 KOG4657 Uncharacterized conser 25.7 2.2E+02 0.0049 25.0 5.9 36 108-146 144-179 (246)
217 PF13176 TPR_7: Tetratricopept 25.0 26 0.00056 20.7 0.1 23 233-255 7-29 (36)
218 cd04908 ACT_Bt0572_1 N-termina 24.5 1.2E+02 0.0026 20.5 3.5 24 302-325 42-65 (66)
219 PRK11700 hypothetical protein; 22.9 4.9E+02 0.011 22.3 9.0 78 229-308 38-119 (187)
220 PF09142 TruB_C: tRNA Pseudour 22.1 1.3E+02 0.0028 20.1 3.1 44 307-356 3-46 (56)
221 COG3349 Uncharacterized conser 21.5 1.3E+02 0.0028 30.0 4.2 38 312-351 14-52 (485)
222 PF07063 DUF1338: Domain of un 20.7 1.1E+02 0.0025 28.3 3.5 30 296-325 181-216 (302)
223 COG3254 Uncharacterized conser 20.3 1.8E+02 0.0039 22.3 3.9 35 311-357 27-61 (105)
224 PHA00404 hypothetical protein 20.2 61 0.0013 19.8 1.0 17 7-24 1-17 (42)
No 1
>PLN02300 lactoylglutathione lyase
Probab=100.00 E-value=5.5e-44 Score=329.37 Aligned_cols=278 Identities=91% Similarity=1.487 Sum_probs=231.5
Q ss_pred cccccchHhhhcccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCC
Q 018011 85 AAHESALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY 164 (362)
Q Consensus 85 ~~~~~~~~~~~~~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~ 164 (362)
+.......|..+.|.+|+||.|.|+|++++++||+++|||++..+...+...+...++..++...++.+++....+....
T Consensus 9 ~~~~~~~~~~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~ 88 (286)
T PLN02300 9 AEAEDLLEWPKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKY 88 (286)
T ss_pred hhhhhhhcCCccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCcc
Confidence 34456667877889999999999999999999999999999987665555556677787765555667777654433333
Q ss_pred cCCCCeEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCCCCCcceeeeeeCChHHH
Q 018011 165 DIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRS 244 (362)
Q Consensus 165 ~~g~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~~~~i~~v~l~v~D~~~a 244 (362)
..+.++.|++|.|+|+++++++|+++|+++..+|...+.+..+.+||+||+|+.|||++..+.+.++.|+.|.|+|++++
T Consensus 89 ~~~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~l~~~d~~~a 168 (286)
T PLN02300 89 DIGTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTPEPLCQVMLRVGDLDRS 168 (286)
T ss_pred ccCCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCCCcceeEEEEeCCHHHH
Confidence 45668999999999999999999999999998887777666678899999999999999998999999999999999999
Q ss_pred HHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHHHHHHHHHHcCCee
Q 018011 245 INFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKV 324 (362)
Q Consensus 245 ~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did~~~~~l~~~G~~v 324 (362)
.+||+++|||++......++.+|...++..++......+++..+.+..++..+++.+|++|.|+|+++++++++++|+++
T Consensus 169 ~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v 248 (286)
T PLN02300 169 IKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKI 248 (286)
T ss_pred HHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeE
Confidence 99999999999976555555567777766533334556777665554445567899999999999999999999999999
Q ss_pred ecCCcccCCCCceEEEEECCCCCeEEEEcccccccccC
Q 018011 325 TREPGPLPGINTKITACLDPDGWKTVFVDNVDFLKELE 362 (362)
Q Consensus 325 ~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~~ 362 (362)
+.+|...|+.+++.++|+||||+.|+|++..+|+||||
T Consensus 249 ~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~~~~~ 286 (286)
T PLN02300 249 TREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE 286 (286)
T ss_pred ecCCccCCCCceEEEEEECCCCCEEEEEccchhhhhcC
Confidence 99998888655588999999999999999999999997
No 2
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.5e-37 Score=257.02 Aligned_cols=259 Identities=52% Similarity=0.864 Sum_probs=227.2
Q ss_pred cchHhhhcccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCC-----------CceeEEEEeecCCCceEEEEEee
Q 018011 89 SALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTY 157 (362)
Q Consensus 89 ~~~~~~~~~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~ 157 (362)
...+|..++..+.-|+++.|.|.+++++||+++|||++....++++ +.|+..++++|++..|+.++|+.
T Consensus 6 d~~~~~~~~~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTY 85 (299)
T KOG2943|consen 6 DLLCWMKADTRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTY 85 (299)
T ss_pred hhhhhhhccchheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEe
Confidence 5678999999999999999999999999999999999998877766 67899999999999999999999
Q ss_pred cCCCCCCcCCCCeEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCCCCCcceeeee
Q 018011 158 NYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLR 237 (362)
Q Consensus 158 ~~~~~~~~~g~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~~~~i~~v~l~ 237 (362)
+++...+..|+++.|+.+.++|+-..++.++.-|.+. +....+++.||||+.|+|.+..|++.++.+|+|+
T Consensus 86 NYgV~~YelGndfg~i~I~s~dv~~~ve~v~~p~~~~---------~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~ 156 (299)
T KOG2943|consen 86 NYGVSKYELGNDFGGITIASDDVFSKVEKVNAPGGKG---------SGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLN 156 (299)
T ss_pred ccCccceeccCCcccEEEeHHHHHHHHHHhcCcCCcc---------cceEEEEEECCCCcEEEEeccCCCCCCeEEEEEE
Confidence 9999999999999999999999988888887766532 2345678999999999999999999999999999
Q ss_pred eCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHHHHHHHH
Q 018011 238 VGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAI 317 (362)
Q Consensus 238 v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did~~~~~l 317 (362)
|.|+++++.||.++|||++.+.. .+++.++++++++ ..+|||+++++...+..+.+...+++..+|+..+.+.+
T Consensus 157 VgdL~ks~kyw~~~lgM~ileke----ek~t~~~mgYgd~--q~~LElt~~~~~id~~kg~griafaip~d~~~~l~e~i 230 (299)
T KOG2943|consen 157 VGDLQKSIKYWEKLLGMKILEKE----EKYTRARMGYGDE--QCVLELTYNYDVIDRAKGFGRIAFAIPTDDLPKLQEAI 230 (299)
T ss_pred ehhHHHHHHHHHHHhCcchhhhh----hhhhhhhhccCCc--ceEEEEEeccCcccccccceeEEEeccccccccHHHHH
Confidence 99999999999999999998642 3367788888775 59999999999888888888888888889999999999
Q ss_pred HHcCCeeecCCccc--CCCC-ceEEEEECCCCCeEEEEcccccccccC
Q 018011 318 KLFGGKVTREPGPL--PGIN-TKITACLDPDGWKTVFVDNVDFLKELE 362 (362)
Q Consensus 318 ~~~G~~v~~~p~~~--~~~~-~~~~~~~DPdG~~iel~~~~~~~~~~~ 362 (362)
+..+.++..+.... |+.. .+++.+.|||||+|+|+++.+|+++++
T Consensus 231 K~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~lsk 278 (299)
T KOG2943|consen 231 KSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRKLSK 278 (299)
T ss_pred HHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHHHhc
Confidence 99988877665443 3322 378899999999999999999999864
No 3
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=100.00 E-value=4e-31 Score=246.14 Aligned_cols=234 Identities=21% Similarity=0.240 Sum_probs=168.7
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEe
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V 177 (362)
+++|+||.|.|+|++++++||+++|||++..+.. ..+++.......+..+.+... ...+++|++|.|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~-------~~~g~~hiaf~v 68 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG------QRVYLKAWDEWDHYSVILTEA-------DTAGLDHMAFKV 68 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC------ceEEEEeccccccceEeeccC-------CCCceeEEEEEe
Confidence 6789999999999999999999999999876543 123444322211223333321 234789999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCC---------------------CCCcce
Q 018011 178 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT---------------------PEPLCQ 233 (362)
Q Consensus 178 ~---Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~---------------------~~~i~~ 233 (362)
+ |+++++++|+++|+++...+.....+.++.+||+||+|+.|||.+.... ..+|+|
T Consensus 69 ~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H 148 (303)
T TIGR03211 69 ESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDH 148 (303)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEE
Confidence 8 6999999999999998766543333455789999999999999975421 135899
Q ss_pred eeeeeCChHHHHHHHHHhhCCeeeeeecCCCCce-EEEEeccCCCCcceEEEEeecCCcccccCCCc-eeEEEEEeCC--
Q 018011 234 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKY-TIAMMGYGPEDKNVVLELTYNYGVTDYDKGNA-YAQIAIGTDD-- 309 (362)
Q Consensus 234 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g-~~hiaf~v~D-- 309 (362)
|.|.|+|++++.+||+++|||++......+++.. ...++..+. ....+.+.. ..+.+ .+|++|.|+|
T Consensus 149 i~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~g~~~Hiaf~v~~~~ 219 (303)
T TIGR03211 149 CLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSN--KAHDIAFVG-------DPEPGKLHHVSFFLDSWE 219 (303)
T ss_pred EeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCC--CCcccceec-------CCCCCceEEEEEEcCCHH
Confidence 9999999999999999999999865543333322 223343221 122222211 11234 8999999986
Q ss_pred -HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 310 -VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 310 -id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
+++++++|+++|+++..+|..++...++.+||+|||||.||+..
T Consensus 220 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 220 DVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred HHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 55678899999999988887665444579999999999999984
No 4
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=100.00 E-value=8e-31 Score=243.06 Aligned_cols=234 Identities=24% Similarity=0.325 Sum_probs=169.8
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~ 176 (362)
+|.+|+||.|.|+|++++++||+++|||++..+.. ..+++..........+.+... ...++.|++|.
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~------~~~~~~~~~~~~~~~l~l~~~-------~~~~~~hiaf~ 67 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK------EYIYLRGIEEFQHHSLVLTKA-------PSAALSYIGFR 67 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC------CeEEEeccCcCCceEEEeeeC-------CCcCccEEEEE
Confidence 47899999999999999999999999999876543 234444322221223333321 23478899999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCC---------------CCCCcceeeeee
Q 018011 177 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------TPEPLCQVMLRV 238 (362)
Q Consensus 177 V~---Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~---------------~~~~i~~v~l~v 238 (362)
|+ |+++++++|+++|+++...+. .+..+.+||+||||+.|||+.... .+.+|+||.|.|
T Consensus 68 v~~~~dl~~~~~~l~~~Gv~v~~~~~---~~~~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~i~Hv~l~v 144 (294)
T TIGR02295 68 VSKEEDLDKAADFFQKLGHPVRLVRD---GGQPEALRVEDPFGYPIEFYFEMEKVERLLRRYHRHRGVSPVRLDHFNVFV 144 (294)
T ss_pred eCCHHHHHHHHHHHHhcCCcEEeecC---CCCceEEEEECCCCCEEEEEEchhhcccccccccccCCccceeeeeEEEEe
Confidence 97 699999999999999876442 234588999999999999986321 124689999999
Q ss_pred CChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCC---HHHHHH
Q 018011 239 GDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD---VYKTAE 315 (362)
Q Consensus 239 ~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~D---id~~~~ 315 (362)
+|++++.+||+++|||++......+.+.....++.... .+..+.+.. ..+++.+|++|.|+| ++++++
T Consensus 145 ~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~Hiaf~v~d~~~v~~~~~ 215 (294)
T TIGR02295 145 PDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKG--GVHDIALTN-------GNGPRLHHIAYWVHDPLNIIKACD 215 (294)
T ss_pred CCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCC--CcCceEeec-------CCCCceeeEEEEcCCHHHHHHHHH
Confidence 99999999999999999876543333333333333211 122333321 124689999999998 556689
Q ss_pred HHHHcCCe--eecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 316 AIKLFGGK--VTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 316 ~l~~~G~~--v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
+|+++|++ +...|+.+..+...++|++||+||.||++...
T Consensus 216 ~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 216 ILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred HHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 99999998 66677665544456799999999999998754
No 5
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.98 E-value=5.6e-30 Score=236.42 Aligned_cols=235 Identities=18% Similarity=0.225 Sum_probs=170.0
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEe
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V 177 (362)
|.+|+||+|.|+|++++++||+++|||++..+.+ . ...|+..+... ..+.+.... ..++.|++|.|
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~---~~~~~~~~~~~--~~~~l~~~~-------~~~~~~~~f~V 66 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGE--N---DALYLRLDSRA--HRIAVHPGE-------SDDLAYAGWEV 66 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCC--C---ceEEEEcCCCc--eEEEEEECC-------cCCeeeEeeee
Confidence 5689999999999999999999999999765422 1 23355655332 233343321 23678999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCee--ccCCCEEEEEEECCCCCEEEEEecCCC------------------CCCccee
Q 018011 178 DD---VAKTVELIKAKGGKVTREPGP--VKGGNTVIAFIEDPDGYKFELLERGPT------------------PEPLCQV 234 (362)
Q Consensus 178 ~D---ld~~~~~l~~~G~~~~~~p~~--~~~g~~~~~~~~DPdG~~~el~~~~~~------------------~~~i~~v 234 (362)
+| ++++.++|+++|+++...+.. ...+....+||.|||||.+||...... +.+|+||
T Consensus 67 ~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Hv 146 (286)
T TIGR03213 67 ADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGAVEDFEKPFVSPRAVSGFVTGDQGLGHI 146 (286)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcccccCCCCCCCCCCCCccccCCccccEE
Confidence 98 899999999999998765532 123456789999999999999864311 2268999
Q ss_pred eeeeCChHHHHHHHHHhhCCeeeeeecC--CCC-ceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHH
Q 018011 235 MLRVGDLDRSINFYEQAFGMELLRKRDN--PEY-KYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVY 311 (362)
Q Consensus 235 ~l~v~D~~~a~~FY~~~LG~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did 311 (362)
.|.|+|++++.+||+++|||++...... +++ .+...++..++ .+..+.+.. .....+.+|++|+|+|++
T Consensus 147 ~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~--~~~~~~l~~------~~~~~~~~Hiaf~v~d~~ 218 (286)
T TIGR03213 147 VLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNE--RHHSLAFAA------GPSEKRLNHLMLEVDTLD 218 (286)
T ss_pred EEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECC--CcceEEEec------CCCCCceEEEEEEcCCHH
Confidence 9999999999999999999998755322 212 12234454322 233343322 113457999999998876
Q ss_pred H---HHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 312 K---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 312 ~---~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
+ ++++|+++|+ ....|++++.+..+++|++||+|+.||+....
T Consensus 219 ~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~~ 264 (286)
T TIGR03213 219 DVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWGA 264 (286)
T ss_pred HHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecCc
Confidence 6 8999999999 66667666555568899999999999998643
No 6
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.89 E-value=6.5e-21 Score=180.74 Aligned_cols=222 Identities=23% Similarity=0.329 Sum_probs=150.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCC------CcCCCCeEE
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGH 172 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~------~~~g~~~~h 172 (362)
.+++||.|.|+|++++++||++.|||+......... ......++.|+ ..+++........ ..+|++++|
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~-~~~~~~~~~G~----~~l~L~~~~~~~s~~~~~~~~hg~gv~~ 75 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHR-EKASHVLRQGQ----INFVLTAPYSSDSPAADFAAKHGDGVKD 75 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCC-ceeEEEEEeCC----EEEEEecCCCCCchHHHHHHhCCCceEE
Confidence 378999999999999999999999999987632111 11222333322 3455554322111 126789999
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCC---------------------C----
Q 018011 173 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP---------------------T---- 227 (362)
Q Consensus 173 iaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~---------------------~---- 227 (362)
+||+|+|+++++++++++|+++..+|.....|.....-++.++|..+-|++... .
T Consensus 76 iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (353)
T TIGR01263 76 VAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGYKGSFYPGFFESLLDAALHEPPPGVG 155 (353)
T ss_pred EEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCCCCCCCCCccccccccccccCCCCCC
Confidence 999999999999999999999987765431122222223444444444443210 0
Q ss_pred CCCcceeeeeeC--ChHHHHHHHHHhhCCeeeeeecCCC---CceEEEEeccCCCCcceEEEEeecCCc---c------c
Q 018011 228 PEPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPE---YKYTIAMMGYGPEDKNVVLELTYNYGV---T------D 293 (362)
Q Consensus 228 ~~~i~~v~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~l~l~~~~~~---~------~ 293 (362)
-..|+||+++|. |++++++||+++|||++....+... +....++... .....++|...... . +
T Consensus 156 ~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~---~g~~~i~L~ep~~~~~~s~i~~fl~ 232 (353)
T TIGR01263 156 LIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASP---DGKVKIPLNEPASGKDKSQIEEFLE 232 (353)
T ss_pred eEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECC---CCcEEEEEeccCCCCCCCHHHHHHH
Confidence 124899999999 9999999999999999876554321 2122333321 22466777653111 1 1
Q ss_pred ccCCCceeEEEEEeCCHHHHHHHHHHcCCeeecCC
Q 018011 294 YDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREP 328 (362)
Q Consensus 294 ~~~g~g~~hiaf~v~Did~~~~~l~~~G~~v~~~p 328 (362)
...|.|++||||.|+|+++++++|+++|++++..|
T Consensus 233 ~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 233 FYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 23578999999999999999999999999999877
No 7
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.86 E-value=8.4e-20 Score=159.37 Aligned_cols=194 Identities=23% Similarity=0.338 Sum_probs=139.0
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~ 176 (362)
..+.++-|+|.|+|++++..||++++|+++..+.. ....+..++. .-+.++..++.... .....|+.|+||.
T Consensus 7 ~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg~-~LL~L~q~~~a~~~-~~~~aGLyH~AfL 78 (265)
T COG2514 7 TPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGGT-PLLTLEQFPDARRP-PPRAAGLYHTAFL 78 (265)
T ss_pred CCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCCE-EEEEEEeCCCCCCC-Cccccceeeeeee
Confidence 45689999999999999999999999999998876 4456666654 33333333332222 2356699999999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCC--------------------------
Q 018011 177 VDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT-------------------------- 227 (362)
Q Consensus 177 V~D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~-------------------------- 227 (362)
+++ +..+..++...|..+. +.. +......+||.||+||-||+..++|.
T Consensus 79 lP~r~~L~~~l~hl~~~~~~l~-Ga~--DH~vSEAlYl~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~~ 155 (265)
T COG2514 79 LPTREDLARVLNHLAEEGIPLV-GAS--DHLVSEALYLEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEEA 155 (265)
T ss_pred cCCHHHHHHHHHHHHhcCCccc-ccC--cchhheeeeecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhhc
Confidence 996 8888889999999886 223 33467889999999999999987541
Q ss_pred ----------CCCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccc---
Q 018011 228 ----------PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDY--- 294 (362)
Q Consensus 228 ----------~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~--- 294 (362)
...|+||.|.|.|++++.+||+++|||++... .+. -.|+..+ +.++.+.+.........
T Consensus 156 ~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~--~~~----A~F~a~G--~YHHHia~N~W~s~~~~~~~ 227 (265)
T COG2514 156 TKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTAR--GPS----ALFLASG--DYHHHLAANTWNSRGARPRN 227 (265)
T ss_pred cccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeec--CCc----ceEEecC--CcceeEEEeccccCCCCCCC
Confidence 12479999999999999999999999999765 221 2345544 34666666543222111
Q ss_pred cCCCceeEEEEEeCC
Q 018011 295 DKGNAYAQIAIGTDD 309 (362)
Q Consensus 295 ~~g~g~~hiaf~v~D 309 (362)
....|+..+.+.+.+
T Consensus 228 ~~~~GLa~~~i~~~~ 242 (265)
T COG2514 228 ANASGLAWLEIHTPD 242 (265)
T ss_pred CCCCCcceEEEEcCC
Confidence 123466667776665
No 8
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.83 E-value=3.1e-19 Score=148.81 Aligned_cols=136 Identities=65% Similarity=1.097 Sum_probs=104.8
Q ss_pred hcccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEE
Q 018011 95 KKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFG 174 (362)
Q Consensus 95 ~~~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hia 174 (362)
+..+++|+||.|.|+|++++++||+++|||++..+...+...+..+++..+.......+++...........+.++.|++
T Consensus 12 ~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~ 91 (150)
T TIGR00068 12 KTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIA 91 (150)
T ss_pred ccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEE
Confidence 44578999999999999999999999999998776554444455566766544444456655433222233456899999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCCCCC
Q 018011 175 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEP 230 (362)
Q Consensus 175 f~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~~~~ 230 (362)
|.|+|+++++++|.++|+++..+|+..+.+..+.+||+||+|+.|||++......+
T Consensus 92 f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 147 (150)
T TIGR00068 92 IGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTKDG 147 (150)
T ss_pred EecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchhhh
Confidence 99999999999999999999888766666667788999999999999987654433
No 9
>PLN02367 lactoylglutathione lyase
Probab=99.83 E-value=5.1e-19 Score=154.33 Aligned_cols=128 Identities=40% Similarity=0.697 Sum_probs=103.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCC---------------ceEEEEEeecCCCC
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SHFVIELTYNYGVD 162 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~l~l~~~~~~~ 162 (362)
-..+.|+.|+|.|++++++||+++|||++..+.+.++.++.++|+.+++.. ....|||.++.+..
T Consensus 73 ~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e 152 (233)
T PLN02367 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTE 152 (233)
T ss_pred CcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCC
Confidence 358999999999999999999999999999998888888889998754311 12468888754433
Q ss_pred ------CCcCC----CCeEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCC
Q 018011 163 ------KYDIG----TGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 227 (362)
Q Consensus 163 ------~~~~g----~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~ 227 (362)
.+..+ .|++||||.|+|+++++++|+++|+++..+|.... ..+.+|++||||++|||++....
T Consensus 153 ~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~--~~riaFIkDPDGn~IEL~e~~~~ 225 (233)
T PLN02367 153 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGK--MKGIAFIKDPDGYWIEIFDLKTI 225 (233)
T ss_pred ccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCC--ceEEEEEECCCCCEEEEEecccc
Confidence 13333 48999999999999999999999999987765432 25678999999999999987543
No 10
>PLN02367 lactoylglutathione lyase
Probab=99.83 E-value=1.3e-19 Score=158.07 Aligned_cols=127 Identities=32% Similarity=0.569 Sum_probs=105.8
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCC---------------CcceEEEEeecCCccc-
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPE---------------DKNVVLELTYNYGVTD- 293 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~l~l~~~~~~~~- 293 (362)
.+.|++|+|.|++++++||+++|||++..+.+.+++++.++++++++. .....|||.++.+...
T Consensus 75 ~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~~ 154 (233)
T PLN02367 75 IMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTESD 154 (233)
T ss_pred EEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCcc
Confidence 589999999999999999999999999988888888899999975331 1246899998776542
Q ss_pred -----ccCC----CceeEEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccccc
Q 018011 294 -----YDKG----NAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 358 (362)
Q Consensus 294 -----~~~g----~g~~hiaf~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 358 (362)
+..+ .|+.||+|.|+|+++++++|+++|++++..|...++ .+++|++|||||+|||+|.+...
T Consensus 155 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~--~riaFIkDPDGn~IEL~e~~~~~ 226 (233)
T PLN02367 155 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKM--KGIAFIKDPDGYWIEIFDLKTIG 226 (233)
T ss_pred ccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCc--eEEEEEECCCCCEEEEEeccccc
Confidence 4333 489999999999999999999999999987764333 47899999999999999987643
No 11
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.81 E-value=4.3e-18 Score=160.41 Aligned_cols=222 Identities=20% Similarity=0.297 Sum_probs=156.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCC--ceeEEEEeecCCCceEEEEEeecCCC-----------------
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE--KYTNAFLGYGPEDSHFVIELTYNYGV----------------- 161 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~l~l~~~~~~----------------- 161 (362)
++||.+.|.|..++..||+..|||+.+.......+ ......++.|. +.+.+......
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~----i~fv~~~~~~~~~~~~~~~~~~~~~~~~ 76 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGD----LVFLFTAPYSPKIGAGDDDPASTAPHPS 76 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCC----EEEEEeCCCCCccccccccccccccccc
Confidence 58999999999999999999999999887653222 23333444332 23333332101
Q ss_pred --CC----C--cCCCCeEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccC----CCEEEEEEECCCCCEEEEEecCC---
Q 018011 162 --DK----Y--DIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG----GNTVIAFIEDPDGYKFELLERGP--- 226 (362)
Q Consensus 162 --~~----~--~~g~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~----g~~~~~~~~DPdG~~~el~~~~~--- 226 (362)
.. + .+|+++.-+||+|+|++++++++.++|++...+|..... |...+.-++-++|.++-|+++..
T Consensus 77 ~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~~~~~ 156 (398)
T PLN02875 77 FSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYKGFDG 156 (398)
T ss_pred cCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccCCCCC
Confidence 00 1 278899999999999999999999999998877655422 22445556777777777776420
Q ss_pred -----------------CC---CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCC-----ceEEEEeccCCCCcce
Q 018011 227 -----------------TP---EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY-----KYTIAMMGYGPEDKNV 281 (362)
Q Consensus 227 -----------------~~---~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~ 281 (362)
.+ ..|+||+++|++++.+..||+++|||+.....+.++. +.....+..+ +...
T Consensus 157 ~~f~p~f~~~~~~~~~~~~~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp--~g~v 234 (398)
T PLN02875 157 AKFLPGYEPVESSSSFPLDYGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASN--NEMV 234 (398)
T ss_pred CccCCCcccccccccCCCCCCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcC--CCcE
Confidence 01 2589999999999999999999999998765443321 1233334432 2346
Q ss_pred EEEEeecCCc----c------cccCCCceeEEEEEeCCHHHHHHHHHHc----CCeeecCC
Q 018011 282 VLELTYNYGV----T------DYDKGNAYAQIAIGTDDVYKTAEAIKLF----GGKVTREP 328 (362)
Q Consensus 282 ~l~l~~~~~~----~------~~~~g~g~~hiaf~v~Did~~~~~l~~~----G~~v~~~p 328 (362)
.++|...... . ....|+|++||||.|+||.+++++|+++ |++++..|
T Consensus 235 ~ipLnEP~~~~~~~SqI~eFL~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 235 LLPLNEPTFGTKRKSQIQTYLEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred EEEeccCCCCCCCcChHHHHHHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 6777664311 1 1256799999999999999999999999 99999865
No 12
>PRK10291 glyoxalase I; Provisional
Probab=99.81 E-value=1.7e-18 Score=140.50 Aligned_cols=124 Identities=61% Similarity=1.076 Sum_probs=96.5
Q ss_pred EEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCHHHHHH
Q 018011 106 YRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVE 185 (362)
Q Consensus 106 l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dld~~~~ 185 (362)
|.|.|++++++||+++|||++......+...+..+++..++......+++....+......+.+++|+||.|+|++++++
T Consensus 2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~~ 81 (129)
T PRK10291 2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACE 81 (129)
T ss_pred EEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHHH
Confidence 78999999999999999999887665555566777777655433445666544333344456689999999999999999
Q ss_pred HHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCCCC
Q 018011 186 LIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPE 229 (362)
Q Consensus 186 ~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~~~ 229 (362)
+|+++|+++..++...+.+..+.+||+||||++|||++....+.
T Consensus 82 ~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~~~~ 125 (129)
T PRK10291 82 KIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGR 125 (129)
T ss_pred HHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcccccc
Confidence 99999999987766665555677889999999999999764443
No 13
>PRK10291 glyoxalase I; Provisional
Probab=99.81 E-value=9.7e-19 Score=141.93 Aligned_cols=122 Identities=52% Similarity=0.949 Sum_probs=96.9
Q ss_pred eeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHHHHH
Q 018011 235 MLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTA 314 (362)
Q Consensus 235 ~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did~~~ 314 (362)
+|.|.|++++++||+++|||++......++..+.++++..++......+++..+.+..++..+.+..|++|.|+|+++++
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~ 80 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEAC 80 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHH
Confidence 47899999999999999999987665556666777777655433345677765544444445678999999999999999
Q ss_pred HHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 315 EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 315 ~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
++|+++|+++..++.+.+++..++++|+|||||.|||++.++
T Consensus 81 ~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 81 EKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred HHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 999999999998776666544467889999999999999775
No 14
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.79 E-value=5e-18 Score=141.51 Aligned_cols=132 Identities=48% Similarity=0.872 Sum_probs=101.1
Q ss_pred CCCCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEE
Q 018011 227 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 306 (362)
Q Consensus 227 ~~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~ 306 (362)
...++.|+.|.|.|++++.+||+++|||++....+.++..+.+.+++.+.......+++....+..+...+.+..|++|.
T Consensus 14 ~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~ 93 (150)
T TIGR00068 14 KKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIG 93 (150)
T ss_pred CCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEe
Confidence 45689999999999999999999999999876555555545556665433323455666543333233445688999999
Q ss_pred eCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccccc
Q 018011 307 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 358 (362)
Q Consensus 307 v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 358 (362)
|+|+++++++|.++|+++..+|...+++..+.+||+|||||.|||++..+..
T Consensus 94 v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 145 (150)
T TIGR00068 94 VDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKSTK 145 (150)
T ss_pred cCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCchh
Confidence 9999999999999999999888666655457889999999999999987543
No 15
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.78 E-value=1.3e-17 Score=142.70 Aligned_cols=127 Identities=39% Similarity=0.679 Sum_probs=97.9
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCC---------------ceEEEEEeecCCCC
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SHFVIELTYNYGVD 162 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~l~l~~~~~~~ 162 (362)
-.++.|+.|.|.|++++++||+++|||++..+...+..++..+++.++... ....|+|..+....
T Consensus 25 ~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~ 104 (185)
T PLN03042 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTE 104 (185)
T ss_pred CcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCc
Confidence 468999999999999999999999999998887766667778887654211 12357777543221
Q ss_pred C------Cc----CCCCeEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCC
Q 018011 163 K------YD----IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (362)
Q Consensus 163 ~------~~----~g~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~ 226 (362)
. +. .+.|++|++|+|+|+++++++|+++|+++...|.... ..+.+||+||||++|||++...
T Consensus 105 ~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~--~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 105 SDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGK--MKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred ccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCC--ceeEEEEECCCCCEEEEEECCC
Confidence 1 21 1248999999999999999999999999987664322 3567888999999999998753
No 16
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.78 E-value=1.1e-17 Score=138.14 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=89.0
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCc-eeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEK-YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGI 175 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf 175 (362)
.+++|+||+|.|+|++++.+||+++|||++..+...+.+. ....|+.++...+ .+.+... .+.+++|+||
T Consensus 3 ~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~~h--~~~~~~~-------~~~~~~Hiaf 73 (143)
T cd07243 3 GAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNKPH--DIAFVGG-------PDGKLHHFSF 73 (143)
T ss_pred CCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCCcc--eEEEecC-------CCCCceEEEE
Confidence 3678999999999999999999999999987765322222 2345666544322 2333221 1348999999
Q ss_pred EeCCHHH---HHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 176 AVDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 176 ~V~Dld~---~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
.|+|+++ +.++|+++|+++..+|..+..+..+++||+|||||.|||...
T Consensus 74 ~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 74 FLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 9999777 567999999999877776554456789999999999999864
No 17
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.77 E-value=9.8e-18 Score=143.43 Aligned_cols=126 Identities=30% Similarity=0.562 Sum_probs=99.5
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCC---------------cceEEEEeecCCccc
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPED---------------KNVVLELTYNYGVTD 293 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~l~l~~~~~~~~ 293 (362)
-.+.|++|.|.|++++++||+++|||++..+.+.++.++.+++++++... ....|+|.++.+...
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 36899999999999999999999999998777667777888887643211 245889987544321
Q ss_pred ------cc----CCCceeEEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 294 ------YD----KGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 294 ------~~----~g~g~~hiaf~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
+. .+.|+.|++|.|+|+++++++|+++|+++...|....+ .+++|++|||||.|||++...
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~--~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKM--KGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCc--eeEEEEECCCCCEEEEEECCC
Confidence 21 12489999999999999999999999999877653222 467899999999999999764
No 18
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=1.4e-17 Score=133.62 Aligned_cols=114 Identities=33% Similarity=0.632 Sum_probs=90.1
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCC-----------CceEEEEeccCCCCcceEEEEeecCCcccccCCC
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGN 298 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~ 298 (362)
++.|++|.|.|+++|++||+++|||++.++.+.++ +.+.++++...++..+..++|.++++..+++.|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 57899999999999999999999999887665554 4555566655444457899999988766666665
Q ss_pred ceeEEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 299 AYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 299 g~~hiaf~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
+ |++|.|++. ++.++|+++|+++...|. .+++++||||++|||++
T Consensus 82 ~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-------~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 D--FLGITIHSK-QAVSNAKKHNWPVTEVED-------GVYEVKAPGGYKFYLID 126 (127)
T ss_pred C--EEEEEEECH-HHHHHHHHCCCceecCCC-------CEEEEECCCCCEEEEec
Confidence 5 666777766 566999999999886543 27899999999999986
No 19
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.77 E-value=2.3e-17 Score=131.84 Aligned_cols=120 Identities=54% Similarity=0.938 Sum_probs=90.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCC-CCCcCCCCeEEEEEEeCC
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIAVDD 179 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~~~~g~~~~hiaf~V~D 179 (362)
|.||.|.|+|++++++||+++|||++......++..+..+++..++......+++...... .....+.++.|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5899999999999999999999999887654444455667776654112233444433221 222344588999999999
Q ss_pred HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEE
Q 018011 180 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (362)
Q Consensus 180 ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~ 222 (362)
+++++++|+++|+++..+|... +..+.+||+||+|+++||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 9999999999999999887655 3467789999999999985
No 20
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.76 E-value=1.6e-17 Score=136.08 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=93.8
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCccc------ccCCCceeEEE
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD------YDKGNAYAQIA 304 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~------~~~g~g~~hia 304 (362)
|+|+.|.|.|++++++||+++|||++......++ ....++.. ....+.+........ ...+.+.+|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~----g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQ----GDINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEc----CCEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 5899999999999999999999999876543321 22333432 145555543221111 12456899999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccccccccc
Q 018011 305 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFLKEL 361 (362)
Q Consensus 305 f~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~~ 361 (362)
|.|+|+++++++|+++|++++.+|...+++ .+.++++||||+.|||++++...+.|
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~-~~~~~i~dp~G~~ie~~~~~~~~~~~ 130 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEPGE-LKIAAIKGYGDSLHTLVDRKGYKGPF 130 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecCCe-EEEEEEeccCCcEEEEEecCCCCCcc
Confidence 999999999999999999999998875553 58999999999999999988775543
No 21
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.76 E-value=2e-17 Score=132.71 Aligned_cols=115 Identities=30% Similarity=0.324 Sum_probs=86.4
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEe
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V 177 (362)
+++|+||.|.|+|++++++||+++|||++..... . ..+++.......+..+.+... ...+++|++|.|
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~---~~~~~~~~~~~~~~~~~l~~~-------~~~~~~hiaf~v 69 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--Q---GRVYLKAWDEFDHHSIVLREA-------DTAGLDFMGFKV 69 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--C---ceEEEEccCCCcccEEEeccC-------CCCCeeEEEEEe
Confidence 6799999999999999999999999999876542 1 124454422222233444321 234789999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 178 D---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 178 ~---Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+ |++++.++|+++|+++...|.....+.++.+||+|||||+||+...
T Consensus 70 ~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 70 LDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 8 7999999999999998876554444556789999999999999865
No 22
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=4.3e-17 Score=134.40 Aligned_cols=123 Identities=26% Similarity=0.338 Sum_probs=89.3
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCC-----------CceeEEEEeecCCCceEEEEEeecC---CCC-
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNY---GVD- 162 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~~~---~~~- 162 (362)
+.+|+||.|.|+|++++++||++ |||++..+...++ ......++..... ...+++.... ...
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~iel~~~~~~~~~~~ 77 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDG--HSRLELSKFHHPAVIAD 77 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCC--CceEEEEEecCCCCcCc
Confidence 46899999999999999999998 9998865543221 1233444543222 3345655421 111
Q ss_pred ---CCcCCCCeEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 163 ---KYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 163 ---~~~~g~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
....+.|+.|+||.|+|+++++++|+++|+++..++.... .+.+.+||+||||+.|||++.
T Consensus 78 ~~~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~-~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 78 HRPAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYE-NSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecC-CCeEEEEEECCCCCEEEeeec
Confidence 1123458999999999999999999999999987665444 357789999999999999974
No 23
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.76 E-value=3.6e-17 Score=133.64 Aligned_cols=118 Identities=25% Similarity=0.317 Sum_probs=89.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeC
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~ 178 (362)
.+|+||.|.|+|++++++||+++|||++...... ...|+..++...+..+.+..... ...+++|++|.|+
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~-----~~~~~~~~~~~~~~~i~l~~~~~-----~~~g~~hiaf~v~ 71 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG-----RGAFLRAAGGGDHHNLFLIKTPA-----PMAGFHHAAFEVG 71 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC-----cEEEEECCCCCCCcEEEEecCCC-----CCCcceEEEEEeC
Confidence 5899999999999999999999999998765431 24566654322233444443211 1358999999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCC
Q 018011 179 DVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (362)
Q Consensus 179 Dld~~~---~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~ 226 (362)
|++++. ++|+++|+++.++|+..+.+..+++||+||+|++|||.....
T Consensus 72 d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~ 122 (134)
T cd08360 72 DIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMD 122 (134)
T ss_pred CHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccc
Confidence 977666 599999999887776666555677999999999999997643
No 24
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.76 E-value=1.1e-17 Score=140.01 Aligned_cols=119 Identities=25% Similarity=0.376 Sum_probs=90.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCC-CCceeEEEEeecCCCc---eEEEEEeecCCCCCCcCCCCeEEEEE
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP-EEKYTNAFLGYGPEDS---HFVIELTYNYGVDKYDIGTGFGHFGI 175 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~~---~~~l~l~~~~~~~~~~~g~~~~hiaf 175 (362)
+|+||.|.|+|++++++||+++||+++..+...+ .......|+.++.... +..+.+.. ..+.+++|+||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-------~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQ-------GPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhc-------CCCCceeEEEE
Confidence 5899999999999999999999999987664433 2334567777643211 00111111 12468999999
Q ss_pred EeCCHHHHH---HHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecC
Q 018011 176 AVDDVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 176 ~V~Dld~~~---~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
.|+|++++. ++|+++|+++.++++.+..+...++||+||+|+.|||....
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 999999886 89999999999888877666677889999999999999664
No 25
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.76 E-value=2.3e-17 Score=152.27 Aligned_cols=157 Identities=20% Similarity=0.264 Sum_probs=110.9
Q ss_pred CccCCCccccccccccccccccccccccccccccc--chHhhhcccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecC
Q 018011 55 GLRAAKPLRGDVNSTGVASSAGNAAQASTSAAHES--ALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDI 132 (362)
Q Consensus 55 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~ 132 (362)
+.+++.|.|++|+.+++..+.... ...++... ...+ ...+.+|+||.|.|+|++++.+||+++|||++..+...
T Consensus 99 ~~~~~~f~DPdGn~lEl~~~~~~~---~~~~~~~~~~~~~~-~~~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~ 174 (286)
T TIGR03213 99 VLGLIKFTDPGGNPLEIYYGAVED---FEKPFVSPRAVSGF-VTGDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDL 174 (286)
T ss_pred ceEEEEEECCCCCEEEEEEccccc---CCCCCCCCCCCCcc-ccCCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcc
Confidence 456789999999999998762211 11111110 0012 23478999999999999999999999999998776432
Q ss_pred CC--C-ceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCHHH---HHHHHHHcCCeeecCCeeccCCCE
Q 018011 133 PE--E-KYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK---TVELIKAKGGKVTREPGPVKGGNT 206 (362)
Q Consensus 133 ~~--~-~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dld~---~~~~l~~~G~~~~~~p~~~~~g~~ 206 (362)
+. + .+..+|+.+++..+. +.+... ....+++|++|+|+|+++ ++++|+++|+ ....++.++.++.
T Consensus 175 ~~~~g~~~~~~~l~~~~~~~~--~~l~~~------~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~ 245 (286)
T TIGR03213 175 PAGPGVTVRPYFLHCNERHHS--LAFAAG------PSEKRLNHLMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHM 245 (286)
T ss_pred cCCCCCcceEEEEEECCCcce--EEEecC------CCCCceEEEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCe
Confidence 21 1 123567777654332 333221 124589999999998666 8999999999 6667777766778
Q ss_pred EEEEEECCCCCEEEEEec
Q 018011 207 VIAFIEDPDGYKFELLER 224 (362)
Q Consensus 207 ~~~~~~DPdG~~~el~~~ 224 (362)
.++||+||+|++||+.+.
T Consensus 246 ~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 246 VSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EEEEEECCCCcEEEeecC
Confidence 899999999999999874
No 26
>PRK11478 putative lyase; Provisional
Probab=99.75 E-value=4.6e-17 Score=131.76 Aligned_cols=122 Identities=22% Similarity=0.334 Sum_probs=84.1
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCC-CceeEEEEeecCCCceEEEEEeec-CCC--CCCcCCCCeEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-EKYTNAFLGYGPEDSHFVIELTYN-YGV--DKYDIGTGFGH 172 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~l~l~~~-~~~--~~~~~g~~~~h 172 (362)
.+.+|+||.|.|+|++++++||+++|||++..+...+. ..+. ..+..++ ...+++... .+. .......+++|
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~-~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~g~~h 78 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWK-GDLALNG---QYVIELFSFPFPPERPSRPEACGLRH 78 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccce-eeEecCC---CcEEEEEEecCCCCCCCCCCCCceeE
Confidence 36789999999999999999999999999865432211 1111 1222222 224454431 111 11112357899
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 173 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 173 iaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
++|.|+|+++++++|+++|+++...+.. +.++.+++||+||+|+.|||++
T Consensus 79 i~f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 79 LAFSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999999999998643322 2234678899999999999986
No 27
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.75 E-value=4.6e-17 Score=130.04 Aligned_cols=120 Identities=43% Similarity=0.772 Sum_probs=92.1
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCc-ccccCCCceeEEEEEeCC
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV-TDYDKGNAYAQIAIGTDD 309 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~-~~~~~g~g~~hiaf~v~D 309 (362)
+.|+.+.|+|++++.+||+++||+++......++..+..+++.......+..+++....+. .....+.+..|++|.|+|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 5799999999999999999999999876654444445666666432113456666554332 223344578999999999
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 018011 310 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 352 (362)
Q Consensus 310 id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~ 352 (362)
+++++++++++|+++..+|.... .++++||+|||||.|||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDGG--MKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccCC--CceEEEEECCCCCEEEeC
Confidence 99999999999999999887653 357899999999999985
No 28
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.75 E-value=5.5e-17 Score=133.43 Aligned_cols=118 Identities=22% Similarity=0.417 Sum_probs=89.5
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~ 176 (362)
||.+|+||.|.|+|++++++||+++|||++..+.. ..+++..++ ..+.+...........+.+++|++|.
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~g----~~l~l~~~~~~~~~~~~~~~~hiaf~ 70 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLNG----LWIALNEEKDIPRNEIHQSYTHIAFS 70 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecCC----eEEEeeccCCCCCccCCCCeeEEEEE
Confidence 67899999999999999999999999999876532 335555433 23333332222222234478899999
Q ss_pred eC--CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecC
Q 018011 177 VD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 177 V~--Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
++ |+++++++|+++|+++..++..... ..+.+||+|||||+|||.+..
T Consensus 71 v~~~dv~~~~~~l~~~G~~i~~~~~~~~~-~~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 71 IEEEDFDHWYQRLKENDVNILPGRERDER-DKKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred ecHHHHHHHHHHHHHCCceEcCCccccCC-CceEEEEECCCCCEEEEEeCC
Confidence 98 8999999999999998766655544 468899999999999999764
No 29
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=8.8e-17 Score=129.03 Aligned_cols=115 Identities=45% Similarity=0.890 Sum_probs=87.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCC-----------CceeEEEEeecCCCceEEEEEeecCCCCCCcCC
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPE-----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIG 167 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~-----------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g 167 (362)
.++.|+.|.|+|+++|++||+++|||++..+.+.++ +.+..+++.+++...+..++|..+.+...+..|
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g 80 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELG 80 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCC
Confidence 378999999999999999999999999887765554 334445666554445668899986665555555
Q ss_pred CCeEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 168 TGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 168 ~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
.+ |++|.|++. ++.++|+++|+++...|. + ++|++||||+.|||+.
T Consensus 81 ~~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~---~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 81 ND--FLGITIHSK-QAVSNAKKHNWPVTEVED----G---VYEVKAPGGYKFYLID 126 (127)
T ss_pred CC--EEEEEEECH-HHHHHHHHCCCceecCCC----C---EEEEECCCCCEEEEec
Confidence 55 677777776 455999999998875443 2 6899999999999974
No 30
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.75 E-value=3.4e-17 Score=152.44 Aligned_cols=158 Identities=16% Similarity=0.202 Sum_probs=108.7
Q ss_pred CccCCCcccccccccccccccccccc----cccccccccchHhhhcccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEe
Q 018011 55 GLRAAKPLRGDVNSTGVASSAGNAAQ----ASTSAAHESALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKR 130 (362)
Q Consensus 55 g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~ 130 (362)
+++...|.|++|+.+++.....+... ..+.+++.. +....+++|+||.|.|+|++++++||+++|||++..+.
T Consensus 99 ~g~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~ 175 (303)
T TIGR03211 99 VGRRVRFTLPSGHTMELYAEKEYVGELVGGLNPDPWPDP---LRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQV 175 (303)
T ss_pred cceEEEEECCCCCEEEEEEccccccccccccCCcccccc---cCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeE
Confidence 34678999999999999976332110 011112211 22334789999999999999999999999999987765
Q ss_pred cCCCCce-eEEEEeecCCCceEEEEEeecCCCCCCcCCCC-eEEEEEEeCC---HHHHHHHHHHcCCeeecCCeeccCCC
Q 018011 131 DIPEEKY-TNAFLGYGPEDSHFVIELTYNYGVDKYDIGTG-FGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGN 205 (362)
Q Consensus 131 ~~~~~~~-~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~-~~hiaf~V~D---ld~~~~~l~~~G~~~~~~p~~~~~g~ 205 (362)
..+.+.. ...|+..+...+. +.+... .+.+ ++|+||.|+| ++++.++|+++|+++.++|..++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~ 246 (303)
T TIGR03211 176 VLGDGKEQAAAWLSVSNKAHD--IAFVGD-------PEPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITR 246 (303)
T ss_pred EcCCCcEEEEEEEEcCCCCcc--cceecC-------CCCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCC
Confidence 4333322 3455554432221 222111 1234 9999999997 56678899999999988887666445
Q ss_pred EEEEEEECCCCCEEEEEec
Q 018011 206 TVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 206 ~~~~~~~DPdG~~~el~~~ 224 (362)
.+++||+||+|+++|+...
T Consensus 247 ~~~~y~~DPdG~~iEl~~~ 265 (303)
T TIGR03211 247 GQTIYFFDPSGNRNETFGG 265 (303)
T ss_pred ceEEEEECCCCCEEEEecC
Confidence 6789999999999999844
No 31
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.74 E-value=1.4e-16 Score=130.61 Aligned_cols=121 Identities=22% Similarity=0.260 Sum_probs=91.1
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCC------CcCCCCeEEEE
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHFG 174 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~------~~~g~~~~hia 174 (362)
|+|+.|.|+|++++++||+++|||++......+ .....++..+ ...+++........ ...+.++.|++
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g----~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia 74 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG----DINFVLNSPLNSFAPVADFLEKHGDGVCDVA 74 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC----CEEEEEecCCCCCCchHHHHHhcCCceEEEE
Confidence 689999999999999999999999988765422 1223334322 23445543221111 12456899999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCCC
Q 018011 175 IAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 228 (362)
Q Consensus 175 f~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~~ 228 (362)
|.|+|+++++++|+++|+++..+|...+ +..+.+|++||||++|||++.....
T Consensus 75 ~~V~Dvda~~~~l~~~G~~v~~~p~~~~-~~~~~~~i~dp~G~~ie~~~~~~~~ 127 (136)
T cd08342 75 FRVDDAAAAYERAVARGAKPVQEPVEEP-GELKIAAIKGYGDSLHTLVDRKGYK 127 (136)
T ss_pred EEeCCHHHHHHHHHHcCCeEccCceecC-CeEEEEEEeccCCcEEEEEecCCCC
Confidence 9999999999999999999998887744 4678899999999999999976553
No 32
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.73 E-value=1.3e-16 Score=133.61 Aligned_cols=121 Identities=21% Similarity=0.336 Sum_probs=92.0
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCC---CCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP---EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHF 173 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~---~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hi 173 (362)
..++|+||.|.|+|++++++||+++|||++......+ +.....+++.++...+. +.+.... .+.+++|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--i~~~~~~------~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHS--LALAEGP------GPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCC--EEEEcCC------CCceeEEE
Confidence 3568999999999999999999999999987654322 11335667776543333 3332211 13589999
Q ss_pred EEEeCCH---HHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecC
Q 018011 174 GIAVDDV---AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 174 af~V~Dl---d~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
+|.|+|+ ++++++|+++|+++..+++.++.+..+++|++||+|++|||....
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 9999874 568999999999998887776666678899999999999998664
No 33
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.73 E-value=2.2e-16 Score=126.47 Aligned_cols=121 Identities=29% Similarity=0.377 Sum_probs=84.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEee--cCCCC-CCcCCCCeEEEEE
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTY--NYGVD-KYDIGTGFGHFGI 175 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~--~~~~~-~~~~g~~~~hiaf 175 (362)
.+|+||.|.|+|++++++||+++|||++......++.......+... ... .+++.. ..... ....+.+++|++|
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~--~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLN-GGY--QLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecC-CCc--EEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 58999999999999999999999999987654332221111222221 222 233332 11111 1113458899999
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 176 AVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 176 ~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
.|+|++++.++|+++|+++..++.... +..+++|++||+|+.|||++
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDEF-TGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccCC-CceEEEEEECCCCCEEEecC
Confidence 999999999999999999876553333 34668999999999999975
No 34
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.73 E-value=1.6e-16 Score=127.52 Aligned_cols=119 Identities=25% Similarity=0.412 Sum_probs=85.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCC---CcCCCCeEEEEEE
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK---YDIGTGFGHFGIA 176 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~---~~~g~~~~hiaf~ 176 (362)
+|+||.|.|+|++++++||+++|||++......+...+...|+..++ + ..+++........ .....|+.|+||.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD-G--ARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC-C--cEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 58999999999999999999999999865543333334455666542 2 2345543221111 1233588999999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEE
Q 018011 177 VDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (362)
Q Consensus 177 V~D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~ 222 (362)
|+| +++++++|+++|+++..+|...+.| .+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEeC
Confidence 964 8999999999999998777555444 34567999999999983
No 35
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.72 E-value=2.3e-16 Score=133.19 Aligned_cols=125 Identities=30% Similarity=0.352 Sum_probs=86.4
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEe----cC--------------CCCceeEEEEeecCCCceEEEEEeecC
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKR----DI--------------PEEKYTNAFLGYGPEDSHFVIELTYNY 159 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~----~~--------------~~~~~~~~~l~~g~~~~~~~l~l~~~~ 159 (362)
.++|+||.|.|+|++++++||+++|||++..+. .. .......+++..++. ..+++....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~---~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDR---IGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCC---CcEEEEecc
Confidence 368999999999999999999999999875321 10 001244556654432 235555532
Q ss_pred CCCCC-c----CCCCeEEEEEEeCCHHHHHHHHHHcCCeeecCC-eec-cC-CCEEEEEEECCCCCEEEEEecC
Q 018011 160 GVDKY-D----IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREP-GPV-KG-GNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 160 ~~~~~-~----~g~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p-~~~-~~-g~~~~~~~~DPdG~~~el~~~~ 225 (362)
..... . .+.|++|+||.|+|+++++++|+++|+++..++ ... ++ ...+++||+||||+.|||++..
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 21111 1 246899999999999999999999998764432 111 11 1247899999999999999874
No 36
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.72 E-value=1.1e-16 Score=148.24 Aligned_cols=157 Identities=21% Similarity=0.243 Sum_probs=109.4
Q ss_pred cCccCCCcccccccccccccccccccccccccccccchH-hhhcccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecC
Q 018011 54 FGLRAAKPLRGDVNSTGVASSAGNAAQASTSAAHESALE-WVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDI 132 (362)
Q Consensus 54 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~ 132 (362)
.+.+.+.|.|++|+.+++........ ... +... .....+++|+||+|.|+|++++++||+++|||++......
T Consensus 95 ~~~~~~~~~DPdG~~iEl~~~~~~~~---~~~---~~~~~~~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~ 168 (294)
T TIGR02295 95 GQPEALRVEDPFGYPIEFYFEMEKVE---RLL---RRYHRHRGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTED 168 (294)
T ss_pred CCceEEEEECCCCCEEEEEEchhhcc---ccc---ccccccCCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEecc
Confidence 34578899999999999986522110 000 0000 1122478999999999999999999999999998876543
Q ss_pred CCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCC---HHHHHHHHHHcCCe--eecCCeeccCCCEE
Q 018011 133 PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD---VAKTVELIKAKGGK--VTREPGPVKGGNTV 207 (362)
Q Consensus 133 ~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~D---ld~~~~~l~~~G~~--~~~~p~~~~~g~~~ 207 (362)
+.+.....|+..+...+ .+.+.. ..+++++|+||+|+| ++++.++|+++|++ +..+|+.+..+...
T Consensus 169 ~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~ 239 (294)
T TIGR02295 169 DEGNLAAAWLHRKGGVH--DIALTN-------GNGPRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAF 239 (294)
T ss_pred CCCcEEEEEEecCCCcC--ceEeec-------CCCCceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcce
Confidence 33333345554433222 233322 124589999999998 56678899999998 66667665555567
Q ss_pred EEEEECCCCCEEEEEecC
Q 018011 208 IAFIEDPDGYKFELLERG 225 (362)
Q Consensus 208 ~~~~~DPdG~~~el~~~~ 225 (362)
++|++||+|++|||++..
T Consensus 240 ~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 240 FLYLRDPDGHRIELYTGD 257 (294)
T ss_pred EEEEECCCCCEEEEEecc
Confidence 899999999999999754
No 37
>PLN02300 lactoylglutathione lyase
Probab=99.72 E-value=1.9e-16 Score=146.12 Aligned_cols=147 Identities=50% Similarity=0.781 Sum_probs=113.8
Q ss_pred CCcccccccccccccccccccccccccccccchHhhhcccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCcee
Q 018011 59 AKPLRGDVNSTGVASSAGNAAQASTSAAHESALEWVKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYT 138 (362)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~ 138 (362)
.-+.|++|+.+++... . ....++.|+.|.|+|++++.+||+++|||++......+...+.
T Consensus 133 ~~~~DPdG~~iEl~~~-~-------------------~~~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~ 192 (286)
T PLN02300 133 AFVKDPDGYKFELIQR-G-------------------PTPEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYT 192 (286)
T ss_pred EEEECCCCCEEEEEeC-C-------------------CCCCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceE
Confidence 4578999999998843 0 0123678999999999999999999999999876554555677
Q ss_pred EEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCE
Q 018011 139 NAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYK 218 (362)
Q Consensus 139 ~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~ 218 (362)
++++..++......+++..+.+...+..+++++|++|.|+|+++++++++++|+++..+|...++...+.++|+||+|+.
T Consensus 193 ~~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~ 272 (286)
T PLN02300 193 IAMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWK 272 (286)
T ss_pred EEEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCE
Confidence 77776544332334565554443344457899999999999999999999999999998887775445788999999999
Q ss_pred EEEEecC
Q 018011 219 FELLERG 225 (362)
Q Consensus 219 ~el~~~~ 225 (362)
++|++..
T Consensus 273 i~~~~~~ 279 (286)
T PLN02300 273 TVFVDNI 279 (286)
T ss_pred EEEEccc
Confidence 9999864
No 38
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.72 E-value=1.4e-16 Score=131.41 Aligned_cols=121 Identities=18% Similarity=0.236 Sum_probs=89.3
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCC-----------CCceEEEEeccCCCCcceEEEEeecCCccc-----
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP-----------EYKYTIAMMGYGPEDKNVVLELTYNYGVTD----- 293 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~----- 293 (362)
+++||+|.|.|++++++||++ |||++......+ ..+..++++... +.+..++|........
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP--DGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC--CCCceEEEEEecCCCCcCcCC
Confidence 589999999999999999998 999876443221 123445555422 2356677765322111
Q ss_pred --ccCCCceeEEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 294 --YDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 294 --~~~g~g~~hiaf~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
...+.|+.|++|.|+|+++++++|+++|+++..++...+.+ .+++|++||||+.|||+|.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~-~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENS-YRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCC-eEEEEEECCCCCEEEeeec
Confidence 12345789999999999999999999999998876544432 4789999999999999984
No 39
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.72 E-value=3e-16 Score=132.31 Aligned_cols=118 Identities=25% Similarity=0.387 Sum_probs=85.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeC
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~ 178 (362)
++|+||.|.|+|++++++||+++|||++......+.+.....++..++..+ .+.+.. ..+++++|++|.|+
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~--~i~l~~-------~~~~~~~Hiaf~v~ 72 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVH--DTALTG-------GNGPRLHHVAFWVP 72 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcc--eEEEec-------CCCCceeEEEEEcC
Confidence 689999999999999999999999999876543322333345555433322 233322 12457999999998
Q ss_pred C---HHHHHHHHHHcCCe--eecCCeeccCCCEEEEEEECCCCCEEEEEecC
Q 018011 179 D---VAKTVELIKAKGGK--VTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 179 D---ld~~~~~l~~~G~~--~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
| +++++++|+++|+. +..+|+.+..+...++||+||+|+.||+.+..
T Consensus 73 ~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 73 EPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 6 78888899999986 33445444434456799999999999999654
No 40
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.72 E-value=2.3e-16 Score=126.37 Aligned_cols=114 Identities=21% Similarity=0.314 Sum_probs=85.5
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~ 176 (362)
.+.+|+||.|.|+|++++++||+++|||++..+.+ ..+++...+......+.+... ...+++|++|.
T Consensus 3 ~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~------~~~~l~~~~~~~~~~~~l~~~-------~~~~~~h~af~ 69 (121)
T cd09013 3 DIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG------QSVYLRAWGDYEHHSLKLTES-------PEAGLGHIAWR 69 (121)
T ss_pred CccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC------CeEEEEeccCCCccEEEEeeC-------CCCceEEEEEE
Confidence 47899999999999999999999999999887643 245665543322334444331 13489999999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecC
Q 018011 177 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 177 V~---Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
|+ |++++.++++++|+++.+.+... +.+..+||+||||+.+|+....
T Consensus 70 v~~~~~v~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 70 ASSPEALERRVAALEASGLGIGWIEGDP--GHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred cCCHHHHHHHHHHHHHcCCccccccCCC--CCcceEEEECCCCCEEEEEEec
Confidence 98 48899999999999875433222 3456789999999999998653
No 41
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.72 E-value=2.3e-16 Score=129.86 Aligned_cols=113 Identities=22% Similarity=0.283 Sum_probs=88.5
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCC--
Q 018011 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD-- 179 (362)
Q Consensus 102 ~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~D-- 179 (362)
+||.|.|+|++++++||+++|||++..+... ..+|+.+.+...+..+.+... ...+++|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~~-------~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGPA-------SSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeeccC-------CCCceEEEEEECCCHH
Confidence 5999999999999999999999998876421 457777654332333333221 23489999999986
Q ss_pred -HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCC
Q 018011 180 -VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (362)
Q Consensus 180 -ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~ 226 (362)
+++++++|+++|+++.++|+.++.+..+.+||+||+|+.|||.....
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 56789999999999998888877667788999999999999987643
No 42
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.72 E-value=3.7e-16 Score=132.46 Aligned_cols=123 Identities=22% Similarity=0.350 Sum_probs=90.6
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~ 176 (362)
.|.+|+||.|.|+|++++++||+++|||++..............|+....... .+.+..... ....+++|+||+
T Consensus 3 ~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~l~~~~~----~~~~~~~hiaf~ 76 (166)
T cd09014 3 GVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVH--DVAYTRDPA----GARGRLHHLAYA 76 (166)
T ss_pred CcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCce--eEEEecCCC----CCCCCceEEEEE
Confidence 47899999999999999999999999999877643332223345665543322 233332111 122368999999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecC
Q 018011 177 VDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 177 V~D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
|+| +++++++|+++|+++..+|.....+...++|++||+|++|||.+..
T Consensus 77 v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~~ 128 (166)
T cd09014 77 LDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGGG 128 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEcC
Confidence 996 5588889999999987777666554556799999999999999873
No 43
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.71 E-value=2.1e-16 Score=126.52 Aligned_cols=115 Identities=26% Similarity=0.362 Sum_probs=86.1
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~ 176 (362)
++++|+|+.|.|+|++++++||+++|||++....+ ..+++..........+.+... ...+..|++|.
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~~~~~~hi~~~ 67 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD------DRIYLRGLEEFIHHSLVLTKA-------PVAGLGHIAFR 67 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC------CeEEEEecCCCceEEEEEeeC-------CCCceeEEEEE
Confidence 46899999999999999999999999999876532 234454322222233343321 12478899999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 177 VD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 177 V~---Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
|. |+++++++|+++|+++...|.....+..+.+|+.||+|++||+...
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 95 6999999999999998776544444556789999999999999864
No 44
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.71 E-value=4.5e-16 Score=130.58 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=84.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCC-CcCCCCeEEEEEEeC
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK-YDIGTGFGHFGIAVD 178 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~-~~~g~~~~hiaf~V~ 178 (362)
+|+||.|.|+|++++++||+++|||++..+.. . ...+...+. ..+..+++........ .....+++|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~----~-~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG----D-RVRLEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC----C-EEEEEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 58999999999999999999999999987653 1 223333221 1223455544322111 112347899999999
Q ss_pred C---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCC
Q 018011 179 D---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (362)
Q Consensus 179 D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~ 226 (362)
| +++++++|+++|+++.. +. ..+..+++||+||+|+.|||.+..+
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~~-~~--~~~~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 75 DDEELEAWKERLEALGLPVSG-IV--DRFYFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred CHHHHHHHHHHHHHCCCCccc-cc--ccccEEEEEEECCCCcEEEEEECCC
Confidence 8 99999999999998643 22 2345678999999999999998753
No 45
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=99.71 E-value=4.6e-17 Score=143.63 Aligned_cols=254 Identities=19% Similarity=0.337 Sum_probs=168.2
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCC--ceeEEEEeecCCCceEEEEEeecCCC-----CCCcCCCC
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE--KYTNAFLGYGPEDSHFVIELTYNYGV-----DKYDIGTG 169 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~l~l~~~~~~-----~~~~~g~~ 169 (362)
.+.+++||.+.|.|...+++||+..|||++....+...+ .+...-++.|. ..+.+.-...... .-..+|.+
T Consensus 14 ~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~--~vFv~~s~~~p~~~~~G~~l~~Hgdg 91 (381)
T KOG0638|consen 14 KFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGK--IVFVFNSAYNPDNSEYGDHLVKHGDG 91 (381)
T ss_pred ceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCC--EEEEEecCCCCCchhhhhhhhhcccc
Confidence 357999999999999999999999999999876543221 12222222221 1112211111111 11236788
Q ss_pred eEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccC--CCEEEEEEECCCCCEEEEEecCCC-----------------C--
Q 018011 170 FGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLERGPT-----------------P-- 228 (362)
Q Consensus 170 ~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~~el~~~~~~-----------------~-- 228 (362)
+.-+||+|+|++++.+.+.++|+++..+|..+.. |..+++.++.+......+++.... |
T Consensus 92 vkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~FLPGF~~v~~~~~fp~l 171 (381)
T KOG0638|consen 92 VKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGPFLPGFEPVSSDALFPKL 171 (381)
T ss_pred hhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhccccccCCCCcccCccccccCCC
Confidence 9999999999999999999999999988876554 567777777776555555544310 1
Q ss_pred -----CCcceeeeeeC--ChHHHHHHHHHhhCCeeeeeecCCCCc-----eEEEEeccCCCCcceEEEEeecC-Ccc---
Q 018011 229 -----EPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPEYK-----YTIAMMGYGPEDKNVVLELTYNY-GVT--- 292 (362)
Q Consensus 229 -----~~i~~v~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~l~l~~~~-~~~--- 292 (362)
..++|++.+++ .++.+.+||.+.|||.-.+..+++... .+.+.+...+ ....+.+.+.. +.+
T Consensus 172 ~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~--esi~mpinEp~~G~k~ks 249 (381)
T KOG0638|consen 172 PKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYE--ESIKMPINEPAPGKKKKS 249 (381)
T ss_pred CccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCC--ccEEEeccCCCCCCccHH
Confidence 25799999999 589999999999999887776544211 0111111111 12223232211 111
Q ss_pred ------cccCCCceeEEEEEeCCHHHHHHHHHHcCCeeecCCccc--------C--C---C-------CceEEEEECCCC
Q 018011 293 ------DYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPL--------P--G---I-------NTKITACLDPDG 346 (362)
Q Consensus 293 ------~~~~g~g~~hiaf~v~Did~~~~~l~~~G~~v~~~p~~~--------~--~---~-------~~~~~~~~DPdG 346 (362)
.++.|+|++||++.++||-.+.+.++++|+++..+|... . . . .-.+..=.|-.|
T Consensus 250 QIqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~g 329 (381)
T KOG0638|consen 250 QIQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENG 329 (381)
T ss_pred HHHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCc
Confidence 246789999999999999999999999999999888532 1 0 0 012445567778
Q ss_pred CeEEEEcc
Q 018011 347 WKTVFVDN 354 (362)
Q Consensus 347 ~~iel~~~ 354 (362)
+.+.|+..
T Consensus 330 yLLQIFTK 337 (381)
T KOG0638|consen 330 YLLQIFTK 337 (381)
T ss_pred EEeeeecc
Confidence 88888753
No 46
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.70 E-value=2.8e-16 Score=126.57 Aligned_cols=112 Identities=17% Similarity=0.256 Sum_probs=85.4
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~ 176 (362)
++.+|+||+|.|+|++++.+||+++|||++..+.. ...|+..+... ..+.+.... ++..|++|+
T Consensus 3 ~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~------~~~~l~~~~~~--~~i~l~~~~--------~~~~~iaf~ 66 (124)
T cd08361 3 ELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA------KATYFRSDARD--HTLVYIEGD--------PAEQASGFE 66 (124)
T ss_pred eEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC------CeEEEEcCCcc--EEEEEEeCC--------CceEEEEEE
Confidence 46799999999999999999999999999876532 24667765432 234443311 356799999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeecc--CCCEEEEEEECCCCCEEEEEec
Q 018011 177 VDD---VAKTVELIKAKGGKVTREPGPVK--GGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 177 V~D---ld~~~~~l~~~G~~~~~~p~~~~--~g~~~~~~~~DPdG~~~el~~~ 224 (362)
|+| +++++++|+++|+++.+++.... .+...++||+|||||.||+...
T Consensus 67 v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~ 119 (124)
T cd08361 67 LRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVR 119 (124)
T ss_pred ECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEe
Confidence 986 99999999999999876654221 2446678999999999999865
No 47
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.70 E-value=9e-16 Score=123.40 Aligned_cols=118 Identities=25% Similarity=0.420 Sum_probs=86.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCC-CCCcCCCCeEEEEEEe
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV-DKYDIGTGFGHFGIAV 177 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~~~~g~~~~hiaf~V 177 (362)
++|+||.|.|+|++++++||+++|||++....+ ..+++..++ ....+.+...... .......+..|++|.|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~------~~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v 72 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD------STAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILL 72 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC------CEEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEEC
Confidence 579999999999999999999999999987632 235555443 2234444443221 1222345789999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCC
Q 018011 178 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 227 (362)
Q Consensus 178 ~D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~ 227 (362)
++ +++++++|+++|+++..+ ... +..+.+||+||||+++||....|.
T Consensus 73 ~~~~~v~~~~~~l~~~g~~~~~~-~~~--~~~~~~~~~DPdG~~iEi~~~~~~ 122 (125)
T cd07255 73 PSRADLAAALRRLIELGIPLVGA-SDH--LVSEALYLSDPEGNGIEIYADRPR 122 (125)
T ss_pred CCHHHHHHHHHHHHHcCCceecc-ccc--cceeEEEEECCCCCEEEEEEecCc
Confidence 84 999999999999987543 222 345789999999999999987653
No 48
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.70 E-value=1.2e-16 Score=128.47 Aligned_cols=120 Identities=28% Similarity=0.409 Sum_probs=86.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecC--CCCceeEEEEeecCCCceEEEEEeecCCCCCCcC---CCCeEEEE
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDI--PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDI---GTGFGHFG 174 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~--~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~---g~~~~hia 174 (362)
+|+||+|.|.|++++++||+++|||+++..... ........++..+.. .+.+............. ..+..|++
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 78 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG--HIELFLNPSPPPRASGHSFPEHGGHHIA 78 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS--CEEEEEEESSSSSSEEEHHHSHTSEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc--ceeeeeeccccccccccccccccceeEE
Confidence 699999999999999999999999999987762 222334455554443 33333333222211111 01455667
Q ss_pred EEeC---CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEE
Q 018011 175 IAVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 221 (362)
Q Consensus 175 f~V~---Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el 221 (362)
+.+. |+++++++|++.|+++..+|.....+...++|++||+|++|||
T Consensus 79 ~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 79 FLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 6666 5889999999999999988888877777778899999999997
No 49
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.70 E-value=7.9e-16 Score=125.23 Aligned_cols=119 Identities=20% Similarity=0.237 Sum_probs=84.2
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCc-eeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEK-YTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGI 175 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf 175 (362)
||.+|+||.|.|+|++++++||+++|||++..+....... ....++..++ ..+++...... ...+++|++|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~----~~~~~~Hiaf 72 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGG----LWIAIMEGDSL----QERTYNHIAF 72 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCC----eEEEEecCCCC----CCCCceEEEE
Confidence 6789999999999999999999999999876654211100 0011222222 23444432111 1236899999
Q ss_pred EeC--CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 176 AVD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 176 ~V~--Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
.|+ |++++.++|+++|+++..+. ....+.++.+||+|||||.+||...
T Consensus 73 ~v~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 73 KISDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred EcCHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecC
Confidence 998 69999999999999886432 3333457799999999999999965
No 50
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.70 E-value=5.6e-16 Score=128.16 Aligned_cols=113 Identities=22% Similarity=0.411 Sum_probs=86.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeC
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~ 178 (362)
.+|+||.|.|+|++++++||+++|||++..... . ...|+..+..... +.+... ...+++|++|.|+
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~----~-~~~~l~~~~~~~~--~~l~~~-------~~~~~~hiaf~v~ 68 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG----D-QMAFLRCNSDHHS--IAIARG-------PHPSLNHVAFEMP 68 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC----C-eEEEEECCCCcce--EEEccC-------CCCceEEEEEECC
Confidence 489999999999999999999999999875532 1 3456776654333 333321 1347899999999
Q ss_pred CHHHHH---HHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecC
Q 018011 179 DVAKTV---ELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 179 Dld~~~---~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
|++++. ++|+++|+++..++.....+..+++||+||+|+.|||++..
T Consensus 69 d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 69 SIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 977665 89999999998776655555567789999999999999774
No 51
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.70 E-value=2.8e-16 Score=126.77 Aligned_cols=119 Identities=32% Similarity=0.510 Sum_probs=85.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCC------CcCCCCeEEE
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK------YDIGTGFGHF 173 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~------~~~g~~~~hi 173 (362)
+|+|+.|.|+|++++++||+++|||++......+..+...+++..++ ..+++........ ...+.+++|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGN----TKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCC----EEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 58999999999999999999999999876543333344556665542 2344443211110 0124588999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecC-CeeccCCCEEEEEE--ECCCCCEEEEEe
Q 018011 174 GIAVDDVAKTVELIKAKGGKVTRE-PGPVKGGNTVIAFI--EDPDGYKFELLE 223 (362)
Q Consensus 174 af~V~Dld~~~~~l~~~G~~~~~~-p~~~~~g~~~~~~~--~DPdG~~~el~~ 223 (362)
+|.|+|+++++++|+++|+++..+ |.... ++.+..|+ +||||++||+.+
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~-~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGA-GGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCC-CCCEEEEecccccCcEEEEecC
Confidence 999999999999999999998764 33333 33455666 799999999974
No 52
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.70 E-value=3.2e-16 Score=131.06 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=88.6
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCC-CCceEEEEeccCCCC---cceEEEEeecCCcccccCCCceeEEEE
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP-EYKYTIAMMGYGPED---KNVVLELTYNYGVTDYDKGNAYAQIAI 305 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~-~~~~~~~~l~~~~~~---~~~~l~l~~~~~~~~~~~g~g~~hiaf 305 (362)
+|+||.|.|+|++++++||+++||+++......+ ..+....++..+... .+..+.+. ...++++.|++|
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~-------~~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALA-------QGPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHh-------cCCCCceeEEEE
Confidence 4789999999999999999999999987554333 222344455432210 00111111 112468999999
Q ss_pred EeCCHHHHH---HHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccccc
Q 018011 306 GTDDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 358 (362)
Q Consensus 306 ~v~Did~~~---~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 358 (362)
.|+|++++. ++|+++|+++.++|+++..+...++|++|||||.|||.......
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~~~ 129 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGDLV 129 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCceeE
Confidence 999999986 99999999999888877655456789999999999999766443
No 53
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.69 E-value=5.8e-16 Score=123.94 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=84.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeC
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~ 178 (362)
.+|+||+|.|+|++++++||+++|||++..+.. . ...++..++. ++.+.+... ...+..|++|.++
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~~--~~~~~l~~~-------~~~~~~~~~f~v~ 66 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---D--GALYLRMDDR--AWRIAVHPG-------EADDLAYAGWEVA 66 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC---C--CeEEEEccCC--ceEEEEEeC-------CCCceeEEEEEEC
Confidence 379999999999999999999999999865421 1 2355655433 334455432 1247789999997
Q ss_pred C---HHHHHHHHHHcCCeeecCCeec--cCCCEEEEEEECCCCCEEEEEecC
Q 018011 179 D---VAKTVELIKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 179 D---ld~~~~~l~~~G~~~~~~p~~~--~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
+ +++++++|+++|+++...+... ..+..+++||+|||||.|||+...
T Consensus 67 ~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 67 DEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 4 9999999999999998655322 234457899999999999998653
No 54
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.69 E-value=6.5e-16 Score=130.41 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=88.4
Q ss_pred CCCcceeeeeeCChHHHHHHHHHhhCCeeeee----ecC--------------CCCceEEEEeccCCCCcceEEEEeecC
Q 018011 228 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRK----RDN--------------PEYKYTIAMMGYGPEDKNVVLELTYNY 289 (362)
Q Consensus 228 ~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~----~~~--------------~~~~~~~~~l~~~~~~~~~~l~l~~~~ 289 (362)
+.+++||.|.|.|+++|++||+++|||++..+ .+. ....+.+.++..++ +..++|....
T Consensus 2 ~~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---~~~ieL~~~~ 78 (162)
T TIGR03645 2 PRTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD---RIGVELFEFK 78 (162)
T ss_pred CceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---CCcEEEEecc
Confidence 35689999999999999999999999987531 010 11124555565332 4557777654
Q ss_pred Ccccc-----cCCCceeEEEEEeCCHHHHHHHHHHcCCeeecCCcc--cCCC-CceEEEEECCCCCeEEEEccc
Q 018011 290 GVTDY-----DKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGP--LPGI-NTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 290 ~~~~~-----~~g~g~~hiaf~v~Did~~~~~l~~~G~~v~~~p~~--~~~~-~~~~~~~~DPdG~~iel~~~~ 355 (362)
..... ..+.|..|++|.|+|+++++++|+++|+++..++.. .++. ..+.+|++|||||.|||+++.
T Consensus 79 ~~~~~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 152 (162)
T TIGR03645 79 NQENPEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHS 152 (162)
T ss_pred CCCCCCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcC
Confidence 32211 124689999999999999999999999986543321 1221 137899999999999999976
No 55
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.69 E-value=8.7e-16 Score=125.44 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=89.9
Q ss_pred CCCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEe
Q 018011 228 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 307 (362)
Q Consensus 228 ~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v 307 (362)
|.+++|+.|.|.|++++++||+++||+++..... . ...++..+....+..+.+.... ....++.|++|.|
T Consensus 1 ~~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~~~~~i~l~~~~-----~~~~g~~hiaf~v 70 (134)
T cd08360 1 PRRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGGDHHNLFLIKTP-----APMAGFHHAAFEV 70 (134)
T ss_pred CceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCCCCcEEEEecCC-----CCCCcceEEEEEe
Confidence 4578999999999999999999999999865432 1 1233433222234555554321 1246899999999
Q ss_pred CCHHHHH---HHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccccc
Q 018011 308 DDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFL 358 (362)
Q Consensus 308 ~Did~~~---~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~ 358 (362)
+|++++. ++|+++|+++..+|..++.+..+.+||+||+||.|||.......
T Consensus 71 ~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~~~~ 124 (134)
T cd08360 71 GDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADMDYV 124 (134)
T ss_pred CCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcccccc
Confidence 9888766 59999999998888776665456789999999999999866544
No 56
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=6.5e-16 Score=123.93 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=84.9
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCccc---ccCCCceeEEEEE
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQIAIG 306 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~---~~~g~g~~hiaf~ 306 (362)
+++|+.|.|.|++++++||+++|||++......+..++..+++..++ +..+++........ .....+..|++|.
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~ 77 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD---GARLELMTRPDIAPSPNEGERTGWAHLAFS 77 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC---CcEEEEEcCcccCCCcccCCCCceEEEEEE
Confidence 47899999999999999999999999764433333334444554321 45567664322211 1223578999999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 018011 307 TD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 352 (362)
Q Consensus 307 v~---Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~ 352 (362)
|+ |+++++++|+++|+++..+|...+.+ .+.++++|||||.|||.
T Consensus 78 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g-~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 78 VGSKEAVDELTERLRADGYLIIGEPRTTGDG-YYESVILDPEGNRIEIT 125 (125)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEeCceecCCC-eEEEEEECCCCCEEEeC
Confidence 95 58999999999999999877544432 24578999999999983
No 57
>PRK11478 putative lyase; Provisional
Probab=99.69 E-value=8.5e-16 Score=124.33 Aligned_cols=121 Identities=16% Similarity=0.163 Sum_probs=83.8
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCC-CceEEEEeccCCCCcceEEEEeecCCcc---cccCCCceeEEE
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-YKYTIAMMGYGPEDKNVVLELTYNYGVT---DYDKGNAYAQIA 304 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~l~~~~~~~---~~~~g~g~~hia 304 (362)
.+++||.|.|+|++++++||+++|||++......++ ..+... +... .+..+++....... ......+..|++
T Consensus 5 ~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~---~~~~l~l~~~~~~~~~~~~~~~~g~~hi~ 80 (129)
T PRK11478 5 KQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGD-LALN---GQYVIELFSFPFPPERPSRPEACGLRHLA 80 (129)
T ss_pred ceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceee-EecC---CCcEEEEEEecCCCCCCCCCCCCceeEEE
Confidence 468999999999999999999999999864322111 122111 1111 14566665422111 112235788999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 305 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 305 f~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
|.|+|+++++++|+++|+++...+.. +..+.+++||+|||||.|||+|.
T Consensus 81 f~v~d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 81 FSVDDIDAAVAHLESHNVKCEAIRVD-PYTQKRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred EEeCCHHHHHHHHHHcCCeeeccccC-CCCCCEEEEEECCCCCEEEEEeC
Confidence 99999999999999999998744322 22235889999999999999873
No 58
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.68 E-value=1.6e-15 Score=120.00 Aligned_cols=110 Identities=21% Similarity=0.298 Sum_probs=81.8
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEe
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V 177 (362)
|++|+||.|.|+|++++++||++ |||++..+.+ ..+++..++... ..+.+... ..+++.|++|.|
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~------~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~~af~v 65 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD------DELYYRGYGTDP-FVYVARKG-------EKARFVGAAFEA 65 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC------CeEEEecCCCcc-EEEEcccC-------CcCcccEEEEEE
Confidence 56899999999999999999999 9999876532 234565443322 22222211 134788999999
Q ss_pred CCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 178 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 178 ~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+|.+++.+.++++|++....+. .+ +..+++||+||+||.|||+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~-~~-~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 66 ASRADLEKAAALPGASVIDDLE-AP-GGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred CCHHHHHHHHHcCCCeeecCCC-CC-CCceEEEEECCCCCEEEEEec
Confidence 9999999999999998765432 22 345689999999999999865
No 59
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.68 E-value=1e-15 Score=122.54 Aligned_cols=118 Identities=29% Similarity=0.466 Sum_probs=86.3
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCC---CCCcCCCCeEEEE
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV---DKYDIGTGFGHFG 174 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~---~~~~~g~~~~hia 174 (362)
|++|+||.|.|+|++++++||+++|||+.....+.. ...++..++ . .+++...... .....+.+..|++
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~----~~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~~~~hi~ 72 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV----GRKALRFGS--Q--KINLHPVGGEFEPAAGSPGPGSDDLC 72 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC----CceEEEeCC--E--EEEEecCCCccCcCccCCCCCCceEE
Confidence 468999999999999999999999999987654311 123344433 2 3344332111 1122456889999
Q ss_pred EEeCC-HHHHHHHHHHcCCeeecCCeeccC--CCEEEEEEECCCCCEEEEEe
Q 018011 175 IAVDD-VAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 175 f~V~D-ld~~~~~l~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~~el~~ 223 (362)
|.+++ +++++++|+++|+++..+|....+ +..+.+||+||+|++||+.+
T Consensus 73 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 73 LITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred EEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 99985 999999999999999877655432 34578999999999999986
No 60
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.68 E-value=2.1e-15 Score=122.68 Aligned_cols=116 Identities=28% Similarity=0.421 Sum_probs=88.4
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCH-
Q 018011 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV- 180 (362)
Q Consensus 102 ~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dl- 180 (362)
+||.|.|+|++++++||+++||+++......+ ......|+..++... .+.+.... ...++.|++|.|+|+
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~~~--~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDEDHH--DLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCCcc--eEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 59999999999999999999999987765433 223456676654332 34443321 145899999999986
Q ss_pred --HHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCC
Q 018011 181 --AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (362)
Q Consensus 181 --d~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~ 226 (362)
++++++|+++|+++..+|...+.+..+++||+||+|++|||++..+
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 4788999999999987776655555678899999999999997754
No 61
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.68 E-value=1.8e-15 Score=125.01 Aligned_cols=118 Identities=9% Similarity=0.113 Sum_probs=85.2
Q ss_pred CCCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCce-EEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEE
Q 018011 228 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKY-TIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 306 (362)
Q Consensus 228 ~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~ 306 (362)
+.+++|++|.|+|++++.+||+++|||++..+...+++.. ...++..+.. ...+.+.. ..+.++.|++|.
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~--~h~~~~~~-------~~~~~~~Hiaf~ 74 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK--PHDIAFVG-------GPDGKLHHFSFF 74 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC--cceEEEec-------CCCCCceEEEEE
Confidence 4579999999999999999999999999866543333322 2233433221 22333321 113578999999
Q ss_pred eCCHHH---HHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 307 TDDVYK---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 307 v~Did~---~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
|+|+++ +.++|+++|+++..+|.++..+.++.+||+|||||.|||...
T Consensus 75 v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 75 LESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred cCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 998777 678999999999888876553345789999999999999763
No 62
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.68 E-value=1.5e-15 Score=120.10 Aligned_cols=114 Identities=23% Similarity=0.280 Sum_probs=84.7
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCH
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDV 310 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Di 310 (362)
+.|++|.|+|++++++||+++||+++..... ++..+.+ +..++ ...+.+....... ....+..|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~~--~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYAV--FSTGG---GAVGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceEE--EEeCC---ccEEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999865442 2233433 33322 2233333322111 2345678999999999
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 311 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 311 d~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
++++++|+++|++++.+|...+++ ++.++++|||||.|+|.|
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIPGV-GRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccCCc-EEEEEEECCCCCEEEeEC
Confidence 999999999999999998776643 589999999999999975
No 63
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.67 E-value=1.1e-15 Score=124.37 Aligned_cols=113 Identities=21% Similarity=0.389 Sum_probs=81.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCC-
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD- 179 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~D- 179 (362)
|+||.|.|+|++++++||+++|||++..... ...++..++ . .+.+.............+++|++|.|++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~------~~~~~~~~~--~--~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE------KTAYFTIGG--T--WLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC------ccceEeeCc--e--EEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 6899999999999999999999999875432 223455432 2 3334332221111223478999999984
Q ss_pred -HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 180 -VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 180 -ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+++++++|+++|+++..++.... +.++.+||+|||||.|||.+.
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~-~~~~~~~f~DPdG~~iEl~~~ 115 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDV-RDRKSIYFTDPDGHKLEVHTG 115 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCcccc-CcceEEEEECCCCCEEEEecC
Confidence 99999999999999875543332 245789999999999999965
No 64
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.67 E-value=1.7e-15 Score=120.85 Aligned_cols=114 Identities=25% Similarity=0.333 Sum_probs=84.7
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEe
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V 177 (362)
+.+|+||.|.|+|++++++||+++|||++..... ...++..++. ..+.+.+... ..++.+|++|.|
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~v 66 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD------GIVYLRATGS-EHHILRLRRS-------DRNRLDVVSFSV 66 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC------CEEEEECCCC-ccEEEEeccC-------CCCCCceEEEEe
Confidence 4689999999999999999999999999875533 2345554332 2233333321 123678999999
Q ss_pred C---CHHHHHHHHHHcCCeeecCCeecc-CCCEEEEEEECCCCCEEEEEecC
Q 018011 178 D---DVAKTVELIKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 178 ~---Dld~~~~~l~~~G~~~~~~p~~~~-~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
+ ++++++++|+++|+++..++.... .+.++.++|+||+|+.|||+...
T Consensus 67 ~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 67 ASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred CCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 5 699999999999999887764432 23466789999999999998753
No 65
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.67 E-value=2.1e-15 Score=120.78 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=84.9
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCC-CceEEEEeccCCCCcceEEEEeecCCcc---cccCCCceeEEEE
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-YKYTIAMMGYGPEDKNVVLELTYNYGVT---DYDKGNAYAQIAI 305 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~l~l~~~~~~~---~~~~g~g~~hiaf 305 (362)
+++|+.|.|.|++++.+||+++|||++......++ ..+.+. +... .+..+++....... ....+.+..|++|
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~-~~~~---~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~ 78 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLD-LLLN---GGYQLELFSFPNPPERPSYPEACGLRHLAF 78 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEE-EecC---CCcEEEEEEcCCCCCCCCCCcCCCceEEEE
Confidence 68999999999999999999999999875432222 233332 2211 13455554322111 1123457899999
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 306 GTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 306 ~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
.|+|+++++++|+++|+++...+..... +.+++|++||+||.|||+|
T Consensus 79 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 79 SVEDIEAAVKHLKAKGVEVEPIRVDEFT-GKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EeCCHHHHHHHHHHcCCccccccccCCC-ceEEEEEECCCCCEEEecC
Confidence 9999999999999999998876533233 2478999999999999986
No 66
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.67 E-value=1.7e-15 Score=122.17 Aligned_cols=119 Identities=23% Similarity=0.337 Sum_probs=85.6
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcc-c---c--cCCCceeEE
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-D---Y--DKGNAYAQI 303 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~-~---~--~~g~g~~hi 303 (362)
+++|+.|.|.|++++++||+++|||++......++.++...++..+ ...++|....... . + ..+.+..|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i 76 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG----NTKVELLEPLGEDSPIAKFLEKNGGGIHHI 76 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC----CEEEEEEecCCCCChHHHHHhcCCCceEEE
Confidence 4789999999999999999999999987543333334455555532 3456665431111 1 1 124578899
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecC-CcccCCCCceEEEE--ECCCCCeEEEEc
Q 018011 304 AIGTDDVYKTAEAIKLFGGKVTRE-PGPLPGINTKITAC--LDPDGWKTVFVD 353 (362)
Q Consensus 304 af~v~Did~~~~~l~~~G~~v~~~-p~~~~~~~~~~~~~--~DPdG~~iel~~ 353 (362)
+|.|+|+++++++|+++|+++..+ |...+++ .+.+++ +||||+.||++|
T Consensus 77 ~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g-~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 77 AIEVDDIEAALETLKEKGVRLIDEEPRIGAGG-KPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred EEEcCCHHHHHHHHHHCCCcccCCCCccCCCC-CEEEEecccccCcEEEEecC
Confidence 999999999999999999999875 4433332 355666 799999999986
No 67
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.67 E-value=2.5e-15 Score=119.14 Aligned_cols=117 Identities=25% Similarity=0.303 Sum_probs=83.5
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCC--CCcCCCCeEEEEEEeCCH
Q 018011 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD--KYDIGTGFGHFGIAVDDV 180 (362)
Q Consensus 103 hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~--~~~~g~~~~hiaf~V~Dl 180 (362)
||.|.|.|++++++||+++|||++..+..... +...+.+...+. ....+.+....... ......+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 89999999999999999999999987654222 222223322221 13344444322211 112345788999999999
Q ss_pred HHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 181 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 181 d~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
++++++|+++|+++..++... +.++.+|++||+|+.|||++
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREM--PYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccC--CCceEEEEECCCCCEEEEeC
Confidence 999999999999998877433 34578999999999999974
No 68
>PRK06724 hypothetical protein; Provisional
Probab=99.66 E-value=2.7e-15 Score=121.37 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=79.6
Q ss_pred cccceeeEEEEEeCCHHHHHHHHHHhc---CCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEE
Q 018011 96 KDKRRMLHVVYRVGDLDRTIKFYTECL---GMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGH 172 (362)
Q Consensus 96 ~~i~~l~hV~l~v~d~~~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~h 172 (362)
.|+.+|+||+|.|+|++++++||+++| ||+...... + . ... ..+.+...... .....+..|
T Consensus 3 ~~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~-~--~g~--~~l~l~~~~~~--~~~~~g~~h 66 (128)
T PRK06724 3 TLRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------Y-S--TGE--SEIYFKEVDEE--IVRTLGPRH 66 (128)
T ss_pred ccCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------e-e--CCC--eeEEEecCCcc--ccCCCCcee
Confidence 367899999999999999999999966 666542111 1 1 111 11222111000 112347889
Q ss_pred EEEEe---CCHHHHHHHHHHcCCeeecCCeeccC--CCEEEEEEECCCCCEEEEEec
Q 018011 173 FGIAV---DDVAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 173 iaf~V---~Dld~~~~~l~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~~el~~~ 224 (362)
+||.| +|+|+++++|+++|+++..+|...+. ++.+.+||+||||+.|||...
T Consensus 67 ~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 67 ICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred EEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 99998 57999999999999999878765442 345788999999999999866
No 69
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.66 E-value=3.3e-15 Score=120.07 Aligned_cols=113 Identities=17% Similarity=0.262 Sum_probs=83.2
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEE
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~ 176 (362)
|..+++|+.|.|+|++++++||+++|||++..... . ..++..++ . ..+.+.... ...+..|++|.
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~-~--~~l~~~~~~------~~~~~~h~a~~ 65 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----P--FAVVKLDN-G--VSLDFAQPD------GEIPPQHYAFL 65 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----C--EEEEEcCC-C--cEEEEecCC------CCCCcceEEEE
Confidence 35789999999999999999999999999876321 1 22233222 1 234443321 12256799999
Q ss_pred eC--CHHHHHHHHHHcCCeeecCCeec------cCCCEEEEEEECCCCCEEEEEec
Q 018011 177 VD--DVAKTVELIKAKGGKVTREPGPV------KGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 177 V~--Dld~~~~~l~~~G~~~~~~p~~~------~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
|+ |+++++++|+++|+++..+|... ..++.+.+||+|||||.|||++.
T Consensus 66 v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 66 VSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred eCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 87 69999999999999987766543 12456899999999999999986
No 70
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.66 E-value=2.9e-15 Score=118.86 Aligned_cols=112 Identities=28% Similarity=0.443 Sum_probs=86.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeC
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~ 178 (362)
++|+||.|.|+|++++++||+++|||++..... ..+++..+. ..++.+.+... ...++.|++|.|+
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~ 66 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA------GSVYLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVA 66 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC------CeEEEecCC-CCcEEEEEEeC-------CCCCceeEEEEcC
Confidence 579999999999999999999999999987653 345666552 22334444432 1247889999998
Q ss_pred ---CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecC
Q 018011 179 ---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 179 ---Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
|++++.++|+++|+++...+...+ ++.+.+||.||+|+.+|+....
T Consensus 67 ~~~~v~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 67 SEEDLEALAAHLEAAGVAPEEASDPEP-GVGRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCccCC-CCceEEEEECCCCCEEEEEEcc
Confidence 589999999999999987765333 4567889999999999999653
No 71
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.66 E-value=4.6e-15 Score=117.31 Aligned_cols=114 Identities=25% Similarity=0.247 Sum_probs=83.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCH
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDV 180 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dl 180 (362)
+.||.|.|+|++++++||+++||+++..... ... ..+++..++. . .+.+....... .......|++|.|+|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~--~~~~~~~~~~-~--~~~~~~~~~~~--~~~~~~~~~~f~v~di 72 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGG--DYAVFSTGGG-A--VGGLMKAPEPA--AGSPPGWLVYFAVDDV 72 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCC--ceEEEEeCCc-c--EEEEecCCCCC--CCCCCeEEEEEEeCCH
Confidence 4799999999999999999999999876543 112 2344554431 1 12222211111 1233567899999999
Q ss_pred HHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 181 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 181 d~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
++++++|+++|+++..+|...+ +.++.+||+||+|+.|+|++
T Consensus 73 ~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 73 DAAAARVEAAGGKVLVPPTDIP-GVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHHHHHHHHCCCEEEeCCcccC-CcEEEEEEECCCCCEEEeEC
Confidence 9999999999999998887665 45688999999999999974
No 72
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.65 E-value=1.9e-15 Score=118.59 Aligned_cols=113 Identities=28% Similarity=0.370 Sum_probs=81.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCC-CCcCCCCeEEEEEEeCC
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD-KYDIGTGFGHFGIAVDD 179 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~-~~~~g~~~~hiaf~V~D 179 (362)
|+||+|.|+|++++++||+++|||++..+...+ ....++..++. .. +++....... ....+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~---~~~~~~~~~~~-~~--i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFL---FPGAWLYAGDG-PQ--LHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCC---CCceEEEeCCC-cE--EEEEecCCCccccCCCcccceEEEEeCC
Confidence 689999999999999999999999987653321 12345555443 22 3333321111 11223478899999999
Q ss_pred HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEE
Q 018011 180 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 221 (362)
Q Consensus 180 ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el 221 (362)
+++++++++++|+++..++.. . ...+.+||.||+|+++||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~-~-~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVP-G-DGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCC-C-CCccEEEEECCCCCEEeC
Confidence 999999999999999877654 2 235678999999999996
No 73
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.65 E-value=3e-15 Score=120.57 Aligned_cols=119 Identities=32% Similarity=0.528 Sum_probs=86.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCC-CCceeEEEEeecCCCceEEEEEeecCCC-CC-----CcCCCCeEEE
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIP-EEKYTNAFLGYGPEDSHFVIELTYNYGV-DK-----YDIGTGFGHF 173 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~l~l~~~~~~-~~-----~~~g~~~~hi 173 (362)
|+||+|.|+|++++++||+++|||++....... ......+++..++ ..+++...... .. ...+.++.|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGN----VQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCC----EEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 589999999999999999999999998765432 2334456666532 34444432211 11 1246789999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCC--CCEEEEEe
Q 018011 174 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPD--GYKFELLE 223 (362)
Q Consensus 174 af~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPd--G~~~el~~ 223 (362)
+|.|+|+++++++++++|+++..+|.....++..+.++.+|+ |++|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999999887764455555555555555 99999974
No 74
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.65 E-value=8.1e-15 Score=118.36 Aligned_cols=116 Identities=22% Similarity=0.363 Sum_probs=84.8
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhc---CCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCC---CcCCCCeEEE
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECL---GMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK---YDIGTGFGHF 173 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vL---G~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~---~~~g~~~~hi 173 (362)
+|+||.|.|.|++++++||+++| ||++..... . ...|... .. ...+.+........ ...+.+++|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~---~~~~~~~-~~--~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D---GRSWRAG-DG--GTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c---CceEEec-CC--ceEEEEEecccCCCcccccCCcCeeEE
Confidence 58999999999999999999999 999887642 1 1123322 12 23445544322111 1234578999
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeecCCeec--cCCCEEEEEEECCCCCEEEEEe
Q 018011 174 GIAVDD---VAKTVELIKAKGGKVTREPGPV--KGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 174 af~V~D---ld~~~~~l~~~G~~~~~~p~~~--~~g~~~~~~~~DPdG~~~el~~ 223 (362)
+|.|+| +++++++|+++|+++...+... ..+..+.+||+||+|+++||+.
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 999974 8999999999999998776542 2345788999999999999985
No 75
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.64 E-value=5.7e-15 Score=118.50 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=82.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCC-ceeEEEEeecCCCceEEEEEeecCCCCC--CcCCCCeEEEEEE
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-KYTNAFLGYGPEDSHFVIELTYNYGVDK--YDIGTGFGHFGIA 176 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~l~l~~~~~~~~--~~~g~~~~hiaf~ 176 (362)
+|+||.|.|.|++++++||+++|||++..+...... .....++..........+++........ .....+++|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 579999999999999999999999998876543221 1112333322111122455544222111 1223468899999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEE
Q 018011 177 VDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (362)
Q Consensus 177 V~D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~ 222 (362)
|+| +++++++++++|+++...+.. ++.+.+||+||+|++|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH---FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee---cceEEEEEECCCCCEEEeC
Confidence 994 799999999999998754332 3467899999999999984
No 76
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.64 E-value=3.3e-15 Score=119.78 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=83.4
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 308 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~ 308 (362)
.++.|+.|.|.|++++++||+++|||++..... ++ . . ++.......+..+.+.. ....+..|++|.|.
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~-~-~-~~~~~~~~~~~~~~l~~-------~~~~~~~hiaf~v~ 70 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG-R-V-YLKAWDEFDHHSIVLRE-------ADTAGLDFMGFKVL 70 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc-e-E-EEEccCCCcccEEEecc-------CCCCCeeEEEEEeC
Confidence 468999999999999999999999999865421 11 1 1 22221111233444422 12346889999997
Q ss_pred ---CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 309 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 309 ---Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
|+++++++|+++|+++...|.....+.++.+||+|||||.||+....+
T Consensus 71 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~~ 121 (122)
T cd07265 71 DDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADKE 121 (122)
T ss_pred CHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEecc
Confidence 899999999999999987664433333578999999999999987654
No 77
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=4.8e-15 Score=117.50 Aligned_cols=117 Identities=23% Similarity=0.291 Sum_probs=85.7
Q ss_pred eeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcc--cccCCCceeEEEEEeCCH
Q 018011 233 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT--DYDKGNAYAQIAIGTDDV 310 (362)
Q Consensus 233 ~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~--~~~~g~g~~hiaf~v~Di 310 (362)
||.|.|.|++++++||+++|||++.......+ +..++.+..... ....+.+....... ....+.+..|++|.|+|+
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di 78 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS-PETSLVLAPPANPAAMSGLQPGGTPGLVLATDDI 78 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC-CeeEEEEeCCCCccccccccCCCceEEEEEehHH
Confidence 78999999999999999999999986644222 234444442211 13455554432221 112345788999999999
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 311 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 311 d~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
++++++|+++|+++..+|...++ ++.+|++||+||.|||+|
T Consensus 79 ~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 79 DATYEELKARGVEFSEEPREMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHHHhCCCEEeeccccCCC--ceEEEEECCCCCEEEEeC
Confidence 99999999999999988744443 589999999999999975
No 78
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=5.3e-15 Score=118.26 Aligned_cols=114 Identities=16% Similarity=0.195 Sum_probs=79.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEee----cCCCCCCcCCCCeEEEE
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTY----NYGVDKYDIGTGFGHFG 174 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~----~~~~~~~~~g~~~~hia 174 (362)
+++.|+.|.|.|++++++||+++|||++....+ . . ..+. ++ +.+.+.. .........+.+..|++
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~-~-~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 69 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----E-N-VTFE-GG----FALQEGYSWLEGISKADIIEKSNNFELY 69 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----c-e-EEEe-cc----ceeccchhhhccCCcccccccCCceEEE
Confidence 378999999999999999999999999864322 1 1 1111 11 1111110 00011112233557999
Q ss_pred EEeCCHHHHHHHHHHcCC-eeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 175 IAVDDVAKTVELIKAKGG-KVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 175 f~V~Dld~~~~~l~~~G~-~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
|.|+|+++++++|+++|+ ++..+|...+. +.+.+||+|||||+|||.+.
T Consensus 70 ~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~-g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 70 FEEEDFDAFLDKLKRYDNIEYVHPIKEHPW-GQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EEehhhHHHHHHHHhcCCcEEecCcccCCC-ccEEEEEECCCCCEEEEecc
Confidence 999999999999999986 67777776664 35789999999999999874
No 79
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.64 E-value=6.3e-15 Score=123.33 Aligned_cols=123 Identities=14% Similarity=0.162 Sum_probs=90.2
Q ss_pred CCCCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCC---CCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEE
Q 018011 227 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP---EYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQI 303 (362)
Q Consensus 227 ~~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hi 303 (362)
.+.+|+||.|.|+|++++++||+++|||++....... +....+.++..+. .+..+.+... ..+.++.|+
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~i~~~~~------~~~~g~~Hi 77 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNG--RHHSLALAEG------PGPKRIHHL 77 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCC--CCCCEEEEcC------CCCceeEEE
Confidence 3567999999999999999999999999986543221 1123444554422 2333444321 124679999
Q ss_pred EEEeCCHH---HHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccccc
Q 018011 304 AIGTDDVY---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 357 (362)
Q Consensus 304 af~v~Did---~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 357 (362)
+|.|+|++ +++++|+++|+++..+|..++.+..+.+|++||+|+.|||....+-
T Consensus 78 af~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~~~ 134 (154)
T cd07237 78 MLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGGRT 134 (154)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCceE
Confidence 99998754 6899999999999988877665556889999999999999876543
No 80
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.63 E-value=7.7e-15 Score=120.83 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=87.4
Q ss_pred ceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCC--
Q 018011 232 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 309 (362)
Q Consensus 232 ~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~D-- 309 (362)
.||.|.|+|++++.+||+++|||++..+... ...++.......+..+.+.. ....++.|++|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~-----~~~~l~~~~~~~~h~~~~~~-------~~~~gl~Hiaf~v~~~~ 68 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED-----RIVFMRCHPNPFHHTFAVGP-------ASSSHFHHVNFMVTDID 68 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC-----EEEEEEcCCCCCcceeeecc-------CCCCceEEEEEECCCHH
Confidence 4899999999999999999999998755321 23445433222233332211 234689999999976
Q ss_pred -HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccccccc
Q 018011 310 -VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDFLKE 360 (362)
Q Consensus 310 -id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~~~~ 360 (362)
+++++++|+++|+++..+|..++.+..+.+||+||||+.|||.-..+..++
T Consensus 69 ~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~~~~~ 120 (141)
T cd07258 69 DIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGMEEFAE 120 (141)
T ss_pred HHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcceecc
Confidence 467799999999999999887776556889999999999999887755543
No 81
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.63 E-value=1.7e-14 Score=115.53 Aligned_cols=115 Identities=21% Similarity=0.204 Sum_probs=84.3
Q ss_pred eeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCccc----ccCCCceeEEEEEeCC
Q 018011 234 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD----YDKGNAYAQIAIGTDD 309 (362)
Q Consensus 234 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~----~~~g~g~~hiaf~v~D 309 (362)
-.|.|.|++++++||+++||+++......+++......+..+ ...+.+........ .....+..|++|.|+|
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d 78 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG----DGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDD 78 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC----CEEEEEecCCCcccccccccCCCceEEEEEEECC
Confidence 468899999999999999999998665333433333334332 23344433222111 1234577899999999
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 310 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 310 id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
+++++++++++|++++.+|...+++ .+.++++|||||.|+|.+
T Consensus 79 ~d~~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 79 VDAHYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 9999999999999999998877764 488999999999999964
No 82
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.62 E-value=2.7e-14 Score=116.40 Aligned_cols=119 Identities=27% Similarity=0.403 Sum_probs=84.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeec-CCCceEEEEEeecCCCCCCcCCCCeEEEEEEeC
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYG-PEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g-~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~ 178 (362)
+|+||.|.|+|++++++||+++|||++...... ....++..+ .... .+.+.............+++|++|.|+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~----~~~~~~~~~~~~~~--~l~l~~~~~~~~~~~~~~~~h~~f~v~ 74 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL----GGLVFLSRDPDEHH--QIALITGRPAAPPPGPAGLNHIAFEVD 74 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC----CcEEEEEecCCCce--EEEEEecCCCCCCCCCCCceEEEEEeC
Confidence 589999999999999999999999998765431 123455544 2222 334433222111123457899999999
Q ss_pred CHH---HHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCC
Q 018011 179 DVA---KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPT 227 (362)
Q Consensus 179 Dld---~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~ 227 (362)
|++ +++++|.++|+++...+. .+..+.+||+||+|++|||....+.
T Consensus 75 ~~~~v~~~~~~l~~~G~~~~~~~~---~~~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 75 SLDDLRDLYERLRAAGITPVWPVD---HGNAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred CHHHHHHHHHHHHHCCCCccccCC---CCceeEEEEECCCCCEEEEEEcCCC
Confidence 854 688899999998875432 2345788999999999999977543
No 83
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.62 E-value=1.2e-14 Score=122.46 Aligned_cols=119 Identities=20% Similarity=0.256 Sum_probs=82.7
Q ss_pred CCCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEe
Q 018011 228 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 307 (362)
Q Consensus 228 ~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v 307 (362)
|.+|+||.|.|+|++++++||+++|||++......+.+.....++.... ....+.+.. ..+++..|++|.|
T Consensus 1 ~~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~--~~~~i~l~~-------~~~~~~~Hiaf~v 71 (161)
T cd07256 1 PQRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKG--GVHDTALTG-------GNGPRLHHVAFWV 71 (161)
T ss_pred CceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCC--CcceEEEec-------CCCCceeEEEEEc
Confidence 4578999999999999999999999999865433322322233343221 123333322 1245789999999
Q ss_pred CC---HHHHHHHHHHcCCe--eecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 308 DD---VYKTAEAIKLFGGK--VTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 308 ~D---id~~~~~l~~~G~~--v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
+| +++++++|+++|++ +..+|+.+.....+.+|++|||||.||++...
T Consensus 72 ~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 72 PEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred CCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 85 77888999999986 33445444433346799999999999998644
No 84
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.62 E-value=2.2e-14 Score=116.65 Aligned_cols=116 Identities=18% Similarity=0.244 Sum_probs=86.5
Q ss_pred ceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHH
Q 018011 232 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVY 311 (362)
Q Consensus 232 ~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did 311 (362)
+||.|.|.|++++++||+++||+++......+ +.....++..++ .+..+.+.... ..++..|++|.|+|++
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~~~~------~~~~~~hl~~~v~d~~ 71 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDE--DHHDLALFPGP------ERPGLHHVAFEVESLD 71 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCC--CcceEEEEcCC------CCCCeeEEEEEcCCHH
Confidence 58999999999999999999999987554333 222344444322 23344443311 1567899999999874
Q ss_pred ---HHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 312 ---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 312 ---~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
+++++|+++|+++..+|...+.+..+.++++|||||.|||.+...
T Consensus 72 ~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 72 DILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 688999999999998877666544578899999999999998664
No 85
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.62 E-value=1.5e-14 Score=115.72 Aligned_cols=116 Identities=20% Similarity=0.307 Sum_probs=84.5
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCc---ccccCCCceeEEEEE
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGV---TDYDKGNAYAQIAIG 306 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~---~~~~~g~g~~hiaf~ 306 (362)
+++|+.|.|.|++++++||+++|||+.....+.+ .+..+..+ +..+++...... .....+.+..|++|.
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~ 74 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKALRFG------SQKINLHPVGGEFEPAAGSPGPGSDDLCLI 74 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceEEEeC------CEEEEEecCCCccCcCccCCCCCCceEEEE
Confidence 5899999999999999999999999987543221 12222222 244555442221 112234678999999
Q ss_pred eCC-HHHHHHHHHHcCCeeecCCcccCC--CCceEEEEECCCCCeEEEEc
Q 018011 307 TDD-VYKTAEAIKLFGGKVTREPGPLPG--INTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 307 v~D-id~~~~~l~~~G~~v~~~p~~~~~--~~~~~~~~~DPdG~~iel~~ 353 (362)
+++ +++++++|+++|+++..+|....+ +.++.+||+|||||.||+.+
T Consensus 75 ~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 75 TEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred ecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 974 999999999999999888765432 22478999999999999986
No 86
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.62 E-value=1.9e-14 Score=115.56 Aligned_cols=115 Identities=23% Similarity=0.293 Sum_probs=80.9
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecC--------Cc--ccccCCCce
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNY--------GV--TDYDKGNAY 300 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~--------~~--~~~~~g~g~ 300 (362)
+.|+.|.|.|++++.+||+++|||++..... +..|..+ ..+ ...+.+.... .. ......++.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYGEL--ETG----ETTLAFASHDLAESNLKGGFVKADPAQPPAG 72 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEEEe--cCC----cEEEEEEcccccccccccCccCCccccCCCc
Confidence 4689999999999999999999999864322 1223221 111 1222221110 00 011122345
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 301 AQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 301 ~hiaf~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
.|++|.|+|+++++++++++|+++..+|...+++ .+.++++|||||.||++++
T Consensus 73 ~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 7999999999999999999999999888777765 4788999999999999875
No 87
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.61 E-value=1.3e-14 Score=116.30 Aligned_cols=109 Identities=28% Similarity=0.459 Sum_probs=79.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeC-
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD- 178 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~- 178 (362)
+|+||.|.|+|++++.+||+++|||++....+ ...++..++ ..+.+.+.... ...++..|++|.++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~------~~~~~~~~~--~~~~l~~~~~~-----~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD------KGAYLEAGD--LWLCLSVDANV-----GPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC------CceEEecCC--EEEEEecCCCC-----CCCCCeeeEEEEeCH
Confidence 58999999999999999999999999876543 123444432 22233222211 12347889999994
Q ss_pred -CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecC
Q 018011 179 -DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 179 -Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
|+++++++|+++|+++..++.. .++.+||+|||||.|||....
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~----~~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS----EGDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC----CccEEEEECCCCCEEEEEeCC
Confidence 7999999999999987654322 235789999999999999653
No 88
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.61 E-value=2e-14 Score=114.55 Aligned_cols=111 Identities=21% Similarity=0.228 Sum_probs=79.5
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCC--C---CCcCCCCeEEEEEEe
Q 018011 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--D---KYDIGTGFGHFGIAV 177 (362)
Q Consensus 103 hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~--~---~~~~g~~~~hiaf~V 177 (362)
++.|.|+|++++++||+++|||++....+ ....+..++. .+.+.+...... . ....+.++ |++|.|
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~------~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~-~~~~~v 74 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD------WYVSLRSPDG--GVELAFMLPGHETVPAAQYQFQGQGL-ILNFEV 74 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC------cEEEEecCCC--ceEEEEccCCCCCCcchhcccCCceE-EEEEEE
Confidence 56799999999999999999999876532 1233433332 233443321111 1 11223344 899999
Q ss_pred CCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 178 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 178 ~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
+|+++++++|+++|+++..+|...+.| .+.++++||+|++|||++
T Consensus 75 ~did~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 75 DDVDAEYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CCHHHHHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 999999999999999988777666543 678899999999999985
No 89
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.61 E-value=1.7e-14 Score=118.62 Aligned_cols=115 Identities=22% Similarity=0.294 Sum_probs=84.9
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC-
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 308 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~- 308 (362)
++.|+.|.|+|++++++||+++||+++..... ...++..+ +..+.+...........+.+..|++|.++
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~----g~~l~l~~~~~~~~~~~~~~~~hiaf~v~~ 73 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN----GLWIALNEEKDIPRNEIHQSYTHIAFSIEE 73 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC----CeEEEeeccCCCCCccCCCCeeEEEEEecH
Confidence 58999999999999999999999999864321 12233322 34454433222111122346789999997
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 309 -DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 309 -Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
|+++++++|+++|+++..+|...+.+ ++.+|++|||||.|||.+..
T Consensus 74 ~dv~~~~~~l~~~G~~i~~~~~~~~~~-~~~~~~~DPdGn~iEl~~~~ 120 (139)
T PRK04101 74 EDFDHWYQRLKENDVNILPGRERDERD-KKSIYFTDPDGHKFEFHTGT 120 (139)
T ss_pred HHHHHHHHHHHHCCceEcCCccccCCC-ceEEEEECCCCCEEEEEeCC
Confidence 99999999999999998777655543 58999999999999998755
No 90
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.61 E-value=2.7e-15 Score=120.48 Aligned_cols=118 Identities=27% Similarity=0.339 Sum_probs=81.5
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeec--CCCCceEEEEeccCCCCcceEEEEeecCCcccccCCC-----ceeE
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRD--NPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGN-----AYAQ 302 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~-----g~~h 302 (362)
+|+||++.|.|++++++||+++|||++..... ..........+..+ ...+.+...........+. +.+|
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 76 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG----EGHIELFLNPSPPPRASGHSFPEHGGHH 76 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST----SSCEEEEEEESSSSSSEEEHHHSHTSEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc----ccceeeeeecccccccccccccccccee
Confidence 47899999999999999999999999987765 22233344444433 2233333322211111111 2345
Q ss_pred EEEE---eCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 018011 303 IAIG---TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 351 (362)
Q Consensus 303 iaf~---v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel 351 (362)
+++. ++|+++++++|++.|+++..+|.....+....+|++||+||.|||
T Consensus 77 i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 77 IAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred EEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 5555 567889999999999999999877776554556899999999997
No 91
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.60 E-value=1.4e-14 Score=113.56 Aligned_cols=113 Identities=25% Similarity=0.206 Sum_probs=81.5
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCccc-ccCCCceeEEEEEeCC
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTDD 309 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~g~g~~hiaf~v~D 309 (362)
|+|++|.|+|++++.+||+++|||++......+. ... ++..++ ...+++........ ...+.+..|++|.|+|
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~-~~~--~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d 74 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF-PGA--WLYAGD---GPQLHLIEEDPPDALPEGPGRDDHIAFRVDD 74 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC-Cce--EEEeCC---CcEEEEEecCCCccccCCCcccceEEEEeCC
Confidence 6899999999999999999999999865432221 112 232222 23455554322211 1234567899999999
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 018011 310 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 351 (362)
Q Consensus 310 id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel 351 (362)
+++++++++++|+++..++...++ ++.++++||+||.|||
T Consensus 75 ~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 75 LDAFRARLKAAGVPYTESDVPGDG--VRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHHHHHHHcCCCcccccCCCCC--ccEEEEECCCCCEEeC
Confidence 999999999999999887754222 5789999999999996
No 92
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.60 E-value=2.2e-14 Score=115.49 Aligned_cols=119 Identities=23% Similarity=0.358 Sum_probs=85.8
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCC-CCceEEEEeccCCCCcceEEEEeecCCcc-c-----ccCCCceeEE
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNP-EYKYTIAMMGYGPEDKNVVLELTYNYGVT-D-----YDKGNAYAQI 303 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~l~~~~~~~-~-----~~~g~g~~hi 303 (362)
|+||+|.|.|++++++||+++|||++....... +.....+++..+ +..+++....... . ...+++..|+
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~----~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~ 76 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG----NVQIELIEPLDDDSPIAKFLEKRGEGLHHI 76 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC----CEEEEEEEECCCCCcHHHHHhcCCCceEEE
Confidence 579999999999999999999999997654432 233445555532 4566665432211 1 1346788999
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCC--CCeEEEEc
Q 018011 304 AIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPD--GWKTVFVD 353 (362)
Q Consensus 304 af~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPd--G~~iel~~ 353 (362)
+|.|+|+++++++++++|+++..+|.....++.++.++.||+ |+.|||++
T Consensus 77 ~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 77 AFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred EEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999999999988764444333444444455 99999985
No 93
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.60 E-value=1.4e-14 Score=115.89 Aligned_cols=113 Identities=16% Similarity=0.246 Sum_probs=80.4
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEee----cCCcccccCCCceeEEEE
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTY----NYGVTDYDKGNAYAQIAI 305 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~----~~~~~~~~~g~g~~hiaf 305 (362)
++.++.|.|.|++++++||+++||+++....+ . + .. +.. ...+.+.. .........+.+..|++|
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~--~--~-~~-~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG--E--N-VT-FEG-----GFALQEGYSWLEGISKADIIEKSNNFELYF 70 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccC--c--e-EE-Eec-----cceeccchhhhccCCcccccccCCceEEEE
Confidence 46789999999999999999999999864221 1 1 11 111 11111111 001111223445689999
Q ss_pred EeCCHHHHHHHHHHcCC-eeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 306 GTDDVYKTAEAIKLFGG-KVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 306 ~v~Did~~~~~l~~~G~-~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
.|+|+++++++|+++|+ +++.+|...+++ .+.++|+|||||.|||.+.
T Consensus 71 ~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g-~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 71 EEEDFDAFLDKLKRYDNIEYVHPIKEHPWG-QRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred EehhhHHHHHHHHhcCCcEEecCcccCCCc-cEEEEEECCCCCEEEEecc
Confidence 99999999999999986 788888777764 4899999999999999875
No 94
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.60 E-value=3.3e-14 Score=114.18 Aligned_cols=117 Identities=19% Similarity=0.252 Sum_probs=78.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEee---c----CC-CCCCcCCCCeEE
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTY---N----YG-VDKYDIGTGFGH 172 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~---~----~~-~~~~~~g~~~~h 172 (362)
|.|+.|.|+|++++++||+++|||++..... .+.+. .+..+ ...+.+.... . .. ........+..|
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYG--ELETG--ETTLAFASHDLAESNLKGGFVKADPAQPPAGFE 74 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEE--EecCC--cEEEEEEcccccccccccCccCCccccCCCcEE
Confidence 5799999999999999999999999865432 11221 11111 1111111110 0 00 011111224458
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 173 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 173 iaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
++|.|+|+++++++++++|+++..+|...+.| .+.++++||||+.||+++.
T Consensus 75 ~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 75 IAFVTDDVAAAFARAVEAGAVLVSEPKEKPWG-QTVAYVRDINGFLIELCSP 125 (125)
T ss_pred EEEEcCCHHHHHHHHHHcCCEeccCCccCCCC-cEEEEEECCCCCEEEEecC
Confidence 99999999999999999999998877666654 5678999999999999863
No 95
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.60 E-value=2.2e-14 Score=115.05 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=83.7
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCC-ceEEEEeccCCCCcceEEEEeecCCccc--ccCCCceeEEEEE
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY-KYTIAMMGYGPEDKNVVLELTYNYGVTD--YDKGNAYAQIAIG 306 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~l~~~~~~~~--~~~g~g~~hiaf~ 306 (362)
+|+||.|.|.|++++++||+++|||++.......+. ....+++.......+..++|........ .....+..|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998766443221 1122233322112345677765432211 1122467899999
Q ss_pred eC---CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 018011 307 TD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 352 (362)
Q Consensus 307 v~---Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~ 352 (362)
|+ |+++++++++++|+++..++.. . .++.+|++||+||.|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH-F--GERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee-c--ceEEEEEECCCCCEEEeC
Confidence 98 5799999999999998764432 2 258899999999999985
No 96
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.60 E-value=5.5e-14 Score=112.22 Aligned_cols=115 Identities=22% Similarity=0.224 Sum_probs=85.0
Q ss_pred eeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcc--cccCCCceeEEEEEeCCHH
Q 018011 234 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT--DYDKGNAYAQIAIGTDDVY 311 (362)
Q Consensus 234 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~--~~~~g~g~~hiaf~v~Did 311 (362)
..|.|.|++++.+||+++||+++......+++.+....+..+ +..+.+....... ....+.+..|++|.|+|++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 80 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG----DSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVD 80 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC----CEEEEEecCCcccCCCCCCCCceEEEEEEeCCHH
Confidence 357899999999999999999988665444444444444332 2345554322110 1123456789999999999
Q ss_pred HHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 312 KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 312 ~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
++++++.+.|++++.+|...+++ .+.++++|||||.|+|.+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 81 ATFARAVAAGATSVMPPADQFWG-DRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHCCCeEecCccccccc-ceEEEEECCCCCEEEEec
Confidence 99999999999999888766654 489999999999999986
No 97
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.59 E-value=2.3e-14 Score=113.03 Aligned_cols=109 Identities=25% Similarity=0.411 Sum_probs=78.5
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeC--CH
Q 018011 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD--DV 180 (362)
Q Consensus 103 hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~--Dl 180 (362)
||.|.|+|++++++||+++|||++..+.+ ...++..++ ..+.+....... ..+.+.+|++|.|+ |+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~------~~~~~~~~~----~~l~~~~~~~~~--~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS------KEAYFELAG----LWICLMEEDSLQ--GPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC------ceeEEEecC----eEEEeccCCCcC--CCCCCccEEEEEcCHHHH
Confidence 89999999999999999999999876543 223444332 233433322111 12346789999995 69
Q ss_pred HHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 181 AKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 181 d~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
++++++|+++|+++...+.... +.++.+|++||+|+.||+...
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQ-GEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred HHHHHHHHHcCCccCCCccccC-CCceEEEEECCCCCEEEEEeC
Confidence 9999999999999864432222 346789999999999999864
No 98
>PRK06724 hypothetical protein; Provisional
Probab=99.59 E-value=2.5e-14 Score=115.77 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=77.4
Q ss_pred CCcceeeeeeCChHHHHHHHHHhh---CCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEE
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAF---GMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAI 305 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~L---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf 305 (362)
..++||.|.|.|+++|++||+++| |++.........+ ...+.+..... ......+..|++|
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~~~~g--------------~~~l~l~~~~~--~~~~~~g~~h~af 69 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVAYSTG--------------ESEIYFKEVDE--EIVRTLGPRHICY 69 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEeeeCC--------------CeeEEEecCCc--cccCCCCceeEEE
Confidence 469999999999999999999966 6665321111111 11222211111 0112346789999
Q ss_pred Ee---CCHHHHHHHHHHcCCeeecCCcccCC-CCc-eEEEEECCCCCeEEEEccc
Q 018011 306 GT---DDVYKTAEAIKLFGGKVTREPGPLPG-INT-KITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 306 ~v---~Did~~~~~l~~~G~~v~~~p~~~~~-~~~-~~~~~~DPdG~~iel~~~~ 355 (362)
.| +|+|+++++|+++|+++..+|...+. +.+ +.+||+|||||.||++..+
T Consensus 70 ~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 124 (128)
T PRK06724 70 QAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYTP 124 (128)
T ss_pred ecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeCC
Confidence 98 68999999999999999888865442 223 7789999999999998764
No 99
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.59 E-value=1.1e-13 Score=110.78 Aligned_cols=116 Identities=21% Similarity=0.231 Sum_probs=81.8
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCC--CcCCCCeEEEEEEeCCHHH
Q 018011 105 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK--YDIGTGFGHFGIAVDDVAK 182 (362)
Q Consensus 105 ~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~--~~~g~~~~hiaf~V~Dld~ 182 (362)
.|.|+|++++++||+++|||++........+......+..++ ..+.+.......... ...+.+..|++|.|+|+++
T Consensus 4 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~ 81 (122)
T cd08355 4 TLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGD--GGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDA 81 (122)
T ss_pred EEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECC--EEEEEecCCCcccccccccCCCceEEEEEEECCHHH
Confidence 489999999999999999999987653333332233455442 223232221111110 1233466789999999999
Q ss_pred HHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 183 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 183 ~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
++++|+++|+++..+|...+.| .+.++++|||||+|+|.+
T Consensus 82 ~~~~l~~~G~~v~~~~~~~~~g-~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 82 HYERARAAGAEILREPTDTPYG-SREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHCCCEEeeCccccCCC-cEEEEEECCCCCEEEEec
Confidence 9999999999999888776654 567899999999999974
No 100
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.59 E-value=3.9e-14 Score=118.85 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=84.1
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCccc-ccCCCceeEEEEEeC
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTD 308 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~g~g~~hiaf~v~ 308 (362)
+++||.|.|+|++++.+||+++|||++..... ..+. +...+. ..+..+.+........ .....++.|++|.|+
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~~~--~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~ 74 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---DRVR--LEEGGG-GPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVP 74 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CEEE--EEecCC-CCCCEEEEEeCCCCCCCcccCCceEEEEEECC
Confidence 47899999999999999999999999875532 1122 222211 2256677765422211 122356889999999
Q ss_pred C---HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 309 D---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 309 D---id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
| +++++++|+++|+++. .+....+ .+.+||+|||||.|||+...
T Consensus 75 d~~dvd~~~~~L~~~Gv~~~-~~~~~~~--~~s~yf~DPdG~~iEl~~~~ 121 (157)
T cd08347 75 DDEELEAWKERLEALGLPVS-GIVDRFY--FKSLYFREPGGILFEIATDG 121 (157)
T ss_pred CHHHHHHHHHHHHHCCCCcc-ccccccc--EEEEEEECCCCcEEEEEECC
Confidence 8 8999999999999864 3333333 47899999999999999854
No 101
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.59 E-value=4.9e-14 Score=113.03 Aligned_cols=114 Identities=26% Similarity=0.348 Sum_probs=79.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHh---cCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEe
Q 018011 101 MLHVVYRVGDLDRTIKFYTEC---LGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~v---LG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V 177 (362)
|+||.|.|+|++++++||+++ |||+...+.. .. . +++..+.....+. +......... ...+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~---~~-~-~~~~~~~~~~~~~--l~~~~~~~~~-~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDG---PG-A-VGYGKGGGGPDFW--VTKPFDGEPA-TAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecC---Cc-e-eEeccCCCCceEE--EeccccCCCC-CCCCceEEEEEC
Confidence 589999999999999999999 6998875531 11 1 2233322233333 3332211111 222457999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeeccC--CCEEEEEEECCCCCEEEEE
Q 018011 178 DD---VAKTVELIKAKGGKVTREPGPVKG--GNTVIAFIEDPDGYKFELL 222 (362)
Q Consensus 178 ~D---ld~~~~~l~~~G~~~~~~p~~~~~--g~~~~~~~~DPdG~~~el~ 222 (362)
+| ++++.++++++|+++..+|...+. ...+.+||+||+||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 97 788999999999998877765542 3455789999999999996
No 102
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.58 E-value=4.7e-14 Score=111.44 Aligned_cols=121 Identities=26% Similarity=0.297 Sum_probs=91.5
Q ss_pred CCCCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEE
Q 018011 227 TPEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 306 (362)
Q Consensus 227 ~~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~ 306 (362)
.+..+.|..|.+.|++++++||+++|||+..+..+..+..|....... ... +..+.-.. ....+.+.+++.|.
T Consensus 6 ~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~-~~~-gG~l~~~~-----~~~p~~~~~~iy~~ 78 (127)
T COG3324 6 EKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADG-AGA-GGGLMARP-----GSPPGGGGWVIYFA 78 (127)
T ss_pred cCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCC-ccc-cceeccCC-----cCCCCCCCEEEEEe
Confidence 356789999999999999999999999999766544444444433332 111 22221111 12223677999999
Q ss_pred eCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 307 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 307 v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
|+|++++.++++++|++|+.++...|++ ++++.+.||+||+|.|.++.
T Consensus 79 v~did~~l~rv~~~GG~V~~p~~~~p~~-G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 79 VDDIDATLERVVAAGGKVLRPKTEFPGG-GRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred cCChHHHHHHHHhcCCeEEecccccCCc-eEEEEEECCCCCEEEEeecC
Confidence 9999999999999999999999988864 69999999999999998754
No 103
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.58 E-value=3.5e-14 Score=115.47 Aligned_cols=114 Identities=21% Similarity=0.265 Sum_probs=81.8
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC--
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD-- 308 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~-- 308 (362)
|+||.|.|.|++++++||+++|||++.... +. .. ++..+ +..+.+.............+..|++|.++
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~--~~--~~--~~~~~----~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~ 70 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG--EK--TA--YFTIG----GTWLALNEEPDIPRNEIRQSYTHIAFTIEDS 70 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC--Cc--cc--eEeeC----ceEEEEEccCCCCcCCcCccceEEEEEecHH
Confidence 689999999999999999999999985431 11 11 22221 34555544322111122346889999997
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 309 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 309 Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
|+++++++|+++|+++..++..... .++.+||+|||||.|||.+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~-~~~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVR-DRKSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccC-cceEEEEECCCCCEEEEecCc
Confidence 4999999999999998765543333 258899999999999999865
No 104
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.58 E-value=8e-14 Score=112.52 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=85.2
Q ss_pred CcceeeeeeCChHHHHHHHHHhh---CCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCccc---ccCCCceeEE
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAF---GMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD---YDKGNAYAQI 303 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~L---G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~---~~~g~g~~hi 303 (362)
+|+||.+.|.|++++.+||+++| ||++....+ + ...+... ..+..+.+........ ...+.+..|+
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~g~~hi 72 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRSWRAG-----DGGTYLVLQQADGESAGRHDRRNPGLHHL 72 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-CceEEec-----CCceEEEEEecccCCCcccccCCcCeeEE
Confidence 47999999999999999999999 999876532 1 1122211 1246666655332211 1234578999
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCccc--CCCCceEEEEECCCCCeEEEEcc
Q 018011 304 AIGTD---DVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 304 af~v~---Did~~~~~l~~~G~~v~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
+|.|. |+++++++|+++|+++...+... ....++.+|++|||||+|||+.+
T Consensus 73 a~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 73 AFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 99997 58999999999999999877643 22235899999999999999854
No 105
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.58 E-value=7e-14 Score=111.63 Aligned_cols=111 Identities=28% Similarity=0.441 Sum_probs=78.9
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCC--
Q 018011 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD-- 179 (362)
Q Consensus 102 ~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~D-- 179 (362)
.||.|.|+|++++++||+++||++.....+ . ...|.. ++. .+.+.+...... ..+++.|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~-~~~~~~-~~~--~~~~~~~~~~~~----~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----D-YAKFLL-EDP--RLNFVLNERPGA----PGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----C-eeEEEe-cCC--ceEEEEecCCCC----CCCCeeEEEEEeCCHH
Confidence 599999999999999999999998865532 1 122322 222 223333322111 11488999999997
Q ss_pred -HHHHHHHHHHcCCeeecCCeecc-CCCEEEEEEECCCCCEEEEEec
Q 018011 180 -VAKTVELIKAKGGKVTREPGPVK-GGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 180 -ld~~~~~l~~~G~~~~~~p~~~~-~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+++++++|.++|+++..++.... .+..+.+|++||+|+.|||+..
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 88999999999999876654332 2235679999999999999975
No 106
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.58 E-value=6.2e-14 Score=111.97 Aligned_cols=113 Identities=27% Similarity=0.393 Sum_probs=80.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCC------CCcCCCCeEEEE
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD------KYDIGTGFGHFG 174 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~------~~~~g~~~~hia 174 (362)
|.||.|.|.|++++++||+++|||++..+. .+ ...++..++. .. +.+....... ......+.+|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~--~~~~l~~~~~-~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DR--RLAFFWVGGR-GM--LLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CC--ceEEEEcCCC-cE--EEEEecCCcccccCCCCCCCCCCccEEE
Confidence 568999999999999999999999987641 11 2355665543 22 2222211100 111234788999
Q ss_pred EEeC--CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 175 IAVD--DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 175 f~V~--Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
|.++ |++++++++.++|+++...+. . .+.++.+||+||+|+.+||++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~-~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-W-PRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-C-CCCeeEEEEECCCCCEEEEec
Confidence 9995 799999999999999876543 2 234677999999999999986
No 107
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.57 E-value=6.1e-14 Score=115.98 Aligned_cols=116 Identities=16% Similarity=0.294 Sum_probs=84.7
Q ss_pred CCCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEe
Q 018011 228 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 307 (362)
Q Consensus 228 ~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v 307 (362)
+.++.|+.|.|.|++++++||+++|||++..... . ...++..+. .+..+.+... ...+..|++|.|
T Consensus 2 ~~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~l~~~~--~~~~~~l~~~-------~~~~~~hiaf~v 67 (144)
T cd07239 2 PVKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG---D--QMAFLRCNS--DHHSIAIARG-------PHPSLNHVAFEM 67 (144)
T ss_pred CceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC---C--eEEEEECCC--CcceEEEccC-------CCCceEEEEEEC
Confidence 3468999999999999999999999999864321 1 122344322 1334444221 135788999999
Q ss_pred CCHHHHH---HHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccccc
Q 018011 308 DDVYKTA---EAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 357 (362)
Q Consensus 308 ~Did~~~---~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 357 (362)
+|++++. ++|+++|+++..+|.....+..+++||+||+||.|||++....
T Consensus 68 ~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~~ 120 (144)
T cd07239 68 PSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELEQ 120 (144)
T ss_pred CCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCceE
Confidence 9887775 8999999999877755444445778999999999999987643
No 108
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.57 E-value=6.1e-14 Score=110.74 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=74.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEE--EEE
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHF--GIA 176 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hi--af~ 176 (362)
++|+||.|.|+|++++++||+ +|||++..+.+ . .++...+.. +..+.+.... ..++.|+ ++.
T Consensus 1 ~~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~------~-~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~ 64 (112)
T cd08344 1 HSIDHFALEVPDLEVARRFYE-AFGLDVREEGD------G-LELRTAGND-HRWARLLEGA-------RKRLAYLSFGIF 64 (112)
T ss_pred CceeEEEEecCCHHHHHHHHH-HhCCcEEeecC------c-eEEEecCCC-ceEEEeecCC-------CCceeeEEEEeE
Confidence 479999999999999999997 69999875432 1 222222222 2333333211 2244554 455
Q ss_pred eCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 177 VDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 177 V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
++|+++++++|+++|+++..++ .. +..+.+||+||+||.|||...
T Consensus 65 ~~d~~~~~~~l~~~Gi~~~~~~--~~-~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 65 EDDFAAFARHLEAAGVALAAAP--PG-ADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhhHHHHHHHHHHcCCceecCC--Cc-CCCCEEEEECCCCCEEEEecC
Confidence 5799999999999999987654 22 224468999999999999854
No 109
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=124.77 Aligned_cols=220 Identities=20% Similarity=0.231 Sum_probs=142.4
Q ss_pred cceeeEEEEEeCCH-HHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCC--CCC--CcCCCCeEE
Q 018011 98 KRRMLHVVYRVGDL-DRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG--VDK--YDIGTGFGH 172 (362)
Q Consensus 98 i~~l~hV~l~v~d~-~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~--~~~--~~~g~~~~h 172 (362)
..++.+|++.|+|+ ++...++. .|||+...+.-.. ....++.|+ +.+.+..... ... ..+|+++.-
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~~-~lGF~~~~~Hrsk----~v~l~rQGd----inlvvn~~~~s~a~~f~~~Hgps~~a 90 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALLG-QLGFTAVAKHRSK----AVTLYRQGD----INLVVNAEPDSFAAEFLDKHGPSACA 90 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHHH-HhCcccccccccc----ceeEEEeCC----EEEEEcCCCcchhhHHHHhcCCchhe
Confidence 45899999999999 55555555 5999987654321 112223232 2333332211 112 138899999
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCe---e--cc---CCCEEEEEEECCCCCE----EEEEecC--C--C---CCCcce
Q 018011 173 FGIAVDDVAKTVELIKAKGGKVTREPG---P--VK---GGNTVIAFIEDPDGYK----FELLERG--P--T---PEPLCQ 233 (362)
Q Consensus 173 iaf~V~Dld~~~~~l~~~G~~~~~~p~---~--~~---~g~~~~~~~~DPdG~~----~el~~~~--~--~---~~~i~~ 233 (362)
++|+|+|...++++.++.|++....+. + ++ +-++..+||.|..|.. .++...+ . . ...|+|
T Consensus 91 ~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDH 170 (363)
T COG3185 91 MAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDH 170 (363)
T ss_pred eEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeech
Confidence 999999999999999999995433221 1 11 1134568888887411 2222221 1 1 126899
Q ss_pred eeeeeC--ChHHHHHHHHHhhCCeeeeeecCCCC---ceEEEEeccCCCCcceEEEEeecCCccc-------ccCCCcee
Q 018011 234 VMLRVG--DLDRSINFYEQAFGMELLRKRDNPEY---KYTIAMMGYGPEDKNVVLELTYNYGVTD-------YDKGNAYA 301 (362)
Q Consensus 234 v~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~l~l~~~~~~~~-------~~~g~g~~ 301 (362)
++++|. .++.+..||+++|||+.....+.++. -++-++... +....|.|........ ...|.|++
T Consensus 171 l~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp---~G~vrlplN~s~~~~sqi~efl~~y~G~GIQ 247 (363)
T COG3185 171 LTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSP---CGKVRLPLNESADDKSQIGEFLREYRGEGIQ 247 (363)
T ss_pred hhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecC---CCcEEeecccCCCchhHHHHHHHHhCCCcce
Confidence 999885 89999999999999999877665432 222232221 2223333333222111 24788999
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCc
Q 018011 302 QIAIGTDDVYKTAEAIKLFGGKVTREPG 329 (362)
Q Consensus 302 hiaf~v~Did~~~~~l~~~G~~v~~~p~ 329 (362)
||||.++||.+++++++++|+++...|.
T Consensus 248 HIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 248 HIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred EEEecccHHHHHHHHHHHcCCccCCCch
Confidence 9999999999999999999999998774
No 110
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.57 E-value=1.8e-13 Score=109.22 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=83.7
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCC--CCCcCCCCeEEEEEEeCCHHH
Q 018011 105 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGV--DKYDIGTGFGHFGIAVDDVAK 182 (362)
Q Consensus 105 ~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~--~~~~~g~~~~hiaf~V~Dld~ 182 (362)
.|.|.|++++++||+++|||++......+.+.+....+..++. .+.+....+. .....+.+..|++|.|+|+++
T Consensus 6 ~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~~ 81 (122)
T cd07246 6 YLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDS----VLMLADEFPEHGSPASWGGTPVSLHLYVEDVDA 81 (122)
T ss_pred EEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCE----EEEEecCCcccCCCCCCCCceEEEEEEeCCHHH
Confidence 4899999999999999999999877653444434444554432 2333322111 011223467799999999999
Q ss_pred HHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 183 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 183 ~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+++++.+.|+++..++...+. +.+.++++||+|++|+|.++
T Consensus 82 ~~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 82 TFARAVAAGATSVMPPADQFW-GDRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHHHHCCCeEecCcccccc-cceEEEEECCCCCEEEEecC
Confidence 999999999999888765554 46788999999999999864
No 111
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.57 E-value=7e-14 Score=109.21 Aligned_cols=108 Identities=25% Similarity=0.292 Sum_probs=76.3
Q ss_pred EEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCHHHHHH
Q 018011 106 YRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTVE 185 (362)
Q Consensus 106 l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dld~~~~ 185 (362)
|.|+|++++++||+++|||++....+ ....+..+.....-...+.... .......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP------DYVDFSLGFRFHDGVIEFLQFP--DPPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET------SEEEEEETEEEEEEEEEEEEEE--SSSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC------CeEEEEeccchhhhhHHHccCC--ccccCCCceeEEEEEEcCHHHHHH
Confidence 68999999999999999999988543 2233333211000011222211 122235578899999999999999
Q ss_pred HHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEE
Q 018011 186 LIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (362)
Q Consensus 186 ~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~ 222 (362)
+++++|+++..+|...+. +.+.+++.||+|+.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~-g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPW-GQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETT-SEEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCC-CeEEEEEECCCCCEEEeC
Confidence 999999999888777655 468899999999999986
No 112
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.57 E-value=6.6e-14 Score=112.47 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=81.3
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC-
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 308 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~- 308 (362)
.+.|+.|.|.|+++|++||+++|||++.... +.+..+.+. + +..+.+... ....+..|++|.++
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~~~~~~--~---~~~l~~~~~------~~~~~~~h~a~~v~~ 68 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFAVVKLD--N---GVSLDFAQP------DGEIPPQHYAFLVSE 68 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEEEEEcC--C---CcEEEEecC------CCCCCcceEEEEeCH
Confidence 5789999999999999999999999986522 113222222 1 344554332 11234689999886
Q ss_pred -CHHHHHHHHHHcCCeeecCCccc------CCCCceEEEEECCCCCeEEEEccc
Q 018011 309 -DVYKTAEAIKLFGGKVTREPGPL------PGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 309 -Did~~~~~l~~~G~~v~~~p~~~------~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
|+++++++|+++|+++...|... ...+++.+||+|||||.|||++.+
T Consensus 69 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~~ 122 (123)
T cd08351 69 EEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITRP 122 (123)
T ss_pred HHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEecc
Confidence 69999999999999998776543 122358999999999999999863
No 113
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.57 E-value=7.6e-14 Score=111.98 Aligned_cols=113 Identities=24% Similarity=0.346 Sum_probs=76.0
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCC----CCC-CcCCCCeEEEE--E
Q 018011 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG----VDK-YDIGTGFGHFG--I 175 (362)
Q Consensus 103 hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~----~~~-~~~g~~~~hia--f 175 (362)
||.|.|+|++++++||+++|||++..... . ...+..++ ..+.+.+..... ... .....+..|++ +
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~--~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----T--WVDFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----C--cccccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999865422 1 12222222 233333322110 000 11122456765 4
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeecc---CCCEEEEEEECCCCCEEEEEe
Q 018011 176 AVDDVAKTVELIKAKGGKVTREPGPVK---GGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 176 ~V~Dld~~~~~l~~~G~~~~~~p~~~~---~g~~~~~~~~DPdG~~~el~~ 223 (362)
.++|+++++++|+++|+++..+|.... .+..+.+||+|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 567899999999999999987765432 234688999999999999975
No 114
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.57 E-value=1.2e-13 Score=108.93 Aligned_cols=108 Identities=21% Similarity=0.248 Sum_probs=78.5
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCHHHH
Q 018011 104 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKT 183 (362)
Q Consensus 104 V~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dld~~ 183 (362)
..|.|+|++++++||+++|||+..... . ...++..++. .++.+.+..... .+....|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~-----~-~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDH-----G-WIATFASPQN-MTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcC-----C-ceEEEeecCC-CCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 358999999999999999999986432 1 2334443332 123344433211 122456999999999999
Q ss_pred HHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 184 VELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 184 ~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+++|+++|+++..+|..... +.+.+|+.||+||.|+|.++
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~-g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPW-GVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHhcCCeEecCCccCCC-ceEEEEEECCCCCEEEEEEc
Confidence 99999999999887766554 35678999999999999975
No 115
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.56 E-value=5.1e-14 Score=112.57 Aligned_cols=115 Identities=23% Similarity=0.205 Sum_probs=82.1
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEe-
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT- 307 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v- 307 (362)
.++.|+.|.|+|++++++||+++|||++....+ .+. ++.......+..+.+.. ...++..|++|.|
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~hi~~~v~ 69 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DRI--YLRGLEEFIHHSLVLTK-------APVAGLGHIAFRVR 69 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----CeE--EEEecCCCceEEEEEee-------CCCCceeEEEEECC
Confidence 368999999999999999999999999864421 122 22211111233333322 1235789999998
Q ss_pred --CCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 308 --DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 308 --~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
+|+++++++++++|+++...|.....+.++.+|+.|||||+||++...+
T Consensus 70 ~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~~ 120 (121)
T cd07266 70 SEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEMD 120 (121)
T ss_pred CHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEeccc
Confidence 4789999999999999987654443333478999999999999986543
No 116
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.56 E-value=5.6e-14 Score=112.45 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=80.4
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 308 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~ 308 (362)
.+|+|+.|.|+|++++.+||+++||+++..+.+ .. +++...+...+..+.+.. ....+..|++|.|+
T Consensus 5 ~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~~--~~l~~~~~~~~~~~~l~~-------~~~~~~~h~af~v~ 71 (121)
T cd09013 5 AHLAHVELLTPKPEESLWFFTDVLGLEETGREG----QS--VYLRAWGDYEHHSLKLTE-------SPEAGLGHIAWRAS 71 (121)
T ss_pred cEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----Ce--EEEEeccCCCccEEEEee-------CCCCceEEEEEEcC
Confidence 468999999999999999999999999875432 11 233322211234444432 12357899999997
Q ss_pred ---CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 309 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 309 ---Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
|+++++++++++|+++...+..... ++.+||+|||||.||++-..
T Consensus 72 ~~~~v~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 72 SPEALERRVAALEASGLGIGWIEGDPGH--GKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred CHHHHHHHHHHHHHcCCccccccCCCCC--cceEEEECCCCCEEEEEEec
Confidence 6889999999999987543332222 46889999999999998654
No 117
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.56 E-value=1e-13 Score=117.40 Aligned_cols=120 Identities=20% Similarity=0.167 Sum_probs=84.0
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 308 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~ 308 (362)
.+|+|+.|.|+|++++++||+++|||++......+.+.....++.... ....+.+.... .....+..|++|.|+
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~~~----~~~~~~~~hiaf~v~ 78 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSN--KVHDVAYTRDP----AGARGRLHHLAYALD 78 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCC--CceeEEEecCC----CCCCCCceEEEEECC
Confidence 358999999999999999999999999875543332222223333221 12333332211 112246899999998
Q ss_pred C---HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 309 D---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 309 D---id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
| +++++++|+++|+++..+|..+......++|++|||||.|||+..
T Consensus 79 ~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 5 557889999999999877766544334578999999999999987
No 118
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.56 E-value=1.3e-13 Score=109.88 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=79.3
Q ss_pred eeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcc----cccCCCceeEEEEEeC
Q 018011 233 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT----DYDKGNAYAQIAIGTD 308 (362)
Q Consensus 233 ~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~----~~~~g~g~~hiaf~v~ 308 (362)
+..|.|.|++++++||+++|||++.... ..+.. +..+. ....+.+....... .........|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~~~--~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWYVS--LRSPD--GGVELAFMLPGHETVPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcEEE--EecCC--CceEEEEccCCCCCCcchhcccCCceEEEEEEEC
Confidence 4678999999999999999999987542 11322 22211 12444443211110 1111223459999999
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 309 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 309 Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
|+++++++++++|+++..+|...+++ .+.++++|||||.|||+|
T Consensus 76 did~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERLKAEGLPIVLPLRDEPWG-QRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHHHhcCCCeeeccccCCCc-ceEEEEECCCCCEEEEEC
Confidence 99999999999999998888776664 489999999999999986
No 119
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.55 E-value=6.7e-14 Score=112.67 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=81.1
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 308 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~ 308 (362)
..|.||+|.|+|++++.+||+++|||++..+. +. ..++..+. .+..+.+... .++..|++|+|+
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~--~~----~~~l~~~~--~~~~i~l~~~--------~~~~~~iaf~v~ 68 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERT--AK----ATYFRSDA--RDHTLVYIEG--------DPAEQASGFELR 68 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCC--CC----eEEEEcCC--ccEEEEEEeC--------CCceEEEEEEEC
Confidence 35899999999999999999999999986432 11 22344322 2344444321 145679999997
Q ss_pred C---HHHHHHHHHHcCCeeecCCcccC--CCCceEEEEECCCCCeEEEEcccc
Q 018011 309 D---VYKTAEAIKLFGGKVTREPGPLP--GINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 309 D---id~~~~~l~~~G~~v~~~p~~~~--~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
| +++++++|+++|+++..++.... .+.++++||+|||||.||++.+..
T Consensus 69 ~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 69 DDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred CHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEeee
Confidence 5 99999999999999887654221 222467899999999999987654
No 120
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.55 E-value=1.3e-13 Score=112.04 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=81.0
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCC--CceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEE
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE--YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIG 306 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~ 306 (362)
..++|+.|.|+|++++++||+++||+++..+..... .....++. .+ ...+++.... . ....+..|++|.
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~~----~~~i~l~~~~---~-~~~~~~~Hiaf~ 73 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-IG----GLWIAIMEGD---S-LQERTYNHIAFK 73 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-cC----CeEEEEecCC---C-CCCCCceEEEEE
Confidence 358999999999999999999999998754432111 00111111 11 2445554211 1 123468999999
Q ss_pred eC--CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 307 TD--DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 307 v~--Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
|+ |+++++++|+++|+++..+. +...+.++.+||+|||||.|||....
T Consensus 74 v~~~~ld~~~~~l~~~gv~~~~~~-~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 74 ISDSDVDEYTERIKALGVEMKPPR-PRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred cCHHHHHHHHHHHHHCCCEEecCC-ccccCCceEEEEECCCCCEEEEecCC
Confidence 98 79999999999999876433 22333368999999999999998654
No 121
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.55 E-value=1.6e-13 Score=107.83 Aligned_cols=109 Identities=26% Similarity=0.327 Sum_probs=80.2
Q ss_pred eeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHHHHH
Q 018011 235 MLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTA 314 (362)
Q Consensus 235 ~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did~~~ 314 (362)
.|.|+|++++++||+++|||++..... ...+. ++..+ +..+.+....+... ....+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~~--~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPGYA--FLSRG----GAQLMLSEHDGDEP-VPLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCcEE--EEEeC----CEEEEEeccCCCCC-CCCCCcEEEEEEeCCHHHHH
Confidence 588999999999999999999876543 22233 33321 45555654332211 13456779999999999999
Q ss_pred HHHHHcCCe-eecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 315 EAIKLFGGK-VTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 315 ~~l~~~G~~-v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
++++++|++ +..++...+++ .+.++++||+|+.|||+|
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~g-~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPWG-MREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCcc-cEEEEEECCCCCEEEecC
Confidence 999999999 66666555553 478999999999999986
No 122
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.54 E-value=1.9e-13 Score=107.75 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=78.9
Q ss_pred eeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHHHH
Q 018011 234 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKT 313 (362)
Q Consensus 234 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did~~ 313 (362)
..|.|.|++++++||+++|||+.... .+ +. .++.... ..+..+.+..... .+....|++|.|+|++++
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~-~~-~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~~v~d~~~~ 71 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD----HG-WI-ATFASPQ-NMTVQVSLATEGG-----TATVVPDLSIEVDDVDAA 71 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc----CC-ce-EEEeecC-CCCcEEEEecCCC-----CCCCCCEEEEEeCCHHHH
Confidence 46889999999999999999998532 11 22 2222211 1234444443211 123467999999999999
Q ss_pred HHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 314 AEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 314 ~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
+++|+++|+++..+|...+++ .+.+++.||+||.|+++++
T Consensus 72 ~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 72 LARAVAAGFAIVYGPTDEPWG-VRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred HHHHHhcCCeEecCCccCCCc-eEEEEEECCCCCEEEEEEc
Confidence 999999999999888766653 3789999999999999975
No 123
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.54 E-value=1.8e-13 Score=109.50 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=80.8
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC-
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 308 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~- 308 (362)
+++||+|.|+|+++|++||+++|||++.... ..... ++..+. .+..+.+... ...+..|++|.++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~---~~~~~--~~~~~~--~~~~~~l~~~-------~~~~~~~~~f~v~~ 67 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRP---EDGAL--YLRMDD--RAWRIAVHPG-------EADDLAYAGWEVAD 67 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCC---CCCeE--EEEccC--CceEEEEEeC-------CCCceeEEEEEECC
Confidence 5899999999999999999999999986432 11122 233221 2445555321 1246789999996
Q ss_pred --CHHHHHHHHHHcCCeeecCCccc--CCCCceEEEEECCCCCeEEEEccc
Q 018011 309 --DVYKTAEAIKLFGGKVTREPGPL--PGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 309 --Did~~~~~l~~~G~~v~~~p~~~--~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
|+++++++|+++|+++...|.+. ..+.++.+||+|||||.||++...
T Consensus 68 ~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 68 EAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred HHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 58999999999999998765322 222347899999999999998643
No 124
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.53 E-value=2.2e-13 Score=108.92 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=76.5
Q ss_pred eeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHHHH
Q 018011 234 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKT 313 (362)
Q Consensus 234 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did~~ 313 (362)
..|.|.|++++++||++ |||++....+. .+. .+..+ +..+.+...... .......|++|.|+|++++
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~~--~~~~~----~~~l~l~~~~~~---~~~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAA---GYM--ILRRG----DLELHFFAHPDL---DPATSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCC---CEE--EEEcC----CEEEEEEecCcC---CCCCCcceEEEEeCCHHHH
Confidence 56889999999999999 99998654321 233 33322 346666543211 1223456899999999999
Q ss_pred HHHHHHcCCeee-------cCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 314 AEAIKLFGGKVT-------REPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 314 ~~~l~~~G~~v~-------~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
+++|+++|+++. .+|...+++ .+.++++|||||.|+|.|+
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQPWG-MREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCCCc-eeEEEEECCCCCEEEeecC
Confidence 999999999853 333333443 5899999999999999986
No 125
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=3.9e-14 Score=120.52 Aligned_cols=119 Identities=39% Similarity=0.741 Sum_probs=105.5
Q ss_pred CCCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCC-----------CceEEEEeccCCCCcceEEEEeecCCcccccC
Q 018011 228 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPE-----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDK 296 (362)
Q Consensus 228 ~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~ 296 (362)
..+.-|+.+.|.|.+++++||+++|||++.+..+.++ ++|+-.|+++++++.|+++||+++++...+.-
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~Yel 94 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYEL 94 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceec
Confidence 4578899999999999999999999999998877765 78999999999999999999999999999999
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 297 GNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 297 g~g~~hiaf~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
|+++.||.+.++|+-..++.+...|.+. ++.-++++.||||+.|+++++.
T Consensus 95 Gndfg~i~I~s~dv~~~ve~v~~p~~~~---------~g~~~~~v~dPdGykF~l~~~~ 144 (299)
T KOG2943|consen 95 GNDFGGITIASDDVFSKVEKVNAPGGKG---------SGCGIAFVKDPDGYKFYLIDRG 144 (299)
T ss_pred cCCcccEEEeHHHHHHHHHHhcCcCCcc---------cceEEEEEECCCCcEEEEeccC
Confidence 9999999999999999998888776631 1135789999999999999744
No 126
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.53 E-value=2.4e-13 Score=109.21 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=83.8
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcc-cccCCCceeEEEEEeC
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-DYDKGNAYAQIAIGTD 308 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~-~~~~g~g~~hiaf~v~ 308 (362)
+|+|+.|.|.|++++.+||+++|||++.... + . .+.+..+. ....+.+....... ......+..|++|.|.
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~l~~~~--~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~ 73 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT---D-S--TAVLGTGG--KRPLLVLEEDPDAPPAPPGATGLYHFAILLP 73 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C-C--EEEEecCC--CeEEEEEEeCCCCCcccCCCCcEEEEEEECC
Confidence 4789999999999999999999999997552 1 1 23343322 24556665543221 1223457899999997
Q ss_pred ---CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 309 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 309 ---Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
|+++++++|+++|+++.. +...+. ++.+|++|||||+|||.....
T Consensus 74 ~~~~v~~~~~~l~~~g~~~~~-~~~~~~--~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 74 SRADLAAALRRLIELGIPLVG-ASDHLV--SEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred CHHHHHHHHHHHHHcCCceec-cccccc--eeEEEEECCCCCEEEEEEecC
Confidence 589999999999998754 333333 478999999999999987553
No 127
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.53 E-value=3.8e-13 Score=109.55 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=83.9
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCC
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD 309 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~D 309 (362)
+|+|+.|.|.|++++++||+++|||++....+. ..+ .++..+ ...+..+.+.............+..|++|.|+|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~~--~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~ 75 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GGL--VFLSRD-PDEHHQIALITGRPAAPPPGPAGLNHIAFEVDS 75 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--CcE--EEEEec-CCCceEEEEEecCCCCCCCCCCCceEEEEEeCC
Confidence 478999999999999999999999998654321 122 233322 112345555543222111234578899999987
Q ss_pred HH---HHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccccc
Q 018011 310 VY---KTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 357 (362)
Q Consensus 310 id---~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 357 (362)
++ +++++|.++|+++..++. .++ ++.+|++||+||.|||+.....
T Consensus 76 ~~~v~~~~~~l~~~G~~~~~~~~-~~~--~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 76 LDDLRDLYERLRAAGITPVWPVD-HGN--AWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred HHHHHHHHHHHHHCCCCccccCC-CCc--eeEEEEECCCCCEEEEEEcCCC
Confidence 65 588999999999886542 222 4789999999999999976543
No 128
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.53 E-value=3e-13 Score=104.97 Aligned_cols=112 Identities=34% Similarity=0.442 Sum_probs=83.2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCHHH
Q 018011 103 HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAK 182 (362)
Q Consensus 103 hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dld~ 182 (362)
||+|.|+|++++++||+++|||+....... ......++..+ . ..+++...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~--~--~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG--G--TRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC--C--ceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 889999999999999999999998877642 12234455544 2 24455543222211345678999999999999
Q ss_pred HHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEE
Q 018011 183 TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 221 (362)
Q Consensus 183 ~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el 221 (362)
+.++|+++|+.+..++.. ..+....+|+.||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 999999999998876642 23457889999999999986
No 129
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=1.9e-13 Score=109.84 Aligned_cols=112 Identities=22% Similarity=0.211 Sum_probs=77.7
Q ss_pred ceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcc-----cc--cCCCceeEEE
Q 018011 232 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-----DY--DKGNAYAQIA 304 (362)
Q Consensus 232 ~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~-----~~--~~g~g~~hia 304 (362)
.++.|.|.|++++++||++ |||++......++ ...+..+ + ...+.+....... +. ..+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~--~~~~~~~--~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEK--AACMVIS--D---NIFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCC--eEEEEEC--C---ceEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 5789999999999999976 8999764332222 2222221 1 2344443321100 00 1234567999
Q ss_pred EEeC---CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 305 IGTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 305 f~v~---Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
|.|+ |+++++++++++|+++..+|...++ ++.+||+|||||.||++.
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 9997 6889999999999999988876665 467899999999999973
No 130
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.52 E-value=1.1e-13 Score=108.05 Aligned_cols=108 Identities=24% Similarity=0.343 Sum_probs=77.0
Q ss_pred eeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHHHHHH
Q 018011 236 LRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAE 315 (362)
Q Consensus 236 l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did~~~~ 315 (362)
|.|+|++++++||+++|||++....+ .+..+..+..- ......+..... ......+..|++|.|+|++++++
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~v~dv~~~~~ 72 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFRF--HDGVIEFLQFPD--PPGPPGGGFHLCFEVEDVDALYE 72 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEEE--EEEEEEEEEEES--SSSSSSSEEEEEEEESHHHHHHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccch--hhhhHHHccCCc--cccCCCceeEEEEEEcCHHHHHH
Confidence 67999999999999999999987332 23333332100 011222222111 22345688999999999999999
Q ss_pred HHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 018011 316 AIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 352 (362)
Q Consensus 316 ~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~ 352 (362)
+++++|++++.+|...+++ .+.+++.|||||.|||+
T Consensus 73 ~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 73 RLKELGAEIVTEPRDDPWG-QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHTTSEEEEEEEEETTS-EEEEEEE-TTS-EEEEE
T ss_pred HHHHCCCeEeeCCEEcCCC-eEEEEEECCCCCEEEeC
Confidence 9999999999988877664 48999999999999985
No 131
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.52 E-value=3.3e-13 Score=106.66 Aligned_cols=108 Identities=26% Similarity=0.309 Sum_probs=79.1
Q ss_pred eeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCccc-ccCCCceeEEEEEeCC---
Q 018011 234 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD-YDKGNAYAQIAIGTDD--- 309 (362)
Q Consensus 234 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~-~~~g~g~~hiaf~v~D--- 309 (362)
+.|.|.|++++++||+++||+++.... ..+..+... + +..+.+........ .....+.+|++|.++|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~----~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS----PTFALFVLG--S---GVKLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC----CceEEEEeC--C---CcEEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 678999999999999999999976432 124333222 1 24455544332211 1223467899999975
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 018011 310 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 352 (362)
Q Consensus 310 id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~ 352 (362)
+++++++++++|+++..+|...++ ++.++|+|||||.||+.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~--g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDF--GYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCC--ccEEEEECCCCCEEEee
Confidence 889999999999999998877666 46889999999999986
No 132
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.51 E-value=3.6e-13 Score=107.50 Aligned_cols=114 Identities=20% Similarity=0.269 Sum_probs=79.3
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcc------cccCCCceeEEE
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT------DYDKGNAYAQIA 304 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~------~~~~g~g~~hia 304 (362)
|.++.|.|.|++++++||+++|||++... +++.+. ++..+. ...+.+....... ......+..|++
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~~--~l~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRLA--FFWVGG---RGMLLLFDPGATSTPGGEIPPHGGSGPGHFA 72 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCceE--EEEcCC---CcEEEEEecCCcccccCCCCCCCCCCccEEE
Confidence 46899999999999999999999998753 222233 333322 1333333221110 111234778999
Q ss_pred EEe--CCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 305 IGT--DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 305 f~v--~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
|.+ +|++++++++.++|+++...+. ... .++.+|++|||||.||++++
T Consensus 73 ~~v~~~dl~~~~~~l~~~g~~~~~~~~-~~~-~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 73 FAIPAEELAEWEAHLEAKGVAIESEVQ-WPR-GGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred EEcCHHHHHHHHHHHHhcCCceecccc-CCC-CeeEEEEECCCCCEEEEecC
Confidence 998 5899999999999999876554 222 25889999999999999864
No 133
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=4.6e-14 Score=112.88 Aligned_cols=122 Identities=30% Similarity=0.404 Sum_probs=80.7
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCC---------------CcceEEEEeecCCcccc-
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPE---------------DKNVVLELTYNYGVTDY- 294 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~l~l~~~~~~~~~- 294 (362)
+.|.++.+.|+.++..||++++|+.+......++..+.+.++++... .....++|.+++|....
T Consensus 23 ~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gtes~~ 102 (170)
T KOG2944|consen 23 LQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTESPP 102 (170)
T ss_pred hhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCCCCc
Confidence 46666666666666666666666665433222222222222222100 12577888888775532
Q ss_pred ----cC----CCceeEEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCC-ceEEEEECCCCCeEEEEccc
Q 018011 295 ----DK----GNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGIN-TKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 295 ----~~----g~g~~hiaf~v~Did~~~~~l~~~G~~v~~~p~~~~~~~-~~~~~~~DPdG~~iel~~~~ 355 (362)
.+ +.|.+||||.|+|+++++++|+++|+++...|.+ |. -.++++.||||++|||....
T Consensus 103 ~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~d---Gk~K~iaF~~dpDgywiei~~~s 169 (170)
T KOG2944|consen 103 DQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKD---GKMKPIAFLHDPDGYWIEIELES 169 (170)
T ss_pred chhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCC---ccccceeEEECCCCCeEEEeecC
Confidence 22 2389999999999999999999999998866532 22 26899999999999998653
No 134
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.50 E-value=5.2e-13 Score=105.53 Aligned_cols=108 Identities=27% Similarity=0.364 Sum_probs=77.2
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCC-CCcCCCCeEEEEEEeCC---
Q 018011 104 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD-KYDIGTGFGHFGIAVDD--- 179 (362)
Q Consensus 104 V~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~-~~~~g~~~~hiaf~V~D--- 179 (362)
|.|.|+|++++++||+++|||++..... .+ ..+..++ .. .+.+....... ......+..|++|.|+|
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~--~~~~~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TF--ALFVLGS-GV--KLGLWSRHTVEPASDATGGGSELAFMVDDGAA 72 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ce--EEEEeCC-Cc--EEEEeeccccCCCCCCCCCceEEEEEcCCHHH
Confidence 6799999999999999999999775422 22 2233322 12 33343322211 11123467899999986
Q ss_pred HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEE
Q 018011 180 VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (362)
Q Consensus 180 ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~ 222 (362)
+++++++++++|+++..+|...+.| +.++|+|||||+|||.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~~~~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPTEMDFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHCCCeEecCccccCCc--cEEEEECCCCCEEEee
Confidence 8899999999999998887766544 5689999999999986
No 135
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.50 E-value=3.6e-13 Score=107.32 Aligned_cols=112 Identities=25% Similarity=0.339 Sum_probs=81.0
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEe--
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT-- 307 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v-- 307 (362)
+|+|+.|.|.|++++++||+++|||+...... ++.+ +..+. .....+.+.. ...++..|++|.+
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~--~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~v~~ 68 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVY--LRATG-SEHHILRLRR-------SDRNRLDVVSFSVAS 68 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEE--EECCC-CccEEEEecc-------CCCCCCceEEEEeCC
Confidence 58999999999999999999999999864321 2333 22211 1223333321 1224678999999
Q ss_pred -CCHHHHHHHHHHcCCeeecCCcccC-CCCceEEEEECCCCCeEEEEccc
Q 018011 308 -DDVYKTAEAIKLFGGKVTREPGPLP-GINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 308 -~Did~~~~~l~~~G~~v~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
+|+++++++|+++|+++..+|.... .+.++.++|+||+||.|||+...
T Consensus 69 ~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~~ 118 (120)
T cd08362 69 RADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSADV 118 (120)
T ss_pred HHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEecc
Confidence 5789999999999999988764332 22357899999999999998754
No 136
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.50 E-value=5.4e-13 Score=103.56 Aligned_cols=112 Identities=29% Similarity=0.397 Sum_probs=83.9
Q ss_pred eeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHHH
Q 018011 233 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYK 312 (362)
Q Consensus 233 ~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did~ 312 (362)
|+.+.|.|++++.+||+++||++........ .....++..+ +..+++...........+.+..|++|.|+|+++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~--~~~~~~~~~~----~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~ 74 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNG--GAEFAVLGLG----GTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDA 74 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccC--CEEEEEEecC----CceEEEecCCCCCCcccCCCeeEEEEECCCHHH
Confidence 7899999999999999999999987665321 1344444432 466666654332111245678999999999999
Q ss_pred HHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 018011 313 TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 351 (362)
Q Consensus 313 ~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel 351 (362)
+.++|+++|+.+..++.. .....+.++++||+|+.|||
T Consensus 75 ~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 75 AYERLKAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 999999999998887652 22235899999999999986
No 137
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.50 E-value=4.5e-13 Score=105.58 Aligned_cols=108 Identities=22% Similarity=0.343 Sum_probs=75.7
Q ss_pred eeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEe--CCH
Q 018011 233 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT--DDV 310 (362)
Q Consensus 233 ~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v--~Di 310 (362)
|+.|.|+|++++++||+++||+++....+ . ...+.+. ...+.+...... ...+.+..|++|.| +|+
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~--~~~~~~~------~~~l~~~~~~~~--~~~~~~~~hiaf~v~~~d~ 68 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K--EAYFELA------GLWICLMEEDSL--QGPERTYTHIAFQIQSEEF 68 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c--eeEEEec------CeEEEeccCCCc--CCCCCCccEEEEEcCHHHH
Confidence 78999999999999999999999864431 1 1111121 234444332211 11234678999999 479
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 311 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 311 d~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
++++++++++|+++...+..... .++.+|++|||||.|||..
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 69 DEYTERLKALGVEMKPERPRVQG-EGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred HHHHHHHHHcCCccCCCccccCC-CceEEEEECCCCCEEEEEe
Confidence 99999999999998754322222 2588999999999999985
No 138
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.50 E-value=5.4e-13 Score=105.66 Aligned_cols=111 Identities=21% Similarity=0.325 Sum_probs=82.8
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC-
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD- 308 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~- 308 (362)
+++|+.|.|.|++++.+||+++|||++....+ ... ++..+. ..+..+.+... ...+..|++|.|.
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~~--~~~~~~-~~~~~~~~~~~-------~~~~~~h~~~~v~~ 67 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GSV--YLRCSE-DDHHSLVLTEG-------DEPGVDALGFEVAS 67 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC----CeE--EEecCC-CCcEEEEEEeC-------CCCCceeEEEEcCC
Confidence 58999999999999999999999999875432 122 233221 12344444321 1256889999997
Q ss_pred --CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 309 --DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 309 --Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
|++++.++++++|+++...|...+++ ++.+|++||+||.||+....
T Consensus 68 ~~~v~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~DP~G~~ie~~~~~ 115 (117)
T cd07240 68 EEDLEALAAHLEAAGVAPEEASDPEPGV-GRGLRFQDPDGHLLELFVEA 115 (117)
T ss_pred HHHHHHHHHHHHHcCCceEEcCccCCCC-ceEEEEECCCCCEEEEEEcc
Confidence 68999999999999998887644543 57899999999999998653
No 139
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.50 E-value=8.9e-13 Score=103.50 Aligned_cols=109 Identities=28% Similarity=0.343 Sum_probs=77.8
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCHHHHH
Q 018011 105 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 184 (362)
Q Consensus 105 ~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dld~~~ 184 (362)
+|.|+|++++++||+++|||++..... .. ...++..++ ..+.+......... ...+..|++|.++|++++.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~--~~~~~~~~~----~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 73 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EP--GYAFLSRGG----AQLMLSEHDGDEPV-PLGRGGSVYIEVEDVDALY 73 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CC--cEEEEEeCC----EEEEEeccCCCCCC-CCCCcEEEEEEeCCHHHHH
Confidence 489999999999999999999877653 11 224444322 23444432221111 2346668999999999999
Q ss_pred HHHHHcCCe-eecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 185 ELIKAKGGK-VTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 185 ~~l~~~G~~-~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
++++++|++ +..++...+. +.+.++++||+|+.|||++
T Consensus 74 ~~l~~~G~~~~~~~~~~~~~-g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 74 AELKAKGADLIVYPPEDQPW-GMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHcCCcceecCccCCCc-ccEEEEEECCCCCEEEecC
Confidence 999999998 5555554443 4578899999999999975
No 140
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.49 E-value=8.5e-13 Score=104.29 Aligned_cols=117 Identities=28% Similarity=0.346 Sum_probs=84.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecC-CCceEEEEEeecCCCCCCcCCCCeEEEEEEe
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGP-EDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~-~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V 177 (362)
..+.|..|.|.|++++++||+++|||+..+..+..+..+ ..+..+. ..... +...+ ...++.+-..+.|.|
T Consensus 8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y--~~f~~~~~~~gG~-l~~~~-----~~~p~~~~~~iy~~v 79 (127)
T COG3324 8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRY--AVFPADGAGAGGG-LMARP-----GSPPGGGGWVIYFAV 79 (127)
T ss_pred CccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceE--EEEECCCccccce-eccCC-----cCCCCCCCEEEEEec
Confidence 345566699999999999999999999988755433333 3332222 11111 11111 111223556789999
Q ss_pred CCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 178 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 178 ~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+|+++..+|+.++|.+++.++.+.++ .++.+.+.||+||.|.|++.
T Consensus 80 ~did~~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 80 DDIDATLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSP 125 (127)
T ss_pred CChHHHHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeec
Confidence 99999999999999999999998886 56778999999999999875
No 141
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.49 E-value=7.3e-13 Score=106.13 Aligned_cols=114 Identities=23% Similarity=0.255 Sum_probs=79.5
Q ss_pred cceeeeeeCChHHHHHHHHHh---hCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEe
Q 018011 231 LCQVMLRVGDLDRSINFYEQA---FGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT 307 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~---LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v 307 (362)
+.|++|.|.|++++++||+++ ||+++.... .+ .+ + .+.... ....+.+....+..+ ....+..|++|.|
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~~-~-~~~~~~--~~~~~~l~~~~~~~~-~~~~~~~hi~f~v 72 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-GA-V-GYGKGG--GGPDFWVTKPFDGEP-ATAGNGTHVAFAA 72 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-ce-e-EeccCC--CCceEEEeccccCCC-CCCCCceEEEEEC
Confidence 579999999999999999998 688875432 11 12 2 222211 234555544322111 1223457999999
Q ss_pred CC---HHHHHHHHHHcCCeeecCCcccCC--CCceEEEEECCCCCeEEEE
Q 018011 308 DD---VYKTAEAIKLFGGKVTREPGPLPG--INTKITACLDPDGWKTVFV 352 (362)
Q Consensus 308 ~D---id~~~~~l~~~G~~v~~~p~~~~~--~~~~~~~~~DPdG~~iel~ 352 (362)
+| ++++.+++.++|+.+..+|...++ ...+.+|++|||||.|||+
T Consensus 73 ~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 73 PSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 86 788999999999999888866553 2235789999999999996
No 142
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.49 E-value=5.9e-13 Score=106.57 Aligned_cols=109 Identities=25% Similarity=0.349 Sum_probs=78.6
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEe--
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGT-- 307 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v-- 307 (362)
+|.|+.|.|+|++++.+||+++|||++....+ +. . ++..+ +..+.+..... ....++..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~~--~--~~~~~----~~~~~l~~~~~---~~~~~~~~hi~f~v~~ 67 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--KG--A--YLEAG----DLWLCLSVDAN---VGPAKDYTHYAFSVSE 67 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--Cc--e--EEecC----CEEEEEecCCC---CCCCCCeeeEEEEeCH
Confidence 47899999999999999999999999864322 11 1 22221 23333322211 12345688999998
Q ss_pred CCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 308 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 308 ~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
+|+++++++++++|+++..++.. . ++.+||+|||||.|||....
T Consensus 68 ~dl~~~~~~l~~~G~~~~~~~~~--~--~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 68 EDFASLKEKLRQAGVKEWKENTS--E--GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred HHHHHHHHHHHHcCCcccCCCCC--C--ccEEEEECCCCCEEEEEeCC
Confidence 58999999999999998765432 2 36899999999999998754
No 143
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.49 E-value=3.7e-13 Score=107.72 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=76.0
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCC-----cccccCCCceeEEEE
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG-----VTDYDKGNAYAQIAI 305 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~-----~~~~~~g~g~~hiaf 305 (362)
++||+|.|.|+++|++||++ |||++....... .+.. +..+. +..+.+..... ......+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~--~~~~--~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDE--PHVE--AVLPG---GVRLAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCC--CcEE--EEeCC---CEEEEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 57999999999999999965 999875432211 1221 11111 12232221100 001122345678888
Q ss_pred EeC---CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 018011 306 GTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 352 (362)
Q Consensus 306 ~v~---Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~ 352 (362)
.+. |+++++++|+++|+++..+|...+++ .+.++++|||||.|||+
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 764 89999999999999999888777764 47899999999999986
No 144
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.49 E-value=6.6e-13 Score=106.24 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=75.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecC-----CCCCCcCCCCeEEEEE
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY-----GVDKYDIGTGFGHFGI 175 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~-----~~~~~~~g~~~~hiaf 175 (362)
|+||.|.|+|++++++||+. |||++...... ...+.+..++ +.. +.+.... .......+.+..|++|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~----~~~~~~~~~~-~~~--l~l~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD----EPHVEAVLPG-GVR--LAWDTVESIRSFTPGWTPTGGHRIALAF 72 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC----CCcEEEEeCC-CEE--EEEEcccceeeecCCCCCCCCCcEEEEE
Confidence 58999999999999999975 99997543321 1122233332 112 2221110 0000112235568888
Q ss_pred EeC---CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEE
Q 018011 176 AVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (362)
Q Consensus 176 ~V~---Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~ 222 (362)
.+. |+++++++|+++|+++..+|...+.| .+.++|+|||||.|||.
T Consensus 73 ~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 73 LCETPAEVDALYAELVGAGYPGHKEPWDAPWG-QRYAIVKDPDGNLVDLF 121 (122)
T ss_pred EcCCHHHHHHHHHHHHHCCCCcCCCCccCCCC-CEEEEEECCCCCEEEEe
Confidence 875 79999999999999988877766644 46789999999999986
No 145
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.48 E-value=4.2e-13 Score=105.49 Aligned_cols=95 Identities=29% Similarity=0.352 Sum_probs=76.3
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCC--cCCCCeEEEEEEeCC
Q 018011 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY--DIGTGFGHFGIAVDD 179 (362)
Q Consensus 102 ~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~--~~g~~~~hiaf~V~D 179 (362)
+||.|.|+|++++++||+++||++.......+..+....++..++.. ..++|..+.....+ ..+.|++||||.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~--~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGP--VQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTET--EEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCc--EEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 69999999999999999999999988776666667777787776543 56777765443321 267899999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 018011 180 VAKTVELIKAKGGKVTREP 198 (362)
Q Consensus 180 ld~~~~~l~~~G~~~~~~p 198 (362)
++++.++|+++|+++...+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999987654
No 146
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.48 E-value=1.2e-12 Score=104.49 Aligned_cols=112 Identities=22% Similarity=0.291 Sum_probs=78.8
Q ss_pred ceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCC--
Q 018011 232 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 309 (362)
Q Consensus 232 ~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~D-- 309 (362)
.|+.|.|+|++++.+||+++||++..... ++ +..+... . ....+.+..... ...++..|++|.|+|
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~--~~--~~~~~~~--~--~~~~~~~~~~~~----~~~~~~~h~~f~v~~~~ 70 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR--DD--YAKFLLE--D--PRLNFVLNERPG----APGGGLNHLGVQVDSAE 70 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc--CC--eeEEEec--C--CceEEEEecCCC----CCCCCeeEEEEEeCCHH
Confidence 48999999999999999999999876442 11 2222222 1 123333332211 111578899999987
Q ss_pred -HHHHHHHHHHcCCeeecCCcccC-CCCceEEEEECCCCCeEEEEccc
Q 018011 310 -VYKTAEAIKLFGGKVTREPGPLP-GINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 310 -id~~~~~l~~~G~~v~~~p~~~~-~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
++++++++.++|+++..+|.... ++.++.+|++||+||.|||+...
T Consensus 71 dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 78899999999999887764432 22247899999999999999754
No 147
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.47 E-value=1.1e-12 Score=103.75 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=77.3
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCC
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD 309 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~D 309 (362)
++.|+.|.|+|++++++||++ |||++....+ + . . ++..+. .....+.+.. ...++..|++|.|+|
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~--~-~-~~~~~~-~~~~~~~~~~-------~~~~~~~~~af~v~~ 67 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D--E-L-YYRGYG-TDPFVYVARK-------GEKARFVGAAFEAAS 67 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C--e-E-EEecCC-CccEEEEccc-------CCcCcccEEEEEECC
Confidence 588999999999999999999 9998865421 1 1 2 233211 1122222111 123568899999999
Q ss_pred HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 310 VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 310 id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
.+++.+.++++|+++...+. .+++ ++.++|+|||||.|||+-.
T Consensus 68 ~~~~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 68 RADLEKAAALPGASVIDDLE-APGG-GKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred HHHHHHHHHcCCCeeecCCC-CCCC-ceEEEEECCCCCEEEEEec
Confidence 99999999999998876543 3443 5789999999999999754
No 148
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.46 E-value=1.1e-12 Score=105.31 Aligned_cols=112 Identities=24% Similarity=0.231 Sum_probs=76.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCC-----CCCC--cCCCCeEEEE
Q 018011 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYG-----VDKY--DIGTGFGHFG 174 (362)
Q Consensus 102 ~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~-----~~~~--~~g~~~~hia 174 (362)
.+|.|.|+|++++++||++ |||++......+ . ..++..++ . ..+.+..... .... ..+.+..|++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~--~--~~~~~~~~-~--~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 73 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE--K--AACMVISD-N--IFVMLLTEDFFQTFTPKPIADTKKSTEVLIS 73 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCC--C--eEEEEECC-c--eEEEEEcHHHHhhccCCCcccCCCCCeEEEE
Confidence 5788999999999999987 999976433211 1 12333332 1 2333332110 0000 1233566999
Q ss_pred EEeC---CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 175 IAVD---DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 175 f~V~---Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
|.|+ |+++++++++++|+++..+|...+. .+.+||+|||||+|||+.
T Consensus 74 f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~--~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 74 LSADSREEVDELVEKALAAGGKEFREPQDHGF--MYGRSFADLDGHLWEVLW 123 (124)
T ss_pred EeCCCHHHHHHHHHHHHHCCCcccCCcccCCc--eEEEEEECCCCCEEEEEE
Confidence 9998 5889999999999999877766553 456899999999999974
No 149
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.45 E-value=1e-12 Score=105.32 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=73.3
Q ss_pred eeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecC-Ccc---c-ccCCCceeEEE--E
Q 018011 233 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNY-GVT---D-YDKGNAYAQIA--I 305 (362)
Q Consensus 233 ~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~-~~~---~-~~~g~g~~hia--f 305 (362)
||.|.|+|++++++||+++||+++....+ .+. .+.... ....+.+.... ... . .....+..|++ |
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~--~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 73 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TWV--DFDFFG--HQLVAHLSPNFNADASDNAVDGHPVPVPHFGLIL 73 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Ccc--cccccC--cEEEEEeccCCCcccccCCCCCCccCCceEEEEE
Confidence 89999999999999999999999854321 121 122111 12222222111 000 0 01112445664 5
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCcccC---CCCceEEEEECCCCCeEEEEc
Q 018011 306 GTDDVYKTAEAIKLFGGKVTREPGPLP---GINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 306 ~v~Did~~~~~l~~~G~~v~~~p~~~~---~~~~~~~~~~DPdG~~iel~~ 353 (362)
.++|+++++++|+++|+++..+|.... .+.++.+|++|||||.|||..
T Consensus 74 ~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 74 SEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred eHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 668999999999999999998775431 122488999999999999974
No 150
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.45 E-value=2.7e-12 Score=102.50 Aligned_cols=107 Identities=21% Similarity=0.179 Sum_probs=73.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCHHHH
Q 018011 104 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKT 183 (362)
Q Consensus 104 V~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dld~~ 183 (362)
..|.|+|++++++||++ |||++..+.+. . .+++..++ ..+.+....... ......|++|.|+|++++
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~--~~~~~~~~----~~l~l~~~~~~~---~~~~~~~~~~~v~dvd~~ 72 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAA---G--YMILRRGD----LELHFFAHPDLD---PATSPFGCCLRLPDVAAL 72 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCC---C--EEEEEcCC----EEEEEEecCcCC---CCCCcceEEEEeCCHHHH
Confidence 45999999999999999 99998765431 2 23344332 234444322111 122345799999999999
Q ss_pred HHHHHHcCCeee-------cCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 184 VELIKAKGGKVT-------REPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 184 ~~~l~~~G~~~~-------~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+++|+++|+++. .++...+ .+.+.++|+|||||+|||.+.
T Consensus 73 ~~~l~~~G~~~~~~~~~~~~~~~~~~-~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 73 HAEFRAAGLPETGSGIPRITPPEDQP-WGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHhCccccccCCCcccCCcCCC-CceeEEEEECCCCCEEEeecC
Confidence 999999999853 2223223 346789999999999999874
No 151
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.44 E-value=2.5e-12 Score=101.42 Aligned_cols=106 Identities=22% Similarity=0.207 Sum_probs=72.8
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeE--EEEEe
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQ--IAIGT 307 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~h--iaf~v 307 (362)
.|+||.|.|.|++++++||+ .|||++.... + ... +...+ ..+..+.+... ...+..| +++.+
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~--~~~-~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~ 65 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D--GLE-LRTAG--NDHRWARLLEG-------ARKRLAYLSFGIFE 65 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C--ceE-EEecC--CCceEEEeecC-------CCCceeeEEEEeEh
Confidence 58999999999999999997 6999986432 1 121 22211 12333433321 1223344 55556
Q ss_pred CCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 308 DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 308 ~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
+|+++++++|+++|+++..++ .+.. .+.+||+||+||.|||...
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~--~~~~-~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAP--PGAD-PDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred hhHHHHHHHHHHcCCceecCC--CcCC-CCEEEEECCCCCEEEEecC
Confidence 899999999999999988765 2222 3578999999999999854
No 152
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.43 E-value=3.4e-12 Score=100.97 Aligned_cols=104 Identities=21% Similarity=0.211 Sum_probs=72.5
Q ss_pred eeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHHHH
Q 018011 234 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKT 313 (362)
Q Consensus 234 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did~~ 313 (362)
..|.|.|++++++||++ |||++.... + .+. ++..+ +..+.+...... ...+..+++|.|+|++++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~--~--~~~--~l~~~----~~~l~l~~~~~~----~~~~~~~~~~~v~did~~ 69 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN--D--NLA--YFRLG----NCAFYLQDYYVK----DWAENSMLHLEVDDLEAY 69 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC--C--CEE--EEEcC----CEEEEeecCCCc----ccccCCEEEEEECCHHHH
Confidence 45789999999999987 999997653 1 233 33332 334444332111 122346889999999999
Q ss_pred HHHHHHcCCeeec-----CCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 314 AEAIKLFGGKVTR-----EPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 314 ~~~l~~~G~~v~~-----~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
+++|+++|+++.. +|...+++ .+.++|+|||||+|+|.+
T Consensus 70 ~~~l~~~G~~~~~~~~~~~~~~~~~g-~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 70 YEHIKALGLPKKFPGVKLPPITQPWW-GREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHcCCcccccceecCccccCCC-cEEEEEECCCccEEEeeC
Confidence 9999999997542 33333443 589999999999999875
No 153
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.42 E-value=3.4e-12 Score=100.99 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=71.4
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCHHHHH
Q 018011 105 VYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKTV 184 (362)
Q Consensus 105 ~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dld~~~ 184 (362)
.|.|+|++++++||++ |||++....+ ...++..++ .. +.+...... . ..+-.+++|.|+|+++++
T Consensus 6 ~l~v~Dl~~s~~FY~~-LGf~~~~~~~------~~~~l~~~~--~~--l~l~~~~~~-~---~~~~~~~~~~v~did~~~ 70 (113)
T cd08356 6 FIPAKDFAESKQFYQA-LGFELEWEND------NLAYFRLGN--CA--FYLQDYYVK-D---WAENSMLHLEVDDLEAYY 70 (113)
T ss_pred ccccccHHHHHHHHHH-hCCeeEecCC------CEEEEEcCC--EE--EEeecCCCc-c---cccCCEEEEEECCHHHHH
Confidence 4889999999999988 9999987642 235555543 22 223221111 1 112347899999999999
Q ss_pred HHHHHcCCeeec-----CCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 185 ELIKAKGGKVTR-----EPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 185 ~~l~~~G~~~~~-----~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
++|+++|+++.. ++...+. +.+.++|+|||||+++|.+
T Consensus 71 ~~l~~~G~~~~~~~~~~~~~~~~~-g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 71 EHIKALGLPKKFPGVKLPPITQPW-WGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHcCCcccccceecCccccCC-CcEEEEEECCCccEEEeeC
Confidence 999999987532 3333333 4688999999999999864
No 154
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.42 E-value=4.6e-12 Score=100.87 Aligned_cols=110 Identities=22% Similarity=0.200 Sum_probs=76.2
Q ss_pred eeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCC------cccccCCCceeEEEEEe
Q 018011 234 VMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYG------VTDYDKGNAYAQIAIGT 307 (362)
Q Consensus 234 v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~------~~~~~~g~g~~hiaf~v 307 (362)
|.|.|.|++++.+||+++|||++... .+..+.. +..+ +..+.+..... ......+.+..|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~---~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD---SNDGVAF--FQLG----GLVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc---CCCceEE--EEcC----CeEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 67999999999999999999998654 1122332 3321 34555543211 00111222344566554
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 308 ---DDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 308 ---~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
+|+++++++++++|+++..+|...+++ ++.++++||+||.|||..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEee
Confidence 689999999999999999887666654 588999999999999975
No 155
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.38 E-value=6.4e-12 Score=99.99 Aligned_cols=110 Identities=26% Similarity=0.360 Sum_probs=75.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecC------CCCCCcCCCCeEEEEEEe
Q 018011 104 VVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY------GVDKYDIGTGFGHFGIAV 177 (362)
Q Consensus 104 V~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~------~~~~~~~g~~~~hiaf~V 177 (362)
|.|.|.|++++.+||+++|||++..+. .+ ...++..++ ..+.+.... .......+.+-.|++|.+
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~--~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---ND--GVAFFQLGG----LVLALFPREELAKDAGVPVPPPGFSGITLAHNV 72 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CC--ceEEEEcCC----eEEEEecchhhhhhcCCCCCCCCccceEEEEEc
Confidence 679999999999999999999987651 11 233444432 234443211 111111122333466655
Q ss_pred ---CCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 178 ---DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 178 ---~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
+|++++++++++.|+++..++...+.| ++.+|++||+||+||+..
T Consensus 73 ~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 73 RSEEEVDAVLARAAAAGATIVKPPQDVFWG-GYSGYFADPDGHLWEVAH 120 (121)
T ss_pred CCHHHHHHHHHHHHhCCCEEecCCccCCCC-ceEEEEECCCCCEEEEee
Confidence 579999999999999998877665543 677899999999999975
No 156
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.35 E-value=4.9e-12 Score=99.38 Aligned_cols=95 Identities=23% Similarity=0.270 Sum_probs=74.7
Q ss_pred ceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCccc--ccCCCceeEEEEEeCC
Q 018011 232 CQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTD--YDKGNAYAQIAIGTDD 309 (362)
Q Consensus 232 ~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~--~~~g~g~~hiaf~v~D 309 (362)
+||.+.|+|++++++||+++||++.......+..+....++..+.. ...+||.+...... ...+.|++||+|.|+|
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~--~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D 78 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG--PVQIELIQPLDGDSPLDRGGGGIHHIAFEVDD 78 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE--TEEEEEEEESSTTCHHHHTSSEEEEEEEEESH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC--cEEEEEEEeCCCCcccccCCCCEEEEEEEeCC
Confidence 5999999999999999999999998766555555566666654431 26888887655432 2477899999999999
Q ss_pred HHHHHHHHHHcCCeeecCC
Q 018011 310 VYKTAEAIKLFGGKVTREP 328 (362)
Q Consensus 310 id~~~~~l~~~G~~v~~~p 328 (362)
++++.++|+++|++++..+
T Consensus 79 ~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 79 LDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp HHHHHHHHHHTTECEEECE
T ss_pred HHHHHHHHHHCCCEEcccC
Confidence 9999999999999988764
No 157
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=2.2e-11 Score=97.70 Aligned_cols=118 Identities=33% Similarity=0.472 Sum_probs=77.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCC-----CCc---C-CCC
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVD-----KYD---I-GTG 169 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~-----~~~---~-g~~ 169 (362)
.++.|+.|.+++..+...||...||++..+..+.+..... +|...... .++|.++-+.. .+. . +.|
T Consensus 41 tr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~-v~~~~~~~----~~ELthn~Gtes~~~~~~~ngN~~prG 115 (170)
T KOG2944|consen 41 TRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVS-VFVFSRNA----KLELTHNWGTESPPDQAYLNGNKEPRG 115 (170)
T ss_pred hhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCc-eEEecccC----ceeeecCCCCCCCcchhhcCCCCCCCc
Confidence 4566666667776677777777677665554443333322 33332222 46666643322 121 1 238
Q ss_pred eEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCE-EEEEEECCCCCEEEEEec
Q 018011 170 FGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNT-VIAFIEDPDGYKFELLER 224 (362)
Q Consensus 170 ~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~-~~~~~~DPdG~~~el~~~ 224 (362)
++||||.|+|++++.++|++.|+++...+ +.|.. ..+|+.||||++|||...
T Consensus 116 fgHIci~V~di~sac~~lkekGV~f~Kk~---~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 116 FGHICIEVDDINSACERLKEKGVRFKKKL---KDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred cceEEEEeCCHHHHHHHHHHhCceeeecC---CCccccceeEEECCCCCeEEEeec
Confidence 99999999999999999999999976443 33333 678999999999999854
No 158
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.31 E-value=4.1e-11 Score=103.75 Aligned_cols=99 Identities=27% Similarity=0.399 Sum_probs=73.0
Q ss_pred ceeeEEEEEeC--CHHHHHHHHHHhcCCEEEEEecCCC--CceeEEEEeecCCCceEEEEEeecCC--CCC-------Cc
Q 018011 99 RRMLHVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPE--EKYTNAFLGYGPEDSHFVIELTYNYG--VDK-------YD 165 (362)
Q Consensus 99 ~~l~hV~l~v~--d~~~a~~FY~~vLG~~~~~~~~~~~--~~~~~~~l~~g~~~~~~~l~l~~~~~--~~~-------~~ 165 (362)
.+|+||++.|+ |++++++||+++|||+.......+. .......+..+. ..+.+++..... ... ..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~--g~i~l~L~~~~~~~~~s~~~~fl~~~ 79 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD--GKIRIPLNEPASGKRKSQIQEFLEYY 79 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC--CcEEEEEecCCCCCCccHHHHHHHHh
Confidence 58999999999 9999999999999999887665433 223333444322 345566654332 111 12
Q ss_pred CCCCeEEEEEEeCCHHHHHHHHHHcCCeeecCCe
Q 018011 166 IGTGFGHFGIAVDDVAKTVELIKAKGGKVTREPG 199 (362)
Q Consensus 166 ~g~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~ 199 (362)
.|.|++||||.|+|+++++++|+++|+++...|.
T Consensus 80 ~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 80 GGAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred CCCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 4789999999999999999999999999986653
No 159
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.15 E-value=5.2e-10 Score=84.69 Aligned_cols=117 Identities=29% Similarity=0.363 Sum_probs=82.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCC----cCCCCeEEEE-
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY----DIGTGFGHFG- 174 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~----~~g~~~~hia- 174 (362)
.+=|+.|.|+|++++++||.++||.+.-...+ .|+..+--++.+...+.+....... .++.-+.|++
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd--------~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGv 75 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD--------TWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGV 75 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc--------eEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceE
Confidence 45699999999999999999999998765443 3444444455555555543322111 1233344554
Q ss_pred -EEeCCHHHHHHHHHHcCCeeecCCeec-c--CCCEEEEEEECCCCCEEEEEec
Q 018011 175 -IAVDDVAKTVELIKAKGGKVTREPGPV-K--GGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 175 -f~V~Dld~~~~~l~~~G~~~~~~p~~~-~--~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+.++|--++.++|+++|+....+|.-. . .|..+.+|+.||.||.+|+-.-
T Consensus 76 Vl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~f 129 (138)
T COG3565 76 VLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGF 129 (138)
T ss_pred EEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecc
Confidence 677788999999999999887666422 1 2678889999999999998643
No 160
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.14 E-value=3.7e-10 Score=97.74 Aligned_cols=98 Identities=20% Similarity=0.331 Sum_probs=74.1
Q ss_pred CcceeeeeeC--ChHHHHHHHHHhhCCeeeeeecCCC--CceEEEEeccCCCCcceEEEEeecCCc--c-------cccC
Q 018011 230 PLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPE--YKYTIAMMGYGPEDKNVVLELTYNYGV--T-------DYDK 296 (362)
Q Consensus 230 ~i~~v~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~l~l~~~~~~--~-------~~~~ 296 (362)
+|+||.+.|+ |++++.+||+++|||+.....+.++ .+.....+..+ +....++|...... . ..+.
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~--~g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASP--DGKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECC--CCcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 5899999999 9999999999999999877654432 33444444432 23566777653321 1 1235
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHcCCeeecCCc
Q 018011 297 GNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPG 329 (362)
Q Consensus 297 g~g~~hiaf~v~Did~~~~~l~~~G~~v~~~p~ 329 (362)
|+|++||||.|+|+++++++|+++|++++..|.
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~ 113 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPIPD 113 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccCch
Confidence 789999999999999999999999999998874
No 161
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.08 E-value=1.6e-09 Score=95.32 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=86.4
Q ss_pred CCCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcc-cccCCCceeEEEEE
Q 018011 228 PEPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT-DYDKGNAYAQIAIG 306 (362)
Q Consensus 228 ~~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~-~~~~g~g~~hiaf~ 306 (362)
+..+..++|+|.|++++..||++++|+++..+.+. .+.++.+. ...+.|.+..... +.....|..|+||-
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~------~v~L~vgg---~~LL~L~q~~~a~~~~~~~aGLyH~AfL 78 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDG------SVTLGVGG---TPLLTLEQFPDARRPPPRAAGLYHTAFL 78 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCc------eEEEeeCC---EEEEEEEeCCCCCCCCccccceeeeeee
Confidence 45688999999999999999999999999865431 12233322 3566665543322 33566799999999
Q ss_pred eCC---HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 307 TDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 307 v~D---id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
+++ +.+.+.++.+.|..+. +..++.. .-.+||.||+||-||+.-++.
T Consensus 79 lP~r~~L~~~l~hl~~~~~~l~-Ga~DH~v--SEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 79 LPTREDLARVLNHLAEEGIPLV-GASDHLV--SEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred cCCHHHHHHHHHHHHhcCCccc-ccCcchh--heeeeecCCCCCeEEEEecCC
Confidence 984 6667788888998876 5555555 357899999999999987653
No 162
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.06 E-value=2.1e-09 Score=81.43 Aligned_cols=117 Identities=18% Similarity=0.176 Sum_probs=77.6
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccc--------cCCCcee
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDY--------DKGNAYA 301 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~--------~~g~g~~ 301 (362)
.+.|+.+.|.|++++++||.++||.+.-++.+ .++.++.- ++.+........... .......
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd------~wvdfDfy----GHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHf 73 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRSTD------TWVDFDFY----GHQVVAHLTPQPDSQGSGKVDGHGVPPPHF 73 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhcccccccccc------eEEEeeec----ccEEEEEecCCcccccCcccCCCCCCCccc
Confidence 36799999999999999999999999865543 22222211 222222111111000 0112344
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCccc-CC--CCceEEEEECCCCCeEEEEcccc
Q 018011 302 QIAIGTDDVYKTAEAIKLFGGKVTREPGPL-PG--INTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 302 hiaf~v~Did~~~~~l~~~G~~v~~~p~~~-~~--~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
-+.|.++|-.++.++|+++|+.+..+|.-. .+ +..+..++.||+||.+|+-.-.+
T Consensus 74 GvVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~ 131 (138)
T COG3565 74 GVVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRD 131 (138)
T ss_pred eEEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccc
Confidence 567788999999999999999999888532 11 23478999999999999865443
No 163
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.04 E-value=1.5e-09 Score=103.13 Aligned_cols=102 Identities=24% Similarity=0.396 Sum_probs=72.5
Q ss_pred hcccceeeEEEEEeC--CHHHHHHHHHHhcCCEEEEEecCCCC--ceeEEEEeecCCCceEEEEEeecCC---CC-----
Q 018011 95 KKDKRRMLHVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPEE--KYTNAFLGYGPEDSHFVIELTYNYG---VD----- 162 (362)
Q Consensus 95 ~~~i~~l~hV~l~v~--d~~~a~~FY~~vLG~~~~~~~~~~~~--~~~~~~l~~g~~~~~~~l~l~~~~~---~~----- 162 (362)
...+.+|+||++.|+ |++++++||+++|||++....+.... ......+.. . ...+.+++..+.. ..
T Consensus 153 ~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~-~-~g~~~i~L~ep~~~~~~s~i~~f 230 (353)
T TIGR01263 153 GVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMAS-P-DGKVKIPLNEPASGKDKSQIEEF 230 (353)
T ss_pred CCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEEC-C-CCcEEEEEeccCCCCCCCHHHHH
Confidence 345789999999999 99999999999999998876654321 111112221 1 2235566655311 11
Q ss_pred -CCcCCCCeEEEEEEeCCHHHHHHHHHHcCCeeecCC
Q 018011 163 -KYDIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREP 198 (362)
Q Consensus 163 -~~~~g~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p 198 (362)
....|.|++||||.|+|+++++++|+++|+++...|
T Consensus 231 l~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 231 LEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 112478999999999999999999999999988654
No 164
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.00 E-value=1.3e-08 Score=82.32 Aligned_cols=111 Identities=17% Similarity=0.067 Sum_probs=72.7
Q ss_pred eeee-CChHHHHHHHHHhhCCeeeeeecCC----------CCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEE
Q 018011 235 MLRV-GDLDRSINFYEQAFGMELLRKRDNP----------EYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQI 303 (362)
Q Consensus 235 ~l~v-~D~~~a~~FY~~~LG~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hi 303 (362)
.|.+ .|.++|++||+++||.++......+ .+......+..+ +..+.+......... .+.+..++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~----g~~l~~~d~~~~~~~-~~~~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG----GQRLMASDGGPGFPF-TFGNGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC----CEEEEEEcCCCCCCC-CCCCCEEE
Confidence 4666 8999999999999999987654311 122222223221 233433332211111 13345678
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 018011 304 AIGTDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 352 (362)
Q Consensus 304 af~v~D---id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~ 352 (362)
++.|+| +++++++|.+.| +++.+|...+++ .+..+++||+|+.|+|.
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWS-PLFGWVTDRFGVSWQIN 128 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCcc-cccEEEECCCCCEEEeC
Confidence 898886 777888876655 888888877775 48999999999999973
No 165
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.98 E-value=2.3e-08 Score=80.49 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=83.4
Q ss_pred eeeeC-ChHHHHHHHHHhhCCeeeeeecCCC----------CceEEEEeccCCCCcceEEEEeecCCcccccCC-CceeE
Q 018011 235 MLRVG-DLDRSINFYEQAFGMELLRKRDNPE----------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKG-NAYAQ 302 (362)
Q Consensus 235 ~l~v~-D~~~a~~FY~~~LG~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g-~g~~h 302 (362)
.|.+. |.++|++||+++||.++.......+ +...-.-+..+ +..+-+....+......+ +...-
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~----g~~im~sd~~~~~~~~~~~~~s~~ 80 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG----GSTIMLSDAFPDMGATEGGGTSLS 80 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC----CEEEEEecCCCccCcccCCCeeEE
Confidence 46677 9999999999999999887765544 22222223322 233333322221122222 34567
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 303 IAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 303 iaf~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
+.+.++|+++.++++.+.|++++.++....++ .++..++||.|+.|.|.....
T Consensus 81 l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 81 LDLYVEDVDAVFERAAAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEEehHHHHHHHHHHhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCcc
Confidence 88888999999999999999999999888886 489999999999999987653
No 166
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.95 E-value=1.1e-08 Score=87.48 Aligned_cols=147 Identities=22% Similarity=0.331 Sum_probs=84.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecC---CC---CCC------cCCC
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY---GV---DKY------DIGT 168 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~---~~---~~~------~~g~ 168 (362)
|+||++.|+|++++.++|++.|||++......+..+..+..+.++.. .||+..-. .. ... ..+.
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~----YlEli~i~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDG----YLELIAIDPEAPAPDRGRWFGLDRLAGGE 76 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSS----EEEEEEES-HHHSTGGGT-TTTHHHHT--
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCc----eEEEEEeCCcccccccccceechhhcCCC
Confidence 79999999999999999988899999988877776667777777553 34444311 11 111 1467
Q ss_pred CeEEEEEEeCCHHHHHHHHHHcCCeeecCCeeccCC--CEEEEEEECC----CCCEEEEEecC-CC---------CCCcc
Q 018011 169 GFGHFGIAVDDVAKTVELIKAKGGKVTREPGPVKGG--NTVIAFIEDP----DGYKFELLERG-PT---------PEPLC 232 (362)
Q Consensus 169 ~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g--~~~~~~~~DP----dG~~~el~~~~-~~---------~~~i~ 232 (362)
|+.++|++++|+++..++|++.|+... .+...+++ ..+.++..+. .+..-.+++.. +. ..+|.
T Consensus 77 g~~~~~l~t~d~~~~~~~l~~~G~~~~-~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~~~~~~~~~h~ng~~~i~ 155 (175)
T PF13468_consen 77 GLYGWALRTDDIEAVAARLRAAGLDAG-SRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWETPHPEWARHPNGALGIT 155 (175)
T ss_dssp EEEEEEEE-S-HHHHHHHHHTTT-EEE-EEEEEEE-EEEEEEEEEE-SS---SS---EEEEESS-CCHHTTT--TTEEEE
T ss_pred CeEEEEEecCCHHHHHHHHHhcCCCCC-CcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeCCCCcccccCCCccceEE
Confidence 899999999999999999999997521 11112211 1334555554 23444555332 21 13689
Q ss_pred eeeeeeCChHHHHHHHHHhh
Q 018011 233 QVMLRVGDLDRSINFYEQAF 252 (362)
Q Consensus 233 ~v~l~v~D~~~a~~FY~~~L 252 (362)
+|.+.++|++++.++|.++|
T Consensus 156 ~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 156 RVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEETTHHHHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHhhC
Confidence 99999999999999999875
No 167
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.92 E-value=3e-09 Score=85.05 Aligned_cols=122 Identities=26% Similarity=0.432 Sum_probs=74.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCc---eeEEEEeecCCCceEEEEE--------eecCCCCCCcCC
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEK---YTNAFLGYGPEDSHFVIEL--------TYNYGVDKYDIG 167 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~---~~~~~l~~g~~~~~~~l~l--------~~~~~~~~~~~g 167 (362)
++++||.|.|+|++++++||+++||+++.......... ....+.............. ............
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 47899999999999999999999999998876532221 1111111110000000000 000000000011
Q ss_pred --CCeEEEEEEeCC---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEe
Q 018011 168 --TGFGHFGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLE 223 (362)
Q Consensus 168 --~~~~hiaf~V~D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~ 223 (362)
.+..|+++.++| ..+........|..+..... ... ...+||+||||+++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 247799999998 66777777788888654433 222 227999999999999973
No 168
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.87 E-value=1.7e-07 Score=75.51 Aligned_cols=116 Identities=21% Similarity=0.213 Sum_probs=85.4
Q ss_pred EEeC-CHHHHHHHHHHhcCCEEEEEecCCC----------CceeEEEEeecCCCceEEEEEeecCCCCCCcCCCC-eEEE
Q 018011 106 YRVG-DLDRTIKFYTECLGMKLLRKRDIPE----------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTG-FGHF 173 (362)
Q Consensus 106 l~v~-d~~~a~~FY~~vLG~~~~~~~~~~~----------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~-~~hi 173 (362)
|... |.+++++||+++||.++..+....+ +....+.+..++. .|.+....+......+++ -.-|
T Consensus 6 l~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~----~im~sd~~~~~~~~~~~~~s~~l 81 (136)
T COG2764 6 LFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGS----TIMLSDAFPDMGATEGGGTSLSL 81 (136)
T ss_pred EEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCE----EEEEecCCCccCcccCCCeeEEE
Confidence 6777 9999999999999999998876665 4566666766643 233333222222222222 2347
Q ss_pred EEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCC
Q 018011 174 GIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (362)
Q Consensus 174 af~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~ 226 (362)
.+.++|++++.+++.+.|+++..++.+...| .++..++||.|+.|-|.+...
T Consensus 82 ~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG-~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 82 DLYVEDVDAVFERAAAAGATVVMPLEDTFWG-DRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred EEEehHHHHHHHHHHhcCCeEEecchhcCcc-cceEEEECCCCCEEEEecCcc
Confidence 7888899999999999999999998887765 567789999999999987643
No 169
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.86 E-value=1e-07 Score=76.92 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=72.9
Q ss_pred EEEe-CCHHHHHHHHHHhcCCEEEEEecCC----------CCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEE
Q 018011 105 VYRV-GDLDRTIKFYTECLGMKLLRKRDIP----------EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHF 173 (362)
Q Consensus 105 ~l~v-~d~~~a~~FY~~vLG~~~~~~~~~~----------~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hi 173 (362)
-|.+ .|.+++++||+++||+++......+ .+.+..+.+..++. .+.+...........+ .-.++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~----~l~~~d~~~~~~~~~~-~~~~l 78 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQ----RLMASDGGPGFPFTFG-NGISL 78 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCE----EEEEEcCCCCCCCCCC-CCEEE
Confidence 3667 8999999999999999988765321 12334455555442 2223322111111122 34468
Q ss_pred EEEeCC---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEE
Q 018011 174 GIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 221 (362)
Q Consensus 174 af~V~D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el 221 (362)
++.|+| +++++++|.+.| ++..++...+.| .+..+++||+|+.|+|
T Consensus 79 ~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g-~~~~~v~Dp~G~~W~i 127 (128)
T cd06588 79 SVECDSEEEADRLFEALSEGG-TVLMPLQKTFWS-PLFGWVTDRFGVSWQI 127 (128)
T ss_pred EEECCCHHHHHHHHHHHhcCC-eEeccchhcCcc-cccEEEECCCCCEEEe
Confidence 899986 778888987665 888777776654 5678999999999987
No 170
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.85 E-value=3.6e-08 Score=76.19 Aligned_cols=113 Identities=22% Similarity=0.216 Sum_probs=74.5
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEee-------cCCcccccCCCceeEE
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTY-------NYGVTDYDKGNAYAQI 303 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~-------~~~~~~~~~g~g~~hi 303 (362)
...|.|.|.|++++++|| ..||++.-+...+... ..++-.+ .-.++-|.. +.+. .......-..|
T Consensus 4 mIFvNLPVkDL~~S~~Fy-~alGfk~Npq~sde~a---~~mi~~~---ni~vMLL~~~~fq~F~~~~i-~dt~~s~evli 75 (133)
T COG3607 4 MIFVNLPVKDLEASKAFY-TALGFKFNPQFSDEDA---ACMIISD---NIFVMLLEEARFQTFTKRQI-ADTTKSREVLI 75 (133)
T ss_pred EEEEecchhhHHHHHHHH-HHhCcccCCCcccccc---eeEEEec---cEEEEEeccHHhhhhccccc-ccccCCceEEE
Confidence 357889999999999999 5599998655433221 1111110 112221211 0111 11233466789
Q ss_pred EEEeC---CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 304 AIGTD---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 304 af~v~---Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
++.+. ++|+.+++..++|++...+|.++.. .+...|.|||||.||++-
T Consensus 76 ~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~ 126 (133)
T COG3607 76 SLSAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLW 126 (133)
T ss_pred EeccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEE
Confidence 99886 6899999999999999877765544 456789999999999964
No 171
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=98.80 E-value=1.8e-08 Score=80.44 Aligned_cols=121 Identities=20% Similarity=0.242 Sum_probs=74.6
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCc---eEEEEeccCCCCcceEEE--------EeecCCcc-cccCC
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK---YTIAMMGYGPEDKNVVLE--------LTYNYGVT-DYDKG 297 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~l~--------l~~~~~~~-~~~~g 297 (362)
.+.|+.+.|+|++++++||+++||+++.......... ....+............. ........ ....+
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 4789999999999999999999999998765432221 112222211000000000 00000000 01111
Q ss_pred -CceeEEEEEeCC---HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 298 -NAYAQIAIGTDD---VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 298 -~g~~hiaf~v~D---id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
.+..|+++.++| ...........|..+...+. ... +..+|++||||+.||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~--~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRG--GVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCc--ceEEEEECCCCcEEEeeC
Confidence 347899999998 67777788888988766544 222 238999999999999974
No 172
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.79 E-value=1.5e-08 Score=96.03 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=72.0
Q ss_pred ccceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCC-----ceeEEEEeecCCCceEEEEEeecCC-------CCC-
Q 018011 97 DKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEE-----KYTNAFLGYGPEDSHFVIELTYNYG-------VDK- 163 (362)
Q Consensus 97 ~i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~-----~~~~~~l~~g~~~~~~~l~l~~~~~-------~~~- 163 (362)
.+.+|+||++.|++++.++.||+++|||+.....+.+.. ......+..+. ..+.+.|..+.. ..+
T Consensus 177 gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~--g~v~ipLnEP~~~~~~~SqI~eF 254 (398)
T PLN02875 177 GLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN--EMVLLPLNEPTFGTKRKSQIQTY 254 (398)
T ss_pred CcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC--CcEEEEeccCCCCCCCcChHHHH
Confidence 367999999999999999999999999998865543322 12334443332 234556555321 111
Q ss_pred --CcCCCCeEEEEEEeCCHHHHHHHHHHc----CCeeecCC
Q 018011 164 --YDIGTGFGHFGIAVDDVAKTVELIKAK----GGKVTREP 198 (362)
Q Consensus 164 --~~~g~~~~hiaf~V~Dld~~~~~l~~~----G~~~~~~p 198 (362)
...|.|++||||.|+|+.+++++|+++ |+++...|
T Consensus 255 L~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 255 LEHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred HHhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 125789999999999999999999999 99987543
No 173
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=98.72 E-value=2e-07 Score=72.12 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=74.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecC--------CCCCCcCCCCeEE
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNY--------GVDKYDIGTGFGH 172 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~--------~~~~~~~g~~~~h 172 (362)
.--|.|.|+|++++++||+. |||+........ ..+.++..+. +.+.|.... +... .....-.-
T Consensus 4 mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde---~a~~mi~~~n----i~vMLL~~~~fq~F~~~~i~d-t~~s~evl 74 (133)
T COG3607 4 MIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDE---DAACMIISDN----IFVMLLEEARFQTFTKRQIAD-TTKSREVL 74 (133)
T ss_pred EEEEecchhhHHHHHHHHHH-hCcccCCCcccc---cceeEEEecc----EEEEEeccHHhhhhccccccc-ccCCceEE
Confidence 34577999999999999997 999986543211 1222222221 222222211 1111 11223345
Q ss_pred EEEEeCC---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCC
Q 018011 173 FGIAVDD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGP 226 (362)
Q Consensus 173 iaf~V~D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~ 226 (362)
+++.+.+ +|+++++..++|+++..++.+.+. .+..-|.||||+.||++--.+
T Consensus 75 i~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gf--MYg~~fqDpDGh~wE~l~m~~ 129 (133)
T COG3607 75 ISLSAGSREEVDELVDKALEAGGKPANEPQDEGF--MYGRSFQDPDGHVWEFLWMDP 129 (133)
T ss_pred EEeccCcHHHHHHHHHHHHHcCCCCCCCcccccc--ccceeeeCCCCCeEEEEEeCH
Confidence 7888774 999999999999999777766654 444568999999999986543
No 174
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.60 E-value=7.8e-08 Score=85.79 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=88.7
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCC--ceEEEEeccCCCCcceEEEEeecCCcc-----cccCCCcee
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY--KYTIAMMGYGPEDKNVVLELTYNYGVT-----DYDKGNAYA 301 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~l~~~~~~~-----~~~~g~g~~ 301 (362)
.+++||++.|+|...+++||+..|||++........+ .+.-..++ ..+...++.-.++++.. -..+|.++-
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr--~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvk 93 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALR--QGKIVFVFNSAYNPDNSEYGDHLVKHGDGVK 93 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhh--cCCEEEEEecCCCCCchhhhhhhhhcccchh
Confidence 3689999999999999999999999998764432211 11111122 11111222222222211 124677889
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCC--ceEEEEECCCCCeEEEEcccccccc
Q 018011 302 QIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGIN--TKITACLDPDGWKTVFVDNVDFLKE 360 (362)
Q Consensus 302 hiaf~v~Did~~~~~l~~~G~~v~~~p~~~~~~~--~~~~~~~DPdG~~iel~~~~~~~~~ 360 (362)
-+||+|+|++++.+.+.++|+++..+|....... -+++.++.+--....+++++.+.++
T Consensus 94 dvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~thtlvEr~~y~g~ 154 (381)
T KOG0638|consen 94 DVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTHTLVERKGYKGP 154 (381)
T ss_pred ceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhhhhhhhcccccc
Confidence 9999999999999999999999999997665433 3678888887777777777766554
No 175
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.55 E-value=5.5e-06 Score=63.94 Aligned_cols=113 Identities=25% Similarity=0.331 Sum_probs=66.0
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCCHH
Q 018011 102 LHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVA 181 (362)
Q Consensus 102 ~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~Dld 181 (362)
-+-+|.|.|-+..++||+++|||++..+.. ..++++.......+.++-.+..........-.++++.+.|++..
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~ 75 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPK 75 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHH
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHH
Confidence 356799999999999999999999998876 56677655444566666554322222222236889999999977
Q ss_pred HHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 182 KTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 182 ~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
++. .|.++|.++. .-..+..++.+-..+|+|..|.+...
T Consensus 76 EIe-~LLar~~~~~---~l~kg~~gyAfe~vSPEgd~~llhaE 114 (125)
T PF14506_consen 76 EIE-ALLARGAQYD---RLYKGKNGYAFEAVSPEGDRFLLHAE 114 (125)
T ss_dssp HHH-HHHHC-S--S---EEEE-SSSEEEEEE-TT--EEEEE--
T ss_pred HHH-HHHhcccccc---eeEEcCCceEEEEECCCCCEEEEEEc
Confidence 644 4556666543 22333345556667999999998854
No 176
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.53 E-value=6.6e-07 Score=82.26 Aligned_cols=106 Identities=19% Similarity=0.276 Sum_probs=70.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeC
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD 178 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~ 178 (362)
-+.-||.|.|.|++++++||+++||+.. ...+ ..+.+ + ..-+.+-+.++ .. ....-.-+|+.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde------~a~cm--~--dtI~vMllt~~-D~----~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD------KLFLL--G--KTSLYLQQTKA-EK----KNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC------ccccc--c--CcEEEEEecCC-CC----CCcceEEEEeccC
Confidence 4566999999999999999999988874 2221 11111 2 22222323332 11 1223345788888
Q ss_pred C---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 179 D---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 179 D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+ +|+++++..++|++...++.+++. + --|.||||+.||++-.
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf--~--rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP--L--RLVFDLDGHIWVVSCV 354 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC--c--ceeECCCCCEEEEEEE
Confidence 5 999999999999977666655543 3 3479999999999854
No 177
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.41 E-value=1.8e-06 Score=79.50 Aligned_cols=105 Identities=21% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD 308 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~ 308 (362)
....||.|.|.|+++|++||+++|++.. .. .+. .. .++ ...+.+..... ......-..+++.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs--de~---a~-cm~------dtI~vMllt~~---D~~~~~evLl~Ls~~ 309 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD--GDK---LF-LLG------KTSLYLQQTKA---EKKNRGTTTLSLELE 309 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC-CC--CCc---cc-ccc------CcEEEEEecCC---CCCCcceEEEEeccC
Confidence 4567999999999999999999988875 22 111 11 121 12222222211 112345677888886
Q ss_pred ---CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEc
Q 018011 309 ---DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVD 353 (362)
Q Consensus 309 ---Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~ 353 (362)
++|+.+++..++|++...+|.++.. .--|.|||||.||++-
T Consensus 310 Sre~VD~lv~~A~aaGG~~~~~~~D~Gf----~rsf~D~DGH~WEi~~ 353 (357)
T PRK01037 310 CEHDFVRFLRRWEMLGGELGEQADGHFP----LRLVFDLDGHIWVVSC 353 (357)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCcccccC----cceeECCCCCEEEEEE
Confidence 5899999999999987666655444 4567999999999984
No 178
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.36 E-value=1.3e-06 Score=70.77 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=79.0
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCC--CcCCCCeEEEEE
Q 018011 98 KRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDK--YDIGTGFGHFGI 175 (362)
Q Consensus 98 i~~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~--~~~g~~~~hiaf 175 (362)
+.+++||++.++|.+++..+++ .|||+.+.+.... .+..++.|. ..+.+.-.++..... ..+|+++.-++|
T Consensus 7 ~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk----~v~l~rQG~--I~~vln~ep~s~a~~~~~~HG~sv~aiaf 79 (139)
T PF14696_consen 7 LDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK----DVTLYRQGD--INFVLNSEPDSFAAEFAAQHGPSVCAIAF 79 (139)
T ss_dssp EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC----SEEEEEETT--EEEEEEEESTSCHHHHHHHHSSEEEEEEE
T ss_pred CCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc----ceEEEEeCC--EEEEEeCCCcchHHHHHHhcCCEEEEEEE
Confidence 4589999999999888888885 5999998865321 233344442 233333222211111 137899999999
Q ss_pred EeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCCCC
Q 018011 176 AVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPE 229 (362)
Q Consensus 176 ~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~~~ 229 (362)
+|+|.++++++..++|++...+| ...+.....-++.++|-++.|+++.....
T Consensus 80 rV~Da~~A~~rA~~~GA~~~~~~--~~~~e~~~paI~g~G~sl~yfVdr~~~~~ 131 (139)
T PF14696_consen 80 RVDDAAAAYERAVALGAEPVQEP--TGPGELNIPAIRGIGGSLHYFVDRYGDKG 131 (139)
T ss_dssp EES-HHHHHHHHHHTT--EEEEE--EETT-BEEEEEE-CCC-EEEEEE--SSS-
T ss_pred EeCCHHHHHHHHHHcCCcCcccC--CCCCcEeeeeEEccCCCEEEEEecCCCCC
Confidence 99999999999999999987654 33345667788999999999998754433
No 179
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.22 E-value=3.6e-06 Score=76.79 Aligned_cols=99 Identities=22% Similarity=0.344 Sum_probs=70.4
Q ss_pred ccceeeEEEEEeC--CHHHHHHHHHHhcCCEEEEEecCCCCc---eeEEEEeecCCCceEEEEEeecCCCCC-------C
Q 018011 97 DKRRMLHVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPEEK---YTNAFLGYGPEDSHFVIELTYNYGVDK-------Y 164 (362)
Q Consensus 97 ~i~~l~hV~l~v~--d~~~a~~FY~~vLG~~~~~~~~~~~~~---~~~~~l~~g~~~~~~~l~l~~~~~~~~-------~ 164 (362)
.+..|+||+.+|+ .++....||+++|||+.....+.++.. +.-++.. .. +.+-|-+........ .
T Consensus 164 g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~S--p~-G~vrlplN~s~~~~sqi~efl~~ 240 (363)
T COG3185 164 GLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVS--PC-GKVRLPLNESADDKSQIGEFLRE 240 (363)
T ss_pred CceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEec--CC-CcEEeecccCCCchhHHHHHHHH
Confidence 3568999999986 899999999999999999887766532 2222222 11 123333332211111 2
Q ss_pred cCCCCeEEEEEEeCCHHHHHHHHHHcCCeeecCC
Q 018011 165 DIGTGFGHFGIAVDDVAKTVELIKAKGGKVTREP 198 (362)
Q Consensus 165 ~~g~~~~hiaf~V~Dld~~~~~l~~~G~~~~~~p 198 (362)
.+|.|+.||||.++|+-+++++++++|++....|
T Consensus 241 y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 241 YRGEGIQHIAFGTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred hCCCcceEEEecccHHHHHHHHHHHcCCccCCCc
Confidence 3788999999999999999999999999987544
No 180
>PRK10148 hypothetical protein; Provisional
Probab=98.19 E-value=8.4e-05 Score=61.41 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=70.8
Q ss_pred eeee-CChHHHHHHHHHhhCCeeeeeec---CC-----------------CCceEEEEeccCCCCcceEEEEeecCCccc
Q 018011 235 MLRV-GDLDRSINFYEQAFGMELLRKRD---NP-----------------EYKYTIAMMGYGPEDKNVVLELTYNYGVTD 293 (362)
Q Consensus 235 ~l~v-~D~~~a~~FY~~~LG~~~~~~~~---~~-----------------~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~ 293 (362)
.|.+ .|.++|.+||+++||.++..... .+ ++......+..+ +..+.+..... .
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~----g~~lm~sD~~~--~ 79 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIA----GSDIMMSDAIP--S 79 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEEC----CEEEEEECCCC--C
Confidence 4555 48999999999999988764421 11 111222222221 22232221111 1
Q ss_pred ccCCCceeEEEEEeCCHHH---HHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 294 YDKGNAYAQIAIGTDDVYK---TAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 294 ~~~g~g~~hiaf~v~Did~---~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
........++++.++|.++ ++++| +.|++++.++...+++ .++..++||.|+.|.|...+
T Consensus 80 ~~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg-~~~g~v~D~fGi~W~l~~~~ 142 (147)
T PRK10148 80 GKAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWA-HGFGKVTDKFGVPWMINVVK 142 (147)
T ss_pred cCCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchh-hccEEEECCCCCEEEEEecC
Confidence 1111135677888888776 55555 6999999999888875 38899999999999997653
No 181
>PRK10148 hypothetical protein; Provisional
Probab=98.05 E-value=0.00041 Score=57.30 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=74.4
Q ss_pred EEeC-CHHHHHHHHHHhcCCEEEEEec---C-----------------CCCceeEEEEeecCCCceEEEEEeecCCCCCC
Q 018011 106 YRVG-DLDRTIKFYTECLGMKLLRKRD---I-----------------PEEKYTNAFLGYGPEDSHFVIELTYNYGVDKY 164 (362)
Q Consensus 106 l~v~-d~~~a~~FY~~vLG~~~~~~~~---~-----------------~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~ 164 (362)
|... |.+++++||+++||.++..... . +.+....+.+..++. .+.+..... ...
T Consensus 7 L~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~----~lm~sD~~~-~~~ 81 (147)
T PRK10148 7 LSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGS----DIMMSDAIP-SGK 81 (147)
T ss_pred EEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCE----EEEEECCCC-CcC
Confidence 5554 8999999999999998765431 1 123344566666542 222222111 111
Q ss_pred cCCCCeEEEEEEeCCHHH---HHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCCC
Q 018011 165 DIGTGFGHFGIAVDDVAK---TVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTP 228 (362)
Q Consensus 165 ~~g~~~~hiaf~V~Dld~---~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~~ 228 (362)
..++ -.++++.++|.++ +.++| +.|+++..++.+...| .++..++||.|+.|.|......|
T Consensus 82 ~~~~-~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg-~~~g~v~D~fGi~W~l~~~~~~~ 145 (147)
T PRK10148 82 AHYS-GFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWA-HGFGKVTDKFGVPWMINVVKQQP 145 (147)
T ss_pred CCCC-eEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchh-hccEEEECCCCCEEEEEecCCCC
Confidence 1222 3467888888766 55555 6899999888777654 56788999999999998765444
No 182
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=97.95 E-value=0.00019 Score=55.58 Aligned_cols=112 Identities=23% Similarity=0.351 Sum_probs=62.1
Q ss_pred eeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcc--cccCCCceeEEEEEeCCH
Q 018011 233 QVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT--DYDKGNAYAQIAIGTDDV 310 (362)
Q Consensus 233 ~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~--~~~~g~g~~hiaf~v~Di 310 (362)
+-.|.|.|-+...+||++.|||++..+.. .++.++.. .....+.|-..++.. +......+.++.+.|++.
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~--~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~ 74 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQ--QKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNP 74 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-T--T--EEEEEEE--TTT-B--SSS-SEEEEEEEESSH
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCC--CCceEEEEecCCccccccccCcceeeEEEEEcCCH
Confidence 45789999999999999999999986542 34455543 233444443333222 223345789999999885
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 311 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 311 d~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
.+ .+.|.++|.++.. -..+-.|+.+-..+|.|..|.+-...+
T Consensus 75 ~E-Ie~LLar~~~~~~---l~kg~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 75 KE-IEALLARGAQYDR---LYKGKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp HH-HHHHHHC-S--SE---EEE-SSSEEEEEE-TT--EEEEE--S-
T ss_pred HH-HHHHHhcccccce---eEEcCCceEEEEECCCCCEEEEEEcCC
Confidence 54 4556666665332 122333567778899999999987654
No 183
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.82 E-value=0.00016 Score=58.73 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=76.4
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcc--c--ccCCCceeEEE
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVT--D--YDKGNAYAQIA 304 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~--~--~~~g~g~~hia 304 (362)
..+++|.+.++|.+++..|+ +.|||+...+... ....++.-+ ...+.+....... . ..+|+++.-++
T Consensus 8 ~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hrs--k~v~l~rQG------~I~~vln~ep~s~a~~~~~~HG~sv~aia 78 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALAQLF-TALGFQPVARHRS--KDVTLYRQG------DINFVLNSEPDSFAAEFAAQHGPSVCAIA 78 (139)
T ss_dssp EEEEEEEEE-SSTTSCHHHH-CCCCEEEECCECC--CSEEEEEET------TEEEEEEEESTSCHHHHHHHHSSEEEEEE
T ss_pred CCeEEEEEecCCHHHHHHHH-HHhCcceEEecCC--cceEEEEeC------CEEEEEeCCCcchHHHHHHhcCCEEEEEE
Confidence 36889999999988888877 5799998765322 223443222 3334443322111 1 14688999999
Q ss_pred EEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 305 IGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 305 f~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
|.|+|..+++++..+.|++.+..|.... .-.+..++.+.|..+.|+++.+
T Consensus 79 frV~Da~~A~~rA~~~GA~~~~~~~~~~--e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 79 FRVDDAAAAYERAVALGAEPVQEPTGPG--ELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp EEES-HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--S
T ss_pred EEeCCHHHHHHHHHHcCCcCcccCCCCC--cEeeeeEEccCCCEEEEEecCC
Confidence 9999999999999999999887653222 2468899999999999999864
No 184
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.70 E-value=0.00012 Score=62.46 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=52.3
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCC--ceEEEEeccCCCCcceEEEEeecCCcccc------------cC
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEY--KYTIAMMGYGPEDKNVVLELTYNYGVTDY------------DK 296 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~l~~~~~~~~~------------~~ 296 (362)
|+|+.+.|+|++++.++|++.|||++......+.. ...++.++ ...||+....+.... ..
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~------~~YlEli~i~~~~~~~~~~~~~~~~~~~~ 74 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG------DGYLELIAIDPEAPAPDRGRWFGLDRLAG 74 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S------SSEEEEEEES-HHHSTGGGT-TTTHHHHT
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC------CceEEEEEeCCcccccccccceechhhcC
Confidence 68999999999999999999999999877665542 34555554 237777653211111 24
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHcCCe
Q 018011 297 GNAYAQIAIGTDDVYKTAEAIKLFGGK 323 (362)
Q Consensus 297 g~g~~hiaf~v~Did~~~~~l~~~G~~ 323 (362)
+.|..+++|.++|+++..++|++.|+.
T Consensus 75 ~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 75 GEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp --EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred CCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 678999999999999999999999986
No 185
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.37 E-value=0.21 Score=39.36 Aligned_cols=96 Identities=19% Similarity=0.372 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHhcCC-EEEEEecCCC------CceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeCC--
Q 018011 109 GDLDRTIKFYTECLGM-KLLRKRDIPE------EKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDD-- 179 (362)
Q Consensus 109 ~d~~~a~~FY~~vLG~-~~~~~~~~~~------~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~D-- 179 (362)
.+.++|.+||+++||- ++......++ +....+.+..++. .+...... +....+++ ..+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~----~lm~~D~~--~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQ----KLMASDGG--PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTE----EEEEEEES--TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCe----EEEEECCC--CCCCCCCc-EEEEEEcCCHH
Confidence 6899999999999995 3333333322 2334445555432 12222211 22223444 358888888
Q ss_pred -HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEE
Q 018011 180 -VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELL 222 (362)
Q Consensus 180 -ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~ 222 (362)
++++.++|.+.|- ... .+..+.|.-|+.|.|+
T Consensus 84 e~~~~f~~Ls~gG~----------~~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ----------WFS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE----------TCC-EEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC----------ccc-eeEEEEeCCCCEEEeC
Confidence 5666667777764 223 6678999999999885
No 186
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.24 E-value=0.0083 Score=45.47 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=42.4
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeC--
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTD-- 308 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~-- 308 (362)
+..+.|+|+| +++.+||+++||-+.. ..+.+.... +.-|.+ +.+..-+.-.+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~----G~DL~~-------~~~~twDLe~Lkf~V~~~ 64 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQ----GPDLTI-------ENNETWDLEMLKFQVPKD 64 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHHT---------TTEEEEE-------CCGSS--------TTSBSSEEEEEEEES-S
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeecc----CCcccc-------CCCcEEeeEEEEEEecCc
Confidence 5678999999 8899999998873321 011111110 000000 1122236677888998
Q ss_pred -CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 018011 309 -DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 351 (362)
Q Consensus 309 -Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel 351 (362)
|+.++.+.+.+.++ -.+ . ..++..+.||+|.+|.|
T Consensus 65 ~Dl~~L~~~le~~~~--fid-----K-k~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 65 FDLAALKSHLEEQEF--FID-----K-KEKFLVTSDPSQIELWF 100 (101)
T ss_dssp --HHHHHHHTTTS-E--E-------T-T-SEEEEE-TTS-EEEE
T ss_pred ccHHHHHHHhcccce--Eec-----C-CceEEEEECCcceEEEe
Confidence 56777788877333 222 1 15899999999999876
No 187
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=95.70 E-value=0.36 Score=38.02 Aligned_cols=96 Identities=23% Similarity=0.301 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHhhCCe-eeeeecCCC------CceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCC--
Q 018011 239 GDLDRSINFYEQAFGME-LLRKRDNPE------YKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDD-- 309 (362)
Q Consensus 239 ~D~~~a~~FY~~~LG~~-~~~~~~~~~------~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~D-- 309 (362)
.+.++|.+||.++||-. +....+.++ +......+..+ +..+-... .+ .....+++ ..+++.++|
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~----g~~lm~~D-~~-~~~~~~~~-~sl~i~~~~~e 83 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIG----GQKLMASD-GG-PDFPFGNN-ISLCIECDDEE 83 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEET----TEEEEEEE-ES-TS----TT-EEEEEEESSHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEEC----CeEEEEEC-CC-CCCCCCCc-EEEEEEcCCHH
Confidence 78999999999999843 222222221 11111122211 22222211 11 12223333 567777776
Q ss_pred -HHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEE
Q 018011 310 -VYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFV 352 (362)
Q Consensus 310 -id~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~ 352 (362)
+++++++|.+.|- +. .++..++|..|..|.|+
T Consensus 84 e~~~~f~~Ls~gG~---------~~--~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 84 EIDRIFDKLSEGGQ---------WF--SRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHHHTTTE---------TC--CEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHHcCCC---------cc--ceeEEEEeCCCCEEEeC
Confidence 5566777777665 22 37889999999999886
No 188
>PF15067 FAM124: FAM124 family
Probab=95.66 E-value=0.19 Score=43.90 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=72.0
Q ss_pred EEEECCCCCEEEEEecCCCCCCcceeeeeeC--ChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCcceEEEEe
Q 018011 209 AFIEDPDGYKFELLERGPTPEPLCQVMLRVG--DLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDKNVVLELT 286 (362)
Q Consensus 209 ~~~~DPdG~~~el~~~~~~~~~i~~v~l~v~--D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~l~ 286 (362)
+|-.+|.=-+|.+-+-. -...+-.+++.|. |.+.+++||+-+|+-+...... + +.+.-+-. .. +..++|.
T Consensus 108 fysl~~~~PlWavr~VH-~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~--~--FC~F~lys-~~--~~~iQls 179 (236)
T PF15067_consen 108 FYSLDPGMPLWAVRQVH-YGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE--D--FCFFTLYS-QP--GLDIQLS 179 (236)
T ss_pred ceecCCCCceeEEeeee-ccccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC--C--cEEEEEec-CC--CeEEEEE
Confidence 34445544444444221 1245778999998 9999999999999988754432 1 33333322 22 4555554
Q ss_pred ecCCcc-cccCCCceeEEEEEeCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEE
Q 018011 287 YNYGVT-DYDKGNAYAQIAIGTDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVF 351 (362)
Q Consensus 287 ~~~~~~-~~~~g~g~~hiaf~v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel 351 (362)
...-.. -...+.....+.|.|+|+-+++.-|-.- + .|.+.+ ..-..|||||.|-+
T Consensus 180 LK~lp~~~~p~p~esavLqF~V~~igqLvpLLPnp---c------~PIS~~-rWqT~D~DGNkILL 235 (236)
T PF15067_consen 180 LKQLPPGMSPEPTESAVLQFRVEDIGQLVPLLPNP---C------SPISET-RWQTEDYDGNKILL 235 (236)
T ss_pred eccCCCCCCcccccceEEEEEecchhhhcccCCCC---c------ccccCC-cceeeCCCCCEecc
Confidence 421111 1123345677899999988776443211 1 123222 35679999999853
No 189
>PF15067 FAM124: FAM124 family
Probab=94.79 E-value=0.31 Score=42.63 Aligned_cols=106 Identities=17% Similarity=0.216 Sum_probs=61.0
Q ss_pred eeeEEEEEeC--CHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEe
Q 018011 100 RMLHVVYRVG--DLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (362)
Q Consensus 100 ~l~hV~l~v~--d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V 177 (362)
-|--++|.|+ |++.+++||+-+|+-+...+.. ++ .+|.-+...+-.+.+.+-.-.......+- .-.-+.|+|
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~F-C~F~lys~~~~~iQlsLK~lp~~~~p~p~-esavLqF~V 201 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----DF-CFFTLYSQPGLDIQLSLKQLPPGMSPEPT-ESAVLQFRV 201 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----Cc-EEEEEecCCCeEEEEEeccCCCCCCcccc-cceEEEEEe
Confidence 4667889999 9999999999999988765543 22 23444444433333333221111111111 222478999
Q ss_pred CCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEE
Q 018011 178 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFEL 221 (362)
Q Consensus 178 ~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el 221 (362)
.|+.+++-.|-.--.+++ ..++ -..|||||.|=|
T Consensus 202 ~~igqLvpLLPnpc~PIS---------~~rW-qT~D~DGNkILL 235 (236)
T PF15067_consen 202 EDIGQLVPLLPNPCSPIS---------ETRW-QTEDYDGNKILL 235 (236)
T ss_pred cchhhhcccCCCCccccc---------CCcc-eeeCCCCCEecc
Confidence 999887764422222221 1221 358999998743
No 190
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=92.18 E-value=0.11 Score=39.40 Aligned_cols=91 Identities=15% Similarity=0.221 Sum_probs=40.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEeC-
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVD- 178 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V~- 178 (362)
.+..++|+|+| +++.+||+++||-... ..+.+....+.. +.+ ++ ...=++.-+-|.|+
T Consensus 5 ~~e~i~LNV~d-~~~~~fy~~~f~~~~~---------~~l~f~ea~G~D--L~~--------~~-~~twDLe~Lkf~V~~ 63 (101)
T PF14507_consen 5 EFESIELNVPD-AKSQSFYQSIFGGQLP---------FFLTFQEAQGPD--LTI--------EN-NETWDLEMLKFQVPK 63 (101)
T ss_dssp EE-EEEEEE-T--T---S--H---HHHT---------TTEEEEE---CC--GSS---------T-TSBSSEEEEEEEES-
T ss_pred EEEEEEEeCCC-hhHHHHHHhccccCCC---------ceEEEeeccCCc--ccc--------CC-CcEEeeEEEEEEecC
Confidence 36678999999 8899999998862110 012222211110 000 00 00115667889999
Q ss_pred --CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEE
Q 018011 179 --DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKF 219 (362)
Q Consensus 179 --Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~ 219 (362)
|+.++.+++.+.+.= .+ ...+++.+.||.|+-+
T Consensus 64 ~~Dl~~L~~~le~~~~f-------id-Kk~k~l~~~Dps~IEl 98 (101)
T PF14507_consen 64 DFDLAALKSHLEEQEFF-------ID-KKEKFLVTSDPSQIEL 98 (101)
T ss_dssp S--HHHHHHHTTTS-EE----------TT-SEEEEE-TTS-EE
T ss_pred cccHHHHHHHhcccceE-------ec-CCceEEEEECCcceEE
Confidence 588888888884432 22 2466788899998754
No 191
>PRK11700 hypothetical protein; Provisional
Probab=86.80 E-value=11 Score=32.11 Aligned_cols=79 Identities=18% Similarity=0.104 Sum_probs=46.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCE-EEEEecCCCCceeEEEEeec---CCCceEEEEEeecCCCCCCcCCCCeEEEE
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMK-LLRKRDIPEEKYTNAFLGYG---PEDSHFVIELTYNYGVDKYDIGTGFGHFG 174 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~-~~~~~~~~~~~~~~~~l~~g---~~~~~~~l~l~~~~~~~~~~~g~~~~hia 174 (362)
..++||.++|.+.+.+.+|.+..+-.- +.......+.-...+-+... ....--.+||.++.. +..+-.|..||-
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~--k~Yp~eGWEHIE 115 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE--KRYPHEGWEHIE 115 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceEEE
Confidence 468999999999999999998866432 22222222221222222111 112223567776433 333456999999
Q ss_pred EEeCC
Q 018011 175 IAVDD 179 (362)
Q Consensus 175 f~V~D 179 (362)
+.++.
T Consensus 116 lVlp~ 120 (187)
T PRK11700 116 LVLPG 120 (187)
T ss_pred EEecC
Confidence 99984
No 192
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=83.80 E-value=19 Score=28.19 Aligned_cols=121 Identities=15% Similarity=0.231 Sum_probs=69.4
Q ss_pred EEEEEeCC----HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecCCCCCCcceeeeeeCChHHHHHH
Q 018011 172 HFGIAVDD----VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRSINF 247 (362)
Q Consensus 172 hiaf~V~D----ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~~~~~~i~~v~l~v~D~~~a~~F 247 (362)
.+.+-++| +..+...|.++|+.+. .+.+.|. +.++-+.+.|.+++.+.+-
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiR------------A~tiAdt--------------~dFGIiRmvV~~~d~A~~~ 58 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIR------------AFTIADT--------------GDFGIIRMVVDRPDEAHSV 58 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceE------------EEEeccc--------------cCcceEEEEcCChHHHHHH
Confidence 35666665 7888889999997653 2333333 3456677888999999888
Q ss_pred HHHhhCCeeeeee------cCCCCceEEEEeccCCCCcceEEEEeecCCcccccCCCceeEEEEEeCCHHHHHHHHHHcC
Q 018011 248 YEQAFGMELLRKR------DNPEYKYTIAMMGYGPEDKNVVLELTYNYGVTDYDKGNAYAQIAIGTDDVYKTAEAIKLFG 321 (362)
Q Consensus 248 Y~~~LG~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~l~l~~~~~~~~~~~g~g~~hiaf~v~Did~~~~~l~~~G 321 (362)
.++ -||.+.... ++..++..-+.--.+ +.+.-++..|.. -.-..-..+.+.|+|+|++.+.|+++|
T Consensus 59 Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~--d~diNldYiYAF-----v~ek~KAlli~r~ed~d~~~~aLed~g 130 (142)
T COG4747 59 LEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLG--DADINLDYIYAF-----VTEKQKALLIVRVEDIDRAIKALEDAG 130 (142)
T ss_pred HHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHh--hcCcCceeeeee-----eecCceEEEEEEhhHHHHHHHHHHHcC
Confidence 866 688765321 111111000000000 011111111111 011123567889999999999999999
Q ss_pred Ceeec
Q 018011 322 GKVTR 326 (362)
Q Consensus 322 ~~v~~ 326 (362)
+.++.
T Consensus 131 i~~~~ 135 (142)
T COG4747 131 IKLIG 135 (142)
T ss_pred CeecC
Confidence 99774
No 193
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=83.53 E-value=19 Score=29.41 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=44.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCE-EEEEecCCCCceeEEEEeec---CCCceEEEEEeecCCCCCCcCCCCeEEEEEE
Q 018011 101 MLHVVYRVGDLDRTIKFYTECLGMK-LLRKRDIPEEKYTNAFLGYG---PEDSHFVIELTYNYGVDKYDIGTGFGHFGIA 176 (362)
Q Consensus 101 l~hV~l~v~d~~~a~~FY~~vLG~~-~~~~~~~~~~~~~~~~l~~g---~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~ 176 (362)
++||.++|.+.+.+.+|.+..+-.- +.......+.-...+-+... ....--.+||.++.. +..+-.|..|+-+-
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~--k~Yp~eGWEHIE~V 79 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKD--KKYPQEGWEHIEIV 79 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC--CCCCCCCceEEEEE
Confidence 6899999999999999998876442 22222222221122222110 112223567766433 22345699999999
Q ss_pred eCC
Q 018011 177 VDD 179 (362)
Q Consensus 177 V~D 179 (362)
++.
T Consensus 80 lp~ 82 (149)
T cd07268 80 IPS 82 (149)
T ss_pred ecC
Confidence 984
No 194
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=81.78 E-value=14 Score=31.54 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=44.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCE-EEEEecCCCCceeEEEEe----ecCCCceEEEEEeecCCCCCCcCCCCeEEE
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGMK-LLRKRDIPEEKYTNAFLG----YGPEDSHFVIELTYNYGVDKYDIGTGFGHF 173 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~~-~~~~~~~~~~~~~~~~l~----~g~~~~~~~l~l~~~~~~~~~~~g~~~~hi 173 (362)
..++||.++|++.+.+.+|-+..+-.- +....-..+.....+-+. .+ ...--.+||..+.. +..+-.|..|+
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~-~~~I~~vELP~P~~--K~Yp~eGWEHI 109 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFG-GWSIDCVELPYPKD--KRYPQEGWEHI 109 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEET-TEEEEEEEEE---S--S--SS-EEEEE
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcC-CeeEEEEEeCCCCC--CCCCCCCceEE
Confidence 568999999999999999999988663 333333333222222221 12 22223567776544 22244599999
Q ss_pred EEEeCC-HHHHHHH
Q 018011 174 GIAVDD-VAKTVEL 186 (362)
Q Consensus 174 af~V~D-ld~~~~~ 186 (362)
-|-++. .+...++
T Consensus 110 E~Vip~~~~~~~~~ 123 (185)
T PF06185_consen 110 EFVIPSDAQTLLEQ 123 (185)
T ss_dssp EEE--S-GGGHHHH
T ss_pred EEEecCCHHHHHHH
Confidence 999984 3334434
No 195
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.09 E-value=38 Score=27.55 Aligned_cols=103 Identities=17% Similarity=0.360 Sum_probs=57.3
Q ss_pred EEeCCHHHHHHHHHHhcCCE-EE--EEecC--C---CCceeEEEEeecCCCceEEEEEeecCCCCCCcCCCCeEEEEEEe
Q 018011 106 YRVGDLDRTIKFYTECLGMK-LL--RKRDI--P---EEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAV 177 (362)
Q Consensus 106 l~v~d~~~a~~FY~~vLG~~-~~--~~~~~--~---~~~~~~~~l~~g~~~~~~~l~l~~~~~~~~~~~g~~~~hiaf~V 177 (362)
+.-.+.+++.+||.++|-=. +. .+.+. + .+.+..+.+..++.. .+.+.. .+...+.....+ .+-+.+
T Consensus 11 ~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~---f~~ld~-g~~~~f~fneA~-S~~v~~ 85 (151)
T COG3865 11 WFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQS---FMALDG-GPNTSFKFNEAF-SFQVAC 85 (151)
T ss_pred EECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeE---EEEEcC-CCCcCCCcCccE-EEEEEc
Confidence 34489999999999998543 22 11111 1 123444445544321 122222 111112222222 134455
Q ss_pred CC---HHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEec
Q 018011 178 DD---VAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLER 224 (362)
Q Consensus 178 ~D---ld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~ 224 (362)
+| +|.+...|.+.|.. .....|++|-.|.-|.|+.+
T Consensus 86 ~~q~E~Drlwnal~~~g~e-----------~~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 86 DDQEEIDRLWNALSDNGGE-----------AEACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred CCHHHHHHHHHHHhccCcc-----------hhcceeEecccCcEEEEcHH
Confidence 55 77788888888862 23456899999999999844
No 196
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.19 E-value=49 Score=26.95 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcc
Q 018011 309 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDN 354 (362)
Q Consensus 309 Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~ 354 (362)
.+|+.+.+|.+.|.+- ....+++|-.|..|.|+-+
T Consensus 90 E~Drlwnal~~~g~e~-----------~~cgW~kDKfGVSWQi~p~ 124 (151)
T COG3865 90 EIDRLWNALSDNGGEA-----------EACGWLKDKFGVSWQIVPR 124 (151)
T ss_pred HHHHHHHHHhccCcch-----------hcceeEecccCcEEEEcHH
Confidence 4788899999988731 3578999999999999753
No 197
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=67.99 E-value=60 Score=27.34 Aligned_cols=79 Identities=16% Similarity=0.313 Sum_probs=48.7
Q ss_pred EEEEeCCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCC------EEEE---------EecCCCC-CCc---ce
Q 018011 173 FGIAVDDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGY------KFEL---------LERGPTP-EPL---CQ 233 (362)
Q Consensus 173 iaf~V~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~------~~el---------~~~~~~~-~~i---~~ 233 (362)
+=+.+.|.+++.++|++.|+.....- ...-.||..|++- .+.+ .-.+|.. ..+ ..
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~~~------~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E 79 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIKKE------FQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKE 79 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCccccccc------ceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEE
Confidence 34778899999999999997654221 1223455555421 1222 2222211 111 23
Q ss_pred eeeeeCChHHHHHHHHHhhCCeeee
Q 018011 234 VMLRVGDLDRSINFYEQAFGMELLR 258 (362)
Q Consensus 234 v~l~v~D~~~a~~FY~~~LG~~~~~ 258 (362)
+.+.|.|.+++.+.+. .||+++..
T Consensus 80 ~e~~v~d~~~~~~iL~-~LG~~~~~ 103 (174)
T TIGR00318 80 IEFKIEDIENALQILK-KLGFKKVY 103 (174)
T ss_pred EEEEECCHHHHHHHHH-HCCCeEEE
Confidence 6778899999999996 69999743
No 198
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=61.68 E-value=18 Score=26.26 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccc
Q 018011 309 DVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNV 355 (362)
Q Consensus 309 Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~ 355 (362)
...++.+.+++.|+++..--... . +.+.+...|.||+.+|+.=++
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~-~-g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDD-D-GCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcC-C-CEEEEEEEECCCCEEEEEEcC
Confidence 67899999999999765432212 2 136778999999999986444
No 199
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.13 E-value=22 Score=24.52 Aligned_cols=29 Identities=10% Similarity=0.009 Sum_probs=22.4
Q ss_pred ceeEEEEEe--CCHHHHHHHHHHcCCeeecC
Q 018011 299 AYAQIAIGT--DDVYKTAEAIKLFGGKVTRE 327 (362)
Q Consensus 299 g~~hiaf~v--~Did~~~~~l~~~G~~v~~~ 327 (362)
+...+.|.+ .|.+++.+.|+++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 344455655 48889999999999999875
No 200
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.07 E-value=20 Score=24.08 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.9
Q ss_pred CceeEEEEEeCCHHHHHHHHHHcCCeee
Q 018011 298 NAYAQIAIGTDDVYKTAEAIKLFGGKVT 325 (362)
Q Consensus 298 ~g~~hiaf~v~Did~~~~~l~~~G~~v~ 325 (362)
.+...+.|.+++.+.+.+.|+++|++++
T Consensus 38 ~~~~~v~~~ve~~~~~~~~L~~~G~~v~ 65 (65)
T cd04882 38 GGKALLIFRTEDIEKAIEVLQERGVELV 65 (65)
T ss_pred CCeEEEEEEeCCHHHHHHHHHHCCceEC
Confidence 3567789999999999999999999763
No 201
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=56.35 E-value=62 Score=23.39 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHcCCeeecCCeeccCCCEEEEEEECCCCCEEEEEecC
Q 018011 179 DVAKTVELIKAKGGKVTREPGPVKGGNTVIAFIEDPDGYKFELLERG 225 (362)
Q Consensus 179 Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~~DPdG~~~el~~~~ 225 (362)
+.+++.+.|++.|..+.. .+.+.++.+-+...|.+|..+|+.-+.
T Consensus 30 ~~~~~~~~l~~~G~~v~~--ve~~~~g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVRE--VEFDDDGCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEE--EEEcCCCEEEEEEEECCCCEEEEEEcC
Confidence 688999999999996542 233233356677899999999998663
No 202
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.10 E-value=37 Score=23.31 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=22.2
Q ss_pred CeEEEEEEeC--CHHHHHHHHHHcCCeeecC
Q 018011 169 GFGHFGIAVD--DVAKTVELIKAKGGKVTRE 197 (362)
Q Consensus 169 ~~~hiaf~V~--Dld~~~~~l~~~G~~~~~~ 197 (362)
+...+.|+++ |.+.+.+.|+++|+++.|+
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 3334556664 7889999999999999875
No 203
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=51.52 E-value=34 Score=31.72 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=23.3
Q ss_pred CCCCeEEEEEEe------CCHHHHHHHHHHcCCeee
Q 018011 166 IGTGFGHFGIAV------DDVAKTVELIKAKGGKVT 195 (362)
Q Consensus 166 ~g~~~~hiaf~V------~Dld~~~~~l~~~G~~~~ 195 (362)
.|..+||+..+| .|++++.+.|+++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 467899999999 999999999999999876
No 204
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=46.54 E-value=83 Score=24.74 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=48.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecCCC-ce-------EEEEEeecCCCCCCcCCCCeE
Q 018011 100 RMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED-SH-------FVIELTYNYGVDKYDIGTGFG 171 (362)
Q Consensus 100 ~l~hV~l~v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~-~~-------~~l~l~~~~~~~~~~~g~~~~ 171 (362)
-++-+-+.|++++.+.+-+++ -||.+....- ....+.--+++ +. .-+.+.+-+. +..-..-.
T Consensus 41 dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dV------laVEmeD~PG~l~~I~~vl~d~diNldYiYA---Fv~ek~KA 110 (142)
T COG4747 41 DFGIIRMVVDRPDEAHSVLEE-AGFTVRETDV------LAVEMEDVPGGLSRIAEVLGDADINLDYIYA---FVTEKQKA 110 (142)
T ss_pred CcceEEEEcCChHHHHHHHHH-CCcEEEeeeE------EEEEecCCCCcHHHHHHHHhhcCcCceeeee---eeecCceE
Confidence 355667899999999999998 8998765321 00111000000 00 0011111000 00000111
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeeec
Q 018011 172 HFGIAVDDVAKTVELIKAKGGKVTR 196 (362)
Q Consensus 172 hiaf~V~Dld~~~~~l~~~G~~~~~ 196 (362)
-+-++|+|+|++.+.|+++|++...
T Consensus 111 lli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEEhhHHHHHHHHHHHcCCeecC
Confidence 2678999999999999999999864
No 205
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.68 E-value=51 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=22.4
Q ss_pred CeEEEEEEeCCHHHHHHHHHHcCCee
Q 018011 169 GFGHFGIAVDDVAKTVELIKAKGGKV 194 (362)
Q Consensus 169 ~~~hiaf~V~Dld~~~~~l~~~G~~~ 194 (362)
+...+.|++++.+.+.+.|+++|.++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45668899999999999999999865
No 206
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=42.77 E-value=1.3e+02 Score=25.75 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=37.4
Q ss_pred CcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCc-eEEEEec----cCCCCcceEEEEeecCCcccccCCCceeEEE
Q 018011 230 PLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK-YTIAMMG----YGPEDKNVVLELTYNYGVTDYDKGNAYAQIA 304 (362)
Q Consensus 230 ~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~-~~~~~l~----~~~~~~~~~l~l~~~~~~~~~~~g~g~~hia 304 (362)
.++||.++|.+.+.|.+|-+..+-.-..-....-.|+ ..++-+. .++. .-..+||.+..+ ....-.|.-||-
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~-~I~~vELP~P~~--K~Yp~eGWEHIE 110 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGW-SIDCVELPYPKD--KRYPQEGWEHIE 110 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTE-EEEEEEEE---S--S--SS-EEEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCe-eEEEEEeCCCCC--CCCCCCCceEEE
Confidence 5799999999999999999988865433221111222 2222221 1110 124456655332 122335788999
Q ss_pred EEeC
Q 018011 305 IGTD 308 (362)
Q Consensus 305 f~v~ 308 (362)
|.++
T Consensus 111 ~Vip 114 (185)
T PF06185_consen 111 FVIP 114 (185)
T ss_dssp EE--
T ss_pred EEec
Confidence 9875
No 207
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.14 E-value=55 Score=28.68 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=26.3
Q ss_pred eCChHHHHHHHHHhhCCeeeeeecCCCCceEEEEeccCCCCc
Q 018011 238 VGDLDRSINFYEQAFGMELLRKRDNPEYKYTIAMMGYGPEDK 279 (362)
Q Consensus 238 v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (362)
..|+.+++.||.+.||+++... .+....++|-...+.+.
T Consensus 144 sa~~~e~a~wy~dyLGleie~~---hgevikfiFTnIdpkdp 182 (246)
T KOG4657|consen 144 SADIHEAASWYNDYLGLEIEAG---HGEVIKFIFTNIDPKDP 182 (246)
T ss_pred hhccHHHHHHHHHhcCceeeec---cCceEEEEEeccCCCCC
Confidence 3578899999999999998533 22235556655555443
No 208
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.37 E-value=1.4e+02 Score=25.01 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=45.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCC--EEEEEecCCCCceeEEEEeecCC-----CceEEEEEeecCCCCCCcCCCCeE
Q 018011 99 RRMLHVVYRVGDLDRTIKFYTECLGM--KLLRKRDIPEEKYTNAFLGYGPE-----DSHFVIELTYNYGVDKYDIGTGFG 171 (362)
Q Consensus 99 ~~l~hV~l~v~d~~~a~~FY~~vLG~--~~~~~~~~~~~~~~~~~l~~g~~-----~~~~~l~l~~~~~~~~~~~g~~~~ 171 (362)
..++|+.|+|.+.+-++.|-.-.+-. .+++.. ..+ + -...+..... ..--.++|..+.. +.-+-.|..
T Consensus 38 ~~~DHIaLRvh~~qtAk~wr~~~lqcG~~lS~n~-iNG-R-pI~li~l~~Pl~v~~w~id~iELP~P~~--K~YP~egWE 112 (185)
T COG3102 38 YTADHIALRVHQEQTAKRWRRGLLQCGELLSENL-ING-R-PICLIKLHQPLQVAHWQIDIIELPYPKN--KRYPHEGWE 112 (185)
T ss_pred cccceeEEEeCcHHHHHHHHHHHHHHHHHhhhhh-cCC-c-eEEEEEcCCcceecceEEEEEEccCCcC--CCCCCcCce
Confidence 46899999999999888876654422 222211 111 1 1122222110 1111456655333 333445999
Q ss_pred EEEEEeC-CHHHHHHHHH
Q 018011 172 HFGIAVD-DVAKTVELIK 188 (362)
Q Consensus 172 hiaf~V~-Dld~~~~~l~ 188 (362)
||-|..+ +.+++.++..
T Consensus 113 HIEiVlP~~peel~~~~~ 130 (185)
T COG3102 113 HIEIVLPGDPEELNARAL 130 (185)
T ss_pred eEEEEcCCChHHHHHHHH
Confidence 9999999 4555555443
No 209
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.78 E-value=1.9e+02 Score=20.50 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=31.3
Q ss_pred EEEEeCC----HHHHHHHHHHcCCeeecCCeeccC-CCEEEEEEECCCCCEE
Q 018011 173 FGIAVDD----VAKTVELIKAKGGKVTREPGPVKG-GNTVIAFIEDPDGYKF 219 (362)
Q Consensus 173 iaf~V~D----ld~~~~~l~~~G~~~~~~p~~~~~-g~~~~~~~~DPdG~~~ 219 (362)
+-+...| +-.+.+-|.+.|+.+........+ .....+|+.|.+|..+
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 3444555 677888999999987654322222 2345789999998865
No 210
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=30.95 E-value=28 Score=22.15 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=19.2
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhC
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFG 253 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG 253 (362)
++++...+.+.+.++..+||...|-
T Consensus 10 gp~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 10 GPVDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred CccccCCCccccccchhHHHHHHHH
Confidence 3456666777888999999998763
No 211
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.61 E-value=96 Score=22.47 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=23.2
Q ss_pred ceeEEEEEeCC----HHHHHHHHHHcCCeeec
Q 018011 299 AYAQIAIGTDD----VYKTAEAIKLFGGKVTR 326 (362)
Q Consensus 299 g~~hiaf~v~D----id~~~~~l~~~G~~v~~ 326 (362)
+...+.++++| ++++.+.|+++|+++..
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 44567788888 89999999999999764
No 212
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=29.47 E-value=58 Score=25.56 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.7
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCeee
Q 018011 301 AQIAIGTDDVYKTAEAIKLFGGKVT 325 (362)
Q Consensus 301 ~hiaf~v~Did~~~~~l~~~G~~v~ 325 (362)
.|+-..-+|++++++.|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 5677777899999999999999864
No 213
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.65 E-value=1.7e+02 Score=20.95 Aligned_cols=41 Identities=10% Similarity=-0.033 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCeeecCCcccCC-CCceEEEEECCCCCeEE
Q 018011 310 VYKTAEAIKLFGGKVTREPGPLPG-INTKITACLDPDGWKTV 350 (362)
Q Consensus 310 id~~~~~l~~~G~~v~~~p~~~~~-~~~~~~~~~DPdG~~ie 350 (362)
+.++...|.+.|+.+....-...+ ..-.++|++|.+|..+.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 567788999999987754322222 11257899999999874
No 214
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=27.41 E-value=2.4e+02 Score=21.50 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHcCCeeecCCeeccCCCEEEEEE--ECCCCCE--EEEEecCCCCCCcceeeeeeCChHHHHHHHH
Q 018011 178 DDVAKTVELIKAKGGKVTREPGPVKGGNTVIAFI--EDPDGYK--FELLERGPTPEPLCQVMLRVGDLDRSINFYE 249 (362)
Q Consensus 178 ~Dld~~~~~l~~~G~~~~~~p~~~~~g~~~~~~~--~DPdG~~--~el~~~~~~~~~i~~v~l~v~D~~~a~~FY~ 249 (362)
.+.+.+.++|+++++-..-. +..++ ....+|+ .+..|.. +|+.-.. ..+-..+++.+.+.+-+..|++
T Consensus 36 ~~~~~i~~~L~~~nI~~iA~-~~~~~-~~~~~y~s~~~~~~~~fL~El~~~~--~~~~~~v~vK~~~~~~~~~f~~ 107 (114)
T PF09066_consen 36 PSPDAIEEKLQANNIFTIAS-GKVDN-GQKFFYFSAKTTNGIWFLVELTIDP--GSPSVKVTVKSENPEMAPLFLQ 107 (114)
T ss_dssp --HHHHHHHHHCTT-EEEEE-EECTT--EEEEEEEEEBTTS-EEEEEEEE-T--T-SSEEEEEEESSCCCHHHHHH
T ss_pred CcHHHHHHHHHHCCEEEEec-CCCCc-cccEEEEEEEcCCCcEEEEEEEEcC--CCccEEEEEecCCHHHHHHHHH
Confidence 47999999999999976532 33333 2444444 4666654 4555432 2346688899988876666664
No 215
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.90 E-value=3.7e+02 Score=22.06 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=41.2
Q ss_pred cceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCc-eEEEEeccCCCCc---ceEEEEeecCCcccccCCCceeEEEEE
Q 018011 231 LCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK-YTIAMMGYGPEDK---NVVLELTYNYGVTDYDKGNAYAQIAIG 306 (362)
Q Consensus 231 i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~-~~~~~l~~~~~~~---~~~l~l~~~~~~~~~~~g~g~~hiaf~ 306 (362)
++|+.++|.+.+.|.+|.+..+-.-..-....-.|+ ..++.+.-.-.-. -..+||.+... ..| .-.|.-||-+.
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~~-k~Y-p~eGWEHIE~V 79 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPKD-KKY-PQEGWEHIEIV 79 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CCC-CCCCceEEEEE
Confidence 689999999999999999887754322111111222 2222222110001 23456655322 222 33577899888
Q ss_pred eC
Q 018011 307 TD 308 (362)
Q Consensus 307 v~ 308 (362)
++
T Consensus 80 lp 81 (149)
T cd07268 80 IP 81 (149)
T ss_pred ec
Confidence 75
No 216
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.72 E-value=2.2e+02 Score=25.05 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=23.8
Q ss_pred eCCHHHHHHHHHHhcCCEEEEEecCCCCceeEEEEeecC
Q 018011 108 VGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGP 146 (362)
Q Consensus 108 v~d~~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~ 146 (362)
..|..+++.||.+.||+++..-.+ ......|....+
T Consensus 144 sa~~~e~a~wy~dyLGleie~~hg---evikfiFTnIdp 179 (246)
T KOG4657|consen 144 SADIHEAASWYNDYLGLEIEAGHG---EVIKFIFTNIDP 179 (246)
T ss_pred hhccHHHHHHHHHhcCceeeeccC---ceEEEEEeccCC
Confidence 347788899999999999865332 223445555444
No 217
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=25.05 E-value=26 Score=20.72 Aligned_cols=23 Identities=30% Similarity=0.751 Sum_probs=16.8
Q ss_pred eeeeeeCChHHHHHHHHHhhCCe
Q 018011 233 QVMLRVGDLDRSINFYEQAFGME 255 (362)
Q Consensus 233 ~v~l~v~D~~~a~~FY~~~LG~~ 255 (362)
.+.....|.++|+++|++.|.+.
T Consensus 7 ~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 7 RIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 34455689999999999988554
No 218
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.47 E-value=1.2e+02 Score=20.50 Aligned_cols=24 Identities=29% Similarity=0.196 Sum_probs=19.1
Q ss_pred EEEEEeCCHHHHHHHHHHcCCeee
Q 018011 302 QIAIGTDDVYKTAEAIKLFGGKVT 325 (362)
Q Consensus 302 hiaf~v~Did~~~~~l~~~G~~v~ 325 (362)
.+-+.++|.+++.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 344556888899999999999864
No 219
>PRK11700 hypothetical protein; Provisional
Probab=22.88 E-value=4.9e+02 Score=22.31 Aligned_cols=78 Identities=9% Similarity=0.011 Sum_probs=42.1
Q ss_pred CCcceeeeeeCChHHHHHHHHHhhCCeeeeeecCCCCc-eEEEEeccCCCC---cceEEEEeecCCcccccCCCceeEEE
Q 018011 229 EPLCQVMLRVGDLDRSINFYEQAFGMELLRKRDNPEYK-YTIAMMGYGPED---KNVVLELTYNYGVTDYDKGNAYAQIA 304 (362)
Q Consensus 229 ~~i~~v~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~l~l~~~~~~~~~~~g~g~~hia 304 (362)
-.++||.++|.+.+.|.+|.+..+-.-..-....-.|+ ..++.+.-.-.- .-..+||.+... +. ..-.|.-||-
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~-k~-Yp~eGWEHIE 115 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE-KR-YPHEGWEHIE 115 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC-CC-CCCCCceEEE
Confidence 35899999999999999999887744322111111222 222222211001 123456655322 22 2335778898
Q ss_pred EEeC
Q 018011 305 IGTD 308 (362)
Q Consensus 305 f~v~ 308 (362)
+.++
T Consensus 116 lVlp 119 (187)
T PRK11700 116 LVLP 119 (187)
T ss_pred EEec
Confidence 8875
No 220
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=22.09 E-value=1.3e+02 Score=20.09 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=22.6
Q ss_pred eCCHHHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEcccc
Q 018011 307 TDDVYKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVD 356 (362)
Q Consensus 307 v~Did~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~ 356 (362)
+-++++.-++-..+|-.+... .. .-.+-..+|||..+-|++..+
T Consensus 3 ~~~ls~~ea~~l~~Gr~l~~~-----~~-~g~~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 3 VRELSAEEARDLRHGRRLPAA-----GP-PGPVAAFAPDGRLVALLEERG 46 (56)
T ss_dssp EEE--HHHHHHHHTT---B-----------S-EEEE-TTS-EEEEEEEET
T ss_pred ceECCHHHHHHHhCCCccCCC-----CC-CceEEEECCCCcEEEEEEccC
Confidence 335566667777788776533 11 224668899999999997653
No 221
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=21.49 E-value=1.3e+02 Score=29.95 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCeeecC-CcccCCCCceEEEEECCCCCeEEE
Q 018011 312 KTAEAIKLFGGKVTRE-PGPLPGINTKITACLDPDGWKTVF 351 (362)
Q Consensus 312 ~~~~~l~~~G~~v~~~-p~~~~~~~~~~~~~~DPdG~~iel 351 (362)
++...|.++|++++.- .....| |++..++|+||+..|-
T Consensus 14 ~~a~~La~~g~~vt~~ea~~~~G--Gk~~s~~~~dg~~~E~ 52 (485)
T COG3349 14 AAAYELADAGYDVTLYEARDRLG--GKVASWRDSDGNHVEH 52 (485)
T ss_pred HHHHHHHhCCCceEEEeccCccC--ceeeeeecCCCCeeee
Confidence 4566788999875432 233344 7999999999999884
No 222
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=20.67 E-value=1.1e+02 Score=28.35 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=23.2
Q ss_pred CCCceeEEEEEe------CCHHHHHHHHHHcCCeee
Q 018011 296 KGNAYAQIAIGT------DDVYKTAEAIKLFGGKVT 325 (362)
Q Consensus 296 ~g~g~~hiaf~v------~Did~~~~~l~~~G~~v~ 325 (362)
.|..+.|+...| .||+++.+.|+++|++..
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 577899999999 999999999999999876
No 223
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=20.25 E-value=1.8e+02 Score=22.28 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCeeecCCcccCCCCceEEEEECCCCCeEEEEccccc
Q 018011 311 YKTAEAIKLFGGKVTREPGPLPGINTKITACLDPDGWKTVFVDNVDF 357 (362)
Q Consensus 311 d~~~~~l~~~G~~v~~~p~~~~~~~~~~~~~~DPdG~~iel~~~~~~ 357 (362)
.++++.|+++|++ ....|+.+|....+..++..|+
T Consensus 27 PE~~a~lk~agi~------------nYSIfLde~~n~lFgy~E~~d~ 61 (105)
T COG3254 27 PELLALLKEAGIR------------NYSIFLDEEENLLFGYWEYEDF 61 (105)
T ss_pred HHHHHHHHHcCCc------------eeEEEecCCcccEEEEEEEcCh
Confidence 4677888888887 5678888888888888876644
No 224
>PHA00404 hypothetical protein
Probab=20.23 E-value=61 Score=19.76 Aligned_cols=17 Identities=47% Similarity=0.491 Sum_probs=9.9
Q ss_pred cccccccccccccccCCC
Q 018011 7 MASSIRPSLSTFRFSSSS 24 (362)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (362)
|+.-|+| ||+.+..+|+
T Consensus 1 m~t~irp-ls~slrk~ss 17 (42)
T PHA00404 1 MVTPIRP-LSPSLRKRSS 17 (42)
T ss_pred CCccccc-CChhhcccCC
Confidence 5567788 5555444443
Done!