Query 018012
Match_columns 362
No_of_seqs 256 out of 2106
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:22:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1441 Glucose-6-phosphate/ph 100.0 3.8E-38 8.2E-43 299.3 12.0 243 106-354 14-314 (316)
2 PTZ00343 triose or hexose phos 100.0 9.3E-36 2E-40 290.9 25.9 244 105-349 45-350 (350)
3 TIGR00817 tpt Tpt phosphate/ph 100.0 1.2E-34 2.6E-39 277.5 19.7 244 108-351 1-297 (302)
4 KOG1443 Predicted integral mem 99.9 3E-25 6.5E-30 204.9 16.2 238 108-347 15-315 (349)
5 KOG2765 Predicted membrane pro 99.9 3.2E-25 6.9E-30 209.8 15.6 226 105-351 157-394 (416)
6 KOG1444 Nucleotide-sugar trans 99.9 3.4E-25 7.4E-30 207.0 15.5 235 115-354 18-307 (314)
7 PF06027 DUF914: Eukaryotic pr 99.9 6.3E-23 1.4E-27 197.5 17.5 225 105-352 77-310 (334)
8 PF08449 UAA: UAA transporter 99.9 8.9E-22 1.9E-26 188.8 23.3 209 140-352 82-302 (303)
9 KOG1442 GDP-fucose transporter 99.9 8.7E-25 1.9E-29 198.9 2.2 214 140-359 120-339 (347)
10 PLN00411 nodulin MtN21 family 99.9 9E-21 2E-25 185.4 19.8 208 140-354 96-335 (358)
11 COG5070 VRG4 Nucleotide-sugar 99.9 2.7E-21 5.8E-26 171.6 10.9 232 115-353 12-302 (309)
12 TIGR00950 2A78 Carboxylate/Ami 99.8 9.3E-19 2E-23 163.3 22.3 191 140-342 65-259 (260)
13 PRK11689 aromatic amino acid e 99.8 1.8E-18 4E-23 165.2 23.5 191 144-348 87-288 (295)
14 PRK11453 O-acetylserine/cystei 99.8 4.7E-18 1E-22 162.7 23.0 205 141-350 78-290 (299)
15 PF03151 TPT: Triose-phosphate 99.8 1.6E-18 3.4E-23 149.2 16.9 145 203-347 1-153 (153)
16 PRK11272 putative DMT superfam 99.8 1.2E-17 2.7E-22 159.2 21.8 198 140-349 87-287 (292)
17 PRK15430 putative chlorampheni 99.8 6.8E-17 1.5E-21 154.5 20.2 196 140-350 91-288 (296)
18 PRK10532 threonine and homoser 99.7 2.9E-16 6.2E-21 149.9 22.4 193 140-351 89-285 (293)
19 TIGR03340 phn_DUF6 phosphonate 99.7 1.1E-16 2.3E-21 151.9 13.9 194 140-344 81-280 (281)
20 COG0697 RhaT Permeases of the 99.7 2.1E-14 4.6E-19 134.8 22.8 195 140-348 88-288 (292)
21 KOG1581 UDP-galactose transpor 99.6 1.4E-14 3E-19 134.6 17.8 205 140-351 101-317 (327)
22 KOG1580 UDP-galactose transpor 99.6 1.2E-15 2.6E-20 136.8 8.3 200 140-346 103-312 (337)
23 KOG4510 Permease of the drug/m 99.6 1.4E-15 3.1E-20 138.6 4.3 199 140-349 115-327 (346)
24 PF04142 Nuc_sug_transp: Nucle 99.5 3.1E-13 6.7E-18 125.7 17.3 209 106-337 16-243 (244)
25 TIGR00776 RhaT RhaT L-rhamnose 99.5 4.6E-13 1E-17 127.8 18.1 191 140-348 77-289 (290)
26 KOG1582 UDP-galactose transpor 99.5 1.7E-13 3.7E-18 125.3 14.0 204 140-349 124-334 (367)
27 KOG1583 UDP-N-acetylglucosamin 99.5 4.7E-14 1E-18 129.3 6.2 210 140-353 82-320 (330)
28 KOG3912 Predicted integral mem 99.4 1.9E-12 4.2E-17 119.0 13.5 210 140-349 104-336 (372)
29 TIGR00688 rarD rarD protein. T 99.4 8.1E-12 1.8E-16 116.7 17.8 168 140-322 88-255 (256)
30 KOG2234 Predicted UDP-galactos 99.3 3.2E-11 7E-16 115.0 16.2 205 140-352 110-327 (345)
31 COG2962 RarD Predicted permeas 99.3 2.5E-10 5.4E-15 106.3 21.2 200 140-354 90-290 (293)
32 KOG2766 Predicted membrane pro 99.3 5.2E-12 1.1E-16 114.8 7.8 199 140-350 96-302 (336)
33 KOG4314 Predicted carbohydrate 99.2 7.3E-11 1.6E-15 103.7 8.4 221 109-351 55-280 (290)
34 TIGR00803 nst UDP-galactose tr 99.2 6.3E-11 1.4E-15 108.6 8.4 189 146-345 2-222 (222)
35 COG5006 rhtA Threonine/homoser 99.1 5.3E-09 1.1E-13 95.4 17.1 190 140-347 89-282 (292)
36 PF00892 EamA: EamA-like trans 99.1 1E-09 2.2E-14 90.0 11.5 124 212-346 1-125 (126)
37 COG2510 Predicted membrane pro 99.0 1.6E-09 3.6E-14 88.9 9.1 135 203-346 4-138 (140)
38 PRK15430 putative chlorampheni 98.9 1.9E-07 4.2E-12 89.3 18.9 141 198-346 4-144 (296)
39 TIGR00688 rarD rarD protein. T 98.9 2.1E-07 4.7E-12 86.9 18.1 140 202-346 2-141 (256)
40 TIGR03340 phn_DUF6 phosphonate 98.7 1E-06 2.2E-11 83.5 16.1 133 204-347 3-135 (281)
41 PLN00411 nodulin MtN21 family 98.5 5E-06 1.1E-10 81.7 17.3 137 202-347 13-156 (358)
42 PF06800 Sugar_transport: Suga 98.4 3.9E-06 8.5E-11 78.7 13.4 189 140-344 63-268 (269)
43 PRK11689 aromatic amino acid e 98.2 5.6E-05 1.2E-09 72.2 16.5 130 202-347 4-137 (295)
44 PRK11272 putative DMT superfam 98.2 0.00014 2.9E-09 69.5 17.4 129 205-347 11-141 (292)
45 PTZ00343 triose or hexose phos 98.1 0.00015 3.1E-09 71.3 17.6 127 211-346 58-185 (350)
46 COG2962 RarD Predicted permeas 98.1 0.00017 3.7E-09 67.7 16.4 140 201-348 6-145 (293)
47 PRK02971 4-amino-4-deoxy-L-ara 98.1 0.00012 2.6E-09 61.5 14.0 122 202-350 2-125 (129)
48 PRK11453 O-acetylserine/cystei 98.1 0.00012 2.6E-09 70.1 15.9 125 204-347 6-132 (299)
49 PF05653 Mg_trans_NIPA: Magnes 98.1 1.1E-05 2.3E-10 77.5 7.8 54 140-193 68-121 (300)
50 TIGR00950 2A78 Carboxylate/Ami 98.0 0.00012 2.6E-09 68.0 13.9 117 215-347 2-119 (260)
51 PF13536 EmrE: Multidrug resis 98.0 4.1E-06 8.8E-11 68.6 3.2 58 140-198 53-110 (113)
52 TIGR00817 tpt Tpt phosphate/ph 98.0 0.00037 8E-09 66.7 16.4 123 213-346 13-136 (302)
53 PF13536 EmrE: Multidrug resis 97.9 0.0004 8.7E-09 56.7 13.3 71 279-350 38-109 (113)
54 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00047 1E-08 65.9 13.1 132 203-349 2-138 (290)
55 KOG2922 Uncharacterized conser 97.6 0.0004 8.6E-09 66.1 9.2 207 140-350 82-309 (335)
56 COG0697 RhaT Permeases of the 97.5 0.0052 1.1E-07 57.3 16.7 140 201-351 6-147 (292)
57 PRK13499 rhamnose-proton sympo 97.5 0.0043 9.3E-08 60.5 15.6 203 140-348 91-342 (345)
58 PRK15051 4-amino-4-deoxy-L-ara 97.5 9.7E-05 2.1E-09 60.4 3.2 54 140-193 55-108 (111)
59 PF08449 UAA: UAA transporter 97.4 0.0024 5.2E-08 61.2 13.0 126 214-352 12-141 (303)
60 PF00892 EamA: EamA-like trans 97.4 6.8E-05 1.5E-09 61.1 1.5 53 140-192 72-124 (126)
61 PRK15051 4-amino-4-deoxy-L-ara 97.4 0.0024 5.2E-08 52.2 10.5 59 288-346 50-108 (111)
62 PRK10532 threonine and homoser 97.3 0.011 2.3E-07 56.5 15.4 125 201-345 11-135 (293)
63 PF04142 Nuc_sug_transp: Nucle 97.2 0.0012 2.5E-08 61.7 7.5 76 276-351 18-93 (244)
64 PF06027 DUF914: Eukaryotic pr 97.2 0.0062 1.3E-07 59.3 12.7 71 279-349 83-153 (334)
65 PF04657 DUF606: Protein of un 97.1 0.023 5E-07 48.3 13.8 130 204-344 3-138 (138)
66 PRK13499 rhamnose-proton sympo 96.9 0.033 7.1E-07 54.4 14.7 138 201-348 6-154 (345)
67 KOG2234 Predicted UDP-galactos 96.8 0.063 1.4E-06 52.0 15.7 140 204-346 17-163 (345)
68 PRK09541 emrE multidrug efflux 96.7 0.025 5.3E-07 46.2 10.6 56 294-349 49-105 (110)
69 PRK10452 multidrug efflux syst 96.7 0.0093 2E-07 49.4 8.2 57 294-350 49-106 (120)
70 COG2076 EmrE Membrane transpor 96.6 0.051 1.1E-06 43.9 11.1 54 296-349 51-105 (106)
71 PRK11431 multidrug efflux syst 96.5 0.051 1.1E-06 43.9 11.1 53 296-348 50-103 (105)
72 COG2510 Predicted membrane pro 96.4 0.00091 2E-08 55.4 0.5 55 140-194 85-139 (140)
73 PRK10650 multidrug efflux syst 96.4 0.15 3.3E-06 41.5 13.4 51 296-346 56-107 (109)
74 PF07857 DUF1632: CEO family ( 96.2 0.0092 2E-07 55.8 5.5 132 203-352 1-139 (254)
75 COG2076 EmrE Membrane transpor 96.1 0.0097 2.1E-07 48.0 4.5 55 140-194 48-103 (106)
76 PRK02971 4-amino-4-deoxy-L-ara 96.0 0.0075 1.6E-07 50.7 3.7 56 140-195 66-123 (129)
77 PRK09541 emrE multidrug efflux 96.0 0.0079 1.7E-07 49.1 3.7 55 140-194 48-103 (110)
78 PRK10452 multidrug efflux syst 96.0 0.0096 2.1E-07 49.3 4.2 55 140-194 48-103 (120)
79 PRK10650 multidrug efflux syst 95.8 0.011 2.4E-07 48.1 4.1 53 140-192 53-106 (109)
80 PRK11431 multidrug efflux syst 95.7 0.014 3.1E-07 47.1 4.2 54 140-193 47-101 (105)
81 COG4975 GlcU Putative glucose 95.7 0.00043 9.4E-09 63.5 -5.2 194 140-349 77-287 (288)
82 PF03151 TPT: Triose-phosphate 95.6 0.021 4.6E-07 48.5 5.1 70 108-192 82-151 (153)
83 PF06379 RhaT: L-rhamnose-prot 95.1 0.91 2E-05 44.1 14.7 143 201-350 6-156 (344)
84 COG3238 Uncharacterized protei 95.0 1.3 2.8E-05 38.1 14.1 137 201-347 4-146 (150)
85 PF05653 Mg_trans_NIPA: Magnes 94.7 0.32 7E-06 46.7 10.7 117 200-346 5-121 (300)
86 PF00893 Multi_Drug_Res: Small 93.6 0.11 2.4E-06 40.8 4.4 45 140-184 47-92 (93)
87 PF10639 UPF0546: Uncharacteri 93.4 0.11 2.5E-06 42.4 4.2 53 140-192 59-112 (113)
88 PF00893 Multi_Drug_Res: Small 92.6 0.62 1.3E-05 36.6 7.2 47 292-338 46-93 (93)
89 PF06800 Sugar_transport: Suga 92.1 1.3 2.9E-05 41.8 9.9 77 277-353 47-128 (269)
90 KOG4510 Permease of the drug/m 91.9 0.056 1.2E-06 50.5 0.5 54 293-346 115-168 (346)
91 KOG2765 Predicted membrane pro 91.6 0.17 3.7E-06 49.5 3.4 76 276-351 160-235 (416)
92 KOG1581 UDP-galactose transpor 90.8 2.3 5E-05 40.6 10.1 128 212-352 24-160 (327)
93 COG5006 rhtA Threonine/homoser 90.4 0.19 4.1E-06 46.7 2.3 53 140-192 228-280 (292)
94 KOG4314 Predicted carbohydrate 89.6 0.25 5.4E-06 44.3 2.4 64 288-351 66-129 (290)
95 TIGR00803 nst UDP-galactose tr 87.8 0.7 1.5E-05 42.0 4.2 52 140-191 170-221 (222)
96 KOG1580 UDP-galactose transpor 86.7 1.6 3.6E-05 40.2 5.8 62 289-350 99-160 (337)
97 PF10639 UPF0546: Uncharacteri 85.5 3.4 7.3E-05 33.9 6.6 42 303-344 70-111 (113)
98 KOG1444 Nucleotide-sugar trans 83.6 40 0.00086 32.6 13.8 131 203-346 13-148 (314)
99 KOG1441 Glucose-6-phosphate/ph 80.3 21 0.00045 34.6 10.9 120 217-346 32-176 (316)
100 COG4975 GlcU Putative glucose 79.4 0.66 1.4E-05 43.1 0.3 132 203-350 3-139 (288)
101 KOG3912 Predicted integral mem 62.1 22 0.00049 33.9 6.1 65 282-346 93-157 (372)
102 KOG2922 Uncharacterized conser 61.2 6.1 0.00013 38.1 2.3 117 200-346 19-135 (335)
103 PRK02237 hypothetical protein; 54.1 34 0.00074 27.7 5.1 44 304-347 62-105 (109)
104 PF04342 DUF486: Protein of un 51.7 22 0.00049 28.6 3.7 29 316-344 77-105 (108)
105 COG5070 VRG4 Nucleotide-sugar 51.7 1.8E+02 0.0038 27.1 9.9 60 292-351 85-144 (309)
106 PF02694 UPF0060: Uncharacteri 50.0 35 0.00076 27.6 4.6 44 304-347 60-103 (107)
107 TIGR02865 spore_II_E stage II 42.3 4.6E+02 0.01 28.7 13.3 43 150-192 12-54 (764)
108 PF07444 Ycf66_N: Ycf66 protei 41.7 35 0.00075 26.4 3.3 31 326-356 4-34 (84)
109 COG3169 Uncharacterized protei 39.3 82 0.0018 25.1 5.1 29 316-344 84-112 (116)
110 KOG2766 Predicted membrane pro 38.8 8.6 0.00019 36.1 -0.5 65 282-346 85-149 (336)
111 PF05297 Herpes_LMP1: Herpesvi 38.7 10 0.00022 36.0 0.0 102 150-252 51-159 (381)
112 PF04342 DUF486: Protein of un 36.1 22 0.00047 28.7 1.5 31 162-192 76-106 (108)
113 KOG1442 GDP-fucose transporter 35.4 11 0.00023 35.9 -0.5 51 294-344 121-171 (347)
114 PF11044 TMEMspv1-c74-12: Plec 33.4 84 0.0018 21.2 3.6 10 340-349 21-30 (49)
115 COG4147 DhlC Predicted symport 33.4 3E+02 0.0065 28.5 9.3 138 202-351 361-510 (529)
116 PF05977 MFS_3: Transmembrane 32.4 5.9E+02 0.013 26.4 13.3 28 296-323 341-368 (524)
117 PF06379 RhaT: L-rhamnose-prot 31.7 5.1E+02 0.011 25.5 16.7 206 140-347 91-340 (344)
118 PRK11902 ampG muropeptide tran 29.0 5.4E+02 0.012 24.9 16.0 37 315-351 356-392 (402)
119 COG2271 UhpC Sugar phosphate p 24.4 7.5E+02 0.016 25.3 10.3 50 301-351 159-209 (448)
120 PF06570 DUF1129: Protein of u 23.7 4E+02 0.0088 23.7 7.8 23 202-224 179-201 (206)
121 PF03812 KdgT: 2-keto-3-deoxyg 23.7 4.5E+02 0.0097 25.5 8.3 102 156-257 148-280 (314)
122 KOG4812 Golgi-associated prote 23.5 2.2E+02 0.0047 26.6 5.8 17 328-344 220-236 (262)
123 KOG4831 Unnamed protein [Funct 21.5 43 0.00093 27.1 0.8 50 143-192 73-123 (125)
124 PRK14772 lipoprotein signal pe 21.3 5E+02 0.011 23.2 7.6 15 120-134 34-48 (190)
125 COG1742 Uncharacterized conser 21.1 1.1E+02 0.0025 24.6 3.1 39 157-195 67-105 (109)
126 PF00909 Ammonium_transp: Ammo 20.3 8.5E+02 0.018 24.2 10.1 96 150-247 225-324 (399)
No 1
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-38 Score=299.34 Aligned_cols=243 Identities=41% Similarity=0.583 Sum_probs=218.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhHHhh--hCCCcc--------------------------------------------
Q 018012 106 PALVTGFFFFMWYFLNVIFNILNKRIYN--YFPYPY-------------------------------------------- 139 (362)
Q Consensus 106 ~~l~~~~~~~~w~~~s~~~~i~NK~il~--~f~~P~-------------------------------------------- 139 (362)
+.+..+.++..||++|+.++++||++++ +|+||+
T Consensus 14 ~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~ 93 (316)
T KOG1441|consen 14 KILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF 93 (316)
T ss_pred hhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH
Confidence 4677889999999999999999999999 799998
Q ss_pred -------eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCccccHHHHHHHHHHHH
Q 018012 140 -------NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNI 212 (362)
Q Consensus 140 -------n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s~~~~G~ilalls~l 212 (362)
|.|+.|++||++|++|+++|+|++++++++.+|++++..++++++++.||++++.+|.+||+.|++.++++++
T Consensus 94 ~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~ 173 (316)
T KOG1441|consen 94 CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNL 173 (316)
T ss_pred HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc----CCChHHHHHHHHHHHHHHHH-HHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHH
Q 018012 213 SFTYRSIYSKKAMT----DMDSTNIYAYISIIALFVCI-PPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHL 287 (362)
Q Consensus 213 ~~a~~~vl~k~~~~----~~~~~~~~~~~~~~s~i~l~-p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 287 (362)
.++++++++|+.++ ++|+++++.|+++++++.++ |+....|+... . ++.. ...+.. ++. ++++.+++|+
T Consensus 174 ~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~-~~~~--~~~~~~-~~~-~~~~sv~~f~ 247 (316)
T KOG1441|consen 174 AFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-V-GFLT--APWFVT-FLI-LLLNSVLAFL 247 (316)
T ss_pred HHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-e-eeec--cccchh-hHH-HHHHHHHHHH
Confidence 99999999999883 48999999999999999999 88887777654 1 1111 112222 233 3444499999
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhchHH
Q 018012 288 YNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE 354 (362)
Q Consensus 288 ~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~~~~ 354 (362)
+|+..|++++++||+|++|+|++|++++++.|+++|++++|+.|++|++++++|+++|++.|.++++
T Consensus 248 ~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 248 LNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999987654
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=9.3e-36 Score=290.92 Aligned_cols=244 Identities=37% Similarity=0.622 Sum_probs=216.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhHHhhhCCCcc---------------------------------------------
Q 018012 105 YPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPY--------------------------------------------- 139 (362)
Q Consensus 105 ~~~l~~~~~~~~w~~~s~~~~i~NK~il~~f~~P~--------------------------------------------- 139 (362)
.+.++...+|+.||.+|+..+++||++++.+|||+
T Consensus 45 ~~~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 45 NFKWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999
Q ss_pred -------eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCccccHHHHHHHHHHHH
Q 018012 140 -------NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNI 212 (362)
Q Consensus 140 -------n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s~~~~G~ilalls~l 212 (362)
|.|+++++++++|++|+++|+|+++++++++|||+++.++++++++++|+++++.+|.++++.|++++++|++
T Consensus 125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~ 204 (350)
T PTZ00343 125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNL 204 (350)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC-------CChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhh---hhhhhchHHHHHHHHHHH
Q 018012 213 SFTYRSIYSKKAMTD-------MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSD---AISKVGMVKFISDLFWVG 282 (362)
Q Consensus 213 ~~a~~~vl~k~~~~~-------~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g 282 (362)
++++|+++.|+.+++ +++.+++.++.+++.++++|+.+..|.+.... .+.+ .........++..++.++
T Consensus 205 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~l~~i~~s~ 283 (350)
T PTZ00343 205 GSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVP-VWTNYTANMTNYTKGIIIFKIFFSG 283 (350)
T ss_pred HHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhhhcccccchHHHHHHHHHHH
Confidence 999999999998854 56788899999999999999988777643211 1111 011111223344567789
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 283 MFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 283 ~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
++++++|.+.|+++++++|+++++.+++||++++++|++++||++++.+++|.++++.|+++|++.|
T Consensus 284 l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 284 VWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999864
No 3
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=1.2e-34 Score=277.49 Aligned_cols=244 Identities=61% Similarity=0.977 Sum_probs=209.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhhCCCcc------------------------------------------------
Q 018012 108 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPY------------------------------------------------ 139 (362)
Q Consensus 108 l~~~~~~~~w~~~s~~~~i~NK~il~~f~~P~------------------------------------------------ 139 (362)
+++..++.+||.+|+.++++||++++.+++|+
T Consensus 1 ~~~~~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (302)
T TIGR00817 1 LQTGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHV 80 (302)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999
Q ss_pred --eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCccccHHHHHHHHHHHHHHHHH
Q 018012 140 --NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYR 217 (362)
Q Consensus 140 --n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s~~~~G~ilalls~l~~a~~ 217 (362)
|.+++|+++++++++++++|+|+++++++++|||+++.++++++++++|+++....|.+++..|+++++++++++++|
T Consensus 81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~ 160 (302)
T TIGR00817 81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSR 160 (302)
T ss_pred HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887777788889999999999999999
Q ss_pred HHHHHHhhc--CCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHH-HHHHHHHHHHH
Q 018012 218 SIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM-FYHLYNQLATN 294 (362)
Q Consensus 218 ~vl~k~~~~--~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~l~~~~~~~ 294 (362)
.++.|+.++ ++|+.++..|+...+.+.+.|+....|+++...+.+.+.........++...++.+. +++.+|..++.
T Consensus 161 ~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (302)
T TIGR00817 161 NIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFM 240 (302)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 899999999999999999999988777644322211110000111122322333333 56667778889
Q ss_pred HhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhc
Q 018012 295 TLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 295 ~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~ 351 (362)
+++++||.++++.+++||++++++|++++||++++.+++|.++++.|+++|++.|.+
T Consensus 241 ~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 241 LLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999976643
No 4
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.93 E-value=3e-25 Score=204.95 Aligned_cols=238 Identities=18% Similarity=0.274 Sum_probs=212.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhhCCCcc------------------------------------------------
Q 018012 108 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPY------------------------------------------------ 139 (362)
Q Consensus 108 l~~~~~~~~w~~~s~~~~i~NK~il~~f~~P~------------------------------------------------ 139 (362)
.....++++||++|+...+++|+.-..|+||+
T Consensus 15 V~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat 94 (349)
T KOG1443|consen 15 VLTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT 94 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh
Confidence 44556679999999999999999999999999
Q ss_pred -------eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCccccHHHHHHHHHHHH
Q 018012 140 -------NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNI 212 (362)
Q Consensus 140 -------n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s~~~~G~ilalls~l 212 (362)
|+|++|+++++|++.|+.+++|+.+++.+|.-|+++|.-.+.++++-+|+.+.++.+.+|+..|+.+.+.+.+
T Consensus 95 a~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~ 174 (349)
T KOG1443|consen 95 ALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASL 174 (349)
T ss_pred hcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC-----CChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhch---HHHHHHHHHHHHH
Q 018012 213 SFTYRSIYSKKAMTD-----MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGM---VKFISDLFWVGMF 284 (362)
Q Consensus 213 ~~a~~~vl~k~~~~~-----~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~l~~~g~~ 284 (362)
+.++++.+.|.++++ -+|.+..++..+...+.++|..+.+|+++.... ...+...+. ......+...|..
T Consensus 175 ~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~--s~~f~~~d~~~~~rv~g~i~l~g~l 252 (349)
T KOG1443|consen 175 LSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITS--SSIFRFQDTGLILRVIGLISLGGLL 252 (349)
T ss_pred hhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchh--hhHHHhcCccHHHHHHHHHHHHHHH
Confidence 999999999998843 478999999999999999999999999875321 122222222 1223456667889
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 285 YHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 285 ~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
+++...+.|..+.+++.+|.++.+..|.+.+.+++.++.+|.++..+++|..+++.|+..|..
T Consensus 253 aF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 253 AFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999944
No 5
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.93 E-value=3.2e-25 Score=209.78 Aligned_cols=226 Identities=17% Similarity=0.246 Sum_probs=194.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhHHhhhCCCcceeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhcc
Q 018012 105 YPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAP 184 (362)
Q Consensus 105 ~~~l~~~~~~~~w~~~s~~~~i~NK~il~~f~~P~n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l 184 (362)
+.......||.+|+.+|..+ |.||.|++|+..+++.+++-+||..++.++.+||+++.|.+++.+
T Consensus 157 ~~ak~sl~fc~lWF~anl~~---------------naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~ 221 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTS---------------NAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFV 221 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 33444556899999999999 999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEeecCc--------cccHHHHHHHHHHHHHHHHHHHHHHHhhc----CCChHHHHHHHHHHHHHHHHHHHHHh
Q 018012 185 VVIGVSMASLTEL--------SFNWTGFISAMISNISFTYRSIYSKKAMT----DMDSTNIYAYISIIALFVCIPPAIIV 252 (362)
Q Consensus 185 ~v~Gv~l~~~~~~--------s~~~~G~ilalls~l~~a~~~vl~k~~~~----~~~~~~~~~~~~~~s~i~l~p~~~~~ 252 (362)
.++|+++++.+|. +-...|.++++++++.||+|.++.|+..+ ++|...+++|.+++.+++++|..++.
T Consensus 222 si~GViiVt~~~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL 301 (416)
T KOG2765|consen 222 SIAGVIIVTMGDSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL 301 (416)
T ss_pred hhccEEEEEeccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999987742 23479999999999999999999999883 57888999999999999999988876
Q ss_pred cchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHH
Q 018012 253 EGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTG 332 (362)
Q Consensus 253 e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~i 332 (362)
+....-. ++.+...++...++.+++..++..++|.+++-.++|++.+++.+++.+++++.++++-|.++|+.++
T Consensus 302 ~~~~~e~------F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~i 375 (416)
T KOG2765|consen 302 DFFGEER------FELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYI 375 (416)
T ss_pred HHhccCc------ccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHH
Confidence 5432211 1222333444455666777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 018012 333 IGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 333 iG~~lil~Gv~ly~~~k~~ 351 (362)
+|.+.+++|++..|+..+.
T Consensus 376 iGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 376 IGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred HHHHHHHHHHhheeccccc
Confidence 9999999999998876543
No 6
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.4e-25 Score=207.03 Aligned_cols=235 Identities=16% Similarity=0.256 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHhhHHhhhCCCcc----------------------------------------------------eee
Q 018012 115 FMWYFLNVIFNILNKRIYNYFPYPY----------------------------------------------------NVS 142 (362)
Q Consensus 115 ~~w~~~s~~~~i~NK~il~~f~~P~----------------------------------------------------n~s 142 (362)
..|.+.|+.+.+.||++++.++||. ..+
T Consensus 18 ~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~s 97 (314)
T KOG1444|consen 18 LFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKS 97 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHcccc
Confidence 4444569999999999999999999 689
Q ss_pred ecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCccccHHHHHHHHHHHHHHHHHHHHHH
Q 018012 143 FAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSK 222 (362)
Q Consensus 143 L~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s~~~~G~ilalls~l~~a~~~vl~k 222 (362)
++|++++.++++|..+|+++++.+.+++|.+++...+.++..+.+|....+.+|.+++..|+.|++.++++.+.+.++.|
T Consensus 98 lk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~k 177 (314)
T KOG1444|consen 98 LKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVK 177 (314)
T ss_pred ccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh--cCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 018012 223 KAM--TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVA 300 (362)
Q Consensus 223 ~~~--~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~~~l~~~s 300 (362)
+.. .+.+.+.+++|+++.+++.+....++.++.+- .+.+.+......++..+.++|++++..+++.++|.+.+|
T Consensus 178 k~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~----l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~S 253 (314)
T KOG1444|consen 178 KSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDA----LSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNS 253 (314)
T ss_pred HhhccccccceeEEeehhHHHHHHHHHHHHHhcchHH----HHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 987 46788999999999999999888877765431 112222233356677899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhchHH
Q 018012 301 PLTHAVGNVLKRVFVIGF-SILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE 354 (362)
Q Consensus 301 plt~sv~~~lk~v~~i~~-s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~~~~ 354 (362)
++|+++.+ ++..+.+.+ .++++|++.++.+++|..+.++|..+|++.+.++|+
T Consensus 254 AtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 254 ATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred ccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 99999999 555555555 455556789999999999999999999999877654
No 7
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.90 E-value=6.3e-23 Score=197.47 Aligned_cols=225 Identities=13% Similarity=0.154 Sum_probs=186.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhHHhhhCCCcceeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhcc
Q 018012 105 YPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAP 184 (362)
Q Consensus 105 ~~~l~~~~~~~~w~~~s~~~~i~NK~il~~f~~P~n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l 184 (362)
++.++-.++.++|...|... +.|++|++++..|++.++..+|+++++++++|+|+++.+++|+++
T Consensus 77 ~~~w~y~lla~~Dv~aN~~~---------------v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i 141 (334)
T PF06027_consen 77 RPWWKYFLLALLDVEANYLV---------------VLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLI 141 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHH---------------HHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34555666677777777777 899999999999999999999999999999999999999999999
Q ss_pred ccceeEEEeecCc---------cccHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcch
Q 018012 185 VVIGVSMASLTEL---------SFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGP 255 (362)
Q Consensus 185 ~v~Gv~l~~~~~~---------s~~~~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~ 255 (362)
+++|++++...|. +....|++++++++++||+++++.|+..++.+..++++..+++++++..+...++|..
T Consensus 142 ~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~ 221 (334)
T PF06027_consen 142 CIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERS 221 (334)
T ss_pred HHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehh
Confidence 9999988765542 2347999999999999999999999999999999999999999999999988888876
Q ss_pred hhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHH
Q 018012 256 QLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGT 335 (362)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~ 335 (362)
++....|. . ..+..++..+++.+......-..++.+||+..++......+.++++++++||+++++..++|.
T Consensus 222 ~i~~~~w~-------~-~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af 293 (334)
T PF06027_consen 222 GIESIHWT-------S-QVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAF 293 (334)
T ss_pred hhhccCCC-------h-hhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHH
Confidence 65333221 1 122223333444444444445568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhch
Q 018012 336 VIAIAGVAAYSYIKAQM 352 (362)
Q Consensus 336 ~lil~Gv~ly~~~k~~~ 352 (362)
++++.|+++|+..+.++
T Consensus 294 ~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 294 ALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHhheEEccCCcc
Confidence 99999999999876543
No 8
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.90 E-value=8.9e-22 Score=188.83 Aligned_cols=209 Identities=19% Similarity=0.289 Sum_probs=176.7
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCcc----c------cHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELS----F------NWTGFISAMI 209 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s----~------~~~G~ilall 209 (362)
|.|++|+|+++++++|++.|+++++++++++|||+++.++++++++++|+++....|.+ . ...|+++.++
T Consensus 82 ~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~ 161 (303)
T PF08449_consen 82 NAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLL 161 (303)
T ss_pred HHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998765421 1 1249999999
Q ss_pred HHHHHHHHHHHHHHhhc--CCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHH
Q 018012 210 SNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHL 287 (362)
Q Consensus 210 s~l~~a~~~vl~k~~~~--~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 287 (362)
+.++.+++.+++++..+ +.++.+.++|++.++++++++..+.++..+..+ .+. +. ...+..+..++..+++..+
T Consensus 162 sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~-~~~--f~-~~~p~~~~~l~~~s~~~~~ 237 (303)
T PF08449_consen 162 SLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRS-AIR--FI-SAHPSVLLYLLLFSLTGAL 237 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhH-HHH--HH-HHhHHHHHHHHHHHHHHHH
Confidence 99999999999999885 467899999999999999988887733111101 110 00 1122345667777888888
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhch
Q 018012 288 YNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM 352 (362)
Q Consensus 288 ~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~~ 352 (362)
.+...+.++++.||++.++..+++.++++++|+++||+++++.+++|+++++.|..+|++.|+|+
T Consensus 238 g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 238 GQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 88888889999999999999999999999999999999999999999999999999999988764
No 9
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=8.7e-25 Score=198.93 Aligned_cols=214 Identities=17% Similarity=0.287 Sum_probs=190.7
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecC---ccccHHHHHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE---LSFNWTGFISAMISNISFTY 216 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~---~s~~~~G~ilalls~l~~a~ 216 (362)
|.+|+|++|++|++-+++..+|+++++++++||+-+.....+.+++++|..+-...| ..+++.|.++.+.+.++-|+
T Consensus 120 nlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAl 199 (347)
T KOG1442|consen 120 NLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVAL 199 (347)
T ss_pred ceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887766 56789999999999999999
Q ss_pred HHHHHHHhhcCCC--hHHHHHHHHHHHHHHHHHHHHHhcch-hhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 018012 217 RSIYSKKAMTDMD--STNIYAYISIIALFVCIPPAIIVEGP-QLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLAT 293 (362)
Q Consensus 217 ~~vl~k~~~~~~~--~~~~~~~~~~~s~i~l~p~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~ 293 (362)
..++.|+....++ -+.+.+|++..++++.+|..++.+.. .++.. ++.....+|..+.++|+++|..|+...
T Consensus 200 naiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~------~~l~a~~Fw~~mtLsglfgF~mgyvTg 273 (347)
T KOG1442|consen 200 NAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGF------PHLPAIKFWILMTLSGLFGFAMGYVTG 273 (347)
T ss_pred HHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCc------ccchHHHHHHHHHHHHHHHHHhhheee
Confidence 9999999876654 47999999999999999988876432 23221 233345788999999999999999999
Q ss_pred HHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhchHHHHHhh
Q 018012 294 NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEKRQM 359 (362)
Q Consensus 294 ~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~~~~~~~~~ 359 (362)
+.+|.+||+||++.++.|.....++++.+++|..+...|-|-.+++.|..+|.+.|+.+.+++.++
T Consensus 274 ~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~ 339 (347)
T KOG1442|consen 274 WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQ 339 (347)
T ss_pred EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999998776654443
No 10
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.87 E-value=9e-21 Score=185.44 Aligned_cols=208 Identities=13% Similarity=0.149 Sum_probs=161.6
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHH------hccccChhhhhhhccccceeEEEee-cCc---------------
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFI------LGQQLPLTLWLSLAPVVIGVSMASL-TEL--------------- 197 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~------l~er~s~~~~~sl~l~v~Gv~l~~~-~~~--------------- 197 (362)
+.+++|++++.+.++.++.|+|++++++++ ++||.++.++++++++++|+.++.. .+.
T Consensus 96 ~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~ 175 (358)
T PLN00411 96 YIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQ 175 (358)
T ss_pred HHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccc
Confidence 678999999999999999999999999999 6999999999999999999977542 110
Q ss_pred --------ccc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCChH-HHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhh
Q 018012 198 --------SFN-WTGFISAMISNISFTYRSIYSKKAMTDMDST-NIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAIS 267 (362)
Q Consensus 198 --------s~~-~~G~ilalls~l~~a~~~vl~k~~~~~~~~~-~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~ 267 (362)
..+ ..|+.++++++++|++|++++|+..+++++. ....+++.++.+.+.++....|..+... |. .
T Consensus 176 ~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~--~~---~ 250 (358)
T PLN00411 176 LSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV--WI---I 250 (358)
T ss_pred cccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccc--ce---e
Confidence 112 4599999999999999999999988887554 5566666666666666666655322111 10 0
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 268 KVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 268 ~~~~~~~~~~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
..+. .++ .++..+++..+...++++++++.+|...++..++.|++++++|++++||++++.+++|.++++.|+++.++
T Consensus 251 ~~~~-~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 251 HFDI-TLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred ccch-HHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 1111 112 23334444444555778899999999999999999999999999999999999999999999999999987
Q ss_pred hhhchHH
Q 018012 348 IKAQMEE 354 (362)
Q Consensus 348 ~k~~~~~ 354 (362)
.+++|.+
T Consensus 329 ~~~~~~~ 335 (358)
T PLN00411 329 GKANEEK 335 (358)
T ss_pred hhhhhhh
Confidence 7665543
No 11
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.85 E-value=2.7e-21 Score=171.55 Aligned_cols=232 Identities=14% Similarity=0.206 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHhhHHhhhCCCcc-------------------------------------------------eeeecc
Q 018012 115 FMWYFLNVIFNILNKRIYNYFPYPY-------------------------------------------------NVSFAA 145 (362)
Q Consensus 115 ~~w~~~s~~~~i~NK~il~~f~~P~-------------------------------------------------n~sL~~ 145 (362)
..|.+.|+.+...||++++...|-+ ..+++|
T Consensus 12 lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqy 91 (309)
T COG5070 12 LSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQY 91 (309)
T ss_pred HHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceee
Confidence 3444569999999999999755554 789999
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCcc--------ccHHHHHHHHHHHHHHHHH
Q 018012 146 VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELS--------FNWTGFISAMISNISFTYR 217 (362)
Q Consensus 146 ~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s--------~~~~G~ilalls~l~~a~~ 217 (362)
++++.+++.|.++.+.++..+.+++|.|.+-....+.++++..-..+.++|.+ +| .|++|+..+|+..+.+
T Consensus 92 L~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Nclssaaf 170 (309)
T COG5070 92 LAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNCLSSAAF 170 (309)
T ss_pred eeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhhHhHHHH
Confidence 99999999999999999999999999999999999999999998888888852 33 5999999999999999
Q ss_pred HHHHHHhh--cCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018012 218 SIYSKKAM--TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNT 295 (362)
Q Consensus 218 ~vl~k~~~--~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~~~ 295 (362)
-...|+.. .+....+.++|+++++..+++.+.+++|++... ....++ .......++++|++++...+|..|+
T Consensus 171 VL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~--n~annl----~~d~l~am~ISgl~svgiSy~saWc 244 (309)
T COG5070 171 VLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG--NLANNL----SVDSLMAMFISGLCSVGISYCSAWC 244 (309)
T ss_pred HHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc--hhhcCC----ChHHHHHHHHHHHHHhhhhhcccee
Confidence 99998865 456678899999999999999999999876431 111111 1122456888999999999999999
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhchH
Q 018012 296 LERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQME 353 (362)
Q Consensus 296 l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~~~ 353 (362)
++.+|++|+++.+.++.....+.|.++||++.+...+..+.+-.....+|.++|.+++
T Consensus 245 vrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 245 VRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred EeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999886643
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.83 E-value=9.3e-19 Score=163.32 Aligned_cols=191 Identities=17% Similarity=0.223 Sum_probs=156.7
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeec-CccccHHHHHHHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMISNISFTYRS 218 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~-~~s~~~~G~ilalls~l~~a~~~ 218 (362)
..|++|++++..+++.++.|+++++++.+++|||++++++.+++++++|+.++... +.+.+..|++++++++++|+.+.
T Consensus 65 ~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~ 144 (260)
T TIGR00950 65 FVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGT 144 (260)
T ss_pred HHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999998877543 34556789999999999999999
Q ss_pred HHHHHhhcCCCh--HHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHH-HHHHHHHHHHH
Q 018012 219 IYSKKAMTDMDS--TNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMF-YHLYNQLATNT 295 (362)
Q Consensus 219 vl~k~~~~~~~~--~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~l~~~~~~~~ 295 (362)
++.|+..++.++ ..+..+...++.+++.|.....+..... +. ..+..++..+++ ..+...+++++
T Consensus 145 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~a 212 (260)
T TIGR00950 145 VLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQA-----------LS-LQWGALLYLGLIGTALAYFLWNKG 212 (260)
T ss_pred HHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----------ch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998877774 4555567778888888876654322110 11 123334444444 34555567888
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHH
Q 018012 296 LERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGV 342 (362)
Q Consensus 296 l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv 342 (362)
+++.++.+.++...++|+++++++++++||++++.+++|.++++.|+
T Consensus 213 ~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 213 LTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999986
No 13
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.82 E-value=1.8e-18 Score=165.23 Aligned_cols=191 Identities=12% Similarity=0.033 Sum_probs=148.3
Q ss_pred cccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCc-----------cccHHHHHHHHHHHH
Q 018012 144 AAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL-----------SFNWTGFISAMISNI 212 (362)
Q Consensus 144 ~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~-----------s~~~~G~ilalls~l 212 (362)
++++.+...++.++.|+|+++++++++|||+++.+++++++.++|++++...+. +.+..|+++++++++
T Consensus 87 ~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~ 166 (295)
T PRK11689 87 TRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAF 166 (295)
T ss_pred ccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHH
Confidence 456777888999999999999999999999999999999999999988765432 123569999999999
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 018012 213 SFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLA 292 (362)
Q Consensus 213 ~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~ 292 (362)
+|+.|+++.||..++.++...... .+.+.+.+.....+.+. . ..+.. .+..+++.++...+..+++
T Consensus 167 ~~A~~~v~~k~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~---~-------~~~~~-~~~~l~~~~~~t~~~~~l~ 232 (295)
T PRK11689 167 IWAAYCNVTRKYARGKNGITLFFI---LTALALWIKYFLSPQPA---M-------VFSLP-AIIKLLLAAAAMGFGYAAW 232 (295)
T ss_pred HHHHHHHHHhhccCCCCchhHHHH---HHHHHHHHHHHHhcCcc---c-------cCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999998878887765332 22333333333222111 0 01111 2333445556666666778
Q ss_pred HHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhh
Q 018012 293 TNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 348 (362)
Q Consensus 293 ~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~ 348 (362)
++++++.+|.+.++..+++|+++++++++++||++++.+++|.++++.|+++....
T Consensus 233 ~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 233 NVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred HHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 88999999999999999999999999999999999999999999999998776543
No 14
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.81 E-value=4.7e-18 Score=162.67 Aligned_cols=205 Identities=16% Similarity=0.283 Sum_probs=152.9
Q ss_pred eeecc-cchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecC---ccccHHHHHHHHHHHHHHHH
Q 018012 141 VSFAA-VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE---LSFNWTGFISAMISNISFTY 216 (362)
Q Consensus 141 ~sL~~-~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~---~s~~~~G~ilalls~l~~a~ 216 (362)
.+++| .+.+...++.++.|+++.+++++++|||+++++++++++.++|+.++...+ .+.++.|+.++++++++|+.
T Consensus 78 ~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~ 157 (299)
T PRK11453 78 CAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWAC 157 (299)
T ss_pred HHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 34666 688999999999999999999999999999999999999999998775432 23456799999999999999
Q ss_pred HHHHHHHhhcCCCh---HHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHH-HHH
Q 018012 217 RSIYSKKAMTDMDS---TNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYN-QLA 292 (362)
Q Consensus 217 ~~vl~k~~~~~~~~---~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~-~~~ 292 (362)
|.+++|+..++.+. ..+..+....+.+.+.+.....|.+......+ ...+. ..+..+++.+++..... .++
T Consensus 158 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~l~~l~i~~t~~~~~l~ 232 (299)
T PRK11453 158 GNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSL----VTIDM-TTILSLMYLAFVATIVGYGIW 232 (299)
T ss_pred HHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh----ccCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999997654433 33344444444443333334444432111101 11122 23445555555544433 466
Q ss_pred HHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhh
Q 018012 293 TNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 293 ~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~ 350 (362)
++.+++.++.+.++...++|+++++++++++||++++.+++|.++++.|+++..+.++
T Consensus 233 ~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 233 GTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 7788999999999999999999999999999999999999999999999988766553
No 15
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.81 E-value=1.6e-18 Score=149.21 Aligned_cols=145 Identities=32% Similarity=0.465 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------CCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhc-hHHH
Q 018012 203 GFISAMISNISFTYRSIYSKKAMT-------DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVG-MVKF 274 (362)
Q Consensus 203 G~ilalls~l~~a~~~vl~k~~~~-------~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~-~~~~ 274 (362)
|++++++++++.++|+++.|+.++ +.++.+++.|+++.++++++|.+++.|+++...........+.. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 789999999999999999999774 46899999999999999999999999987743321111000111 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 275 ISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 275 ~~~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
+..++..|++++++|++.+.+++++||+|+++.+.+|+++.+++|+++|||++|+.+++|+++++.|+++|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 7778889999999999999999999999999999999999999999999999999999999999999999985
No 16
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.79 E-value=1.2e-17 Score=159.24 Aligned_cols=198 Identities=17% Similarity=0.124 Sum_probs=155.4
Q ss_pred eeee-cccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeec-CccccHHHHHHHHHHHHHHHHH
Q 018012 140 NVSF-AAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMISNISFTYR 217 (362)
Q Consensus 140 n~sL-~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~-~~s~~~~G~ilalls~l~~a~~ 217 (362)
+.+. ++++++..+++.++.|+++++++.+ +|||+++++++++++.++|+.+...+ +.+.+..|++++++++++|+.|
T Consensus 87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~ 165 (292)
T PRK11272 87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFG 165 (292)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHH
Confidence 3445 8899999999999999999999985 69999999999999999999877543 3445678999999999999999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHH-HHHHHHHHHHHh
Q 018012 218 SIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMF-YHLYNQLATNTL 296 (362)
Q Consensus 218 ~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~l~~~~~~~~l 296 (362)
.++.|+..++ ++.....+....+.+.+.+.....+.+.... .+ ...+..+++.+++ ..+....+++++
T Consensus 166 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~i~~l~i~~s~~~~~l~~~~~ 234 (292)
T PRK11272 166 SVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTAL---------PT-LSGFLALGYLAVFGSIIAISAYMYLL 234 (292)
T ss_pred HHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCccccc---------CC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997543 4555667777788887777665443221100 01 1123334444443 334445677788
Q ss_pred hccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 297 ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 297 ~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
++.++.+.++...++|+++.+++++++||++++.+++|.++++.|+++.+..+
T Consensus 235 ~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 235 RNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876543
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.76 E-value=6.8e-17 Score=154.51 Aligned_cols=196 Identities=13% Similarity=0.100 Sum_probs=144.1
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCccccHHHHHHHHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSI 219 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s~~~~G~ilalls~l~~a~~~v 219 (362)
+.++++++++..+++..+.|+++++++++++|||+++.++++++++++|+.++...+.+.. .++++++++|++|.+
T Consensus 91 ~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i 166 (296)
T PRK15430 91 IWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLAFSFAFYGL 166 (296)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999988753332221 468889999999999
Q ss_pred HHHHhhcCC--ChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018012 220 YSKKAMTDM--DSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLE 297 (362)
Q Consensus 220 l~k~~~~~~--~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~~~l~ 297 (362)
+.|+...+. +......+..+.+.+..++. .+.+.. . + .... ...+..+...++.+.+...+++++++
T Consensus 167 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~--~----~~~~-~~~~~~~~~~g~~t~i~~~~~~~a~~ 235 (296)
T PRK15430 167 VRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTS-H--M----GQNP-MSLNLLLIAAGIVTTVPLLCFTAAAT 235 (296)
T ss_pred HHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcc-c--c----cCCc-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999875322 22233333444433332211 111100 0 0 0001 11123344445455566678888899
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhh
Q 018012 298 RVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 298 ~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~ 350 (362)
+.+|.+.+...+++|+++++++++++||++++.+++|+++++.|+.+......
T Consensus 236 ~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 236 RLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877765443
No 18
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.74 E-value=2.9e-16 Score=149.95 Aligned_cols=193 Identities=13% Similarity=0.106 Sum_probs=146.1
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeec---CccccHHHHHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT---ELSFNWTGFISAMISNISFTY 216 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~---~~s~~~~G~ilalls~l~~a~ 216 (362)
..+++|++++.++++..+.|+++++++ +|++... ..+.+.++|+.++... ..+.+..|++++++++++|+.
T Consensus 89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~ 162 (293)
T PRK10532 89 YLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAI 162 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHH
Confidence 678999999999999999999998876 3565544 4456678998776422 223467899999999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHH-HHHHHHHHH
Q 018012 217 RSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYH-LYNQLATNT 295 (362)
Q Consensus 217 ~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~~~~~~~ 295 (362)
|.++.|+..++.++... .+...++.+++.|+....+. .. . .+. ..+..+++.|++.. +...++++.
T Consensus 163 ~~v~~r~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~---~-------~~~-~~~~~~l~lgv~~t~~~~~l~~~~ 229 (293)
T PRK10532 163 YILSGQRAGAEHGPATV-AIGSLIAALIFVPIGALQAG-EA---L-------WHW-SILPLGLAVAILSTALPYSLEMIA 229 (293)
T ss_pred HHHHHHHHhccCCchHH-HHHHHHHHHHHHHHHHHccC-cc---c-------CCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888776 45566777777776654332 10 0 011 11222334444433 333466778
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhc
Q 018012 296 LERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 296 l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~ 351 (362)
+++.++.+.++..+++|+++++++++++||++++.+++|.++++.|++.+....++
T Consensus 230 ~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 230 LTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999999766543
No 19
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.71 E-value=1.1e-16 Score=151.94 Aligned_cols=194 Identities=15% Similarity=0.227 Sum_probs=144.7
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecC-ccccHHHHHHHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE-LSFNWTGFISAMISNISFTYRS 218 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~-~s~~~~G~ilalls~l~~a~~~ 218 (362)
+.++++.+++..+++..+.|+++++++++++|||+++++++|++++++|+.++...+ .+.+..|+.++++++++|+.|.
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~ 160 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS 160 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence 567999999999999999999999999999999999999999999999998765433 2345678889999999999999
Q ss_pred HHHHHhhcCCChH-HHHHHHHHHHHHHH-HHHHHHh---cchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 018012 219 IYSKKAMTDMDST-NIYAYISIIALFVC-IPPAIIV---EGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLAT 293 (362)
Q Consensus 219 vl~k~~~~~~~~~-~~~~~~~~~s~i~l-~p~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~ 293 (362)
++.|+..++.++. ....+.. .+.+.. .|..... +.... .. .....+..+...++.+.+...+++
T Consensus 161 i~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~s~l~~~l~~ 229 (281)
T TIGR03340 161 LSDKAAALGVPAFYSALGYLG-IGFLAMGWPFLLLYLKRHGRSM---------FP-YARQILPSATLGGLMIGGAYALVL 229 (281)
T ss_pred hhccccccchhcccccHHHHH-HHHHHHHHHHHHHHHHHhccch---------hh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999865555442 2222222 222222 2322221 11100 00 011223334444555556666778
Q ss_pred HHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHH
Q 018012 294 NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAA 344 (362)
Q Consensus 294 ~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~l 344 (362)
+++++.++.+.+...++.|+++++++++++||++++.+++|+++++.|+++
T Consensus 230 ~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 230 WAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 889999999999999999999999999999999999999999999999875
No 20
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.66 E-value=2.1e-14 Score=134.83 Aligned_cols=195 Identities=19% Similarity=0.232 Sum_probs=151.7
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHH-HHhccccChhhhhhhccccceeEEEeecCcccc---HHHHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQ-FILGQQLPLTLWLSLAPVVIGVSMASLTELSFN---WTGFISAMISNISFT 215 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~-l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s~~---~~G~ilalls~l~~a 215 (362)
..++++++++.++++.++.|+++.+++. ++++||+++.++.++++.+.|+.++...+...+ ..|+.++++++++++
T Consensus 88 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a 167 (292)
T COG0697 88 FLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWA 167 (292)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999997 777999999999999999999999987665433 589999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHH-HHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHH-HHHHHHH
Q 018012 216 YRSIYSKKAMTDMDSTNIYA-YISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYH-LYNQLAT 293 (362)
Q Consensus 216 ~~~vl~k~~~~~~~~~~~~~-~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~~~~~ 293 (362)
++.++.|+.. +.++..... +..........+.. .+... ... . ...+..+...++... +...+++
T Consensus 168 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~---------~-~~~~~~~~~~g~~~~~i~~~~~~ 233 (292)
T COG0697 168 LYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFF--LSGFG-API---------L-SRAWLLLLYLGVFSTGLAYLLWY 233 (292)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHH--hcccc-ccC---------C-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 667766666 33331222222211 11111 000 0 111233444444444 4556778
Q ss_pred HHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhh
Q 018012 294 NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 348 (362)
Q Consensus 294 ~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~ 348 (362)
..+++.++...+....+.++++++.+++++||+++..+++|.++++.|+.+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999999999999999999999999999999999998765
No 21
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.4e-14 Score=134.59 Aligned_cols=205 Identities=15% Similarity=0.128 Sum_probs=173.4
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCc---------cccHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL---------SFNWTGFISAMIS 210 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~---------s~~~~G~ilalls 210 (362)
..||+|++-+.+.+.|++--+-+++++.++.|+|+++.++++..++.+|+.+....+. .++.+|+.++..+
T Consensus 101 yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~ 180 (327)
T KOG1581|consen 101 YEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGY 180 (327)
T ss_pred HHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999988754321 2457999999999
Q ss_pred HHHHHHHHHHHHHhhc--CCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhh-hchHHHHHHHHHHHHHHHH
Q 018012 211 NISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISK-VGMVKFISDLFWVGMFYHL 287 (362)
Q Consensus 211 ~l~~a~~~vl~k~~~~--~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~l 287 (362)
-++.++-+..++++.+ +++++++++++++++++......+ +..+.. ++++. ...++++..++.-+.++.+
T Consensus 181 L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li--~qg~~~-----~av~F~~~hp~~~~Di~l~s~~gav 253 (327)
T KOG1581|consen 181 LLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLI--LQGHLL-----PAVSFIKEHPDVAFDILLYSTCGAV 253 (327)
T ss_pred HHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhh--cCCCCc-----hHHHHHHcChhHHHHHHHHHHhhhh
Confidence 9999999999999885 579999999999999988876622 221111 11111 1123556777777888888
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhc
Q 018012 288 YNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 288 ~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~ 351 (362)
.+...|..+++-+|++.+..++.+..+.+.++.++||++++..|++|..+++.|+++-.+.|.+
T Consensus 254 GQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 254 GQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 8888899999999999999999999999999999999999999999999999999887777766
No 22
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1.2e-15 Score=136.76 Aligned_cols=200 Identities=16% Similarity=0.141 Sum_probs=167.1
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCc-------cccHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTEL-------SFNWTGFISAMISNI 212 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~-------s~~~~G~ilalls~l 212 (362)
|.+++|+|.+..-.-|++.|+-++++++++.+++.+|.++++++.+++|+++.-+.+. .....|-++.++|--
T Consensus 103 N~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~ 182 (337)
T KOG1580|consen 103 NQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLA 182 (337)
T ss_pred cchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999865531 223479999999999
Q ss_pred HHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHHHHHh-cchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 018012 213 SFTYRSIYSKKAMTDM--DSTNIYAYISIIALFVCIPPAIIV-EGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYN 289 (362)
Q Consensus 213 ~~a~~~vl~k~~~~~~--~~~~~~~~~~~~s~i~l~p~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 289 (362)
..++-...+.+.-..+ +...++.|+++.+.+.+-...++. |.+++.. + ... .+..+..+...++++.+.+
T Consensus 183 mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~y--F----~~R-hP~~~~~l~l~ai~s~LGQ 255 (337)
T KOG1580|consen 183 MDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFY--F----VQR-HPYVFWDLTLLAIASCLGQ 255 (337)
T ss_pred hcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHH--H----HHh-ccHHHHHHHHHHHHHHhhh
Confidence 9999998888865443 567899999999988876655543 3333211 1 111 1344566777889999999
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 290 QLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 290 ~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
++.|+.+...+|+|-|+..+.+..++++.|+++|+++++..||+|.++++.+...=.
T Consensus 256 ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 256 WFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 999999999999999999999999999999999999999999999999999876543
No 23
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.57 E-value=1.4e-15 Score=138.61 Aligned_cols=199 Identities=17% Similarity=0.138 Sum_probs=156.4
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEee-----cC---------ccccHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL-----TE---------LSFNWTGFI 205 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~-----~~---------~s~~~~G~i 205 (362)
.+|++|++.+-+.+|..++|+||.++++.++||++++...++.++.+.||+++.. +| .+.+..|..
T Consensus 115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~ 194 (346)
T KOG4510|consen 115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTV 194 (346)
T ss_pred HHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchH
Confidence 7899999999999999999999999999999999999999999999999999843 21 123457888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHH
Q 018012 206 SAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFY 285 (362)
Q Consensus 206 lalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 285 (362)
.++.++++-+.-.++.|+.-++.|......|.+.++++..++........++ ++.+. + ++.++..|+++
T Consensus 195 aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-P~cgk---------d-r~l~~~lGvfg 263 (346)
T KOG4510|consen 195 AAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQL-PHCGK---------D-RWLFVNLGVFG 263 (346)
T ss_pred HHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceec-Ccccc---------c-eEEEEEehhhh
Confidence 8888888888888888887788888777777777777766554443332222 22111 1 22345567888
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 286 HLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 286 ~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
++.+....+.+++--+--.++..+...+++.+..+++||+.+++..++|+++++.+..+....|
T Consensus 264 figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 264 FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 8888777777666656566788889999999999999999999999999999998877765444
No 24
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.54 E-value=3.1e-13 Score=125.72 Aligned_cols=209 Identities=15% Similarity=0.195 Sum_probs=156.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhHHhhhCCCcceeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccc
Q 018012 106 PALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPV 185 (362)
Q Consensus 106 ~~l~~~~~~~~w~~~s~~~~i~NK~il~~f~~P~n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~ 185 (362)
..++.+.-.++|..-|... ..++++++++.+|+++++..++|++++++++|+|.+..+|+++++.
T Consensus 16 ~~~~~~vPA~lY~~qn~L~---------------~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL 80 (244)
T PF04142_consen 16 DTLKLAVPALLYAIQNNLQ---------------FVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLL 80 (244)
T ss_pred HHHHHHHHHHHHHHHHHHH---------------HHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHH
Confidence 3456666666666666666 6789999999999999999999999999999999999999999999
Q ss_pred cceeEEEeecCc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHH
Q 018012 186 VIGVSMASLTEL-----------------SFNWTGFISAMISNISFTYRSIYSKKAMTDM--DSTNIYAYISIIALFVCI 246 (362)
Q Consensus 186 v~Gv~l~~~~~~-----------------s~~~~G~ilalls~l~~a~~~vl~k~~~~~~--~~~~~~~~~~~~s~i~l~ 246 (362)
++|+++....+. .....|+++.++++++.++..++.+|.+|+- +.+.-.......+.++.+
T Consensus 81 ~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~ 160 (244)
T PF04142_consen 81 VAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNL 160 (244)
T ss_pred HHHHheeecCCccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 999998843211 1135899999999999999999999999764 334333344455555555
Q ss_pred HHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCc
Q 018012 247 PPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNK 326 (362)
Q Consensus 247 p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~ 326 (362)
+.....++....+.++.+ ..+. ..|..++..++.+.+..+ .+|+.+.+.-.....+..+++.+.++++||.+
T Consensus 161 ~~~~~~~~~~~~~~g~f~---G~~~-~~~~~i~~~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~ 232 (244)
T PF04142_consen 161 LALLLSDGSAISESGFFH---GYSW-WVWIVIFLQAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFP 232 (244)
T ss_pred HHHhcccccccccCCchh---hcch-HHHHHHHHHHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 554444443333333322 2222 234445555555544444 46999999999999999999999999999999
Q ss_pred ccHhHHHHHHH
Q 018012 327 ISTQTGIGTVI 337 (362)
Q Consensus 327 ~s~~~iiG~~l 337 (362)
++....+|..+
T Consensus 233 ~s~~f~lg~~~ 243 (244)
T PF04142_consen 233 PSLSFLLGAAL 243 (244)
T ss_pred CchHHhhheec
Confidence 99999999865
No 25
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.53 E-value=4.6e-13 Score=127.79 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=148.4
Q ss_pred eeeecccchHHHHHHHH-hhHHHHHHHHHHHhccccChhh----hhhhccccceeEEEeecCcc-------cc-HHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKA-LEPFFNAAASQFILGQQLPLTL----WLSLAPVVIGVSMASLTELS-------FN-WTGFIS 206 (362)
Q Consensus 140 n~sL~~~svs~~~iiks-~~Pvft~lls~l~l~er~s~~~----~~sl~l~v~Gv~l~~~~~~s-------~~-~~G~il 206 (362)
..+.++++++.+..+.+ +.+++..+++.+++||+.+..+ +++++++++|+++.+..+.+ .+ ..|+++
T Consensus 77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~ 156 (290)
T TIGR00776 77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILL 156 (290)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHH
Confidence 67789999999999977 9999999999999999999999 99999999999888643211 33 689999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH----HHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 018012 207 AMISNISFTYRSIYSKKAMTDMDSTNIYAYISI----IALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 282 (362)
Q Consensus 207 alls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~----~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 282 (362)
+++++++|+.|.+..|+. ++|+.+..+.+.. .+.+++.+. . ...+ + .....+..++ .|
T Consensus 157 ~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~~------~-------~~~~~~~~~~-~G 218 (290)
T TIGR00776 157 LLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGH-I-LAKP------L-------KKYAILLNIL-PG 218 (290)
T ss_pred HHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHH-h-cccc------h-------HHHHHHHHHH-HH
Confidence 999999999999999986 4888877544443 333333322 0 0011 0 0112222233 66
Q ss_pred HHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHH----HHHHHHHHHHHHHHhh
Q 018012 283 MFYHLYNQLATNTLE-RVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTG----IGTVIAIAGVAAYSYI 348 (362)
Q Consensus 283 ~~~~l~~~~~~~~l~-~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~i----iG~~lil~Gv~ly~~~ 348 (362)
++..+.+.+.+...+ +.++.+.++...++|+.+++.+++++||+.++.|+ +|.++++.|+.+....
T Consensus 219 i~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 219 LMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 665555556667788 99999999999999999999999999999999999 9999999999876543
No 26
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.7e-13 Score=125.32 Aligned_cols=204 Identities=16% Similarity=0.141 Sum_probs=168.8
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecC----ccccHHHHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE----LSFNWTGFISAMISNISFT 215 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~----~s~~~~G~ilalls~l~~a 215 (362)
|.|+.|++.+..-+.|++.-+-+++.+.++-++|.++..+.+..++.+|+++.+..| .+||..|+++.-.+-++.|
T Consensus 124 n~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA 203 (367)
T KOG1582|consen 124 NGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADA 203 (367)
T ss_pred cCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987665 5689999999999999999
Q ss_pred HHHHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHHHh-cchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 018012 216 YRSIYSKKAMTD--MDSTNIYAYISIIALFVCIPPAIIV-EGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLA 292 (362)
Q Consensus 216 ~~~vl~k~~~~~--~~~~~~~~~~~~~s~i~l~p~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~ 292 (362)
+-..++++.++. -+..++.+|...+++++++.++.+. |....+... .+.. .......++-++.+++.....
T Consensus 204 ~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fc-----aehp-~~tyGy~~~~s~~gylG~~~V 277 (367)
T KOG1582|consen 204 VIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFC-----AEHP-VRTYGYAFLFSLAGYLGIVFV 277 (367)
T ss_pred HhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHH-----HhCc-HhHHHHHHHHHHHhHhhHHHH
Confidence 999999998854 4668999999999999998887765 322211110 1111 112344455555666666666
Q ss_pred HHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 293 TNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 293 ~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
...++..++.+.....+.+..+++++|+++|.+|+|.+..-|..+++.|+++--+.|
T Consensus 278 LalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 278 LALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 677899999999999999999999999999999999999999999999999866655
No 27
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.47 E-value=4.7e-14 Score=129.34 Aligned_cols=210 Identities=13% Similarity=0.198 Sum_probs=164.7
Q ss_pred eeeecc-cchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeec---Ccc--------------c--
Q 018012 140 NVSFAA-VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT---ELS--------------F-- 199 (362)
Q Consensus 140 n~sL~~-~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~---~~s--------------~-- 199 (362)
|.++++ ++++..-++|+.+++-+++++++++|+|.+..|+.|++++.+|+++.+.. |.. +
T Consensus 82 N~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~ 161 (330)
T KOG1583|consen 82 NYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFW 161 (330)
T ss_pred cceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchH
Confidence 777776 67778888899999999999999999999999999999999999987532 211 1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCC--ChHHHHHHHHHHHHHHHHHHHHHhcchhhhhc--chh-hh--hh--hhc
Q 018012 200 NWTGFISAMISNISFTYRSIYSKKAMTDM--DSTNIYAYISIIALFVCIPPAIIVEGPQLIKH--GLS-DA--IS--KVG 270 (362)
Q Consensus 200 ~~~G~ilalls~l~~a~~~vl~k~~~~~~--~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~--~~~-~~--~~--~~~ 270 (362)
..+|+.+..++-+..|...++++...+++ ++-+.++|+...++...+ +...+-..+. -+. +. .+ ...
T Consensus 162 w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Fl----f~~~div~~~~~~~~se~~~~p~~g~~ 237 (330)
T KOG1583|consen 162 WLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFL----FMGDDIVSHWRLAFKSESYLIPLLGFK 237 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHH----HhcchHHHHHHHHhcCcceeccccCcc
Confidence 13789999999999999999999888765 778999999987665543 3322111000 000 00 00 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhh
Q 018012 271 MVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 271 ~~~~~~~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~ 350 (362)
.+..|..++++++..+...-..|.+-.+++++|.++..+++..+..++|++.|.+++++..++|.++++.|.++|.-...
T Consensus 238 vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~ 317 (330)
T KOG1583|consen 238 VPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWN 317 (330)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 34557788889988888877778888999999999999999999999999999999999999999999999999987655
Q ss_pred chH
Q 018012 351 QME 353 (362)
Q Consensus 351 ~~~ 353 (362)
+.+
T Consensus 318 ~~~ 320 (330)
T KOG1583|consen 318 HPK 320 (330)
T ss_pred Ccc
Confidence 443
No 28
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.43 E-value=1.9e-12 Score=119.03 Aligned_cols=210 Identities=16% Similarity=0.176 Sum_probs=165.1
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecC----------ccccHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE----------LSFNWTGFISAMI 209 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~----------~s~~~~G~ilall 209 (362)
+.+|.+++.+.+|+++....+|+.+++..+++.+++..+|+++..+++|++++...| .+.-..|+.+.++
T Consensus 104 ~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIii 183 (372)
T KOG3912|consen 104 YVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIII 183 (372)
T ss_pred HHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHH
Confidence 788999999999999999999999999999999999999999999999998885543 3344689999999
Q ss_pred HHHHHHHHHHHHHHhhc--CCChHHHHHHHHHHHHHHHHHHHHHhcc---h-hhh------hcchhhhhhhhchH-HHHH
Q 018012 210 SNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEG---P-QLI------KHGLSDAISKVGMV-KFIS 276 (362)
Q Consensus 210 s~l~~a~~~vl~k~~~~--~~~~~~~~~~~~~~s~i~l~p~~~~~e~---~-~~~------~~~~~~~~~~~~~~-~~~~ 276 (362)
+-+.-|.+.++-+|.++ +++|.+...|.++++.+++...++.+.. + ... -..|.+.+...+.. .+..
T Consensus 184 aqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~v 263 (372)
T KOG3912|consen 184 AQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAV 263 (372)
T ss_pred HHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcCCchhHH
Confidence 99999999999998875 5789999999999997766554444321 1 110 01233333333221 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 277 DLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 277 ~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
.+...-+.--++|+......|+.|++|-.+.-.++..+.-++++....|.+...|+.|.++.+.|+++|+..-
T Consensus 264 al~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~il 336 (372)
T KOG3912|consen 264 ALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQIL 336 (372)
T ss_pred HHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222334567777777899999999999999999999999999999999999999999999999999553
No 29
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.43 E-value=8.1e-12 Score=116.75 Aligned_cols=168 Identities=10% Similarity=0.022 Sum_probs=117.2
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCccccHHHHHHHHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSI 219 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s~~~~G~ilalls~l~~a~~~v 219 (362)
..++++++++.++++..+.|+|+++++++++|||+++++++++++.++|++++...+.+.+ .++++++++|+.|.+
T Consensus 88 ~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~~i 163 (256)
T TIGR00688 88 IWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAYGL 163 (256)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999987644322222 357889999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018012 220 YSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERV 299 (362)
Q Consensus 220 l~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~~~l~~~ 299 (362)
..|+..+ .+..+.... .....++..+.....+.+.. . .......|..++..|++..+...++++.+++.
T Consensus 164 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~ 232 (256)
T TIGR00688 164 IRKALKN-TDLAGFCLE-TLSLMPVAIYYLLQTDFATV--Q-------QTNPFPIWLLLVLAGLITGTPLLAFVIAANRL 232 (256)
T ss_pred HHhhcCC-CCcchHHHH-HHHHHHHHHHHHHHhccCcc--c-------ccCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9998743 333322221 11111122111111111110 0 00111123344455556666667788889999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 018012 300 APLTHAVGNVLKRVFVIGFSILA 322 (362)
Q Consensus 300 splt~sv~~~lk~v~~i~~s~l~ 322 (362)
++.+.++..+++|+++.++++++
T Consensus 233 ~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 233 PLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 30
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.34 E-value=3.2e-11 Score=115.02 Aligned_cols=205 Identities=12% Similarity=0.167 Sum_probs=157.1
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecC-----------ccccHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE-----------LSFNWTGFISAM 208 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~-----------~s~~~~G~ilal 208 (362)
..++.+.+.+++++...+..+.|+++..+++++|.++.+|.++++.+.|++++.... .+..+.|+...+
T Consensus 110 yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl 189 (345)
T KOG2234|consen 110 YVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVL 189 (345)
T ss_pred HHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHH
Confidence 567899999999999999999999999999999999999999999999999875211 223578999999
Q ss_pred HHHHHHHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHH
Q 018012 209 ISNISFTYRSIYSKKAMTD--MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYH 286 (362)
Q Consensus 209 ls~l~~a~~~vl~k~~~~~--~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 286 (362)
.+|+..++-.++.+|.+++ .+-+.--.....++.++.+......|+.... |...+...+. ..|..++..++-+.
T Consensus 190 ~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~---~~gff~G~s~-~vw~vVl~~a~gGL 265 (345)
T KOG2234|consen 190 VACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAIN---EYGFFYGYSS-IVWLVVLLNAVGGL 265 (345)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccc---cCCccccccH-HHHHHHHHHhccch
Confidence 9999999999999999854 4444333334444555554444444444332 2122222222 33555666666555
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhch
Q 018012 287 LYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM 352 (362)
Q Consensus 287 l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~~ 352 (362)
+..++ +|+.+-+.-.....+..+++.+.|+.+||.++|....+|+.+++.++.+|+..+.++
T Consensus 266 lvs~v----~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 266 LVSLV----MKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred hHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 55544 488999998888889999999999999999999999999999999999999776655
No 31
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.34 E-value=2.5e-10 Score=106.29 Aligned_cols=200 Identities=14% Similarity=0.164 Sum_probs=151.2
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCccccHHHHHHHHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSI 219 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s~~~~G~ilalls~l~~a~~~v 219 (362)
..+.++-.+=.++.-....|++.++++.+++|||+++.+++++++..+||..-.....+++|..+.+ +++|++|..
T Consensus 90 iWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~sf~~Ygl 165 (293)
T COG2962 90 IWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----ALSFGLYGL 165 (293)
T ss_pred heecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HHHHHHHHH
Confidence 4566665666666677899999999999999999999999999999999998877777788865554 488999997
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchh-hhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018012 220 YSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQ-LIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLER 298 (362)
Q Consensus 220 l~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~~~l~~ 298 (362)
+-|+. ++|..+-+..-.+.-.+..+.+.+..+... ... .+....+..++..|..+-+--.+....-++
T Consensus 166 ~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~---------~~~~~~~~LLv~aG~vTavpL~lf~~aa~~ 234 (293)
T COG2962 166 LRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQ---------QNANSLWLLLVLAGLVTAVPLLLFAAAAKR 234 (293)
T ss_pred HHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhh---------cCCchHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 77765 678877777766654444444444443321 101 011223445666666655444444555688
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhchHH
Q 018012 299 VAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQMEE 354 (362)
Q Consensus 299 ~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~~~~ 354 (362)
.+=.+..+..+++|....+++++++||+++..+.+..+.+..|.++|..+..+.++
T Consensus 235 lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r 290 (293)
T COG2962 235 LPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTAR 290 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999988765443
No 32
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.30 E-value=5.2e-12 Score=114.82 Aligned_cols=199 Identities=11% Similarity=0.117 Sum_probs=159.0
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecC--------ccccHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE--------LSFNWTGFISAMISN 211 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~--------~s~~~~G~ilalls~ 211 (362)
..+.||++....+.+-.-..+.+++++++++|.|..+.++.+++++++|+.++...| .+....|+++.++++
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GA 175 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGA 175 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecc
Confidence 689999999999999999999999999999999999999999999999999986654 234578999999999
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 018012 212 ISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQL 291 (362)
Q Consensus 212 l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~ 291 (362)
-+||+-++..+.+.++.|..+++...++++.++..+= +++|..+...-.|.. .+...+. ..++-|+..-.
T Consensus 176 TlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~--------~i~~yl~-f~L~MFllYsl 245 (336)
T KOG2766|consen 176 TLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDS--------AIFLYLR-FALTMFLLYSL 245 (336)
T ss_pred eeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehH--------HHHHHHH-HHHHHHHHHHh
Confidence 9999999999999999999999999999999988776 555655542222211 1111122 23333333333
Q ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhh
Q 018012 292 ATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 292 ~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~ 350 (362)
.=..++..|++.+++........+++. ..||-+++|...+..+.+..|.++|+..++
T Consensus 246 ~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 246 APILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred hHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 334568888888888888888888887 778888999999999999999999965443
No 33
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.18 E-value=7.3e-11 Score=103.70 Aligned_cols=221 Identities=15% Similarity=0.124 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhCCCcceeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccce
Q 018012 109 VTGFFFFMWYFLNVIFNILNKRIYNYFPYPYNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIG 188 (362)
Q Consensus 109 ~~~~~~~~w~~~s~~~~i~NK~il~~f~~P~n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~G 188 (362)
+.+-|..+|-..|+.+ -.+|+.++.+..+.+.++.-.|+.+++++++|+|+...++++.++.+.|
T Consensus 55 ~taPF~i~Wt~aNY~Y---------------l~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~G 119 (290)
T KOG4314|consen 55 RTAPFSIFWTGANYLY---------------LLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGG 119 (290)
T ss_pred eecceEEEEecCCcHH---------------HHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCc
Confidence 3444566777767666 6779999999999999999999999999999999999999999999999
Q ss_pred eEEEeecC--ccccHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH---HHHHHHHHhcchhhhhcchh
Q 018012 189 VSMASLTE--LSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALF---VCIPPAIIVEGPQLIKHGLS 263 (362)
Q Consensus 189 v~l~~~~~--~s~~~~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i---~l~p~~~~~e~~~~~~~~~~ 263 (362)
++++++.| ....+.|+.++..|+...++|.++-|....+-+--+...+++..+++ +.....++.....+ + .|+
T Consensus 120 iVmiay~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V-E-~~q 197 (290)
T KOG4314|consen 120 IVMIAYADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV-E-HLQ 197 (290)
T ss_pred EEEEEeccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch-H-HHH
Confidence 99998765 34578999999999999999999999988665444444444444433 33222222211111 0 011
Q ss_pred hhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHH
Q 018012 264 DAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVA 343 (362)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ 343 (362)
.++... |..+...+.....+|+..-..+..+.|+..|++..+..+.-...+.++-+-..+.....|..++..|.+
T Consensus 198 -sFA~~P----WG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~Fi 272 (290)
T KOG4314|consen 198 -SFAAAP----WGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFI 272 (290)
T ss_pred -HHhhCC----chhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 011111 233333333444455544445678889999999988888889999988887889999999999999998
Q ss_pred HHHhhhhc
Q 018012 344 AYSYIKAQ 351 (362)
Q Consensus 344 ly~~~k~~ 351 (362)
+.-....+
T Consensus 273 LiiiP~d~ 280 (290)
T KOG4314|consen 273 LIIIPEDK 280 (290)
T ss_pred heecccch
Confidence 87655444
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.18 E-value=6.3e-11 Score=108.58 Aligned_cols=189 Identities=16% Similarity=0.116 Sum_probs=131.9
Q ss_pred cchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeec--------------------C-------cc
Q 018012 146 VAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT--------------------E-------LS 198 (362)
Q Consensus 146 ~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~--------------------~-------~s 198 (362)
++++.....++..++++++.++.+.++|.+..++++.+++..|+.....+ + .+
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 57888899999999999999999999999999999999999987642111 1 12
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH-HHhc---chh-hhhcchhhhhhhhchHH
Q 018012 199 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPA-IIVE---GPQ-LIKHGLSDAISKVGMVK 273 (362)
Q Consensus 199 ~~~~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~-~~~e---~~~-~~~~~~~~~~~~~~~~~ 273 (362)
..+.|....+.++++.++..+++++..++.+.. .|...++..++.+.. ...+ ... ....++. .... ..
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~ 154 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTM---FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFF---IGYP-TA 154 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCc---hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcc---cCCc-hH
Confidence 346788888888899999999999976654322 444444433333222 1111 111 1111100 0111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHH
Q 018012 274 FISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 345 (362)
Q Consensus 274 ~~~~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly 345 (362)
.+..++ .......+..+.+++.++++.++...++++++.++++++|||+++..+++|..+++.|+++|
T Consensus 155 ~~~~~~----~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 155 VWIVGL----LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHH----HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 222222 23334445667789999999999999999999999999999999999999999999998776
No 35
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.10 E-value=5.3e-09 Score=95.41 Aligned_cols=190 Identities=16% Similarity=0.184 Sum_probs=146.4
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeec---CccccHHHHHHHHHHHHHHHH
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT---ELSFNWTGFISAMISNISFTY 216 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~---~~s~~~~G~ilalls~l~~a~ 216 (362)
..|++.+|.+..-.+-.+-|+..++++ -+|..-..| +.+.+.|+.+.... ..+.|..|..+++.+..||+.
T Consensus 89 Y~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d~vw--vaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~ 162 (292)
T COG5006 89 YLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRDFVW--VALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWAL 162 (292)
T ss_pred HHHHHhccchhhhhhhhccHHHHHHHh----ccchhhHHH--HHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHH
Confidence 678999999999999999999877554 344333334 45567787665322 245688999999999999999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHH-HHHHH
Q 018012 217 RSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQ-LATNT 295 (362)
Q Consensus 217 ~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~-~~~~~ 295 (362)
|.+..||.-+..+...-..+-+.++.++.+|+.....++.+.. ..++..-+..++++...-| +..-+
T Consensus 163 YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~------------p~ll~laLgvavlSSalPYsLEmiA 230 (292)
T COG5006 163 YIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFS------------PSLLPLALGVAVLSSALPYSLEMIA 230 (292)
T ss_pred HHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcC------------hHHHHHHHHHHHHhcccchHHHHHH
Confidence 9999999866777888888889999999999887654443311 1223333444555544444 45667
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 296 LERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 296 l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
+++.++-++++..+++|.++.+.+++++||.+|+.|+.|++.++.+..-...
T Consensus 231 L~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 231 LRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999999999999988764443
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.10 E-value=1e-09 Score=90.04 Aligned_cols=124 Identities=21% Similarity=0.245 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHH-HHHHHH
Q 018012 212 ISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMF-YHLYNQ 290 (362)
Q Consensus 212 l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~l~~~ 290 (362)
++|+.+.++.|+..++.|+.....+....+.+ +++.....+..+.. ..+... +..+...+++ ..+.+.
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~ 69 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFK---------NLSPRQ-WLWLLFLGLLGTALAYL 69 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhcccccc---------CCChhh-hhhhhHhhccceehHHH
Confidence 46889999999999999999999999999998 77766666543311 111122 2223333444 466667
Q ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 291 LATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 291 ~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
+.+.+++++++...++...+.|+++.++++++++|++++.+++|+++++.|+++.+
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 70 LYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999999999999998764
No 37
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.02 E-value=1.6e-09 Score=88.92 Aligned_cols=135 Identities=21% Similarity=0.187 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 018012 203 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 282 (362)
Q Consensus 203 G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 282 (362)
-.++++++++++++-.++.|..++++||..-....++...+++..+.+....++... ..+ ...|..+.++|
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~--------~~~-~k~~lflilSG 74 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGG--------EIG-PKSWLFLILSG 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceeccc--------ccC-cceehhhhHHH
Confidence 357999999999999999999999999999999999888888877766554333211 111 23356688889
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 283 MFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 283 ~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
+..-+..++.|++++.-.+....-..-..+++++++|++++||++|..+++|++++..|..+.+
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 8888888999999988777777667778899999999999999999999999999999987654
No 38
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.87 E-value=1.9e-07 Score=89.29 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=108.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHH
Q 018012 198 SFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISD 277 (362)
Q Consensus 198 s~~~~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 277 (362)
+....|.+++++++++|+...++.|.. .++++.++..+...++.+++.+........+.... ... +... +..
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~----~~~--~~~~-~~~ 75 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT----LIQ--TPQK-IFM 75 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH----HHc--CHHH-HHH
Confidence 345689999999999999999999865 78999999999999998888776544321111000 000 1111 222
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 278 LFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 278 l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
.+..++....++.+.++.++.+++...++.....|+++.++++++++|+++..+++|+++.+.|+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 334445555667788999999999999999999999999999999999999999999999999987654
No 39
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.85 E-value=2.1e-07 Score=86.86 Aligned_cols=140 Identities=16% Similarity=0.250 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHH
Q 018012 202 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 281 (362)
Q Consensus 202 ~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (362)
.|.+++++++++|+...++.|. ..++++.++.++...++.+++.+........+.... ..........+..+...
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIE----RLKRIQKRPLILSLLLC 76 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHhCcccchHHHHHHHH
Confidence 3889999999999999999998 467999999999999998887776544322110000 00111111223345556
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 282 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 282 g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
|++....+.+.+.+++++++.+.++.....|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 66666677788888999999999999999999999999999999999999999999999987653
No 40
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.65 E-value=1e-06 Score=83.54 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHH
Q 018012 204 FISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM 283 (362)
Q Consensus 204 ~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 283 (362)
+.+.++++++++.+.++.|+..++.++. ..+....+.+.+.|+.......+ .|. ... ...+..++..++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~----~~~----~~~-~~~~~~~~~~~~ 71 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQV----GWS----RLP-ATFWLLLAISAV 71 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccC----CCC----Ccc-hhhHHHHHHHHH
Confidence 4678999999999999999887764443 45555666777777665421111 111 011 122334555666
Q ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 284 FYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 284 ~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
....+..+.+..+++.++...++.....|+++.+++++++||+++..+++|.++++.|+++...
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6677777888889999999999999999999999999999999999999999999999987654
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.52 E-value=5e-06 Score=81.75 Aligned_cols=137 Identities=13% Similarity=0.210 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHH
Q 018012 202 TGFISAMISNISFTYRSIYSKKAM-TDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFW 280 (362)
Q Consensus 202 ~G~ilalls~l~~a~~~vl~k~~~-~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~ 280 (362)
.-++.+++.-++|+.+.++.|..+ ..+++..+.+|...++.++++|+....+.....+ ..... .+..+.+
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~--------~~~~~-~~~~l~l 83 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLP--------PLSVS-ILSKIGL 83 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccC--------cchHH-HHHHHHH
Confidence 345667788899999999999988 4689999999999999999999887654321101 00111 1233444
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHH------hCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 281 VGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILA------FGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 281 ~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~------fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
.|++.++++.+.+..++++++...++..+..|+++.++++++ ++|+++..+++|+++.+.|+.+...
T Consensus 84 ~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 84 LGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 555555566677888999999999999999999999999999 6999999999999999999886543
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.44 E-value=3.9e-06 Score=78.65 Aligned_cols=189 Identities=19% Similarity=0.168 Sum_probs=136.1
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhh----hhhccccceeEEEeecCcc--------ccHHHHHH
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLW----LSLAPVVIGVSMASLTELS--------FNWTGFIS 206 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~----~sl~l~v~Gv~l~~~~~~s--------~~~~G~il 206 (362)
..|+++..+|.+-.+ ..++-+.+.++++++++|-.+...+ ++++++++|+++.+..|.+ ....|++.
T Consensus 63 f~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~ 142 (269)
T PF06800_consen 63 FKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILA 142 (269)
T ss_pred HHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHH
Confidence 457788888877777 4788899999999999997665444 4888999999998765422 12469999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHH
Q 018012 207 AMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYH 286 (362)
Q Consensus 207 alls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 286 (362)
.+++.+.|..|.++.|. .++|+++.+.=+++.-++--+.+....+. .. . ++... .-++.|++.-
T Consensus 143 Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~~~-~~-~-------~k~~~-----~nil~G~~w~ 206 (269)
T PF06800_consen 143 LLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFSKK-PF-F-------EKKSW-----KNILTGLIWG 206 (269)
T ss_pred HHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhcccc-cc-c-------ccchH-----HhhHHHHHHH
Confidence 99999999999999886 46888888887765544433333332211 11 0 11111 1244556666
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHh----HHHHHHHHHHHHHH
Q 018012 287 LYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQ----TGIGTVIAIAGVAA 344 (362)
Q Consensus 287 l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~----~iiG~~lil~Gv~l 344 (362)
.-|.+.+...++.+..+.-....+..+++.+.+++++||+-+.. .++|.++++.|..+
T Consensus 207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 66777777778888888777788889999999999999998765 46788888877653
No 43
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.23 E-value=5.6e-05 Score=72.23 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHH
Q 018012 202 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 281 (362)
Q Consensus 202 ~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (362)
.+++++++++++|+...+..|...++++|..+..+....+.++++++. ..++..+ .... .++..
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~---------~~~~----~~~~~ 67 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTV---GFPRLRQ---------FPKR----YLLAG 67 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHc---ccccccc---------ccHH----HHHHH
Confidence 467789999999999999999999999999999999999888877642 1121100 0011 12223
Q ss_pred HHHHHHHHHHHHHHh----hccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 282 GMFYHLYNQLATNTL----ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 282 g~~~~l~~~~~~~~l----~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
++....+..+.+..+ +.+++...++..++.|+++.++++++++|+++..+++|+++.+.|+++...
T Consensus 68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 333333344444433 345677778999999999999999999999999999999999999977653
No 44
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.16 E-value=0.00014 Score=69.47 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHH
Q 018012 205 ISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMF 284 (362)
Q Consensus 205 ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 284 (362)
...++-++.|+...+..|...++++|..+..+...++.++++++... +.... .. ... +......|.+
T Consensus 11 ~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~-~~~~~-~~----------~~~-~~~~~~~g~~ 77 (292)
T PRK11272 11 GALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLL-RGHPL-PT----------LRQ-WLNAALIGLL 77 (292)
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH-hCCCC-Cc----------HHH-HHHHHHHHHH
Confidence 45667789999999999998899999999999999999888877543 22111 00 011 1222333333
Q ss_pred H-HHHHHHHHHHh-hccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 285 Y-HLYNQLATNTL-ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 285 ~-~l~~~~~~~~l-~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
. ..+..+.+... +.+++...++...+.|+++.+++.+ ++|+++..+++|..+.+.|+++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 78 LLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 2 22333445555 7788888899999999999999985 7999999999999999999987754
No 45
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.14 E-value=0.00015 Score=71.25 Aligned_cols=127 Identities=13% Similarity=0.047 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 018012 211 NISFTYRSIYSKKAMTDMD-STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYN 289 (362)
Q Consensus 211 ~l~~a~~~vl~k~~~~~~~-~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 289 (362)
=.+...++++.|..++.++ |+.+..+...++.+++.+.+... .... + .+ . .....+..++..|+++....
T Consensus 58 y~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~-~-~~----~--~~~~~~~~llp~gl~~~~~~ 128 (350)
T PTZ00343 58 YALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATG-FRKI-P-RI----K--SLKLFLKNFLPQGLCHLFVH 128 (350)
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhC-CCCC-C-CC----C--CHHHHHHHHHHHHHHHHHHH
Confidence 3444556888999888899 99999999999877765554321 1100 0 00 0 01123444566666666555
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 290 QLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 290 ~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
...+.+++++++..+++...+.|+++.++++++++|+++..+++|.+++++|+.+-.
T Consensus 129 ~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 129 FGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 556677899999999999999999999999999999999999999999999998755
No 46
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.11 E-value=0.00017 Score=67.71 Aligned_cols=140 Identities=16% Similarity=0.159 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHH
Q 018012 201 WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFW 280 (362)
Q Consensus 201 ~~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~ 280 (362)
..|+++++.+-+.|+.--.+.|-+ +.+++.++..+..+.+++++.......-.++... +....+..+.....
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~-------~~~~~p~~~~~~~l 77 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELK-------QLLKQPKTLLMLAL 77 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHhCcHHHHHHHH
Confidence 469999999999999999999865 8899999999999999998887766653332111 11112223344444
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhh
Q 018012 281 VGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 348 (362)
Q Consensus 281 ~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~ 348 (362)
+++.-........++...-..+..|.+..++|.+.+++|.++++|+++..|++..+++..|+..-.+.
T Consensus 78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 44443333334466778888999999999999999999999999999999999999999998755443
No 47
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.11 E-value=0.00012 Score=61.51 Aligned_cols=122 Identities=14% Similarity=0.012 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHH
Q 018012 202 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 281 (362)
Q Consensus 202 ~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (362)
.|+++.+++.++.+...++.|+.+++....+.... .. ..... ..+ | ... +...
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~~-----~~~~~-~~~-p---------------~~~----i~lg 54 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-FI-----AALLA-FGL-A---------------LRA----VLLG 54 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-HH-----HHHHH-Hhc-c---------------HHH----HHHH
Confidence 47889999999999999999998876544332111 00 00000 000 0 001 1112
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHH--HhCCcccHhHHHHHHHHHHHHHHHHhhhh
Q 018012 282 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIL--AFGNKISTQTGIGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 282 g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l--~fge~~s~~~iiG~~lil~Gv~ly~~~k~ 350 (362)
-+++.+..+++..++++.+.....-..++..+...+.++. +|||++|+.+++|++++++|+++.+..++
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 2233333446666778887777665556666667667774 89999999999999999999999875443
No 48
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.10 E-value=0.00012 Score=70.07 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHH
Q 018012 204 FISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGM 283 (362)
Q Consensus 204 ~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 283 (362)
.+++++++++|+...+..|...++++|..+..+...++.+.++++.. .++. ... .+...|+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~---~~~~------------~~~----~~~~~g~ 66 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVA---RPKV------------PLN----LLLGYGL 66 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc---CCCC------------chH----HHHHHHH
Confidence 35688999999999999999889999999999999887766554321 1110 000 1122233
Q ss_pred HHH-HHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 284 FYH-LYNQLATNTLER-VAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 284 ~~~-l~~~~~~~~l~~-~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
+.. .+..+.+..+++ .++...++...+.|+++.++++++++|+++..+++|.++.+.|+.+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 67 TISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 222 222233445566 4566778788899999999999999999999999999999999877653
No 49
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.07 E-value=1.1e-05 Score=77.52 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=50.7
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEe
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 193 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~ 193 (362)
..|+.+.|.+..+.+.++.-++.++++.+++|||+++..+.|.++++.|+.++.
T Consensus 68 ~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 68 FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 667999999999999999999999999999999999999999999999987653
No 50
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.02 E-value=0.00012 Score=67.98 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 018012 215 TYRSIYSKKAMT-DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLAT 293 (362)
Q Consensus 215 a~~~vl~k~~~~-~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~ 293 (362)
+.-.+..|..++ ..++.....+....+.+++.+..... .+ .......+...++...+.+.+.+
T Consensus 2 g~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~--~~--------------~~~~~~~~~~~~~~~~l~~~~~~ 65 (260)
T TIGR00950 2 GTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR--PP--------------LKRLLRLLLLGALQIGVFYVLYF 65 (260)
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc--cC--------------HhHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777664 57888989999988888877654322 10 01122334444555567777888
Q ss_pred HHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 294 NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 294 ~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
.+++++++...++...+.|+++.+++.++++|++++.+++|+++++.|+.+...
T Consensus 66 ~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 66 VAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 899999999999999999999999999999999999999999999999887653
No 51
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.01 E-value=4.1e-06 Score=68.57 Aligned_cols=58 Identities=22% Similarity=0.445 Sum_probs=53.3
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecCcc
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELS 198 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~s 198 (362)
..++++.+ +...++.++.|+|+++++.+++|||+++.++++++++++|++++..+|.+
T Consensus 53 ~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 53 FYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 66799999 68889999999999999999999999999999999999999998877654
No 52
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.97 E-value=0.00037 Score=66.67 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 018012 213 SFTYRSIYSKKAMTD-MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQL 291 (362)
Q Consensus 213 ~~a~~~vl~k~~~~~-~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~ 291 (362)
+...++++.|..+++ ..|..+..+....+.+.+.+.... ...+. ....... +..++..|++...+...
T Consensus 13 ~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~-~~~~~~~g~~~~~~~~~ 81 (302)
T TIGR00817 13 LNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSS-GLPKR---------LKISSAL-LKLLLPVAIVHTIGHVT 81 (302)
T ss_pred HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHh-CCCCC---------CCCCHHH-HHHHHHHHHHHHHHHHH
Confidence 334456788888887 457777777777776665544211 11100 0011111 33345556666566667
Q ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 292 ATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 292 ~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
.+..++++++..+++...+.|+++.++++++++|+++..+++|.++++.|+.+..
T Consensus 82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 7888999999999999999999999999999999999999999999999997653
No 53
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.91 E-value=0.0004 Score=56.69 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=57.3
Q ss_pred HHHHHHHH-HHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhh
Q 018012 279 FWVGMFYH-LYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 279 ~~~g~~~~-l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~ 350 (362)
+..|++.. ..+...+.+++..++ ..++...+.|+++.+++.++++|+++..+++|.++++.|+.+..+...
T Consensus 38 ~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 38 ILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 33344443 455566677788885 667888899999999999999999999999999999999998876554
No 54
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.76 E-value=0.00047 Score=65.85 Aligned_cols=132 Identities=13% Similarity=0.090 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 018012 203 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 282 (362)
Q Consensus 203 G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 282 (362)
|++++++++++|+...+..|+.. +.++.++.. ..++.+++.........+.. +....+..-++.|
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~~--~~~g~l~~~~~~~~~~~~~~------------~~~~~~~~g~l~G 66 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTLG--TTFGALILSIAIAIFVLPEF------------WALSIFLVGLLSG 66 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHHH--HHHHHHHHHHHHHHHhCCcc------------cccHHHHHHHHHH
Confidence 67899999999999999999875 666655542 33343433333332221110 1122333344556
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHH-HHHHHHHHHHHHHhCCcccHhH----HHHHHHHHHHHHHHHhhh
Q 018012 283 MFYHLYNQLATNTLERVAPLTHAVGNV-LKRVFVIGFSILAFGNKISTQT----GIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 283 ~~~~l~~~~~~~~l~~~splt~sv~~~-lk~v~~i~~s~l~fge~~s~~~----iiG~~lil~Gv~ly~~~k 349 (362)
+.-...|+..+.++++++........+ +..++..+.+.++|||+.+..+ ++|.++++.|+++....+
T Consensus 67 ~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 67 AFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 666667778888888887766644444 7888999999999999999999 999999999999886654
No 55
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0004 Score=66.05 Aligned_cols=207 Identities=18% Similarity=0.158 Sum_probs=112.8
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeec---Cccc-c---------HHHHH-
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT---ELSF-N---------WTGFI- 205 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~---~~s~-~---------~~G~i- 205 (362)
..|+.+.|.+..+.+.+++.++.++++.++++|++++.-.++.+++++|-.++..- |.+. + -.+++
T Consensus 82 FaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fli 161 (335)
T KOG2922|consen 82 FAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLV 161 (335)
T ss_pred HHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHH
Confidence 67899999999999999999999999999999999999999999999998666321 1110 0 01211
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHH
Q 018012 206 SAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFY 285 (362)
Q Consensus 206 lalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 285 (362)
++.+-.+...+-..+.| ++....+++.|..+.+++-.+-..-.-.....+...++.. .+...+..|..++....+.
T Consensus 162 y~~~iil~~~il~~~~~---p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~-~ql~~~~ty~~~l~~~~~~ 237 (335)
T KOG2922|consen 162 YVIIIILIVLILIFFYA---PRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN-NQLFYPLTWIFLLVVATCV 237 (335)
T ss_pred HHHHHHHHHHHHheeec---ccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC-cccccHHHHHHHHHHHHHH
Confidence 11111111111111111 2334556677777666554221110000000000000000 0111122333333333322
Q ss_pred HHHHHHHHHHhhccCh-HHHHHHHHHHHHHHHHHHHHHhCCcc--c----HhHHHHHHHHHHHHHHHHhhhh
Q 018012 286 HLYNQLATNTLERVAP-LTHAVGNVLKRVFVIGFSILAFGNKI--S----TQTGIGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 286 ~l~~~~~~~~l~~~sp-lt~sv~~~lk~v~~i~~s~l~fge~~--s----~~~iiG~~lil~Gv~ly~~~k~ 350 (362)
..+-..--++++...+ +...+...+-.-+++..|.++|.|-- + ...+.|...++.|+++.+..|.
T Consensus 238 ~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd 309 (335)
T KOG2922|consen 238 STQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKD 309 (335)
T ss_pred HHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecc
Confidence 2222222334443333 33345555667788999999998753 3 3457788889999988765443
No 56
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.54 E-value=0.0052 Score=57.30 Aligned_cols=140 Identities=17% Similarity=0.143 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHH
Q 018012 201 WTGFISAMISNISFTYRSIYSKKAMTD-MDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLF 279 (362)
Q Consensus 201 ~~G~ilalls~l~~a~~~vl~k~~~~~-~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (362)
..+....++.++.++......|...++ .+......+....+.+...+... .+.... . .... ..+..++
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-------~~~~--~~~~~~~ 74 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LEPRGL-R-------PALR--PWLLLLL 74 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhcccc-c-------cccc--chHHHHH
Confidence 457778888889999999999888766 45555555566555555222221 111000 0 0000 1223345
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHH-HHhCCcccHhHHHHHHHHHHHHHHHHhhhhc
Q 018012 280 WVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI-LAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 280 ~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~-l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~ 351 (362)
..++.....+.+.+..++++++...++.....|+++.+++. ++++|+++..+++|..+.+.|+++.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 55555666667778889999999999999999999999997 7779999999999999999999888765543
No 57
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.49 E-value=0.0043 Score=60.53 Aligned_cols=203 Identities=12% Similarity=0.015 Sum_probs=123.5
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhcccc-------ChhhhhhhccccceeEEEee----cCc---------c
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQL-------PLTLWLSLAPVVIGVSMASL----TEL---------S 198 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~-------s~~~~~sl~l~v~Gv~l~~~----~~~---------s 198 (362)
-.+++|+.+|....+ ..++-++..++..++++|=. .....++++++++|+++.+. .|. .
T Consensus 91 ~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~ 170 (345)
T PRK13499 91 GLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKMGIKKAEEF 170 (345)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Confidence 578899999998877 67889999999999988633 23567888999999988866 332 1
Q ss_pred ccHHHHHHHHHHHHHHHHHH-------HHHHHhh-cCCChHHHHHHHHH---HHHHHHH-HHHHHh-cchhhhhcchhhh
Q 018012 199 FNWTGFISAMISNISFTYRS-------IYSKKAM-TDMDSTNIYAYISI---IALFVCI-PPAIIV-EGPQLIKHGLSDA 265 (362)
Q Consensus 199 ~~~~G~ilalls~l~~a~~~-------vl~k~~~-~~~~~~~~~~~~~~---~s~i~l~-p~~~~~-e~~~~~~~~~~~~ 265 (362)
....|++.++++.+.++.|+ ...+... .+.++.....-+.. .+.++.- .+.... -..+ .+.+.
T Consensus 171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~----~~~~~ 246 (345)
T PRK13499 171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNK----DLSLK 246 (345)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----Ccccc
Confidence 23589999999999999999 4333311 23455433333332 2222221 111110 0100 11000
Q ss_pred hhhhc-----hHHHHHHHHHHHHHHHHHHHHHHHHhhccChH----HHHHHHHHHHHHHHHHHHHHhCCccc------Hh
Q 018012 266 ISKVG-----MVKFISDLFWVGMFYHLYNQLATNTLERVAPL----THAVGNVLKRVFVIGFSILAFGNKIS------TQ 330 (362)
Q Consensus 266 ~~~~~-----~~~~~~~l~~~g~~~~l~~~~~~~~l~~~spl----t~sv~~~lk~v~~i~~s~l~fge~~s------~~ 330 (362)
.+... ... ...-.+.|+.-++.++..+..-.+.+.. .+.+...+..+++.+.++ ++||.-+ ..
T Consensus 247 ~~~~~~~~~~~~n-~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~ 324 (345)
T PRK13499 247 ADFSLAKPLLITN-VLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRV 324 (345)
T ss_pred hhccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhH
Confidence 01111 111 1122445566666666555555555322 233555777789999999 4999877 66
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 018012 331 TGIGTVIAIAGVAAYSYI 348 (362)
Q Consensus 331 ~iiG~~lil~Gv~ly~~~ 348 (362)
.++|.++++.|..+..+.
T Consensus 325 l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 325 LSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 799999999998876554
No 58
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.45 E-value=9.7e-05 Score=60.44 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=50.1
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEe
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 193 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~ 193 (362)
..+++.+|++.+..+-++.++++++++++++||++++.++++++++++|+++++
T Consensus 55 ~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 55 LLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999999987654
No 59
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.43 E-value=0.0024 Score=61.25 Aligned_cols=126 Identities=15% Similarity=0.170 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhcC--CC--hHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHH
Q 018012 214 FTYRSIYSKKAMTD--MD--STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYN 289 (362)
Q Consensus 214 ~a~~~vl~k~~~~~--~~--~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 289 (362)
+..+.+++++..++ .+ +..+.+.+.....+...+........+. +... +......+++.++..
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~ 78 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS---------RKIP----LKKYAILSFLFFLAS 78 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC---------CcCh----HHHHHHHHHHHHHHH
Confidence 33456777777643 23 5566666666666555544333220110 0111 222344456666777
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhch
Q 018012 290 QLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM 352 (362)
Q Consensus 290 ~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~~ 352 (362)
.+...++++++--++.+....|++.+++++++++|++.+..++++.+++..|+.++...+.++
T Consensus 79 ~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 79 VLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred HHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence 778888899999999999999999999999999999999999999999999999988776543
No 60
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.39 E-value=6.8e-05 Score=61.06 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=50.1
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEE
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 192 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~ 192 (362)
+.++++++++..+++..++|+++++++++++||++++.++++++++++|+.++
T Consensus 72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999997654
No 61
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.38 E-value=0.0024 Score=52.20 Aligned_cols=59 Identities=17% Similarity=0.066 Sum_probs=48.1
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 288 YNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 288 ~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
..+++..++++.+.-.......+.++.+.+.|+++|||++++.+++|+++++.|+.+..
T Consensus 50 ~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 50 AMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33455556677766665555559999999999999999999999999999999997754
No 62
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.27 E-value=0.011 Score=56.50 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHH
Q 018012 201 WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFW 280 (362)
Q Consensus 201 ~~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~ 280 (362)
..|..++++++++++...+..|...+++++..+.++...++.++++++..... ... .... +...+.
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~-~~~------------~~~~-~~~~~~ 76 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWR-LRF------------AKEQ-RLPLLF 76 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHh-ccC------------CHHH-HHHHHH
Confidence 57899999999999999999999988899999999999999888876542111 000 0011 112333
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHH
Q 018012 281 VGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 345 (362)
Q Consensus 281 ~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly 345 (362)
.|++....+.+.+..++++++...++.....|+++.+++. |+.. ...+.++.+.|+.+.
T Consensus 77 ~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li 135 (293)
T PRK10532 77 YGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFL 135 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHhee
Confidence 4444555666778888999999888988899999887762 3332 334455556665543
No 63
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.18 E-value=0.0012 Score=61.67 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhc
Q 018012 276 SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 276 ~~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~ 351 (362)
..+...++++.+.|...|..++..+|.++.+....|.+++.++++++++++++..||++..+.+.|+.+.......
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3466778899999999999999999999999999999999999999999999999999999999999988766544
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.18 E-value=0.0062 Score=59.31 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 279 FWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 279 ~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
++.+++-...|+....+.++|+-....+..+...++++++++++++++.++.+++|+++++.|+.+.....
T Consensus 83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 34478888999999999999999999999999999999999999999999999999999999988766554
No 65
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.08 E-value=0.023 Score=48.29 Aligned_cols=130 Identities=12% Similarity=0.156 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 018012 204 FISAMISNISFTYRSIYSKKAMTDMD-STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 282 (362)
Q Consensus 204 ~ilalls~l~~a~~~vl~k~~~~~~~-~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 282 (362)
.++++++.++-+++..+.-++-++.+ ++.-...+...+++.+....++.+.++... .... .+| ....|
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~------~~~~---p~w--~~lGG 71 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLAS------LSSV---PWW--AYLGG 71 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccch------hccC---ChH--HhccH
Confidence 56788888888999988888877775 999999999999999988888776542211 1111 122 34477
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHH-HHHHHHHHHHH-Hh---CCcccHhHHHHHHHHHHHHHH
Q 018012 283 MFYHLYNQLATNTLERVAPLTHAVGNVL-KRVFVIGFSIL-AF---GNKISTQTGIGTVIAIAGVAA 344 (362)
Q Consensus 283 ~~~~l~~~~~~~~l~~~splt~sv~~~l-k~v~~i~~s~l-~f---ge~~s~~~iiG~~lil~Gv~l 344 (362)
+++..+-.+....+.+.++....+.... +-+.++++|.+ +| .+++++..++|.++++.|+++
T Consensus 72 ~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 72 LLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 7777777777778899999888665443 55566677775 33 467999999999999999863
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.88 E-value=0.033 Score=54.45 Aligned_cols=138 Identities=16% Similarity=0.120 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH--HHHHHHHHH-hcchhhhhcchhhhhhhhchHHHHHH
Q 018012 201 WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIAL--FVCIPPAII-VEGPQLIKHGLSDAISKVGMVKFISD 277 (362)
Q Consensus 201 ~~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~--i~l~p~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~ 277 (362)
..|+++++++++|++.+.+-+|+ .++.| ++.+ +- ..+. -++.|+... ...+.. .+.+...+... +..
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w~-wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f-----~~~~~~~~~~~-~~~ 75 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKWS-WETM-WS-VGGIFSWLILPWLIAALLLPDF-----WAYYSSFSGST-LLP 75 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCCc-hhHH-HH-HHHHHHHHHHHHHHHHHHhhhH-----HHHHHhcCHHH-HHH
Confidence 57999999999999999999998 34443 3333 22 1111 112221111 111221 12222233322 334
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHHHHHHhCCcc-------cHhHHHHHHHHHHHHHHHHhh
Q 018012 278 LFWVGMFYHLYNQLATNTLERVA-PLTHAVGNVLKRVFVIGFSILAFGNKI-------STQTGIGTVIAIAGVAAYSYI 348 (362)
Q Consensus 278 l~~~g~~~~l~~~~~~~~l~~~s-plt~sv~~~lk~v~~i~~s~l~fge~~-------s~~~iiG~~lil~Gv~ly~~~ 348 (362)
-++.|++--+-|...+..+++.+ +++..+..-+.-+...+++.+++||-- ...-.+|.++++.|+.+-.++
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666677777765 445567777888999999999998643 245789999999999998874
No 67
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.81 E-value=0.063 Score=52.01 Aligned_cols=140 Identities=22% Similarity=0.222 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----CCChHHHHHHHHHHHHHHHHHHHHHhcch---hhhhcchhhhhhhhchHHHHH
Q 018012 204 FISAMISNISFTYRSIYSKKAMT----DMDSTNIYAYISIIALFVCIPPAIIVEGP---QLIKHGLSDAISKVGMVKFIS 276 (362)
Q Consensus 204 ~ilalls~l~~a~~~vl~k~~~~----~~~~~~~~~~~~~~s~i~l~p~~~~~e~~---~~~~~~~~~~~~~~~~~~~~~ 276 (362)
++..+...+-++.+....|...+ ++.+.+..+..-+.-.+++....+..+.. +... .+...+.. .+.. ..
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~-~l~~~i~~-~~~~-~l 93 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLK-SLSKEILA-APRE-TL 93 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh-hcCHHHHh-ChHH-HH
Confidence 34445555556666666665442 36788888888888888887766654422 1111 11111111 1101 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 277 DLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 277 ~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
-+..-++++.+.|...|..+...+|.|+.+...+|...+.++++++++++++..||...++.+.|+.+..
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 4566678899999988999999999999999999999999999999999999999999999999998877
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.72 E-value=0.025 Score=46.18 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=45.4
Q ss_pred HHhhccC-hHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 294 NTLERVA-PLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 294 ~~l~~~s-plt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
+++++.+ .+.+++-.-+-.+.+.+.++++|||++++.+++|+++++.|+...+...
T Consensus 49 ~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3345543 3445776667888999999999999999999999999999999987654
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.72 E-value=0.0093 Score=49.41 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=45.6
Q ss_pred HHhhccC-hHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhh
Q 018012 294 NTLERVA-PLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 294 ~~l~~~s-plt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~ 350 (362)
+++++.. .+.+++-.-+-.+.+.+.++++|||++++.+++|+++++.|++..+...+
T Consensus 49 ~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 49 FAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 3345443 34456666678889999999999999999999999999999998876553
No 70
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.051 Score=43.87 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=45.3
Q ss_pred hhccC-hHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 296 LERVA-PLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 296 l~~~s-plt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
+|+.. .+.|++-.-.-.+.+.+.++++|||++++.+++|+.+++.|+...+..+
T Consensus 51 lk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 51 LKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 45543 3456887778889999999999999999999999999999999877543
No 71
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.52 E-value=0.051 Score=43.95 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=44.6
Q ss_pred hhccC-hHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhh
Q 018012 296 LERVA-PLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 348 (362)
Q Consensus 296 l~~~s-plt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~ 348 (362)
+++.+ .+.+++-.-+-.+.+.+.++++|||++++.+++|+.+++.|+...+..
T Consensus 50 l~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 50 MKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 45443 455688777888999999999999999999999999999999887543
No 72
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.44 E-value=0.00091 Score=55.43 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=50.3
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEee
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 194 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~ 194 (362)
..+++...+|-...+..++|+++++++++++|||++..+++|++++++|+++++.
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 5678888888888899999999999999999999999999999999999998764
No 73
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.44 E-value=0.15 Score=41.47 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=43.1
Q ss_pred hhccC-hHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 296 LERVA-PLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 296 l~~~s-plt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
+++.+ .+.+++-.-+-.+.+.+.++++|||++++.+++|+++++.|+...+
T Consensus 56 l~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 56 VKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 45543 3456887778889999999999999999999999999999998764
No 74
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.15 E-value=0.0092 Score=55.81 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 018012 203 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 282 (362)
Q Consensus 203 G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 282 (362)
|++.+++++++++...+=.|+. +.-|++-+..+++....+..+...++.+.+++.+. -.+.|
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~-----------------amlgG 62 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILGFPPFYPW-----------------AMLGG 62 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcCCCcceeH-----------------HHhhh
Confidence 6788999999999999888876 55688777777776666655555555554443211 11222
Q ss_pred HHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHHHHH-HhCCc-----ccHhHHHHHHHHHHHHHHHHhhhhch
Q 018012 283 MFYHLYNQLATNTLERVA-PLTHAVGNVLKRVFVIGFSIL-AFGNK-----ISTQTGIGTVIAIAGVAAYSYIKAQM 352 (362)
Q Consensus 283 ~~~~l~~~~~~~~l~~~s-plt~sv~~~lk~v~~i~~s~l-~fge~-----~s~~~iiG~~lil~Gv~ly~~~k~~~ 352 (362)
.+...-|.+..-+++..+ ++...+=+..+-+..-..+-+ +||.+ -.+.+++|++++++|..+|...|.+.
T Consensus 63 ~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 63 ALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 222223333333333332 122223333333444444432 56543 36789999999999999999887655
No 75
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.05 E-value=0.0097 Score=47.97 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=48.6
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEee
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 194 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~ 194 (362)
..+++++|++.+-.+ ...-.+.+.+.++++++|+.+..+++++.++++|++....
T Consensus 48 s~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 48 SLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 456899999987776 7889999999999999999999999999999999876543
No 76
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=95.98 E-value=0.0075 Score=50.67 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=50.4
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHH--HhccccChhhhhhhccccceeEEEeec
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQF--ILGQQLPLTLWLSLAPVVIGVSMASLT 195 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l--~l~er~s~~~~~sl~l~v~Gv~l~~~~ 195 (362)
+.+++..+++.+..+-+..++++++.++. +++|++++.+++|++++++|+.++...
T Consensus 66 ~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 66 LKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 67799999999999999999888888885 899999999999999999999887643
No 77
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.98 E-value=0.0079 Score=49.08 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=49.3
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEee
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 194 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~ 194 (362)
..+++++|++.+..+ ....-+.+.++++++++|++++.+++++.++++|+++...
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456889999998888 6689999999999999999999999999999999987744
No 78
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=95.95 E-value=0.0096 Score=49.32 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=49.3
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEee
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 194 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~ 194 (362)
..++++++++.+..+ ....-+.+++++.++++|++++.+++++.++++|++++..
T Consensus 48 s~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 48 SFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 456889999998887 6799999999999999999999999999999999987744
No 79
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.85 E-value=0.011 Score=48.09 Aligned_cols=53 Identities=19% Similarity=0.319 Sum_probs=47.3
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEE
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 192 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~ 192 (362)
..+++++|++.+-.+ ...-.+.+.+++.+++||++++.+++++.+++.|++..
T Consensus 53 s~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 53 SQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 567889999988777 67889999999999999999999999999999998754
No 80
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.71 E-value=0.014 Score=47.12 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=48.1
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEe
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS 193 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~ 193 (362)
..+++.+|++.+..+ ...-.+.+.+++++++||++++.+++++.++++|++...
T Consensus 47 s~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 47 AWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 456888999988777 668999999999999999999999999999999987764
No 81
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.00043 Score=63.49 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=128.6
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhh----hhhhccccceeEEEeecCc--------cccHHHHHH
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTL----WLSLAPVVIGVSMASLTEL--------SFNWTGFIS 206 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~----~~sl~l~v~Gv~l~~~~~~--------s~~~~G~il 206 (362)
..|.++..||.+..+ ..++-+-+-+++++.++|-.+..+ ..+++++++|+.+.++.|. ++--.|+..
T Consensus 77 fka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~ 156 (288)
T COG4975 77 FKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVI 156 (288)
T ss_pred hhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheee
Confidence 567888888888777 567888889999999999776554 3678899999999987663 122468888
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHH
Q 018012 207 AMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYH 286 (362)
Q Consensus 207 alls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 286 (362)
.+.|.+.|..|.++.+.. ++|.++...-++....+.-+.+...-+.... . .....-...|++--
T Consensus 157 L~iSt~GYv~yvvl~~~f--~v~g~saiLPqAiGMv~~ali~~~~~~~~~~---------~-----K~t~~nii~G~~Wa 220 (288)
T COG4975 157 LLISTLGYVGYVVLFQLF--DVDGLSAILPQAIGMVIGALILGFFKMEKRF---------N-----KYTWLNIIPGLIWA 220 (288)
T ss_pred eeeeccceeeeEeeeccc--cccchhhhhHHHHHHHHHHHHHhhcccccch---------H-----HHHHHHHhhHHHHH
Confidence 889999999999988876 4677666666554322222222221111111 1 11122233455444
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhH----HHHHHHHHHHHHHHHhhh
Q 018012 287 LYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQT----GIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 287 l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~----iiG~~lil~Gv~ly~~~k 349 (362)
.-|...+.+-.+.+-.|.=....+--+.+++.++++++|+-|..+ ++|+++++.|..+....|
T Consensus 221 ~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 221 IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 555555555555555444334446678889999999999998776 578888888877665444
No 82
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=95.60 E-value=0.021 Score=48.47 Aligned_cols=70 Identities=7% Similarity=0.085 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHhhhCCCcceeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccc
Q 018012 108 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVI 187 (362)
Q Consensus 108 l~~~~~~~~w~~~s~~~~i~NK~il~~f~~P~n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~ 187 (362)
..+...+.+|++.|... ...++++++-.++++.....+++.+++.++++|+++..+++|+++.++
T Consensus 82 ~~~~~~~~~~~~~n~~~---------------f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~ 146 (153)
T PF03151_consen 82 FLLILSGLLAFLYNLSS---------------FLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALV 146 (153)
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHH
Confidence 33444566666666655 556889999999999999999999999999999999999999999999
Q ss_pred eeEEE
Q 018012 188 GVSMA 192 (362)
Q Consensus 188 Gv~l~ 192 (362)
|+.+-
T Consensus 147 G~~~Y 151 (153)
T PF03151_consen 147 GVLLY 151 (153)
T ss_pred HHhee
Confidence 98764
No 83
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.07 E-value=0.91 Score=44.08 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHH
Q 018012 201 WTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFW 280 (362)
Q Consensus 201 ~~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~ 280 (362)
..|+++..+++++.+.+.+=.||. ++.+-.++-...++++-++.=+.......|+..+ .+...+...++.. .+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~-----i~~~~~~~~l~~~-~l 78 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFS-----IYSATPASTLFWT-FL 78 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH-----HHHhCChhHHHHH-HH
Confidence 579999999999999999988886 6666555555566665554433333344444322 1122222222222 22
Q ss_pred HHHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHHHHHHhC-------CcccHhHHHHHHHHHHHHHHHHhhhh
Q 018012 281 VGMFYHLYNQLATNTLERVA-PLTHAVGNVLKRVFVIGFSILAFG-------NKISTQTGIGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 281 ~g~~~~l~~~~~~~~l~~~s-plt~sv~~~lk~v~~i~~s~l~fg-------e~~s~~~iiG~~lil~Gv~ly~~~k~ 350 (362)
.|++--+-+...=..+++.+ ++..++..-+..++..++--++.| ++-....++|.+++++|+.+..++-.
T Consensus 79 ~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 79 FGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred HHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 22221111111112234443 555666666666666666555543 33345789999999999998887743
No 84
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.04 E-value=1.3 Score=38.10 Aligned_cols=137 Identities=8% Similarity=0.095 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHH
Q 018012 201 WTGFISAMISNISFTYRSIYSKKAMTDMD-STNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLF 279 (362)
Q Consensus 201 ~~G~ilalls~l~~a~~~vl~k~~~~~~~-~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (362)
+...++++++.++...+.-+.-++.+..+ |.--...+...+.+.+....++.+.... +. .... ..+| ..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~----~a-~~~~---~pwW--~~ 73 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPG----LA-AVAS---APWW--AW 73 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCc----hh-hccC---CchH--HH
Confidence 46677888888888888888888776665 6666666666667777766665443221 11 1111 1112 23
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHH-HHHHHHHHHHHHHHHHhC----CcccHhHHHHHHHHHHHHHHHHh
Q 018012 280 WVGMFYHLYNQLATNTLERVAPLTHAV-GNVLKRVFVIGFSILAFG----NKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 280 ~~g~~~~l~~~~~~~~l~~~splt~sv-~~~lk~v~~i~~s~l~fg----e~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
..|+++..+-........+.++.++.. .-.-+-+.++++|.+=+. .+++...++|+++++.|+++...
T Consensus 74 ~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 74 IGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred HccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 345555555555555567887777644 444455666666665433 56899999999999999666543
No 85
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=94.66 E-value=0.32 Score=46.73 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHH
Q 018012 200 NWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLF 279 (362)
Q Consensus 200 ~~~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (362)
..+|..++++++++.+...+++|+...+.+....- +..+ + .+......+|..++
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~------------------~~~~----~----~~~l~~~~W~~G~~ 58 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLR------------------AGSG----G----RSYLRRPLWWIGLL 58 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------------------ccch----h----hHHHhhHHHHHHHH
Confidence 46899999999999999999999875432220000 0000 0 00011122233333
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 280 WVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 280 ~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
..+ .+...++. ++...+....+-.+.+.-++..+++..++||+++...++|.++++.|..+.-
T Consensus 59 ~~~-~g~~~~~~---Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 59 LMV-LGEILNFV---ALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHh-cchHHHHH---HHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 222 22233333 3355555566777888899999999999999999999999999999987654
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=93.65 E-value=0.11 Score=40.85 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=25.5
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhhhhhcc
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAP 184 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~~sl~l 184 (362)
..++++++++.+..+ ..+..+.+.+++.++++|++++.+++++.+
T Consensus 47 ~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 47 SLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 567889999988766 679999999999999999999999999865
No 87
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.41 E-value=0.11 Score=42.43 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=46.5
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEE
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 192 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~ 192 (362)
...+...++|.+..+ .++.=+||++.++++.+|..++..++|+++++.|+.+.
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 455888888888888 59999999999988888888999999999999999875
No 88
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=92.59 E-value=0.62 Score=36.59 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=25.7
Q ss_pred HHHHhhccCh-HHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHH
Q 018012 292 ATNTLERVAP-LTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIA 338 (362)
Q Consensus 292 ~~~~l~~~sp-lt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~li 338 (362)
...++++.+- +.+.+..-+-.+.+.+.|+++|||++|+.+++|+.++
T Consensus 46 l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 46 LSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3344566543 3456666678899999999999999999999999875
No 89
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=92.06 E-value=1.3 Score=41.76 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChHHH-HHHHHHHHHHHHHHHHHHhCCcccHhH----HHHHHHHHHHHHHHHhhhhc
Q 018012 277 DLFWVGMFYHLYNQLATNTLERVAPLTH-AVGNVLKRVFVIGFSILAFGNKISTQT----GIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 277 ~l~~~g~~~~l~~~~~~~~l~~~splt~-sv~~~lk~v~~i~~s~l~fge~~s~~~----iiG~~lil~Gv~ly~~~k~~ 351 (362)
.-+++|++-.+-+...|...++.+-... =+..-++-+...+.++++|||.-+..+ .++.++++.|+++-++.+++
T Consensus 47 ~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~ 126 (269)
T PF06800_consen 47 VAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK 126 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 3455666655556556655555543222 233346778899999999999876554 45888899999998887766
Q ss_pred hH
Q 018012 352 ME 353 (362)
Q Consensus 352 ~~ 353 (362)
++
T Consensus 127 ~~ 128 (269)
T PF06800_consen 127 SD 128 (269)
T ss_pred cc
Confidence 54
No 90
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=91.86 E-value=0.056 Score=50.53 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 293 TNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 293 ~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
|++..+.+-....+.....|++++++++++++|+.|..+.+|..+.+.|+.+..
T Consensus 115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred HHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 333455555555666678999999999999999999999999999999997654
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=91.56 E-value=0.17 Score=49.46 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhc
Q 018012 276 SDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 276 ~~l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~ 351 (362)
...++.|.+-|+.|+..-.++++++....++..+....+++.++.++-+|++|+...++..+.++|+++.+..+.+
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence 3455567778888888888899999999999999999999999999999999999999999999999887766543
No 92
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.85 E-value=2.3 Score=40.64 Aligned_cols=128 Identities=18% Similarity=0.174 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhhc--------CC-ChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 018012 212 ISFTYRSIYSKKAMT--------DM-DSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 282 (362)
Q Consensus 212 l~~a~~~vl~k~~~~--------~~-~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 282 (362)
..+-.+.+++++.++ ++ ++.-+.+.+.+.+.+.. .....++.- .... ...+.-....+
T Consensus 24 ~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s---~~~l~~~k~-------~~~~---~apl~~y~~is 90 (327)
T KOG1581|consen 24 ATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVS---YAMLKWWKK-------ELSG---VAPLYKYSLIS 90 (327)
T ss_pred HHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHH---HHHHhcccc-------cCCC---CCchhHHhHHH
Confidence 455667888888873 22 45555666666655554 222222111 0011 11123334445
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhch
Q 018012 283 MFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQM 352 (362)
Q Consensus 283 ~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~~ 352 (362)
+...+..++.|-+++++|=.|..++-+.|-+-+++++.++.+.+.++...+-..++-+|+.++...+..+
T Consensus 91 ~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 91 FTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 6666777888899999999999999999999999999999999999999999999999998887775443
No 93
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=90.35 E-value=0.19 Score=46.75 Aligned_cols=53 Identities=25% Similarity=0.428 Sum_probs=48.9
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEE
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 192 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~ 192 (362)
..++...+-..+.++.+++|.+.++.++++++|+++..+|++++.++.+.+-.
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 78899999999999999999999999999999999999999998888766533
No 94
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=89.60 E-value=0.25 Score=44.28 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=55.5
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhc
Q 018012 288 YNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 288 ~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~ 351 (362)
.||....++++.+|...+-....+..+..+++++++||++....++..++++.|+....+....
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~ 129 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE 129 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch
Confidence 4566667789999999999999999999999999999999999999999999998776665543
No 95
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=87.76 E-value=0.7 Score=41.99 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=49.0
Q ss_pred eeeecccchHHHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEE
Q 018012 140 NVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSM 191 (362)
Q Consensus 140 n~sL~~~svs~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l 191 (362)
+..++|.+....++...+.++++.+++.++++++++..+++|..+++.|+.+
T Consensus 170 ~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 170 GGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred eehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 7889999999999999999999999999999999999999999999999864
No 96
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.66 E-value=1.6 Score=40.23 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=53.9
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhh
Q 018012 289 NQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 289 ~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~ 350 (362)
.....++++.+.=-|.-++-+.||+-.+++++++.++..+|..+.-..++++|+.++-+.+.
T Consensus 99 MVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 99 MVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred HHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc
Confidence 34556677888877888899999999999999999999999999999999999998877643
No 97
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=85.50 E-value=3.4 Score=33.85 Aligned_cols=42 Identities=31% Similarity=0.292 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHH
Q 018012 303 THAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAA 344 (362)
Q Consensus 303 t~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~l 344 (362)
++-+.|.+.-+++.+.++++.+|..+...++|+++++.|+.+
T Consensus 70 avPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 70 AVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred eehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 344567788899999999999999999999999999999753
No 98
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.62 E-value=40 Score=32.58 Aligned_cols=131 Identities=17% Similarity=0.149 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-hH--HHHHHHHHHHHHHHHHHHHHh--cchhhhhcchhhhhhhhchHHHHHH
Q 018012 203 GFISAMISNISFTYRSIYSKKAMTDMD-ST--NIYAYISIIALFVCIPPAIIV--EGPQLIKHGLSDAISKVGMVKFISD 277 (362)
Q Consensus 203 G~ilalls~l~~a~~~vl~k~~~~~~~-~~--~~~~~~~~~s~i~l~p~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~ 277 (362)
....++.-+++..+-.+..|..+..++ +. .+..++++.+.+.+...-..- +.+.+ .|.. .. ..+...
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l---~~~~--~k---k~~P~~ 84 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPL---DLRT--AK---KWFPVS 84 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCc---ChHH--HH---HHccHH
Confidence 455666666777777788888776553 33 444488888777766544331 22211 1111 00 011112
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 278 LFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 278 l~~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
+++. ...+..-..+++.+--.+.+...+.++++.+...++||.+++...+.....++.|...+.
T Consensus 85 ~lf~-----~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 85 LLFV-----GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred HHHH-----HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 2322 233334456788899999999999999999999999999999999999888888876554
No 99
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=80.31 E-value=21 Score=34.64 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=75.4
Q ss_pred HHHHHHHhhcCC---ChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 018012 217 RSIYSKKAMTDM---DSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLAT 293 (362)
Q Consensus 217 ~~vl~k~~~~~~---~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~~~~ 293 (362)
.+++.|+.++++ -|+.+.......+.+.+.....+-..+.. +......+..++-.|++..+......
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~----------~~~~~~~~~~llpl~~~~~~~~v~~n 101 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS----------KISSKLPLRTLLPLGLVFCISHVLGN 101 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC----------ccccccchHHHHHHHHHHHHHHHhcc
Confidence 566777777632 35555555555555555444433222211 00011223445555666656656566
Q ss_pred HHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccH----------------------hHHHHHHHHHHHHHHHH
Q 018012 294 NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKIST----------------------QTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 294 ~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~----------------------~~iiG~~lil~Gv~ly~ 346 (362)
-.+++++--.+.+...+.|+++.++++++.+|+.+. .++.|...++.+.+...
T Consensus 102 ~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~a 176 (316)
T KOG1441|consen 102 VSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFA 176 (316)
T ss_pred hhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHH
Confidence 667889888899999999999999999999998654 56777777777665443
No 100
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=79.42 E-value=0.66 Score=43.07 Aligned_cols=132 Identities=13% Similarity=0.152 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHHH
Q 018012 203 GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVG 282 (362)
Q Consensus 203 G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 282 (362)
+++.+++=++.|+..-....|. +=+|.+-..-+++-++++-+...++ ..|.. ....+ ..-+.+|
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~--GG~p~qQ~lGtT~GALifaiiv~~~-~~p~~------------T~~~~-iv~~isG 66 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF--GGKPYQQTLGTTLGALIFAIIVFLF-VSPEL------------TLTIF-IVGFISG 66 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec--CCChhHhhhhccHHHHHHHHHHhee-ecCcc------------chhhH-HHHHHhh
Confidence 4677888888888776665554 2345555555565555554444433 22221 11222 2233444
Q ss_pred HHHHHHHHHHHHHhhccChHHH-HHHHHHHHHHHHHHHHHHhCCcccHhHH----HHHHHHHHHHHHHHhhhh
Q 018012 283 MFYHLYNQLATNTLERVAPLTH-AVGNVLKRVFVIGFSILAFGNKISTQTG----IGTVIAIAGVAAYSYIKA 350 (362)
Q Consensus 283 ~~~~l~~~~~~~~l~~~splt~-sv~~~lk~v~~i~~s~l~fge~~s~~~i----iG~~lil~Gv~ly~~~k~ 350 (362)
.+-.+-+...+++++..+...+ =+.+-++-+-+.+++++.|||.-++.++ +..++++.|+++-++.++
T Consensus 67 ~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 67 AFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 4444444455666655443322 2233467788999999999999887764 466778889888877665
No 101
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=62.06 E-value=22 Score=33.87 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 282 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 282 g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
++|-.......|-.+..|++..+.+..-.-.+++-+++.-+++.+++..||+|+..+..|....-
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 33333333334445577788888888878889999999999999999999999999999986543
No 102
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.18 E-value=6.1 Score=38.12 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHH
Q 018012 200 NWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLF 279 (362)
Q Consensus 200 ~~~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~ 279 (362)
+..|.++++.|+++.+...++.|+..++......- .-+++. + ... ...|+.-+
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~r----------------a~~gg~----~------yl~-~~~Ww~G~ 71 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLR----------------AGEGGY----G------YLK-EPLWWAGM 71 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHHHhhhccc----------------ccCCCc----c------hhh-hHHHHHHH
Confidence 56899999999999999999988876543220000 001110 0 000 11222212
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 280 WVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 280 ~~g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
+.-..+-..|+++| ....+.-.+-.+.+..+...+++..+++|++++...+|.+++++|..+..
T Consensus 72 ltm~vGei~NFaAY---aFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 72 LTMIVGEIANFAAY---AFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred HHHHHHhHhhHHHH---hhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 22223445555554 44555555667778888999999999999999999999999999975443
No 103
>PRK02237 hypothetical protein; Provisional
Probab=54.07 E-value=34 Score=27.70 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 304 HAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 304 ~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
++..+-+-.+.+++..+.+-|++++...++|.++++.|+.+.-+
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 45666678889999999999999999999999999999876543
No 104
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=51.71 E-value=22 Score=28.61 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=24.8
Q ss_pred HHHHHHHhCCcccHhHHHHHHHHHHHHHH
Q 018012 316 IGFSILAFGNKISTQTGIGTVIAIAGVAA 344 (362)
Q Consensus 316 i~~s~l~fge~~s~~~iiG~~lil~Gv~l 344 (362)
..+++++++|++++.++.|.++++.+++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 45678899999999999999999888653
No 105
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=51.69 E-value=1.8e+02 Score=27.06 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=49.9
Q ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhc
Q 018012 292 ATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 292 ~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~ 351 (362)
.-+.+.+.+--.+++.-++..++....-..+||.+++-.......+.+.+.+.-++...+
T Consensus 85 ~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q 144 (309)
T COG5070 85 SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ 144 (309)
T ss_pred cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhh
Confidence 344567777778889999999999999999999999999999999998888777766543
No 106
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=49.99 E-value=35 Score=27.58 Aligned_cols=44 Identities=23% Similarity=0.157 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHh
Q 018012 304 HAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 304 ~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~ 347 (362)
++..+-+-.+.+++.++.+-|++++-..++|.++++.|+.+.-+
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 45666678899999999999999999999999999999876543
No 107
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=42.31 E-value=4.6e+02 Score=28.72 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEE
Q 018012 150 FTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 192 (362)
Q Consensus 150 ~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~ 192 (362)
-+.++..+.|+-.+.++.+.+.+|.+...+.+.+-.++|.+.+
T Consensus 12 Ra~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 12 RAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 4566788999999999999887776444455555566665433
No 108
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=41.74 E-value=35 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=24.1
Q ss_pred cccHhHHHHHHHHHHHHHHHHhhhhchHHHH
Q 018012 326 KISTQTGIGTVIAIAGVAAYSYIKAQMEEEK 356 (362)
Q Consensus 326 ~~s~~~iiG~~lil~Gv~ly~~~k~~~~~~~ 356 (362)
..++.+++|+++++.|..+|...+.+.+-++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~R 34 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPEVSR 34 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcchhh
Confidence 4688999999999999999986655544333
No 109
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.29 E-value=82 Score=25.14 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=25.5
Q ss_pred HHHHHHHhCCcccHhHHHHHHHHHHHHHH
Q 018012 316 IGFSILAFGNKISTQTGIGTVIAIAGVAA 344 (362)
Q Consensus 316 i~~s~l~fge~~s~~~iiG~~lil~Gv~l 344 (362)
..+|+++++|++.+.++.|.++++.|++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999988765
No 110
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=38.77 E-value=8.6 Score=36.10 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHH
Q 018012 282 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 346 (362)
Q Consensus 282 g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~ 346 (362)
++.-.=.|+....+-++++-+......+--.+...+++|++++.+-.+.++.|.+++++|+.+..
T Consensus 85 a~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV 149 (336)
T KOG2766|consen 85 AFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVV 149 (336)
T ss_pred eEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEE
Confidence 34444455555556688888888888899999999999999999999999999999999986543
No 111
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=38.74 E-value=10 Score=35.97 Aligned_cols=102 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHH--HHhccccChhhhhhhccccceeEEEeecCc--cccHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018012 150 FTHTIKALEPFFNAAASQ--FILGQQLPLTLWLSLAPVVIGVSMASLTEL--SFNWTGFISAMISNISFTYRSIYSKKAM 225 (362)
Q Consensus 150 ~~~iiks~~Pvft~lls~--l~l~er~s~~~~~sl~l~v~Gv~l~~~~~~--s~~~~G~ilalls~l~~a~~~vl~k~~~ 225 (362)
..+++.+...+.+.++-. +|.++-.-+.-.++++++++-+.++..-.+ +.-+.|+++.+++++.--.-++|.. ++
T Consensus 51 a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym~-lL 129 (381)
T PF05297_consen 51 ALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYMW-LL 129 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 344444444443333322 333344667777887777766655543221 2234677665555443222222322 33
Q ss_pred cCC--ChHHHHHHHHHHH-HHHHHHHHHHh
Q 018012 226 TDM--DSTNIYAYISIIA-LFVCIPPAIIV 252 (362)
Q Consensus 226 ~~~--~~~~~~~~~~~~s-~i~l~p~~~~~ 252 (362)
.++ +-++++++.-.+. .+++++++++.
T Consensus 130 r~~GAs~WtiLaFcLAF~LaivlLIIAv~L 159 (381)
T PF05297_consen 130 RELGASFWTILAFCLAFLLAIVLLIIAVLL 159 (381)
T ss_dssp ------------------------------
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 4556655543332 33334444443
No 112
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=36.12 E-value=22 Score=28.69 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=25.5
Q ss_pred HHHHHHHHhccccChhhhhhhccccceeEEE
Q 018012 162 NAAASQFILGQQLPLTLWLSLAPVVIGVSMA 192 (362)
Q Consensus 162 t~lls~l~l~er~s~~~~~sl~l~v~Gv~l~ 192 (362)
-+.++.+++||++++....+.+.+++++.++
T Consensus 76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred eHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 3466788999999999999999888877654
No 113
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.43 E-value=11 Score=35.88 Aligned_cols=51 Identities=22% Similarity=0.154 Sum_probs=44.1
Q ss_pred HHhhccChHHHHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHH
Q 018012 294 NTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAA 344 (362)
Q Consensus 294 ~~l~~~splt~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~l 344 (362)
.++++++-.-+-++..+..++.+++++++++++-+..-..+..+++.|+.+
T Consensus 121 lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 121 LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 346888888888899999999999999999999999988888888888644
No 114
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=33.40 E-value=84 Score=21.18 Aligned_cols=10 Identities=40% Similarity=0.700 Sum_probs=5.3
Q ss_pred HHHHHHHhhh
Q 018012 340 AGVAAYSYIK 349 (362)
Q Consensus 340 ~Gv~ly~~~k 349 (362)
.|..+|...+
T Consensus 21 iGl~IyQkik 30 (49)
T PF11044_consen 21 IGLSIYQKIK 30 (49)
T ss_pred HHHHHHHHHH
Confidence 4555666443
No 115
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=33.39 E-value=3e+02 Score=28.46 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhhhhcchhhhhhhhchHHHHHHHHHH
Q 018012 202 TGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV 281 (362)
Q Consensus 202 ~G~ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (362)
-|..+...++++.=+|.-..|+-..+-++...--.......++-....+..++ . +.. ...+.+.+..+
T Consensus 361 aGL~l~iasavsHDiY~~vik~~ase~~~v~vaRi~~v~~~vva~~lgi~~~g-n---------Vaf--lVa~AF~lAaS 428 (529)
T COG4147 361 AGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIAVVILGVVAILLGILPPG-N---------VAF--LVALAFALAAS 428 (529)
T ss_pred hhHHHHHHHHHHhHHHHHHhCCCCCccceehhHHHHHHHHHHHHHHheecCCc-c---------HHH--HHHHHHHHHHH
Confidence 57777777777777777777765544344443333333322222222221121 0 010 01112223333
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHh------------CCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 282 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAF------------GNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 282 g~~~~l~~~~~~~~l~~~splt~sv~~~lk~v~~i~~s~l~f------------ge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
+.+-.+.--.+.+=..+.++..-.+.+....+..++.+-.+. +-+.+....+|+.+.+++..+.+...
T Consensus 429 a~fPvivlglfWKr~n~~GAi~G~~~GL~~tlv~i~l~~~i~~~~~~~~~~~~~~~~~~~~g~~sipv~F~~~~ivSllt 508 (529)
T COG4147 429 ANFPVIVLGLFWKRLNTAGAIAGMLLGLIVTLVLIILSPTIWVVILGHPGFGWAGFPYEGPGLFSIPVGFLGAWIVSLLT 508 (529)
T ss_pred cccchhhHHHHHhhccHHhHHHHHHHHHHHHHHHHHhCccccccccCccccccccCCCCCcchhhhhHHHHHhHheeccC
Confidence 332222222223334555666667777666666666665333 44577888999999999999888765
Q ss_pred hc
Q 018012 350 AQ 351 (362)
Q Consensus 350 ~~ 351 (362)
+.
T Consensus 509 ~~ 510 (529)
T COG4147 509 KP 510 (529)
T ss_pred CC
Confidence 44
No 116
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=32.37 E-value=5.9e+02 Score=26.41 Aligned_cols=28 Identities=18% Similarity=-0.109 Sum_probs=17.3
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHh
Q 018012 296 LERVAPLTHAVGNVLKRVFVIGFSILAF 323 (362)
Q Consensus 296 l~~~splt~sv~~~lk~v~~i~~s~l~f 323 (362)
..|+.++...+.....++-..+.|.+.-
T Consensus 341 ~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 341 RGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666677776653
No 117
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=31.73 E-value=5.1e+02 Score=25.48 Aligned_cols=206 Identities=15% Similarity=0.159 Sum_probs=104.5
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhc-------cccChhhhhhhccccceeEEEeec----C-------cccc
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILG-------QQLPLTLWLSLAPVVIGVSMASLT----E-------LSFN 200 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~-------er~s~~~~~sl~l~v~Gv~l~~~~----~-------~s~~ 200 (362)
-.++.|+.+|..+-+ -.++-++-.++--++.+ ++-....+++++++++|+++.... | .+||
T Consensus 91 Gl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~efn 170 (344)
T PF06379_consen 91 GLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAKEFN 170 (344)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchhhhh
Confidence 456777777766544 34444444444434433 333457889999999999886321 1 1233
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhh--------cCCChH----HHHHHHHHHHHHHHHHHHHHhc-chh-h-hhcchhh
Q 018012 201 -WTGFISAMISNISFTYRSIYSKKAM--------TDMDST----NIYAYISIIALFVCIPPAIIVE-GPQ-L-IKHGLSD 264 (362)
Q Consensus 201 -~~G~ilalls~l~~a~~~vl~k~~~--------~~~~~~----~~~~~~~~~s~i~l~p~~~~~e-~~~-~-~~~~~~~ 264 (362)
-.|.+.+++|.+..+..++=...-. ...+++ ..+.....-+++.-+...++.. ..+ . ...++..
T Consensus 171 ~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~ 250 (344)
T PF06379_consen 171 FKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSV 250 (344)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCcccccccc
Confidence 3799999999999998887554322 112332 1222233334444444444321 101 0 0001100
Q ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHH----HHHhhccChHHHHHHHHHHHHHHHHHHHHHh-----CCcccHhHHHHH
Q 018012 265 AISKVGMVKFISDLFWVGMFYHLYNQLA----TNTLERVAPLTHAVGNVLKRVFVIGFSILAF-----GNKISTQTGIGT 335 (362)
Q Consensus 265 ~~~~~~~~~~~~~l~~~g~~~~l~~~~~----~~~l~~~splt~sv~~~lk~v~~i~~s~l~f-----ge~~s~~~iiG~ 335 (362)
. ...-...+. ...+.|+.-|.+.+.. .+.-..-......+.+.+..+++-+.+++.- +++.--.-++|+
T Consensus 251 ~-~~~~~~N~~-~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~lkEWKg~s~kt~~vl~~G~ 328 (344)
T PF06379_consen 251 A-KPPLLKNYL-FCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLILKEWKGASKKTIRVLVLGI 328 (344)
T ss_pred c-cchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHH
Confidence 0 000011221 2222344333332222 2111233355567777778888888887753 122224457888
Q ss_pred HHHHHHHHHHHh
Q 018012 336 VIAIAGVAAYSY 347 (362)
Q Consensus 336 ~lil~Gv~ly~~ 347 (362)
++++.++.+.-+
T Consensus 329 ~vlI~s~~ivG~ 340 (344)
T PF06379_consen 329 AVLILSVVIVGY 340 (344)
T ss_pred HHHHHHHHHHhc
Confidence 888888766543
No 118
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=29.00 E-value=5.4e+02 Score=24.88 Aligned_cols=37 Identities=16% Similarity=0.029 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhhhc
Q 018012 315 VIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 315 ~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k~~ 351 (362)
..+.+.+.-.--......++.++.+.++.+..+.+++
T Consensus 356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444422223445677777777777665443333
No 119
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=24.37 E-value=7.5e+02 Score=25.25 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC-cccHhHHHHHHHHHHHHHHHHhhhhc
Q 018012 301 PLTHAVGNVLKRVFVIGFSILAFGN-KISTQTGIGTVIAIAGVAAYSYIKAQ 351 (362)
Q Consensus 301 plt~sv~~~lk~v~~i~~s~l~fge-~~s~~~iiG~~lil~Gv~ly~~~k~~ 351 (362)
.+.|++++.+-++++.+ +++.++- -......-|++-+++|++.+...|.+
T Consensus 159 n~shNiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 159 NTSHNIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred hhhhhcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46789999888888877 6666553 33444566777778888888766643
No 120
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=23.73 E-value=4e+02 Score=23.75 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018012 202 TGFISAMISNISFTYRSIYSKKA 224 (362)
Q Consensus 202 ~G~ilalls~l~~a~~~vl~k~~ 224 (362)
-+....++++++++.+..+-||.
T Consensus 179 ~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666788888888887666664
No 121
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=23.69 E-value=4.5e+02 Score=25.51 Aligned_cols=102 Identities=19% Similarity=0.247 Sum_probs=66.4
Q ss_pred HhhHHHHHHHHHHHhccccChhhh-hhhccccceeEEEeecC------------------------ccc------cHHHH
Q 018012 156 ALEPFFNAAASQFILGQQLPLTLW-LSLAPVVIGVSMASLTE------------------------LSF------NWTGF 204 (362)
Q Consensus 156 s~~Pvft~lls~l~l~er~s~~~~-~sl~l~v~Gv~l~~~~~------------------------~s~------~~~G~ 204 (362)
..-|+++++.--.---..+++..+ ..+++.++|+++-..++ .++ ...|+
T Consensus 148 ~~GPf~tMl~LG~sG~a~ip~~~lv~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GI 227 (314)
T PF03812_consen 148 NDGPFFTMLALGASGLANIPWMSLVAALLPIIIGMILGNLDPDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGI 227 (314)
T ss_pred hhhHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchH
Confidence 457888887544444457888766 45678888988754331 111 13588
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhcchhh
Q 018012 205 ISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQL 257 (362)
Q Consensus 205 ilalls~l~~a~~~vl~k~~~~~~~~~~~~~~~~~~s~i~l~p~~~~~e~~~~ 257 (362)
++.++..+..+.-.++..|...+-+...-....+..+.-...|.++..-.|++
T Consensus 228 lLgv~~~~vtg~~~~~~dr~i~~~~g~aG~A~sstAGnavatPaaiA~~dP~~ 280 (314)
T PF03812_consen 228 LLGVIVVVVTGIPLYLADRLILKGNGVAGAAISSTAGNAVATPAAIAAADPSF 280 (314)
T ss_pred HHHHHHHHHHhHHHHHHHHHHcCCCCceeehHHhhhhhhhhhhHHHHHhChhh
Confidence 88888888888877777777654455555555666666677777766555544
No 122
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=23.50 E-value=2.2e+02 Score=26.57 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=9.9
Q ss_pred cHhHHHHHHHHHHHHHH
Q 018012 328 STQTGIGTVIAIAGVAA 344 (362)
Q Consensus 328 s~~~iiG~~lil~Gv~l 344 (362)
+.+.|++-+++++|.++
T Consensus 220 n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 220 NGQYWLWWIFLVLGLLL 236 (262)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 33556666666666554
No 123
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=21.48 E-value=43 Score=27.11 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=37.2
Q ss_pred ecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEE
Q 018012 143 FAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMA 192 (362)
Q Consensus 143 L~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~ 192 (362)
|+..+.+.+.-+ .+++-.|+++.+..+--|......+++..++++|+.+.
T Consensus 73 La~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 73 LASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 555555554443 57788999999987666667788899999999998654
No 124
>PRK14772 lipoprotein signal peptidase; Provisional
Probab=21.25 E-value=5e+02 Score=23.22 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=9.1
Q ss_pred HHHHHHHHhhHHhhh
Q 018012 120 LNVIFNILNKRIYNY 134 (362)
Q Consensus 120 ~s~~~~i~NK~il~~ 134 (362)
+.+..-.+-|+....
T Consensus 34 ~~~~lDQ~tK~~v~~ 48 (190)
T PRK14772 34 FAYVFDQLTKLWVTS 48 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566777777653
No 125
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=21.10 E-value=1.1e+02 Score=24.60 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeec
Q 018012 157 LEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 195 (362)
Q Consensus 157 ~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~ 195 (362)
...+..++..+++-|+++++..+.+-+++++|+.++.+.
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 345556667778889999999999999999999887654
No 126
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=20.31 E-value=8.5e+02 Score=24.16 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=42.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeec-CccccHHHHHHHHHH-HHHHHHHHHHHHHh-hc
Q 018012 150 FTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT-ELSFNWTGFISAMIS-NISFTYRSIYSKKA-MT 226 (362)
Q Consensus 150 ~~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~-~~s~~~~G~ilalls-~l~~a~~~vl~k~~-~~ 226 (362)
..+.+....-.++.++-..+..+|++......- +++|.+-++.. +.-..+...+..+++ .+++-.+..+.+|. .+
T Consensus 225 ~nT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG--~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~~iD 302 (399)
T PF00909_consen 225 VNTLLAAAAGGLTWLLISYLLSGKWSMVGICNG--ALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRLKID 302 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS--HHHHHHH--HHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred hhhhhhHHHHHHHHHHhhhccccccchhhhhhh--hhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccceeEec
Confidence 445554444444444444455566776554432 23333222222 221234444555544 34444443334433 22
Q ss_pred -CCChHHHHHHHHHHHHHHHHH
Q 018012 227 -DMDSTNIYAYISIIALFVCIP 247 (362)
Q Consensus 227 -~~~~~~~~~~~~~~s~i~l~p 247 (362)
..+...+.....+.+.+...+
T Consensus 303 D~~~~~~vHg~~Gi~G~i~~gl 324 (399)
T PF00909_consen 303 DPVGAFAVHGVGGIWGTILTGL 324 (399)
T ss_dssp HTTGHHHHCHHHHHHHHHHHHH
T ss_pred cccceEeeeeccHHHHHHHHHH
Confidence 346666666666666655443
Done!