Query 018012
Match_columns 362
No_of_seqs 256 out of 2106
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 08:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.2 4.3E-06 1.5E-10 69.8 7.8 65 285-349 40-105 (137)
2 3b5d_A Multidrug transporter E 97.7 0.00021 7.2E-09 57.1 10.1 61 289-349 44-105 (110)
3 3b5d_A Multidrug transporter E 97.4 8E-05 2.7E-09 59.6 3.4 57 140-196 48-105 (110)
4 2i68_A Protein EMRE; transmemb 97.2 6E-05 2.1E-09 62.8 0.5 55 140-194 48-103 (137)
5 3l1l_A Arginine/agmatine antip 33.2 93 0.0032 29.2 7.3 23 330-352 409-431 (445)
6 1pw4_A Glycerol-3-phosphate tr 21.9 4.5E+02 0.015 23.8 15.7 21 327-347 412-432 (451)
7 3kcu_A Probable formate transp 10.0 9.1E+02 0.031 21.6 10.3 24 326-349 257-280 (285)
8 4dx5_A Acriflavine resistance 8.5 1.2E+03 0.041 24.7 9.6 28 313-340 376-403 (1057)
9 2v50_A Multidrug resistance pr 8.0 1.3E+03 0.045 24.4 9.6 28 313-340 376-403 (1052)
10 2l2t_A Receptor tyrosine-prote 7.5 1.4E+02 0.0048 19.2 0.9 24 332-355 20-43 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.17 E-value=4.3e-06 Score=69.77 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhhccChHHHHHH-HHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 285 YHLYNQLATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 285 ~~l~~~~~~~~l~~~splt~sv~-~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
+.+..+++..++++.++...... ..+.|++++++++++|||++++.+++|+++++.|+++.+..+
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33444456667788888766555 789999999999999999999999999999999999988654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.73 E-value=0.00021 Score=57.13 Aligned_cols=61 Identities=21% Similarity=0.204 Sum_probs=49.6
Q ss_pred HHHHHHHhhccChHHH-HHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHHHhhh
Q 018012 289 NQLATNTLERVAPLTH-AVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 289 ~~~~~~~l~~~splt~-sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
.++...++++.+.-+. .+...+.++++.+.++++|||++++.+++|+++++.|++..+..+
T Consensus 44 ~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344455677666555 444789999999999999999999999999999999999987644
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.42 E-value=8e-05 Score=59.63 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=52.1
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEeecC
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 196 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~~~ 196 (362)
+.++++.+++.+..+ .++.|+++++++++++||++++.++++++++++|+.+....+
T Consensus 48 ~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 557999999999998 899999999999999999999999999999999998775543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.21 E-value=6e-05 Score=62.79 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=40.0
Q ss_pred eeeecccchHHHHHH-HHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEee
Q 018012 140 NVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASL 194 (362)
Q Consensus 140 n~sL~~~svs~~~ii-ks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~~ 194 (362)
+.++++++++.+..+ .++.|++++++++++++|++++.+++|++++++|++++..
T Consensus 48 ~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 567999999988888 9999999999999999999999999999999999987744
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=33.19 E-value=93 Score=29.21 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhch
Q 018012 330 QTGIGTVIAIAGVAAYSYIKAQM 352 (362)
Q Consensus 330 ~~iiG~~lil~Gv~ly~~~k~~~ 352 (362)
..+.|..+.+.|+.+|-+.+++.
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 45668888899998888766543
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=21.87 E-value=4.5e+02 Score=23.79 Aligned_cols=21 Identities=10% Similarity=-0.235 Sum_probs=10.4
Q ss_pred ccHhHHHHHHHHHHHHHHHHh
Q 018012 327 ISTQTGIGTVIAIAGVAAYSY 347 (362)
Q Consensus 327 ~s~~~iiG~~lil~Gv~ly~~ 347 (362)
.....++..++.+++.+++-.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544443
No 7
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=9.97 E-value=9.1e+02 Score=21.57 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=17.0
Q ss_pred cccHhHHHHHHHHHHHHHHHHhhh
Q 018012 326 KISTQTGIGTVIAIAGVAAYSYIK 349 (362)
Q Consensus 326 ~~s~~~iiG~~lil~Gv~ly~~~k 349 (362)
|.+..|++|..+.+...++|.+.|
T Consensus 257 pvtlGNiIGG~~fvgl~y~~~~~~ 280 (285)
T 3kcu_A 257 PVTIGNIIGGGLLVGLTYWVIYLR 280 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456778888888777766666544
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=8.51 E-value=1.2e+03 Score=24.71 Aligned_cols=28 Identities=36% Similarity=0.369 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCcccHhHHHHHHHHHH
Q 018012 313 VFVIGFSILAFGNKISTQTGIGTVIAIA 340 (362)
Q Consensus 313 v~~i~~s~l~fge~~s~~~iiG~~lil~ 340 (362)
++..+....++|.+++...++|.++.+.
T Consensus 376 ~~~~~~~l~~~g~~ln~~sl~gl~~~iG 403 (1057)
T 4dx5_A 376 LLGTFAVLAAFGFSINTLTMFGMVLAIG 403 (1057)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHee
Confidence 4455556677899999999998876653
No 9
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=7.99 E-value=1.3e+03 Score=24.44 Aligned_cols=28 Identities=36% Similarity=0.335 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCcccHhHHHHHHHHHH
Q 018012 313 VFVIGFSILAFGNKISTQTGIGTVIAIA 340 (362)
Q Consensus 313 v~~i~~s~l~fge~~s~~~iiG~~lil~ 340 (362)
++..+....++|.+++...++|.++.+.
T Consensus 376 ~~~~~~~l~~~g~~ln~~s~~gl~~~iG 403 (1052)
T 2v50_A 376 LLGTFGVLAAFGFSINTLTMFGMVLAIG 403 (1052)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3444556677899999999988776553
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.47 E-value=1.4e+02 Score=19.19 Aligned_cols=24 Identities=21% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHH
Q 018012 332 GIGTVIAIAGVAAYSYIKAQMEEE 355 (362)
Q Consensus 332 iiG~~lil~Gv~ly~~~k~~~~~~ 355 (362)
+.+.+++.+++++|-..+++++++
T Consensus 20 v~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcc
Done!