Query 018012
Match_columns 362
No_of_seqs 256 out of 2106
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 08:30:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018012.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018012hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 21.4 2.1E+02 0.015 23.6 14.2 15 342-356 425-439 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 10.7 1.2E+02 0.0086 15.6 2.9 17 202-218 3-19 (27)
3 d1pv7a_ f.38.1.2 (A:) Lactose 9.5 2.5E+02 0.018 22.2 6.3 11 172-182 284-294 (417)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 7.1 6.3E+02 0.046 21.3 14.3 95 151-247 231-329 (383)
5 d1iwga8 f.35.1.1 (A:513-566,A: 5.2 6.2E+02 0.045 19.2 9.8 29 314-342 96-124 (222)
6 d2axtz1 f.17.5.1 (Z:1-62) Phot 3.6 2.5E+02 0.018 17.8 1.9 31 98-130 30-60 (62)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 3.6 7.8E+02 0.057 18.2 9.4 42 304-345 68-109 (199)
8 d1n1ea1 a.100.1.6 (A:198-357) 3.0 4.9E+02 0.036 18.8 3.7 23 300-322 2-24 (160)
9 d1cola_ f.1.1.1 (A:) Colicin A 2.4 1E+03 0.076 18.0 5.0 53 303-356 135-193 (197)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 2.3 4.8E+02 0.035 14.1 1.9 11 335-345 14-24 (34)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.39 E-value=2.1e+02 Score=23.57 Aligned_cols=15 Identities=0% Similarity=0.036 Sum_probs=5.6
Q ss_pred HHHHHhhhhchHHHH
Q 018012 342 VAAYSYIKAQMEEEK 356 (362)
Q Consensus 342 v~ly~~~k~~~~~~~ 356 (362)
++++-....++++++
T Consensus 425 ~~~~~~~~~~~~r~~ 439 (447)
T d1pw4a_ 425 ILLIVVMIGEKRRHE 439 (447)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHH
Confidence 334433333333333
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.68 E-value=1.2e+02 Score=15.58 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018012 202 TGFISAMISNISFTYRS 218 (362)
Q Consensus 202 ~G~ilalls~l~~a~~~ 218 (362)
.|.+.+-++.++|+.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 58888888888888764
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.49 E-value=2.5e+02 Score=22.24 Aligned_cols=11 Identities=18% Similarity=-0.046 Sum_probs=5.0
Q ss_pred cccChhhhhhh
Q 018012 172 QQLPLTLWLSL 182 (362)
Q Consensus 172 er~s~~~~~sl 182 (362)
+|...++.+.+
T Consensus 284 ~r~~~~~~~~~ 294 (417)
T d1pv7a_ 284 NRIGGKNALLL 294 (417)
T ss_dssp HHHCHHHHHHH
T ss_pred cccccccchhh
Confidence 45554444433
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=7.09 E-value=6.3e+02 Score=21.32 Aligned_cols=95 Identities=8% Similarity=0.002 Sum_probs=42.9
Q ss_pred HHHHHHhhHHHHHHHHHHHhccccChhhhhhhccccceeEEEe-ecCccccHHHHHHHHHHH-HHHHHHHHHHHHh-hcC
Q 018012 151 THTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMAS-LTELSFNWTGFISAMISN-ISFTYRSIYSKKA-MTD 227 (362)
Q Consensus 151 ~~iiks~~Pvft~lls~l~l~er~s~~~~~sl~l~v~Gv~l~~-~~~~s~~~~G~ilalls~-l~~a~~~vl~k~~-~~~ 227 (362)
.+++.+..-.++.++...+.++|++......= ++.|++-++ ..+.-..+...+..+++. +++-.+..+.+|. .+|
T Consensus 231 nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD 308 (383)
T d1u7ga_ 231 NTVVATAAAILGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDD 308 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhccccc
Confidence 33444444445545555566777776654421 123333222 222222333344444433 3333344443332 222
Q ss_pred -CChHHHHHHHHHHHHHHHHH
Q 018012 228 -MDSTNIYAYISIIALFVCIP 247 (362)
Q Consensus 228 -~~~~~~~~~~~~~s~i~l~p 247 (362)
++...+-....+.+.+..-.
T Consensus 309 ~~~~~~vHg~~Gi~G~l~~gl 329 (383)
T d1u7ga_ 309 PCDVFGVHGVCGIVGCIMTGI 329 (383)
T ss_dssp GGGHHHHHHHHHHHHHHHHHH
T ss_pred ccceEeehhhhHHHHHHHHHH
Confidence 35566666666666555433
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.16 E-value=6.2e+02 Score=19.20 Aligned_cols=29 Identities=10% Similarity=-0.069 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCcccHhHHHHHHHHHHHH
Q 018012 314 FVIGFSILAFGNKISTQTGIGTVIAIAGV 342 (362)
Q Consensus 314 ~~i~~s~l~fge~~s~~~iiG~~lil~Gv 342 (362)
...+.+..+.+.+++....+|.++.+...
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~ 124 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGLS 124 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhhh
Confidence 44556777889999999999888866543
No 6
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.64 E-value=2.5e+02 Score=17.75 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=19.9
Q ss_pred CccccccCCchHHHHHHHHHHHHHHHHHHHhhH
Q 018012 98 PVRFFDRYPALVTGFFFFMWYFLNVIFNILNKR 130 (362)
Q Consensus 98 ~~~~~~~~~~l~~~~~~~~w~~~s~~~~i~NK~ 130 (362)
|+++.++++.+ -.-..+|..+-+...++|-.
T Consensus 30 P~gW~~sK~lv--fsG~~~W~~LV~lvgilNsf 60 (62)
T d2axtz1 30 PQDWDRSKQLI--FLGSGLWIALVLVVGVLNFF 60 (62)
T ss_dssp CTTTTHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCceE--EEchhHHHHHHHHHHhhhee
Confidence 44555554332 23478899888888888854
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.63 E-value=7.8e+02 Score=18.16 Aligned_cols=42 Identities=26% Similarity=0.129 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcccHhHHHHHHHHHHHHHHH
Q 018012 304 HAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAY 345 (362)
Q Consensus 304 ~sv~~~lk~v~~i~~s~l~fge~~s~~~iiG~~lil~Gv~ly 345 (362)
.......-.+........++|.+++.....+..+.+....-|
T Consensus 68 i~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 68 IPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred eeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 333444445566666778889999999998888887765544
No 8
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=3.00 E-value=4.9e+02 Score=18.83 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 018012 300 APLTHAVGNVLKRVFVIGFSILA 322 (362)
Q Consensus 300 splt~sv~~~lk~v~~i~~s~l~ 322 (362)
+...+-+++.+|.+.++..|+.-
T Consensus 2 D~~GvE~~galKNi~Aia~Gi~~ 24 (160)
T d1n1ea1 2 DTVGCEVASAVKNVLAIGSGVAN 24 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888777777654
No 9
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=2.42 E-value=1e+03 Score=18.01 Aligned_cols=53 Identities=17% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh------CCcccHhHHHHHHHHHHHHHHHHhhhhchHHHH
Q 018012 303 THAVGNVLKRVFVIGFSILAF------GNKISTQTGIGTVIAIAGVAAYSYIKAQMEEEK 356 (362)
Q Consensus 303 t~sv~~~lk~v~~i~~s~l~f------ge~~s~~~iiG~~lil~Gv~ly~~~k~~~~~~~ 356 (362)
+..+.+....+...++++.+. |-|.++..++|+ +++..+-.|--.+.-++-.+
T Consensus 135 s~~~~~~At~va~~~fs~~~~~~~~~~g~~~~~iGI~g~-li~~~v~alIdd~~~~~iN~ 193 (197)
T d1cola_ 135 SWVLSGIASSVALGIFSATLGAYALSLGVPAIAVGIAGI-LLAAVVGALIDDKFADALNN 193 (197)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHH-HHHHHHHHHHCTHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHccccccHHHHHHH-HHHHHHHHHhhHHHHHHHHH
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.33 E-value=4.8e+02 Score=14.09 Aligned_cols=11 Identities=45% Similarity=0.670 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 018012 335 TVIAIAGVAAY 345 (362)
Q Consensus 335 ~~lil~Gv~ly 345 (362)
.++.+.|++.|
T Consensus 14 ~vi~~vG~FfY 24 (34)
T d2axtj1 14 GVIVIVGLFFY 24 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHhheeeeee
Done!