BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018014
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 141 bits (355), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 129/270 (47%), Gaps = 21/270 (7%)
Query: 60 LPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVKV 119
P+I L + V+ ER E I A + WGFF++ NHGI +++ + + +
Sbjct: 4 FPIISLDK-------VNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGH 56
Query: 120 FKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLNQLSWSEAF---HIPMADIXXXXXXXXX 176
+K K E +F A G + W F H+P+++I
Sbjct: 57 YK-----KCXEQRFKELVASKALEGVQAE--VTDXDWESTFFLKHLPISNISEVPDLDEE 109
Query: 177 XXXXXEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPSTC---YLRMNRYPPCPVPS 233
FA + LA +L +L E LG E + + S +++ YPPCP P
Sbjct: 110 YREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPD 169
Query: 234 AIHGLMPHTDSDFLTILHQDE-VGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAWSNDVY 292
I GL HTD+ + +L QD+ V GLQL+KDG+WI V P +++VN+GD + +N Y
Sbjct: 170 LIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKY 229
Query: 293 KSVEHRVVTNPSTERFSIAYFFCPSYDTVI 322
KSV HRV+ R S+A F+ P D VI
Sbjct: 230 KSVXHRVIAQKDGARXSLASFYNPGSDAVI 259
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 130/280 (46%), Gaps = 18/280 (6%)
Query: 59 ELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVK 118
++P IDL I +D + RE C EE+ +AS WG + NHGI DL+E++++ +
Sbjct: 46 QVPTIDLKNIESDDEKI----RENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEE 101
Query: 119 VFKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLN---QLSWSEAF-HIPMA----DIXXX 170
F ++K +K+ N A G + N QL W + F H+ D+
Sbjct: 102 FFSLSVEEK---EKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIW 158
Query: 171 XXXXXXXXXXXEQFATTVAGLARKLTAILAEKLGRESTFFQE---NCLPSTCYLRMNRYP 227
++A + LA K+ L+ LG E ++ +++N YP
Sbjct: 159 PKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYP 218
Query: 228 PCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAW 287
CP P G+ HTD LT + + V GLQL +GKW+ K P++++++IGD +
Sbjct: 219 KCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEIL 278
Query: 288 SNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEP 327
SN YKS+ HR + N R S A F P D ++ P
Sbjct: 279 SNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 318
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 130/280 (46%), Gaps = 18/280 (6%)
Query: 59 ELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVK 118
++P IDL I +D + RE C EE+ +AS WG + NHGI DL+E++++ +
Sbjct: 45 QVPTIDLKNIESDDEKI----RENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEE 100
Query: 119 VFKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLN---QLSWSEAF-HIPMA----DIXXX 170
F ++K +K+ N A G + N QL W + F H+ D+
Sbjct: 101 FFSLSVEEK---EKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIW 157
Query: 171 XXXXXXXXXXXEQFATTVAGLARKLTAILAEKLGRESTFFQE---NCLPSTCYLRMNRYP 227
++A + LA K+ L+ LG E ++ +++N YP
Sbjct: 158 PKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYP 217
Query: 228 PCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAW 287
CP P G+ HTD LT + + V GLQL +GKW+ K P++++++IGD +
Sbjct: 218 KCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEIL 277
Query: 288 SNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEP 327
SN YKS+ HR + N R S A F P D ++ P
Sbjct: 278 SNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLP 317
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 127/275 (46%), Gaps = 18/275 (6%)
Query: 59 ELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMREEQVK 118
++P IDL I +D + RE C EE+ +AS WG + NHGI DL E++++ +
Sbjct: 46 QVPTIDLKNIESDDEKI----RENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEE 101
Query: 119 VFKQPFDKKSKEDKFMNFPAGSYRWGTPTATCLN---QLSWSEAF-HIPMA----DIXXX 170
F ++K +K+ N A G + N QL W + F H+ D+
Sbjct: 102 FFSLSVEEK---EKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIW 158
Query: 171 XXXXXXXXXXXEQFATTVAGLARKLTAILAEKLGRESTFFQENCLPSTCYL---RMNRYP 227
++A + LA K+ L+ LG E ++ L ++N YP
Sbjct: 159 PKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYP 218
Query: 228 PCPVPSAIHGLMPHTDSDFLTILHQDEVGGLQLVKDGKWIAVKPNPEALIVNIGDLFQAW 287
CP P G+ HTD LT + + V GLQL +GKW+ K P++++ +IGD +
Sbjct: 219 KCPQPELALGVEAHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEIL 278
Query: 288 SNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVI 322
SN YKS+ HR + N R S A F P D ++
Sbjct: 279 SNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 13/244 (5%)
Query: 85 EEIARASQQWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSKEDKFMNFPAGSYRWG 144
+E+ + +++GF ++++ + + ++ + F P + K + G +G
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFG 83
Query: 145 TPTATCLNQLSWSEAFH----IPMADIXXXXXXXXXXXXXXEQFATTVA-------GLAR 193
TA + E +H +P F V+ G
Sbjct: 84 VETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGG 143
Query: 194 KLTAILAEKLGRESTFFQENCLPSTCYLRMNRYPPCPVPSAIHGLMPHTDSDFLTILHQD 253
K+ +A L E FF+ LR+ YPP P + H D + +T+L
Sbjct: 144 KVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGA 203
Query: 254 EVGGLQLV-KDGKWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAY 312
E GGL+++ +DG+W+ + P P L++NIGD + +N+V S HRVV NP ER +
Sbjct: 204 EEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV-NPPPERRGVPR 262
Query: 313 FFCP 316
+ P
Sbjct: 263 YSTP 266
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 128/313 (40%), Gaps = 37/313 (11%)
Query: 55 VEECELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMRE 114
V + +P ID+S + +D ++ + ++I AS+ GFF NHGI+ L + +
Sbjct: 4 VSKANVPKIDVSPLFGDD----QAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTK 59
Query: 115 E-------------QVKVFKQPFDKKSKEDKFMNFPAG----SYRWGTPTATCLN-QLSW 156
E ++ + + + + +++ P S+ + P T + ++
Sbjct: 60 EFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 157 SEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGLARKLTAILAEKLGRESTFFQ----- 211
H ++ EQ+ V GL+ L A LG+E FF
Sbjct: 120 KTPTH--EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP 177
Query: 212 ENCLPSTCYLR---MNRYPPCPVPSAIHGLMP----HTDSDFLTILHQDEVGGLQLVKDG 264
++ L S +R ++ YP + +A G H D +T+L+Q V LQ+
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA 237
Query: 265 KWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQN 324
+ ++ + ++N G +N+ YK+ HRV + ER S+ +F YD+VI
Sbjct: 238 GYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKW-VNAERQSLPFFVNLGYDSVIDP 296
Query: 325 SEPSNYRKFSFRE 337
+P S RE
Sbjct: 297 FDPREPNGKSDRE 309
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 128/313 (40%), Gaps = 37/313 (11%)
Query: 55 VEECELPLIDLSRILHNDNVVDESEREECKEEIARASQQWGFFQVTNHGISKDLLEKMRE 114
V + +P ID+S + +D ++ + ++I AS+ GFF NHGI+ L + +
Sbjct: 4 VSKANVPKIDVSPLFGDD----QAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTK 59
Query: 115 E-------------QVKVFKQPFDKKSKEDKFMNFPAG----SYRWGTPTATCLN-QLSW 156
E ++ + + + + +++ P S+ + P T + ++
Sbjct: 60 EFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQA 119
Query: 157 SEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGLARKLTAILAEKLGRESTFFQ----- 211
H ++ EQ+ V GL+ L A LG+E FF
Sbjct: 120 KTPTH--EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP 177
Query: 212 ENCLPSTCYLR---MNRYPPCPVPSAIHGLMP----HTDSDFLTILHQDEVGGLQLVKDG 264
++ L S +R ++ YP + +A G H D +T+L+Q V LQ+
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA 237
Query: 265 KWIAVKPNPEALIVNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQN 324
+ ++ + ++N G +N+ YK+ HRV + ER S+ +F YD+VI
Sbjct: 238 GYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKW-VNAERQSLPFFVNLGYDSVIDP 296
Query: 325 SEPSNYRKFSFRE 337
+P S RE
Sbjct: 297 FDPREPNGKSDRE 309
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 221 LRMNRYPPCPVPSAIHGL--MPHTDSDFLTILHQDEVGGLQL-VKDGKWIAVKPNPEALI 277
LR+ YPP + H D + +T+L GLQ+ KDG W+ V + +I
Sbjct: 152 LRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNII 211
Query: 278 VNIGDLFQAWSNDVYKSVEHRVV----TNPSTERFSIAYFFCPSYDTVIQ 323
+NIGD Q S+ + S HRV+ T+ + R S+ F P V+
Sbjct: 212 INIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 205 RESTFFQENCLPSTCYLRMNRYPP---CPV---PSAIHGLMPHTDSDFLTILHQ-DEVGG 257
R T C + YL+MN P CPV +A L+ D F+ IL+ +V
Sbjct: 230 RAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI--LDGLFMEILNDCSDVDE 287
Query: 258 LQLVKDGKWIAVKPNPEALIVN 279
++ +DG W ++P EA+ V+
Sbjct: 288 IKFQEDGSWCPMRPKKEAMKVS 309
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 15/137 (10%)
Query: 97 FQVTNHGISKDLLEKMREEQVKV-----FKQPFDKKSKE---DKFMNFPAGSYRWGTPTA 148
FQV G S L+ E ++ ++ ++ E KFM P T
Sbjct: 200 FQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPDTR----AITL 255
Query: 149 TCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGLARKLTAILAEKLGREST 208
CL ++S IP + +Q AT+V + L A A G + +
Sbjct: 256 KCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQS 312
Query: 209 FFQENCLPSTCYLRMNR 225
F Q+ + T YL NR
Sbjct: 313 FLQDLAMFLTTYLARNR 329
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 243 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329
>pdb|3UZQ|B Chain B, Crystal Structure Of The Dengue Virus Serotype 1
Envelope Protein Domain Iii In Complex With The
Variable Domains Of Mab 4e11
Length = 114
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 21/28 (75%)
Query: 9 QMLESDNFITELNQPLNMATDPPFHQAY 36
+++ ++ +T+ +P+N+ T+PPF ++Y
Sbjct: 56 RLITANPIVTDKEKPVNIETEPPFGESY 83
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 241 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 293
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 294 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 327
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 243 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 243 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 243 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 243 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 243 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 243 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 243 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 243 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 132 KFMNFPAGSYRWGTPTATCLNQLSWSEAFHIPMADIXXXXXXXXXXXXXXEQFATTVAGL 191
KFM P T CL ++S IP + +Q AT+V +
Sbjct: 243 KFMTSPDTR----AITLKCLTEVS---NLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPV 295
Query: 192 ARKLTAILAEKLGRESTFFQENCLPSTCYLRMNR 225
L A A G + +F Q+ + T YL NR
Sbjct: 296 TADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 278 VNIGDLFQAWSNDVYKSVEHRVVTNPSTERFSIAYFFCPSYDTVIQNSEPSNYRKFSF-- 335
VN+GD+FQ W + + + + P E + FC Y +NY++F+F
Sbjct: 304 VNVGDMFQLWESADEATKKELLKVEPFDE-LEEFHLFCHHYVLC----HATNYKEFAFTQ 358
Query: 336 --------REFRLQVQEDVQ 347
E L V ED Q
Sbjct: 359 GFLFDRSISEINLTVDEDYQ 378
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 21/97 (21%)
Query: 33 HQAYKSLIEDTSNNIFGKKLVLVEECELPLIDLSRILHNDNVVDESEREECKEEIARASQ 92
H AYK +I++T+ ++ VL E + P E E+ + IA+
Sbjct: 258 HLAYKDVIDETTGQTR-RRFVLRESAQCP----------------KEDEDSFQNIAKHC- 299
Query: 93 QWGFFQVTNHGISKDLLEKMREEQVKVFKQPFDKKSK 129
FF N I+ L+KM +EQ+ V + P + K
Sbjct: 300 ---FFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPK 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,595,211
Number of Sequences: 62578
Number of extensions: 418605
Number of successful extensions: 1298
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 31
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)