BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018015
(362 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL
PE=2 SV=2
Length = 358
Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust.
Identities = 231/382 (60%), Positives = 270/382 (70%), Gaps = 44/382 (11%)
Query: 1 MFQHHKKPSSMN-SHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDK 59
MF H KKPSSMN S+ +R +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDK
Sbjct: 1 MF-HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDK 59
Query: 60 ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG-----LDLQRNTASS 114
ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKE+ DHS K+G +D+QRN ASS
Sbjct: 60 ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASS 119
Query: 115 SGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETV--- 171
SG++ R+MNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILE+ACQTLA GE +
Sbjct: 120 SGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLA-GENMAAA 178
Query: 172 -----TPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGG--DQI-DHLQQNMDR 223
+KG +G+ ++ + PL+F FQDLN+YG DQ+ DH N
Sbjct: 179 TAAAAVGGGYKGNLGSSSLS--AAVGPPPHPLSFPPFQDLNIYGNTTDQVLDH--HNFHH 234
Query: 224 QSSLDH--GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDD 281
Q+ +H G ++ NI LGKKRP+P N G+ K LMWSD + DL+ I DD
Sbjct: 235 QNIENHFTGNNAADTNIYLGKKRPNP-NFGNDVRKGLLMWSD--QDHDLSANQSI---DD 288
Query: 282 PFKGDQIQIAP-PSNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPIST 340
+ QIQ+A S DLDS+S+IYE K LSGD ++ K LERPSPRR+P+S
Sbjct: 289 EHR-IQIQMATHVSTDLDSLSEIYERKSGLSGDEGNNGGKL------LERPSPRRSPLS- 340
Query: 341 ERMNPAMMNTGGMQQGRNSPYG 362
P M GG+ QGRNSP+G
Sbjct: 341 ----PMMNPNGGLIQGRNSPFG 358
>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
Length = 413
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 106/167 (63%), Gaps = 17/167 (10%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QP 92
K R+RWT ELHE FV+AV QLGG ++ATPK +++++ GLT+YH+KSHLQK+R + +P
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290
Query: 93 H--------KEFNDHSIKD--GLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRH 142
+E SI+D LD++ + + + +QMEVQ+RLHEQLE+QR
Sbjct: 291 ETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQAL------RLQMEVQKRLHEQLEIQRS 344
Query: 143 LQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVG 189
LQL+IE QG+Y+Q + EK + + + + AS K G+ A +VG
Sbjct: 345 LQLQIEKQGRYLQMMFEKQQKIQDNKSSSSEASPKQCNGSFAEVEVG 391
>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis
thaliana GN=At1g14600 PE=2 SV=2
Length = 255
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 20 CVQGDSGLV-----LTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGL 74
C + + G++ P PRLRWT ELH FV AV LGG KATPK ++++M VKGL
Sbjct: 4 CGRSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGL 63
Query: 75 TLYHLKSHLQKFR 87
T+ H+KSHLQ +R
Sbjct: 64 TISHVKSHLQMYR 76
>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1
SV=1
Length = 403
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 44/60 (73%)
Query: 35 PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
PR+RWT LH RFV AV LGG ++ATPK+++ +M VK LTL H+KSHLQ +R K +K
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279
>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2
PE=2 SV=1
Length = 388
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 35 PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
PR+RWT LH RFV AV LGG ++ATPK+++ +M VK LTL H+KSHLQ +R K K
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDK 273
>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica
GN=RL9 PE=2 SV=2
Length = 532
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 35 PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
PR+RWT LH RFV AV LGG ++ATPK+++ +M VK LTL H+KSHLQ +R K K
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384
Query: 95 EFNDHSIKDG 104
DG
Sbjct: 385 PAASSGPADG 394
>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4
PE=1 SV=1
Length = 276
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 35 PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
PR+RWT LH FV AV LGG ++ATPK+++ +M VK LTL H+KSHLQ +R K
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 161
>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3
PE=2 SV=1
Length = 322
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 35 PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
PR+RWT LH FV AV LGG ++ATPK+++ +M V+ LTL H+KSHLQ +R K K
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 7/91 (7%)
Query: 22 QGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKS 81
QGD ++ KPR+ W+VELH++FV AV QLG DKA PK I+ +M V GLT ++ S
Sbjct: 204 QGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVAS 262
Query: 82 HLQKFRL------GKQPHKEFNDHSIKDGLD 106
HLQK+R+ G H+ +HS G D
Sbjct: 263 HLQKYRIYLRRLGGVSQHQGNMNHSFMTGQD 293
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
KPR+ W+VELH++FV AV QLG +KA PK I+ +M V GLT ++ SHLQK+R+
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
T KPR+ W+ ELH++FV AV QLG DKA PK I+ +M ++GLT ++ SHLQK+RL
Sbjct: 191 TRKKPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRL 247
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
K R+ W++ELH++FV+AV +LG DKA PK I+ +M V GL+ ++ SHLQKFRL
Sbjct: 200 KSRVVWSIELHQQFVNAVNKLG-IDKAVPKRILELMNVPGLSRENVASHLQKFRL 253
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
K R+ WTVELH++FV AV QLG +KA PK I+ +M V+ LT ++ SHLQKFRL
Sbjct: 195 KQRVVWTVELHKKFVAAVNQLGY-EKAMPKKILDLMNVEKLTRENVASHLQKFRL 248
>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2
SV=1
Length = 386
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
KP++ WT ELH +FV AV QLG DKA P I+ +M VK LT +++ SHLQK+R
Sbjct: 147 KPKVDWTPELHRKFVQAVEQLGV-DKAVPSRILEIMNVKSLTRHNVASHLQKYR 199
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 4/58 (6%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVM----GVKGLTLYHLKSHLQKFR 87
KPR++WT ELH +F AV ++G +KA PKTI++ M V+GLT ++ SHLQK+R
Sbjct: 211 KPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYR 268
>sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2
SV=2
Length = 420
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
K ++ WT ELH RFV+AV QLG DKA P I+ +MGV LT +++ SHLQK+R
Sbjct: 153 KVKVDWTPELHRRFVEAVEQLGV-DKAVPSRILELMGVHCLTRHNVASHLQKYR 205
>sp|Q5NAN5|GLK2_ORYSJ Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica
GN=GLK2 PE=2 SV=1
Length = 539
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
K ++ WT ELH RFV AV QLG DKA P I+ +MG++ LT +++ SHLQK+R
Sbjct: 215 KVKVDWTPELHRRFVQAVEQLGI-DKAVPSRILELMGIECLTRHNIASHLQKYR 267
>sp|Q5Z5I4|GLK1_ORYSJ Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica
GN=GLK1 PE=2 SV=1
Length = 455
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 37 LRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
+ WT ELH RFV AV QLG DKA P I+ +MG+ LT +++ SHLQK+R
Sbjct: 183 VDWTPELHRRFVQAVEQLG-IDKAVPSRILEIMGIDSLTRHNIASHLQKYR 232
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
K RL WT +LH +F+ AV LG DKA PK I+ +M VK LT + SHLQK+R+
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLG-EDKAVPKKILGIMKVKHLTREQVASHLQKYRM 251
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89
T KPR+ WT ELH +F+ AV LG ++A PK I+ +M V LT ++ SHLQKFR+
Sbjct: 179 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 237
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
K RL WT +LH +F+ AV LG DKA PK I+ +M VK LT + SHLQK+R+
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLG-EDKAVPKKILGIMKVKHLTREQVASHLQKYRM 251
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
R+ W+ ELH +FV+AV Q+G KA PK I+ +M V LT ++ SHLQK+RL
Sbjct: 195 RVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 247
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 41/58 (70%), Gaps = 3/58 (5%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRV---MGVKGLTLYHLKSHLQKFRL 88
KPR+ WT ELH++F++A+ +GG +KA PK ++ M ++G+T ++ SHLQK R+
Sbjct: 215 KPRMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQKHRI 272
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
++ WT ELH++FV AV QLG D+A P I+ +M V LT +++ SHLQKFR
Sbjct: 298 KVDWTPELHKKFVQAVEQLGV-DQAIPSRILELMKVGTLTRHNVASHLQKFR 348
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
K +++WT LH+ F+ A+ +G DKA PK I+ M V LT ++ SHLQK+R+
Sbjct: 222 KKKIQWTDSLHDLFLQAIRHIGL-DKAVPKKILAFMSVPYLTRENVASHLQKYRI 275
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 23 GDSGLVLTTDPKPR-LRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKS 81
D G L+ PK + + WT L + F+ A+ +G DK PK I+ +M V LT ++ S
Sbjct: 213 SDDGESLSQPPKKKKIWWTNPLQDLFLQAIQHIGY-DKVVPKKILAIMNVPYLTRENVAS 271
Query: 82 HLQKFRL 88
HLQK+RL
Sbjct: 272 HLQKYRL 278
>sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis
thaliana GN=APRR4 PE=3 SV=1
Length = 292
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 84
++ K R+ W ELH+ F++AV LG ++A PK I+ VM V ++ ++ SHLQ
Sbjct: 219 SSAKKRRVVWDEELHQNFLNAVDFLG-LERAVPKKILDVMKVDYISRENVASHLQ 272
>sp|Q9C9F6|APRR6_ARATH Putative two-component response regulator-like APRR6 OS=Arabidopsis
thaliana GN=APRR6 PE=3 SV=2
Length = 755
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 39 WTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
W E H +F+ A++ LG D PK+I+ +M LT + SHLQK++
Sbjct: 227 WNSERHMKFIAAISILGEED-FRPKSILEIMNDPNLTHRQVGSHLQKYK 274
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1
SV=3
Length = 3598
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 20/164 (12%)
Query: 83 LQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRH 142
L+K + + F++ IK+ Q+ + S R++N + +V++ E+ E Q
Sbjct: 997 LRKLEIDVISARNFSEILIKEAEPAQKESLQSQI---RALNTLYDQVEQVHREKKEQQTV 1053
Query: 143 LQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGN-----QAVPDVGTMKDFCPP 197
LQ I+ +Q L++ Q L E+ TP S I N Q+ T+K+ C
Sbjct: 1054 LQSHID----LIQLRLKETDQWLTDLESNTPKSGISDIVNSNELFQSKSRFQTLKETCER 1109
Query: 198 LNFSQFQDLNLYGGD---QIDHLQQNMDRQS---SLDHGFMQSN 235
+QF+DLN GG+ Q+D L Q+ DR+S SL F + N
Sbjct: 1110 -ETTQFRDLNERGGELLLQMDEL-QDQDRESRYGSLAKQFTRIN 1151
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 35.0 bits (79), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93
K R RWT + HERF++A+ G + I +G K T ++SH QKF +
Sbjct: 22 KQRERWTEDEHERFLEALRLYG----RAWQRIEEHIGTK--TAVQIRSHAQKFFTKLEKE 75
Query: 94 KEFNDHSIKDGLDLQ 108
E + LD++
Sbjct: 76 AEVKGIPVCQALDIE 90
>sp|P36312|POL1_CPSMV RNA1 polyprotein OS=Cowpea severe mosaic virus (strain DG) PE=3 SV=1
Length = 1858
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 234 SNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATP------PCIGPQDDPFKGDQ 287
S+ ++ LG K+ P+ GG P+ DD L+ +AT C+ PQ+D F+
Sbjct: 1206 SSTDLRLGDKQYDPFVGGIQKYAEPMGILDDEVLRHVATDIVEEWFDCVDPQEDTFEEVD 1265
Query: 288 IQIA 291
+Q+A
Sbjct: 1266 LQVA 1269
>sp|Q5RAJ5|STK36_PONAB Serine/threonine-protein kinase 36 OS=Pongo abelii GN=STK36 PE=2
SV=1
Length = 1315
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 28 VLTTDPKPRLRWTVELHERF----VDAVTQLGGPDKATPKT 64
+LT DP+ RL W L+ F V +T+ GPD TP T
Sbjct: 234 LLTKDPRQRLSWPDLLYHPFIAGHVTIITETAGPDLGTPFT 274
>sp|Q6PRD1|GP179_HUMAN Probable G-protein coupled receptor 179 OS=Homo sapiens GN=GPR179
PE=1 SV=2
Length = 2367
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 86 FRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNEMQMEVQ------RRLHEQLEV 139
++LG P +E D +D LDLQ + + I + +E ++ ++L+ QLEV
Sbjct: 632 WKLGAPPREEMVDEVCEDELDLQHSGSYLGSSIASAWSEHSLDPGDIRDELKKLYAQLEV 691
Query: 140 QRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGT 190
H + A ++ +CQ L A F + Q D G+
Sbjct: 692 --HKTKEMAANNPHLPKKRGSSCQGLGRSFMRYLAEFPEALARQHSRDSGS 740
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,406,268
Number of Sequences: 539616
Number of extensions: 6332330
Number of successful extensions: 15290
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 15231
Number of HSP's gapped (non-prelim): 59
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)