Query 018015
Match_columns 362
No_of_seqs 193 out of 405
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 08:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 8.9E-29 3E-33 190.5 7.1 60 30-90 1-60 (64)
2 2hzd_A Transcriptional enhance 83.6 0.69 2.4E-05 37.2 2.9 56 33-89 3-74 (82)
3 2cu7_A KIAA1915 protein; nucle 83.3 3.3 0.00011 30.9 6.4 50 34-89 7-56 (72)
4 2yum_A ZZZ3 protein, zinc fing 83.2 2.1 7.3E-05 32.0 5.4 53 35-90 7-62 (75)
5 2yus_A SWI/SNF-related matrix- 83.0 2.9 0.0001 32.4 6.2 46 35-86 17-62 (79)
6 2xag_B REST corepressor 1; ami 81.9 2.3 7.9E-05 43.3 6.6 52 34-91 378-429 (482)
7 2iw5_B Protein corest, REST co 79.3 3.1 0.00011 39.0 6.1 54 31-90 128-181 (235)
8 2cqq_A RSGI RUH-037, DNAJ homo 75.9 7.1 0.00024 29.9 6.3 48 36-89 8-58 (72)
9 1x41_A Transcriptional adaptor 72.5 4 0.00014 29.5 3.9 51 33-88 5-55 (60)
10 3sjm_A Telomeric repeat-bindin 61.9 18 0.00061 26.8 5.7 50 30-82 5-54 (64)
11 2cqr_A RSGI RUH-043, DNAJ homo 56.8 26 0.00088 26.9 5.9 51 36-89 18-69 (73)
12 2elk_A SPCC24B10.08C protein; 53.0 13 0.00045 26.7 3.5 48 36-87 9-56 (58)
13 2kes_A Synphilin-1; synphillin 50.4 19 0.00063 26.4 3.9 24 128-151 15-42 (48)
14 1ity_A TRF1; helix-turn-helix, 48.7 43 0.0015 24.5 5.8 52 32-86 6-57 (69)
15 2yqk_A Arginine-glutamic acid 47.0 19 0.00064 26.5 3.6 45 33-82 6-50 (63)
16 2eqr_A N-COR1, N-COR, nuclear 45.9 18 0.00061 26.3 3.4 46 31-82 7-52 (61)
17 1guu_A C-MYB, MYB proto-oncoge 42.1 60 0.0021 22.2 5.5 46 36-86 3-48 (52)
18 2d9a_A B-MYB, MYB-related prot 39.4 98 0.0034 21.8 6.5 49 33-86 5-53 (60)
19 1wgx_A KIAA1903 protein; MYB D 34.8 81 0.0028 24.5 5.6 46 38-86 10-56 (73)
20 2crg_A Metastasis associated p 34.3 37 0.0013 25.6 3.6 48 31-83 3-50 (70)
21 2li6_A SWI/SNF chromatin-remod 29.7 9 0.00031 31.2 -0.6 44 41-87 49-96 (116)
22 2cjj_A Radialis; plant develop 29.5 92 0.0031 24.9 5.3 47 37-88 9-58 (93)
23 4eef_G F-HB80.4, designed hema 29.1 18 0.00063 28.6 1.1 46 36-84 20-66 (74)
24 1gvd_A MYB proto-oncogene prot 29.0 1.4E+02 0.0047 20.4 5.6 46 36-86 3-48 (52)
25 2lm1_A Lysine-specific demethy 27.8 21 0.00071 28.3 1.3 45 41-86 44-94 (107)
26 2rq5_A Protein jumonji; develo 27.7 22 0.00074 29.7 1.4 47 41-88 42-95 (121)
27 2dim_A Cell division cycle 5-l 26.9 1.8E+02 0.0062 21.0 6.5 49 33-86 6-54 (70)
28 2ba2_A D12_ORF131, hypothetica 24.8 60 0.0021 26.3 3.4 21 141-161 53-73 (85)
29 1c20_A DEAD ringer protein; DN 24.3 26 0.0009 28.8 1.3 46 41-87 52-104 (128)
30 2cxy_A BAF250B subunit, HBAF25 24.1 26 0.0009 28.8 1.3 45 41-86 51-101 (125)
31 2eqy_A RBP2 like, jumonji, at 24.0 29 0.001 28.5 1.5 46 41-87 42-93 (122)
32 1qgp_A Protein (double strande 23.8 94 0.0032 23.3 4.2 45 39-86 11-55 (77)
33 2jxj_A Histone demethylase jar 23.4 27 0.00093 27.1 1.2 45 41-86 36-86 (96)
34 1kkx_A Transcription regulator 23.1 20 0.0007 29.7 0.4 45 41-88 48-96 (123)
35 1nkd_A ROP; atomic resolution 22.7 41 0.0014 26.1 2.0 26 126-151 36-62 (65)
36 2jrz_A Histone demethylase jar 22.5 29 0.00098 28.3 1.2 45 41-86 40-90 (117)
37 2aje_A Telomere repeat-binding 20.3 1.8E+02 0.0063 23.7 5.6 50 31-83 8-59 (105)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=8.9e-29 Score=190.50 Aligned_cols=60 Identities=48% Similarity=0.796 Sum_probs=57.4
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcCC
Q 018015 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90 (362)
Q Consensus 30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~ 90 (362)
++++|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999 7999999999999999999999999999999875
No 2
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=83.64 E-value=0.69 Score=37.21 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=35.0
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhH----------------HHHhhCCCCccHHHHHHhhhhhhcC
Q 018015 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKT----------------IMRVMGVKGLTLYHLKSHLQKFRLG 89 (362)
Q Consensus 33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~----------------IL~lM~V~GLT~~hVKSHLQKYRl~ 89 (362)
.+..=+|.++|-..|++|++..-=-...+-+- |...-| +-=|+.+|.||||.-|..
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHH
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHH
Confidence 34556899999999999998875111222210 111111 333788999999976654
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=83.32 E-value=3.3 Score=30.92 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=39.9
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcC
Q 018015 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89 (362)
Q Consensus 34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 89 (362)
..+-.||+|=++.|+++|..+|- .=+.|-+.| +|=|-.+|+.|-++|-..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 34668999999999999999992 345666654 688999999998888543
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.25 E-value=2.1 Score=31.97 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=40.1
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChh---HHHHhhCCCCccHHHHHHhhhhhhcCC
Q 018015 35 PRLRWTVELHERFVDAVTQLGGPDKATPK---TIMRVMGVKGLTLYHLKSHLQKFRLGK 90 (362)
Q Consensus 35 pRLrWT~ELH~rFV~AV~qLGG~dkAtPK---~IL~lM~V~GLT~~hVKSHLQKYRl~~ 90 (362)
.+=.||+|=++.|+++|..+| .+...|. .|-+.| +|=|-.+|+.|-++|-...
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 455899999999999999999 2222233 455554 6789999999999996543
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=83.04 E-value=2.9 Score=32.44 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=38.4
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhh
Q 018015 35 PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (362)
Q Consensus 35 pRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (362)
.+-.||+|=+++|++||+.+|+ .=+.|-+.|+ +=|..+++.|-++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 4668999999999999999993 2357777765 68999999998877
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=81.87 E-value=2.3 Score=43.30 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=43.5
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcCCC
Q 018015 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ 91 (362)
Q Consensus 34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~~ 91 (362)
+..-+||.|=|..|++||.+.|- .=+.|-+.++-. |..+|++|-++||....
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 45789999999999999999992 456788887654 89999999999987653
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=79.26 E-value=3.1 Score=39.03 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=44.1
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcCC
Q 018015 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90 (362)
Q Consensus 31 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~ 90 (362)
+..+..-+||+|=++.|++|+...| . .=..|-+. |.+=|..+|++|-.+||...
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYG--K--DW~~IAk~--VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYG--R--DFQAISDV--IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHS--S--CHHHHHHH--HSSCCHHHHHHHHHHTTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHC--c--CHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 4456778999999999999999999 2 25577776 56789999999999998643
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=75.89 E-value=7.1 Score=29.91 Aligned_cols=48 Identities=17% Similarity=0.361 Sum_probs=38.0
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhH---HHHhhCCCCccHHHHHHhhhhhhcC
Q 018015 36 RLRWTVELHERFVDAVTQLGGPDKATPKT---IMRVMGVKGLTLYHLKSHLQKFRLG 89 (362)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~GLT~~hVKSHLQKYRl~ 89 (362)
+-.||.|=+++|+.|+..+++ -||.+ |-+.| |=|..+|+.|-+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 347999999999999999983 35664 66666 56999999998877554
No 9
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=72.51 E-value=4 Score=29.52 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=38.9
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhc
Q 018015 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88 (362)
Q Consensus 33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 88 (362)
.-.|-.||+|=.+++++||..+| .. .=+.|-+.| +|=|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~~--~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-FG--NWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-TT--CHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-cC--cHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34556899999999999999999 21 234666666 57899999999887743
No 10
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=61.93 E-value=18 Score=26.80 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=34.9
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHh
Q 018015 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82 (362)
Q Consensus 30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSH 82 (362)
++..+.|-.||+|=-+..+++|+++|- . .=+.|.+.+...|=|-.+++-+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHH
Confidence 445566778999999999999999992 1 2346877777777777777643
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=56.78 E-value=26 Score=26.91 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=39.0
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhh-CCCCccHHHHHHhhhhhhcC
Q 018015 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVM-GVKGLTLYHLKSHLQKFRLG 89 (362)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~V~GLT~~hVKSHLQKYRl~ 89 (362)
+=.||.|=...|++||..+|- -+|..--++= -|+|=|-.+|+.|-+.+...
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 346999999999999999992 3777544332 25799999999998876543
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=52.95 E-value=13 Score=26.71 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=35.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhh
Q 018015 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87 (362)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 87 (362)
+-.||+|=++++++||++.| . ..=+.|-+.|+. +=|-.+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G-~--~~W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG-L--GNWADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT-T--TCHHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 44699999999999999999 1 123456666642 568888888877663
No 13
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=50.40 E-value=19 Score=26.39 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=18.1
Q ss_pred HHHHHHHHH----HHHHHHHHHhHHHHh
Q 018015 128 EVQRRLHEQ----LEVQRHLQLRIEAQG 151 (362)
Q Consensus 128 EVQrrLHEQ----LEVQR~LQLRIEAQG 151 (362)
.+-|+|+|| +.+|.+||.-+|+|-
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345778887 568888988888874
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=48.65 E-value=43 Score=24.50 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=40.0
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhh
Q 018015 32 DPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (362)
Q Consensus 32 ~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (362)
.++.|-.||+|=-+..+++|+.+|. . .=+.|.+.|+..|=|-.+++-+-..|
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE-G--NWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS-S--CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC-C--cHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 4567889999999999999999991 1 23578888765577888888765555
No 15
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.03 E-value=19 Score=26.55 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=30.6
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHh
Q 018015 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82 (362)
Q Consensus 33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSH 82 (362)
...+-.||+|=|+.|.+|+...| .. =..|-+.| |+.=|..+|..+
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yG--Kd--f~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYG--KN--FFRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTC--SC--HHHHHHHS-CTTSCHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhC--cc--HHHHHHHH-cCCCcHHHHHHH
Confidence 34456899999999999999999 21 23444311 455676666544
No 16
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.92 E-value=18 Score=26.28 Aligned_cols=46 Identities=17% Similarity=0.041 Sum_probs=34.7
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHh
Q 018015 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82 (362)
Q Consensus 31 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSH 82 (362)
..++..-.||+|=|+.|++|+...| .+ =..|-.. |++=|..+|..|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~g--k~--w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHP--KN--FGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHST--TC--HHHHHHH--CTTSCHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhC--CC--HHHHHHH--cCCCCHHHHHHH
Confidence 4567778999999999999999998 22 3456544 467788887755
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=42.10 E-value=60 Score=22.20 Aligned_cols=46 Identities=28% Similarity=0.302 Sum_probs=34.8
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhh
Q 018015 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (362)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (362)
|-.||+|=.+.++++|.++|- ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 1334666654 577888888776655
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=39.38 E-value=98 Score=21.78 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=36.4
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhh
Q 018015 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (362)
Q Consensus 33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (362)
...|-.||+|=.++++++|.++|- . .=+.|-+.| +|=|-.+++.|-.+|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQ-Q--DWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCT-T--CHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 456778999999999999999992 1 224566664 577888888776655
No 19
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=34.84 E-value=81 Score=24.47 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChhHHHHhh-CCCCccHHHHHHhhhhh
Q 018015 38 RWTVELHERFVDAVTQLGGPDKATPKTIMRVM-GVKGLTLYHLKSHLQKF 86 (362)
Q Consensus 38 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~V~GLT~~hVKSHLQKY 86 (362)
.||.+=+.+|.+|+..++ +.+|-.--++= -|+|=|.+.|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 599999999999999887 34787654432 36788999998875544
No 20
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=34.32 E-value=37 Score=25.55 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=34.0
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhh
Q 018015 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83 (362)
Q Consensus 31 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHL 83 (362)
+.++..-.||+|=|+.|.+|+...| .. =..|-+. =|+.-|..+|..+-
T Consensus 3 ~~r~~~~~WT~eE~~~Fe~~l~~yG--Kd--f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 3 SGSSGMEEWSASEACLFEEALEKYG--KD--FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHTC--SC--HHHHHHT-TCSSSCHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHHHHHHHHhC--cc--HHHHHHH-HcCCCCHHHHHHHH
Confidence 3456777999999999999999999 22 3344431 15667777776664
No 21
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.74 E-value=9 Score=31.21 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCChh----HHHHhhCCCCccHHHHHHhhhhhh
Q 018015 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLTLYHLKSHLQKFR 87 (362)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~GLT~~hVKSHLQKYR 87 (362)
-+|+.-|.. |..+||.++.+-+ .|.+.|+++. -..|+.|-.||=
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L 96 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRIL 96 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHH
Confidence 578888875 7899998876543 5889999987 567888877763
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=29.45 E-value=92 Score=24.86 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=36.5
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChhH---HHHhhCCCCccHHHHHHhhhhhhc
Q 018015 37 LRWTVELHERFVDAVTQLGGPDKATPKT---IMRVMGVKGLTLYHLKSHLQKFRL 88 (362)
Q Consensus 37 LrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~GLT~~hVKSHLQKYRl 88 (362)
=.||.|=.+.|++|+..+|- -+|.. |-+. |+|=|-.+|+.|-+++..
T Consensus 9 ~~WT~eEd~~L~~al~~~~~---~~~~rW~~IA~~--vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDK---DTPDRWANVARA--VEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHH--STTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 36999999999999999982 25553 4444 468999999999887643
No 23
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=29.06 E-value=18 Score=28.57 Aligned_cols=46 Identities=28% Similarity=0.308 Sum_probs=34.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhh-CCCCccHHHHHHhhh
Q 018015 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVM-GVKGLTLYHLKSHLQ 84 (362)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~V~GLT~~hVKSHLQ 84 (362)
--.||.+=.+.|..|+.... +-||.+--++- -|+|=|.+.|+.|-|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 34699999999999998875 45676544332 267899999999965
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=28.96 E-value=1.4e+02 Score=20.41 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=33.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhh
Q 018015 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (362)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (362)
|-.||+|=.+.++++|.++|- . .=..|-+.| +|=|-.+++.|-..|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 1 123555554 577888888776655
No 25
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=27.81 E-value=21 Score=28.31 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCChh----HHHHhhCCCCcc--HHHHHHhhhhh
Q 018015 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKF 86 (362)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~GLT--~~hVKSHLQKY 86 (362)
-+||+-|.. |..+||.++.+-+ .|.+.|+++.-| ..+|+.|-.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 578998886 6789999876543 588899987532 34566666655
No 26
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=27.71 E-value=22 Score=29.69 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCChh----HHHHhhCCCCcc---HHHHHHhhhhhhc
Q 018015 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT---LYHLKSHLQKFRL 88 (362)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~GLT---~~hVKSHLQKYRl 88 (362)
-+|+.-|. +|..+||.++.|-+ .|.+.|+++... .+.++.|-.||=.
T Consensus 42 lDL~~Ly~-~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 42 LDLACFFR-LINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp CCHHHHHH-HHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred ccHHHHHH-HHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 36777775 67799998877654 578888886532 4567777666643
No 27
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.95 E-value=1.8e+02 Score=21.05 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=37.6
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhh
Q 018015 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (362)
Q Consensus 33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (362)
...|=.||+|=.++++++|..+|- ..=+.|-+.|+ |=|-.+++-|-..|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 345668999999999999999991 12356777765 77888888876665
No 28
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=24.85 E-value=60 Score=26.35 Aligned_cols=21 Identities=48% Similarity=0.599 Sum_probs=17.9
Q ss_pred HHHHHhHHHHhhHHHHHHHHH
Q 018015 141 RHLQLRIEAQGKYMQSILEKA 161 (362)
Q Consensus 141 R~LQLRIEAQGKYLQsiLEkA 161 (362)
+.||+-+.|||+-|+.||+.-
T Consensus 53 keLq~eqkaQg~tl~lil~tL 73 (85)
T 2ba2_A 53 KELQVEQKAQGKTLQLILEAL 73 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999999988754
No 29
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=24.25 E-value=26 Score=28.82 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCChh----HHHHhhCCCCc-c--HHHHHHhhhhhh
Q 018015 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGL-T--LYHLKSHLQKFR 87 (362)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~GL-T--~~hVKSHLQKYR 87 (362)
-+||.-|.. |..+||.++.+-+ .|.+.|+++.- | ...|+.|-.||=
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L 104 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYL 104 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHT
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 478988886 7799998876543 58889998652 2 467777777663
No 30
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=24.13 E-value=26 Score=28.78 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCChh----HHHHhhCCCCcc--HHHHHHhhhhh
Q 018015 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKF 86 (362)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~GLT--~~hVKSHLQKY 86 (362)
-+||+-|.. |..+||.++.+-+ .|.+.|+++.-| ...|+.|-.||
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478888875 7799998876543 588899998642 34566665555
No 31
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.96 E-value=29 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCChh----HHHHhhCCCCcc--HHHHHHhhhhhh
Q 018015 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKFR 87 (362)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~GLT--~~hVKSHLQKYR 87 (362)
-+|++-|+. |..+||.++.+-+ .|.+.|+++.-+ ..+|+.|-.||=
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 478888875 7899998876543 588899986533 246677666663
No 32
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.83 E-value=94 Score=23.28 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=35.7
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhh
Q 018015 39 WTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (362)
Q Consensus 39 WT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (362)
=|+++.++-++++...|--+..|.+.|-+.++| +...|..||.+-
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L 55 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 367888889999999993356899999999996 566777777655
No 33
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=23.39 E-value=27 Score=27.10 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCChh----HHHHhhCCCCcc--HHHHHHhhhhh
Q 018015 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKF 86 (362)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~GLT--~~hVKSHLQKY 86 (362)
-+||.-|.. |..+||.++.+-+ .|.+.|+++.-+ ..+|+.|=.||
T Consensus 36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 478888875 7799999876643 588899986432 34566665555
No 34
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=23.14 E-value=20 Score=29.72 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCChh----HHHHhhCCCCccHHHHHHhhhhhhc
Q 018015 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLTLYHLKSHLQKFRL 88 (362)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~GLT~~hVKSHLQKYRl 88 (362)
-+|++-|.. |..+||.++.+-+ .|.+.|+++. -..|+.|-.||=+
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 96 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence 478887875 7899999887753 5888999987 6778887776644
No 35
>1nkd_A ROP; atomic resolution structure alpha-helix bundle, transcription regulation; 1.09A {Escherichia coli} SCOP: a.30.1.1 PDB: 1rpo_A 1rop_A 1rpr_A 2ghy_A 1b6q_A 1gmg_A 2ijk_A 1gto_A 2ijj_A 2ijh_A 2iji_A 3k79_A 1qx8_A 1f4n_A 1f4m_A
Probab=22.70 E-value=41 Score=26.12 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhHHHHh
Q 018015 126 QMEVQRRLHEQLE-VQRHLQLRIEAQG 151 (362)
Q Consensus 126 QmEVQrrLHEQLE-VQR~LQLRIEAQG 151 (362)
+-..=.||||+-| ++++|+-|+++.+
T Consensus 36 ~A~~CE~LHe~AE~L~~~l~~r~~~~~ 62 (65)
T 1nkd_A 36 QADICESLHDHADELYRSCLARFGDDG 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455678999976 7999999998754
No 36
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=22.46 E-value=29 Score=28.30 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCChh----HHHHhhCCCCcc--HHHHHHhhhhh
Q 018015 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKF 86 (362)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~GLT--~~hVKSHLQKY 86 (362)
-+||+-|+. |..+||.++.+-+ .|.+.|+++.-| ..+|+.|-.||
T Consensus 40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478888875 7799998876543 588899986432 35677776666
No 37
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=20.32 E-value=1.8e+02 Score=23.70 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=37.7
Q ss_pred CCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhC--CCCccHHHHHHhh
Q 018015 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG--VKGLTLYHLKSHL 83 (362)
Q Consensus 31 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~--V~GLT~~hVKSHL 83 (362)
..++.|-.||+|=-+..+++|+++|. . .=+.|++.+. .+|=|--+||.+-
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdrW 59 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDKW 59 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHHH
Confidence 45788999999999999999999993 1 2346777552 3777888888653
Done!