Query 018016
Match_columns 362
No_of_seqs 112 out of 136
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 08:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swf_A CGMP-gated cation chann 68.9 19 0.00066 28.4 7.3 52 10-61 3-54 (74)
2 3oja_B Anopheles plasmodium-re 67.4 15 0.0005 36.4 8.0 27 77-105 557-583 (597)
3 3mq9_A Bone marrow stromal ant 63.6 16 0.00054 35.4 7.3 18 78-95 443-460 (471)
4 1gmj_A ATPase inhibitor; coile 55.9 52 0.0018 26.4 7.8 42 18-59 37-78 (84)
5 3oja_B Anopheles plasmodium-re 52.8 73 0.0025 31.4 10.1 22 38-59 536-557 (597)
6 3okq_A BUD site selection prot 52.1 49 0.0017 28.9 7.6 90 6-95 13-124 (141)
7 1szi_A TIP47, mannose-6-phosph 51.2 68 0.0023 30.1 9.0 105 6-119 130-235 (247)
8 3trt_A Vimentin; cytoskeleton, 50.8 76 0.0026 23.7 7.8 23 17-39 34-56 (77)
9 1wlq_A Geminin; coiled-coil; 2 50.5 60 0.002 26.1 7.3 31 3-33 27-57 (83)
10 3oa7_A Head morphogenesis prot 47.8 36 0.0012 31.4 6.4 50 4-64 27-76 (206)
11 1m1j_C Fibrinogen gamma chain; 46.6 76 0.0026 31.7 9.1 25 9-33 43-67 (409)
12 2zxx_A Geminin; coiled-coil, c 46.5 74 0.0025 25.3 7.2 31 2-32 22-52 (79)
13 2wvr_A Geminin; DNA replicatio 43.2 76 0.0026 29.3 7.8 58 2-60 103-160 (209)
14 1ses_A Seryl-tRNA synthetase; 40.7 68 0.0023 31.7 7.7 44 16-59 40-84 (421)
15 3na7_A HP0958; flagellar bioge 37.5 1.5E+02 0.0051 26.9 8.9 21 157-177 196-216 (256)
16 3swy_A Cyclic nucleotide-gated 37.4 1.1E+02 0.0039 21.9 6.6 42 12-53 3-44 (46)
17 3lay_A Zinc resistance-associa 35.2 1.2E+02 0.0042 26.8 7.7 45 40-95 86-130 (175)
18 2avr_X Adhesion A; antiparalle 34.4 2.1E+02 0.0073 24.2 9.4 37 2-38 25-61 (119)
19 3etw_A Adhesin A; antiparallel 33.1 2.2E+02 0.0076 24.0 9.4 38 2-39 25-62 (119)
20 1ugo_A BCL2-associated athanog 32.9 83 0.0028 25.9 5.7 79 13-105 17-95 (99)
21 3tnu_B Keratin, type II cytosk 31.6 49 0.0017 27.4 4.3 49 11-59 8-56 (129)
22 2w83_C C-JUN-amino-terminal ki 31.5 84 0.0029 25.0 5.3 19 41-59 46-64 (77)
23 2dq0_A Seryl-tRNA synthetase; 30.4 1.3E+02 0.0045 30.0 7.9 41 19-59 46-89 (455)
24 2dfs_A Myosin-5A; myosin-V, in 29.4 85 0.0029 34.8 6.8 12 44-55 989-1000(1080)
25 1uk5_A BAG-family molecular ch 29.4 1.7E+02 0.0059 24.4 7.2 80 13-104 29-108 (111)
26 1ez3_A Syntaxin-1A; three heli 27.9 2.2E+02 0.0076 22.4 8.4 46 11-57 16-61 (127)
27 3ghg_A Fibrinogen alpha chain; 27.7 3E+02 0.01 28.9 10.0 32 76-115 174-205 (562)
28 3tnu_A Keratin, type I cytoske 27.4 50 0.0017 27.5 3.6 49 11-59 10-58 (131)
29 3ghg_A Fibrinogen alpha chain; 27.2 1.8E+02 0.0062 30.4 8.3 25 10-34 63-87 (562)
30 1wle_A Seryl-tRNA synthetase; 26.1 2.1E+02 0.007 29.2 8.5 40 20-59 86-136 (501)
31 1deq_A Fibrinogen (alpha chain 26.1 1.8E+02 0.0062 29.1 7.8 41 9-49 62-102 (390)
32 1deq_A Fibrinogen (alpha chain 26.1 1.7E+02 0.0059 29.3 7.7 17 43-59 138-154 (390)
33 4aj5_K Spindle and kinetochore 26.0 2.1E+02 0.0071 24.5 7.2 51 11-61 47-97 (123)
34 1m62_A BAG-family molecular ch 23.9 2.7E+02 0.0092 22.2 7.1 70 14-95 11-80 (87)
35 4gkw_A Spindle assembly abnorm 23.7 2.7E+02 0.0092 24.4 7.6 41 18-58 46-86 (167)
36 1uii_A Geminin; human, DNA rep 23.6 2.3E+02 0.008 22.7 6.6 28 3-30 35-62 (83)
37 3t97_B Nuclear pore complex pr 22.9 2.1E+02 0.0071 22.0 6.0 38 17-58 13-50 (65)
38 2efr_A General control protein 22.7 3.8E+02 0.013 23.3 9.8 13 13-25 13-25 (155)
39 3zcc_A HAMP, osmolarity sensor 22.3 2.2E+02 0.0075 20.4 8.9 24 14-37 37-60 (114)
40 3qne_A Seryl-tRNA synthetase, 21.9 2.3E+02 0.0078 28.9 7.9 17 241-257 313-329 (485)
41 1kdl_A YOPD protein; yersinia, 21.9 45 0.0016 21.5 1.7 16 243-258 3-18 (26)
42 2rjz_A PILO protein; structura 21.7 1.8E+02 0.0063 24.5 6.2 51 37-95 13-63 (147)
43 1ytz_I Troponin I; muscle, THI 20.9 4E+02 0.014 24.0 8.4 81 6-101 23-104 (182)
44 3vkg_A Dynein heavy chain, cyt 20.5 1.8E+02 0.0061 36.4 7.7 17 127-143 2084-2100(3245)
45 2dq3_A Seryl-tRNA synthetase; 20.2 1.1E+02 0.0039 30.0 5.2 39 20-58 46-87 (425)
46 1w1n_A Phosphatidylinositol 3- 20.1 35 0.0012 22.7 1.0 24 11-34 4-27 (33)
No 1
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=68.92 E-value=19 Score=28.36 Aligned_cols=52 Identities=25% Similarity=0.258 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhh
Q 018016 10 KVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSL 61 (362)
Q Consensus 10 ~~~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~~ 61 (362)
+.++|-|+++-..+..||++.+..++-...--..|++|+..|...++.+...
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 3567778877778889999988877766666667899999999998876543
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.43 E-value=15 Score=36.41 Aligned_cols=27 Identities=7% Similarity=-0.034 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhcCCC
Q 018016 77 SKLADKLEEDLQKAQCLIYDGDASAFLPS 105 (362)
Q Consensus 77 ~~~~~~l~~~i~~~~~~~~~~dme~~LP~ 105 (362)
.+.++++++++...+..+. +.+..+++
T Consensus 557 ~~~~~~l~~e~~~~~~~~~--~l~~~~~~ 583 (597)
T 3oja_B 557 RAKQAELRQETSLKRQKVK--QLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHTTC-
T ss_pred hhHHHHHHHHHHHHHHHHH--HHHHHhcC
Confidence 3444555555555555555 55566653
No 3
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=63.65 E-value=16 Score=35.42 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhcccc
Q 018016 78 KLADKLEEDLQKAQCLIY 95 (362)
Q Consensus 78 ~~~~~l~~~i~~~~~~~~ 95 (362)
+.+++++.+|.+....+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777766666665
No 4
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=55.89 E-value=52 Score=26.45 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHh
Q 018016 18 RVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (362)
Q Consensus 18 ~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~ 59 (362)
+-.|.+.+|.+....-|++..+|.+.|++.+...+..|+.++
T Consensus 37 kekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344666778777777788887777777777777777776664
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.84 E-value=73 Score=31.40 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=10.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHh
Q 018016 38 SSEEQSLRQRALSLDSNIRRLR 59 (362)
Q Consensus 38 ~~e~~~l~k~~~~l~~~l~r~~ 59 (362)
..+.+.++++...+...++..+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~ 557 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKR 557 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhh
Confidence 3444444444445555444433
No 6
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=52.15 E-value=49 Score=28.91 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=56.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH---------------HhhhchhhHHHHHHHHHHHHHHHHHhhhhhccccc--
Q 018016 6 SNCEKVEEEEVERVVEEAKELQEAAATL---------------INRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISS-- 68 (362)
Q Consensus 6 ~~~~~~~~~e~~~~lee~~~Lq~~~~s~---------------i~rq~~e~~~l~k~~~~l~~~l~r~~~~~~~~~~~-- 68 (362)
++|-+.+.++...++..+.+||+..-.. +....++.+.+.+.|+.+...|++-++.=...=|+
T Consensus 13 ~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL 92 (141)
T 3okq_A 13 EKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAEL 92 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence 5788899999999999999999987542 33344555666666666666665544321110000
Q ss_pred -----cccccccCHHHHHHHHHHHHHHhcccc
Q 018016 69 -----TNNLLRFDSKLADKLEEDLQKAQCLIY 95 (362)
Q Consensus 69 -----~~~~~~~~~~~~~~l~~~i~~~~~~~~ 95 (362)
+........+++.+|+++++.+...|.
T Consensus 93 ~~VceEQqfl~~QedL~~DL~eDL~ka~etf~ 124 (141)
T 3okq_A 93 DKVCEEQQFLTLQEELILDLKEDLGKALETFD 124 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122245678888888888877775
No 7
>1szi_A TIP47, mannose-6-phosphate receptor binding protein 1; 4-helix bundle, alpha/beta domain, PAT protein, lipid binding, peptide binding; 2.80A {Mus musculus} SCOP: a.24.23.1
Probab=51.17 E-value=68 Score=30.13 Aligned_cols=105 Identities=12% Similarity=0.217 Sum_probs=69.2
Q ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCHHHHHHHH
Q 018016 6 SNCEKVEEEEVERVVEEA-KELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLE 84 (362)
Q Consensus 6 ~~~~~~~~~e~~~~lee~-~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (362)
+.|.|.++.+.=..+-.+ ..||+.|.+.++-...==..+++++.........+-...... .--+++.++.+.+-+
T Consensus 130 ~~~~E~~EsrtL~~arsLtqqLqstc~~lvssvqGLP~~vQdq~~~a~~~a~eL~s~fs~a----~Sf~Dl~~~~L~qsr 205 (247)
T 1szi_A 130 PAKPEQVEARALSMFRDITQQLQSMCVALGASIQGLPSHVREQAQQARSQVNDLQATFSGI----HSFQDLSAGVLAQTR 205 (247)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHGGGC----CSGGGCCHHHHHHHH
T ss_pred cchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhh----cchhhcCHHHHHHhH
Confidence 345566666655555444 479999999999887666667777776666654433222221 111345788899999
Q ss_pred HHHHHHhcccccchhhhcCCCCCCCccceeecccc
Q 018016 85 EDLQKAQCLIYDGDASAFLPSKAQGAFVKMFIGPI 119 (362)
Q Consensus 85 ~~i~~~~~~~~~~dme~~LP~k~nG~yL~liLG~v 119 (362)
..+.+++..+. ++-.++= |..=|+-++|+.
T Consensus 206 ~~l~~~~~sld--~v~d~l~---~n~PL~WLVGPF 235 (247)
T 1szi_A 206 ERIARAREALD--NTVEYVA---QNTPAMWLVGPF 235 (247)
T ss_dssp HHHHHHHHHHH--HHHHHHH---TCCCTTCEEEEE
T ss_pred HHHHHHHHHHH--HHHHHHH---hCCCccccccCc
Confidence 99999999887 7777763 446677777764
No 8
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=50.84 E-value=76 Score=23.75 Aligned_cols=23 Identities=4% Similarity=0.107 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhch
Q 018016 17 ERVVEEAKELQEAAATLINRTSS 39 (362)
Q Consensus 17 ~~~lee~~~Lq~~~~s~i~rq~~ 39 (362)
..+.+|+...-......+...+.
T Consensus 34 ~~k~eel~~~~~~~~~~l~~~k~ 56 (77)
T 3trt_A 34 KSKFADLSEAANRNNDALRQAKQ 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555544444444444444433
No 9
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=50.46 E-value=60 Score=26.11 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=19.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018016 3 EKRSNCEKVEEEEVERVVEEAKELQEAAATL 33 (362)
Q Consensus 3 ~~~~~~~~~~~~e~~~~lee~~~Lq~~~~s~ 33 (362)
|+|.-++.+..+|-+.+.+++..+++..++.
T Consensus 27 E~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~L 57 (83)
T 1wlq_A 27 EQRRKALYEALKENEKLHKEIEQKDSEIARL 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777776666666666554443
No 10
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=47.82 E-value=36 Score=31.42 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=35.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhhhc
Q 018016 4 KRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHS 64 (362)
Q Consensus 4 ~~~~~~~~~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~~~~~ 64 (362)
.|-.+...+++|..+++.|..+|+..+++ ++ ..+.+|.+++++++...+.
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~dl~~s~~~----l~-------ae~~~L~~~l~kLeGn~se 76 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYNDLTKSHNT----LS-------KELDNLRSRFGNLEGNTSE 76 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------HHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------hHHHHHHHHHHHccCCHHh
Confidence 35566778888999999999999877665 33 4666777777776644443
No 11
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.59 E-value=76 Score=31.69 Aligned_cols=25 Identities=8% Similarity=-0.044 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 018016 9 EKVEEEEVERVVEEAKELQEAAATL 33 (362)
Q Consensus 9 ~~~~~~e~~~~lee~~~Lq~~~~s~ 33 (362)
.|.+.+|++.+-+++..|-..|...
T Consensus 43 LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 43 IEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777788888888888888777766
No 12
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=46.47 E-value=74 Score=25.27 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018016 2 DEKRSNCEKVEEEEVERVVEEAKELQEAAAT 32 (362)
Q Consensus 2 ~~~~~~~~~~~~~e~~~~lee~~~Lq~~~~s 32 (362)
.|+|..++.+..+|=+.+.+++..+++.+..
T Consensus 22 AE~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~ 52 (79)
T 2zxx_A 22 AEQRRKALYEALKENEKLHKEIEQKDSEIAR 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888888888777776643
No 13
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=43.21 E-value=76 Score=29.35 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=47.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhh
Q 018016 2 DEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRS 60 (362)
Q Consensus 2 ~~~~~~~~~~~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~ 60 (362)
.|+|.-|+.+..+|-+.+.+++.+|++..+..-.. -.+...|..+++.|...|.++..
T Consensus 103 AE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeE-n~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 103 AEKRRKALYEALKENEKLHKEIEQKDNEIARLKKE-NKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 47888899999999999999999999988776555 45677788888888888888753
No 14
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=40.69 E-value=68 Score=31.66 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHHHHHHHh
Q 018016 16 VERVVEEAKELQEAAATLINR-TSSEEQSLRQRALSLDSNIRRLR 59 (362)
Q Consensus 16 ~~~~lee~~~Lq~~~~s~i~r-q~~e~~~l~k~~~~l~~~l~r~~ 59 (362)
+...+|++++-++.++..|.+ ...+.++|..+.++++..|+.++
T Consensus 40 ~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 40 LKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 334556666667777777774 33445677777777777777654
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=37.47 E-value=1.5e+02 Score=26.90 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=15.1
Q ss_pred HHHHhhcCCCCCchHHHHHHH
Q 018016 157 LRSWIWDGCLPAFPVQLYQAW 177 (362)
Q Consensus 157 ~~~~~~d~~~~~~~~~~~~fl 177 (362)
+...+|.||+..+|.+.++-+
T Consensus 196 v~~~~C~GC~~~lppq~~~~i 216 (256)
T 3na7_A 196 IKKQACGGCFIRLNDKIYTEV 216 (256)
T ss_dssp CBTTBCTTTCCBCCHHHHHHH
T ss_pred eeCCccCCCCeeeCHHHHHHH
Confidence 345678899988887776643
No 16
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=37.37 E-value=1.1e+02 Score=21.90 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 018016 12 EEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDS 53 (362)
Q Consensus 12 ~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~ 53 (362)
++|-|++.-..+..||++-+..++-...--..|++|+..|..
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666677778887776665544444455666655543
No 17
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=35.15 E-value=1.2e+02 Score=26.83 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHhcccc
Q 018016 40 EEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQKAQCLIY 95 (362)
Q Consensus 40 e~~~l~k~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 95 (362)
+..+|++++.+....|+.+- . .++. |++.++++.++|.+.+..+.
T Consensus 86 ~~~~Lr~ql~akr~EL~aL~---~-----a~~~---DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNALL---T-----ASSP---DTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---T-----SSSC---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---h-----CCCC---CHHHHHHHHHHHHHHHHHHH
Confidence 34456667777776766543 1 1122 67777777777766665554
No 18
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=34.40 E-value=2.1e+02 Score=24.22 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=31.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018016 2 DEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTS 38 (362)
Q Consensus 2 ~~~~~~~~~~~~~e~~~~lee~~~Lq~~~~s~i~rq~ 38 (362)
++.|-|=++.++|.+.+.|.+.++++..+...+++..
T Consensus 25 E~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~ 61 (119)
T 2avr_X 25 EEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQ 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999999888864
No 19
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=33.12 E-value=2.2e+02 Score=24.01 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=30.8
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 018016 2 DEKRSNCEKVEEEEVERVVEEAKELQEAAATLINRTSS 39 (362)
Q Consensus 2 ~~~~~~~~~~~~~e~~~~lee~~~Lq~~~~s~i~rq~~ 39 (362)
++-|=|-++...|.+.+.|.+.++++..+...+.+..+
T Consensus 25 E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~ 62 (119)
T 3etw_A 25 EEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQA 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888889999999999999999888887654
No 20
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=32.94 E-value=83 Score=25.85 Aligned_cols=79 Identities=9% Similarity=0.125 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHhc
Q 018016 13 EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQKAQC 92 (362)
Q Consensus 13 ~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 92 (362)
.+.+.++..|+.+|+..|..++.+.+. ++-.-|...|.++--.+.+. + .++ +++..+.=+..+++.|+
T Consensus 17 i~kI~~I~~ev~~L~~~V~~f~g~k~d------key~~L~E~L~k~LLkLD~I-e-teG----~~~iR~~RK~~Vk~iQ~ 84 (99)
T 1ugo_A 17 ISRLQEIQREVKAIEPQVVGFSGLSDD------KNYKRLERILTKQLFEIDSV-D-TEG----KGDIQQARKRAAQETER 84 (99)
T ss_dssp HHHHHHHHHHHHHSHHHHHTCCCCTTS------SHHHHHHHHHHHHHHHHHHS-C-CSS----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchh------HHHHHHHHHHHHHHHHHcCc-C-cCC----cHHHHHHHHHHHHHHHH
Confidence 345677788888999999998876532 45555666665543233332 1 111 34444444566788899
Q ss_pred ccccchhhhcCCC
Q 018016 93 LIYDGDASAFLPS 105 (362)
Q Consensus 93 ~~~~~dme~~LP~ 105 (362)
.+. .+++..|.
T Consensus 85 ~l~--~LD~k~~~ 95 (99)
T 1ugo_A 85 LLK--ELEQNASG 95 (99)
T ss_dssp HHH--HHHHHHSS
T ss_pred HHH--HHHhcccC
Confidence 888 56666554
No 21
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.56 E-value=49 Score=27.42 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHh
Q 018016 11 VEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (362)
Q Consensus 11 ~~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~ 59 (362)
++++=...|.+|++..-...+..+...+.|...++..+..|...|..++
T Consensus 8 eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 8 EAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677777766666666666666666666666666666555443
No 22
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=31.53 E-value=84 Score=24.96 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 018016 41 EQSLRQRALSLDSNIRRLR 59 (362)
Q Consensus 41 ~~~l~k~~~~l~~~l~r~~ 59 (362)
-+.|+.++.++..+..|++
T Consensus 46 ~e~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 46 KDVLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 23
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.40 E-value=1.3e+02 Score=29.99 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHHHHHHHHh
Q 018016 19 VVEEAKELQEAAATLINR---TSSEEQSLRQRALSLDSNIRRLR 59 (362)
Q Consensus 19 ~lee~~~Lq~~~~s~i~r---q~~e~~~l~k~~~~l~~~l~r~~ 59 (362)
.+|++++-++.++..|.+ ...+.++|..+.++++..|+.++
T Consensus 46 ~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 89 (455)
T 2dq0_A 46 EINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELE 89 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555553 12234455555665555555543
No 24
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.36 E-value=85 Score=34.84 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 018016 44 LRQRALSLDSNI 55 (362)
Q Consensus 44 l~k~~~~l~~~l 55 (362)
|.+++.++...+
T Consensus 989 L~~e~~~l~~~~ 1000 (1080)
T 2dfs_A 989 LQEEIAKLRKEL 1000 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 25
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=29.36 E-value=1.7e+02 Score=24.44 Aligned_cols=80 Identities=15% Similarity=0.247 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHhc
Q 018016 13 EEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQKAQC 92 (362)
Q Consensus 13 ~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 92 (362)
.+.+.++.+|+.+|...|.+++.+.+. +.-.-|...|.++--.+.+. +.+- +.++...=+..+++.++
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k~d------key~~L~E~L~k~LLkLD~I-eteG-----~~~vR~aRK~aVk~iQ~ 96 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKKTD------KKYLMIEEYLTKELLALDSV-DPEG-----RADVRQARRDGVRKVQT 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCSSS------HHHHHHHHHHHHHHHHHHSC-CCSS-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcch------HHHHHHHHHHHHHHHHHCCc-CcCC-----cHHHHHHHHHHHHHHHH
Confidence 467788888999999999998877432 45666666665553333432 1111 33444444566788888
Q ss_pred ccccchhhhcCC
Q 018016 93 LIYDGDASAFLP 104 (362)
Q Consensus 93 ~~~~~dme~~LP 104 (362)
.+..-|+.+.=|
T Consensus 97 ~l~~LD~k~~~~ 108 (111)
T 1uk5_A 97 ILEKLEQKASGP 108 (111)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHhcccCC
Confidence 888556555544
No 26
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=27.94 E-value=2.2e+02 Score=22.43 Aligned_cols=46 Identities=11% Similarity=0.299 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHH
Q 018016 11 VEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRR 57 (362)
Q Consensus 11 ~~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r 57 (362)
+|..+++.+-+.+.+|++....+++... ..+++++++..+...+++
T Consensus 16 ~I~~~i~~i~~~v~~l~~~~~~~L~~~~-~~~~~~~~l~~l~~~i~~ 61 (127)
T 1ez3_A 16 EIRGFIDKIAENVEEVKRKHSAILASPN-PDEKTKEELEELMSDIKK 61 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444454322 345566666666666644
No 27
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.68 E-value=3e+02 Score=28.86 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHHHhcccccchhhhcCCCCCCCccceee
Q 018016 76 DSKLADKLEEDLQKAQCLIYDGDASAFLPSKAQGAFVKMF 115 (362)
Q Consensus 76 ~~~~~~~l~~~i~~~~~~~~~~dme~~LP~k~nG~yL~li 115 (362)
|-+.-+.++++++..- -...+|.+ .=-||.++
T Consensus 174 d~~sY~~~QKQLeQv~-------a~dL~p~~-~~q~Lp~l 205 (562)
T 3ghg_A 174 DLKDYEDQQKQLEQVI-------AKDLLPSR-DRQHLPLI 205 (562)
T ss_dssp CHHHHHHHHHHHHHHH-------TTCCCCSC-CCC-----
T ss_pred chHHHHHHHHHHHHHh-------hcccCCcc-ccccchhc
Confidence 4555555555554332 23455653 44466655
No 28
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.38 E-value=50 Score=27.48 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHh
Q 018016 11 VEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLR 59 (362)
Q Consensus 11 ~~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~ 59 (362)
++++=...|.+|++..-......+...+.|...++..+..|...|..++
T Consensus 10 eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~ 58 (131)
T 3tnu_A 10 DAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQL 58 (131)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677777777776666666666666667777776666665543
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.24 E-value=1.8e+02 Score=30.40 Aligned_cols=25 Identities=8% Similarity=0.080 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018016 10 KVEEEEVERVVEEAKELQEAAATLI 34 (362)
Q Consensus 10 ~~~~~e~~~~lee~~~Lq~~~~s~i 34 (362)
+...+|++..+|++.+-.+.+..+.
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~ 87 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLT 87 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHH
Confidence 3444555555555544444444443
No 30
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=26.12 E-value=2.1e+02 Score=29.17 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhhch-----------hhHHHHHHHHHHHHHHHHHh
Q 018016 20 VEEAKELQEAAATLINRTSS-----------EEQSLRQRALSLDSNIRRLR 59 (362)
Q Consensus 20 lee~~~Lq~~~~s~i~rq~~-----------e~~~l~k~~~~l~~~l~r~~ 59 (362)
+|++++-++.++..|.+.++ +.++|..+.++++..|+.++
T Consensus 86 ~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~ 136 (501)
T 1wle_A 86 IRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLY 136 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666654221 23455566666665555543
No 31
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.06 E-value=1.8e+02 Score=29.14 Aligned_cols=41 Identities=7% Similarity=0.024 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 018016 9 EKVEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRAL 49 (362)
Q Consensus 9 ~~~~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~ 49 (362)
+..+...|+.+=+++..++....+.-+-.+.-.+.|+++++
T Consensus 62 er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~ 102 (390)
T 1deq_A 62 DQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFA 102 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444333333344444444
No 32
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.05 E-value=1.7e+02 Score=29.32 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018016 43 SLRQRALSLDSNIRRLR 59 (362)
Q Consensus 43 ~l~k~~~~l~~~l~r~~ 59 (362)
.||.-+.++...|+|++
T Consensus 138 ~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 138 LLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 33
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=25.96 E-value=2.1e+02 Score=24.48 Aligned_cols=51 Identities=8% Similarity=0.037 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhh
Q 018016 11 VEEEEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSL 61 (362)
Q Consensus 11 ~~~~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~~ 61 (362)
.+.+|++.+=+++..|...|......|+.--++.+..+..--.-++++..+
T Consensus 47 ~Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~ 97 (123)
T 4aj5_K 47 TLLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQ 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888777777666666666666666666777543
No 34
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=23.87 E-value=2.7e+02 Score=22.19 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHhcc
Q 018016 14 EEVERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQKAQCL 93 (362)
Q Consensus 14 ~e~~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~ 93 (362)
+.+.++..|+.+|+..|..++.+.+. +.-.-|...|.++--.+.+. +.+ + +++....=+..+++.++.
T Consensus 11 ~~I~~I~~ev~~L~~~V~~f~g~~~d------key~~L~E~L~k~LLkLD~I-e~e-G----~~~~R~~RK~~Vk~iQ~~ 78 (87)
T 1m62_A 11 KKIIHVLEKVQYLEQEVEEFVGKKTD------KAYWLLEEMLTKELLELDSV-ETG-G----QDSVRQARKEAVCKIQAI 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCTTS------HHHHHHHHHHHHHHHHHTTC-CCS-S----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcch------HHHHHHHHHHHHHHHHHCCc-CcC-C----cHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999987432 45566666665543333432 111 1 333444444556777777
Q ss_pred cc
Q 018016 94 IY 95 (362)
Q Consensus 94 ~~ 95 (362)
+.
T Consensus 79 l~ 80 (87)
T 1m62_A 79 LE 80 (87)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 35
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=23.67 E-value=2.7e+02 Score=24.43 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHH
Q 018016 18 RVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRL 58 (362)
Q Consensus 18 ~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~ 58 (362)
++++++.+--..+..-|++-+.|...++..+...++.|+|-
T Consensus 46 gKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 46 GKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 45666666666677778888887777777777777777664
No 36
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.65 E-value=2.3e+02 Score=22.66 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=15.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018016 3 EKRSNCEKVEEEEVERVVEEAKELQEAA 30 (362)
Q Consensus 3 ~~~~~~~~~~~~e~~~~lee~~~Lq~~~ 30 (362)
|+|.-++++..+|-+.+.+++.+|++..
T Consensus 35 E~RR~AL~eaL~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 35 EKRRKALYEALKENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554443
No 37
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.86 E-value=2.1e+02 Score=21.95 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHH
Q 018016 17 ERVVEEAKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRL 58 (362)
Q Consensus 17 ~~~lee~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~ 58 (362)
+...||+.+||.+.++..++... .+.++.+|+..+=+|
T Consensus 13 d~i~~el~eLq~~~~~~~aki~e----~krkl~eLsHRiLkv 50 (65)
T 3t97_B 13 DIISEDISELQKNQTTTMAKIAQ----YKRKLMDLSHRTLQV 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHH
Confidence 34556777788777776666532 456888888887555
No 38
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.69 E-value=3.8e+02 Score=23.34 Aligned_cols=13 Identities=8% Similarity=-0.028 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 018016 13 EEEVERVVEEAKE 25 (362)
Q Consensus 13 ~~e~~~~lee~~~ 25 (362)
.++++++.+|+..
T Consensus 13 ae~ad~KyeEvaR 25 (155)
T 2efr_A 13 LSKNYHLENEVAR 25 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 4444444444433
No 39
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=22.27 E-value=2.2e+02 Score=20.35 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 018016 14 EEVERVVEEAKELQEAAATLINRT 37 (362)
Q Consensus 14 ~e~~~~lee~~~Lq~~~~s~i~rq 37 (362)
.|++.+.+.+..+.+.....+..+
T Consensus 37 dEi~~l~~~~n~m~~~l~~~~~~~ 60 (114)
T 3zcc_A 37 DEIGILAKSIERLRRSLKQLADDG 60 (114)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665555555443
No 40
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.90 E-value=2.3e+02 Score=28.88 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 018016 241 WAMMQGVAMLLQNRYQR 257 (362)
Q Consensus 241 fs~yqs~VQ~lQ~~YQr 257 (362)
...+..+++....-||+
T Consensus 313 ~~e~e~ml~~~e~il~~ 329 (485)
T 3qne_A 313 WEEFDRMIGCSEEFYQS 329 (485)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666655555555
No 41
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.90 E-value=45 Score=21.51 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 018016 243 MMQGVAMLLQNRYQRQ 258 (362)
Q Consensus 243 ~yqs~VQ~lQ~~YQrg 258 (362)
++--++|++|-||||.
T Consensus 3 fMkDvlql~qQy~qsh 18 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567899999999985
No 42
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=21.74 E-value=1.8e+02 Score=24.50 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=35.0
Q ss_pred hchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHhcccc
Q 018016 37 TSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLEEDLQKAQCLIY 95 (362)
Q Consensus 37 q~~e~~~l~k~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 95 (362)
+..+.++|++++.+++..+..+.+++++. ++ -++.++++...-....-.|.
T Consensus 13 ~aa~L~~l~~ql~~l~~~l~~l~~~LP~~---~e-----m~~LL~~i~~~~~~~GL~l~ 63 (147)
T 2rjz_A 13 QAANLEAYKAQMKEMEESFGALLRQLPSD---TE-----VPGLLEDITRTGLGSGLEFE 63 (147)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHTTTGG---GH-----HHHHHHHHHHHHHHTTCEEE
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhCCCh---hH-----HHHHHHHHHHHHHhCCCEEE
Confidence 35567889999999999998888777742 11 35667776655555555554
No 43
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=20.92 E-value=4e+02 Score=23.99 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=54.6
Q ss_pred hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhhhhhccccccccccccCHHHHHHHH
Q 018016 6 SNCEKVEEEEVERVVEE-AKELQEAAATLINRTSSEEQSLRQRALSLDSNIRRLRSLLHSSISSTNNLLRFDSKLADKLE 84 (362)
Q Consensus 6 ~~~~~~~~~e~~~~lee-~~~Lq~~~~s~i~rq~~e~~~l~k~~~~l~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (362)
.-|-+++++|.+++.|| -+-|.++|... +=-- -++.|+..+++|-..|..+..+--. -...+..-.
T Consensus 23 ~kA~e~L~~E~e~k~eeKkkiLaER~kPL-nid~-se~~L~e~ckELh~~I~~LEeEKYD-----------lE~kvkkq~ 89 (182)
T 1ytz_I 23 QLAVTEIEKEAAAKEVEKQNYLAEHSPPL-SLPG-SMQELQELSKKLHAKIDSVDEERYD-----------TEVKLQKTN 89 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCC-CCCC-SHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHHhh-----------HHHHHHhhh
Confidence 45778899999999888 56688888443 3222 5678999999999998776522110 012244445
Q ss_pred HHHHHHhcccccchhhh
Q 018016 85 EDLQKAQCLIYDGDASA 101 (362)
Q Consensus 85 ~~i~~~~~~~~~~dme~ 101 (362)
-+|.+.+..+. |+.+
T Consensus 90 yEI~dL~~rVn--DLrG 104 (182)
T 1ytz_I 90 KELEDLSQKLF--DLRG 104 (182)
T ss_dssp HHHHHHTTTTG--GGTC
T ss_pred HHHHHHHHHHH--HHHh
Confidence 66788888888 7755
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.50 E-value=1.8e+02 Score=36.43 Aligned_cols=17 Identities=0% Similarity=0.132 Sum_probs=12.7
Q ss_pred cccccchhhhhhhHHHH
Q 018016 127 DVQLKVKEEYNSYRDRT 143 (362)
Q Consensus 127 ~~kf~yKdEYEkFKl~~ 143 (362)
.+|-++++.-+.|+...
T Consensus 2084 ~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2084 SERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHH
Confidence 46778888888888654
No 45
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.21 E-value=1.1e+02 Score=30.03 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHHHHHHHH
Q 018016 20 VEEAKELQEAAATLINRTS---SEEQSLRQRALSLDSNIRRL 58 (362)
Q Consensus 20 lee~~~Lq~~~~s~i~rq~---~e~~~l~k~~~~l~~~l~r~ 58 (362)
+|++++-++.++..|.+.+ .+.++|..+.++++..|+.+
T Consensus 46 ~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 87 (425)
T 2dq3_A 46 LEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRL 87 (425)
T ss_dssp HHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444311 22334444444444444443
No 46
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=20.09 E-value=35 Score=22.70 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018016 11 VEEEEVERVVEEAKELQEAAATLI 34 (362)
Q Consensus 11 ~~~~e~~~~lee~~~Lq~~~~s~i 34 (362)
++++.|+.+++|+++..+.|..++
T Consensus 4 sv~~QV~~LI~~At~~~NL~~my~ 27 (33)
T 1w1n_A 4 DVPEQVDKLIQQATSIERLCQHYI 27 (33)
T ss_dssp CSTHHHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHhcCHHHHHHHhh
Confidence 357889999999999999998775
Done!