BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018017
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 148/357 (41%), Gaps = 37/357 (10%)
Query: 2 GFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAF-RL 60
GF F E H+KYG V + G +L +I +P +IK +L K R F +
Sbjct: 35 GFCMFD---MECHKKYGKVWGFYDGQQPVL-AITDPDMIKTVLVKECYSVFTNRRPFGPV 90
Query: 61 AFGQSSLFASTFDRVKKRRVTLS-TELNGRLLERGKVIPARVVDCLMERIHDILGKGN-I 118
F +S++ + + K+ R LS T +G+L E +I A+ D L+ + G +
Sbjct: 91 GFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPII-AQYGDVLVRNLRREAETGKPV 149
Query: 119 SCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDAC-------FWASYSVTP 171
+ K + + ++ +T FG + + ++ F+ K F+ S +V P
Sbjct: 150 TLKDVFGAYSMDVITSTSFGVNIDSLNNP---QDPFVENTKKLLRFDFLDPFFLSITVFP 206
Query: 172 FWKRGFWRYQHLCEKLKCLTQDIIQQCQR--NCKLISGMDHNFDNETAYKRMEAALGGSS 229
F ++C + +T + + +R +L H D ++ + +
Sbjct: 207 FLI-PILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVD------FLQLMIDSQN 259
Query: 230 SFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEI 289
S + E L E ++I+ +F GY TT+ ++ I+ LATH D+Q+K+ EI
Sbjct: 260 SKET----ESHKALSDLELVAQSII-FIFAGYETTSSVLSFIMYELATHPDVQQKLQEEI 314
Query: 290 IMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLF 346
+V M L + E+ RL P L+R K E +N +F
Sbjct: 315 DAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVE-----INGMF 366
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 148/357 (41%), Gaps = 37/357 (10%)
Query: 2 GFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAF-RL 60
GF F E H+KYG V + G +L +I +P +IK +L K R F +
Sbjct: 36 GFCMFD---MECHKKYGKVWGFYDGQQPVL-AITDPDMIKTVLVKECYSVFTNRRPFGPV 91
Query: 61 AFGQSSLFASTFDRVKKRRVTLS-TELNGRLLERGKVIPARVVDCLMERIHDILGKGN-I 118
F +S++ + + K+ R LS T +G+L E +I A+ D L+ + G +
Sbjct: 92 GFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPII-AQYGDVLVRNLRREAETGKPV 150
Query: 119 SCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDAC-------FWASYSVTP 171
+ K + + ++ +T FG + + ++ F+ K F+ S +V P
Sbjct: 151 TLKDVFGAYSMDVITSTSFGVNIDSLNNP---QDPFVENTKKLLRFDFLDPFFLSITVFP 207
Query: 172 FWKRGFWRYQHLCEKLKCLTQDIIQQCQR--NCKLISGMDHNFDNETAYKRMEAALGGSS 229
F ++C + +T + + +R +L H D ++ + +
Sbjct: 208 FLI-PILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVD------FLQLMIDSQN 260
Query: 230 SFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEI 289
S + E L E ++I+ +F GY TT+ ++ I+ LATH D+Q+K+ EI
Sbjct: 261 SKET----ESHKALSDLELVAQSII-FIFAGYETTSSVLSFIMYELATHPDVQQKLQEEI 315
Query: 290 IMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLF 346
+V M L + E+ RL P L+R K E +N +F
Sbjct: 316 DAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVE-----INGMF 367
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 148/357 (41%), Gaps = 37/357 (10%)
Query: 2 GFICFSEVLAESHEKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRAF-RL 60
GF F E H+KYG V + G +L +I +P +IK +L K R F +
Sbjct: 34 GFCMFD---MECHKKYGKVWGFYDGQQPVL-AITDPDMIKTVLVKECYSVFTNRRPFGPV 89
Query: 61 AFGQSSLFASTFDRVKKRRVTLS-TELNGRLLERGKVIPARVVDCLMERIHDILGKGN-I 118
F +S++ + + K+ R LS T +G+L E +I A+ D L+ + G +
Sbjct: 90 GFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPII-AQYGDVLVRNLRREAETGKPV 148
Query: 119 SCKMISQHMAFSLLGATIFGDEFFAWSKATVYEELFMTIAKDAC-------FWASYSVTP 171
+ K + + ++ +T FG + + ++ F+ K F+ S +V P
Sbjct: 149 TLKDVFGAYSMDVITSTSFGVNIDSLNNP---QDPFVENTKKLLRFDFLDPFFLSITVFP 205
Query: 172 FWKRGFWRYQHLCEKLKCLTQDIIQQCQR--NCKLISGMDHNFDNETAYKRMEAALGGSS 229
F ++C + +T + + +R +L H D ++ + +
Sbjct: 206 FLI-PILEVLNICVFPREVTNFLRKSVKRMKESRLEDTQKHRVD------FLQLMIDSQN 258
Query: 230 SFDALVSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEI 289
S + E L E ++I+ +F GY TT+ ++ I+ LATH D+Q+K+ EI
Sbjct: 259 SKET----ESHKALSDLELVAQSII-FIFAGYETTSSVLSFIMYELATHPDVQQKLQEEI 313
Query: 290 IMARKGLGEKDQQSVDNMLLLLATIYESARLLPAGPFLQRCSLKHGEAFLSLVNSLF 346
+V M L + E+ RL P L+R K E +N +F
Sbjct: 314 DAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVE-----INGMF 365
>pdb|4DVQ|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4FDH|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
Length = 483
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 263 TTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLLATIYESARLLP 322
TTA + L LA + D+Q+ + E + A + E Q++ + LL A + E+ RL P
Sbjct: 292 TTAFPLLMTLFELARNPDVQQILRQESLAAAASISEHPQKATTELPLLRAALKETLRLYP 351
Query: 323 AGPFLQRC 330
G FL+R
Sbjct: 352 VGLFLERV 359
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 15 EKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRA----FRLAFGQSSLFAS 70
E+YG V + LGP +++V A+ + ++ +AE+ +GR F F + S
Sbjct: 41 ERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEE---FSGRGEQATFDWVFKGYGVVFS 97
Query: 71 TFDRVKK-RRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKG--NISCKMISQHM 127
+R K+ RR +++T + + +RG I R+ + I + G G NI
Sbjct: 98 NGERAKQLRRFSIATLRDFGVGKRG--IEERIQEEAGFLIDALRGTGGANIDPTFFLSRT 155
Query: 128 AFSLLGATIFGDEF 141
+++ + +FGD F
Sbjct: 156 VSNVISSIVFGDRF 169
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 15 EKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRA----FRLAFGQSSLFAS 70
E+YG V + LGP +++V A+ + ++ +AE+ +GR F F + S
Sbjct: 41 ERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEE---FSGRGEQATFDWVFKGYGVVFS 97
Query: 71 TFDRVKK-RRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKG--NISCKMISQHM 127
+R K+ RR +++T + + +RG I R+ + I + G G NI
Sbjct: 98 NGERAKQLRRFSIATLRDFGVGKRG--IEERIQEEAGFLIDALRGTGGANIDPTFFLSRT 155
Query: 128 AFSLLGATIFGDEF 141
+++ + +FGD F
Sbjct: 156 VSNVISSIVFGDRF 169
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 15 EKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRA----FRLAFGQSSLFAS 70
E+YG V + LGP +++V A+ + ++ +AE+ +GR F F + S
Sbjct: 41 ERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEE---FSGRGEQATFDWVFKGYGVVFS 97
Query: 71 TFDRVKK-RRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKG--NISCKMISQHM 127
+R K+ RR +++T + + +RG I R+ + I + G G NI
Sbjct: 98 NGERAKQLRRFSIATLRDFGVGKRG--IEERIQEEAGFLIDALRGTGGANIDPTFFLSRT 155
Query: 128 AFSLLGATIFGDEF 141
+++ + +FGD F
Sbjct: 156 VSNVISSIVFGDRF 169
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 15 EKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRA----FRLAFGQSSLFAS 70
E+YG V + LGP +++V A+ + ++ +AE+ +GR F F + S
Sbjct: 41 ERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEE---FSGRGEQATFDWVFKGYGVVFS 97
Query: 71 TFDRVKK-RRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKG--NISCKMISQHM 127
+R K+ RR +++T + + +RG I R+ + I + G G NI
Sbjct: 98 NGERAKQLRRFSIATLRDFGVGKRG--IEERIQEEAGFLIDALRGTGGANIDPTFFLSRT 155
Query: 128 AFSLLGATIFGDEF 141
+++ + +FGD F
Sbjct: 156 VSNVISSIVFGDRF 169
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 12/134 (8%)
Query: 15 EKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRA----FRLAFGQSSLFAS 70
E+YG V + LGP +++V A+ + ++ +AE+ +GR F F + S
Sbjct: 41 ERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEE---FSGRGEQATFDWVFKGYGVVFS 97
Query: 71 TFDRVKK-RRVTLSTELNGRLLERGKVIPARVVDCLMERIHDILGKG--NISCKMISQHM 127
+R K+ RR +++T + + +RG I R+ + I + G G NI
Sbjct: 98 NGERAKQLRRFSIATLRDFGVGKRG--IEERIQEEAGFLIDALRGTGGANIDPTFFLSRT 155
Query: 128 AFSLLGATIFGDEF 141
+++ + +FGD F
Sbjct: 156 VSNVISSIVFGDRF 169
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 260 GYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLL-ATIYESA 318
G TT +V LA L + +++K+Y EI G S N LLLL ATI E
Sbjct: 285 GVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQ-NVGFSRTPTISDRNRLLLLEATIREVL 343
Query: 319 RLLPAGPFL 327
RL P P L
Sbjct: 344 RLRPVAPML 352
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 15 EKYGSVVKLWLGPTKLLVSIKEPALIKEMLSKAEDKPPLTGRA----FRLAFGQSSLFAS 70
E+YG V + LGP +++V A+ + ++ +AE+ +GR F F + S
Sbjct: 41 ERYGPVFTIHLGPRRVVVLCGHDAVKEALVDQAEE---FSGRGEQATFDWLFKGYGVAFS 97
Query: 71 TFDRVKK-RRVTLSTELNGRLLERGKVIPARVVD---CLMERIHDILGKGNISCKMISQH 126
+R K+ RR +++T + +RG I R+ + L++ + G NI
Sbjct: 98 NGERAKQLRRFSIATLRGFGVGKRG--IEERIQEEAGFLIDALRGTHG-ANIDPTFFLSR 154
Query: 127 MAFSLLGATIFGDEF 141
+++ + +FGD F
Sbjct: 155 TVSNVISSIVFGDRF 169
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 252 NIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSEIIMARKGLGEKDQQSVDNMLLLL 311
NI ++ G TT+ + L +A ++QE + E++ AR+ E D + M+ LL
Sbjct: 280 NITEMLAGGVNTTSMTLQWHLYEMARSLNVQEMLREEVLNARRQ-AEGDISKMLQMVPLL 338
Query: 312 -ATIYESARLLPAGPFLQR 329
A+I E+ RL P LQR
Sbjct: 339 KASIKETLRLHPISVTLQR 357
>pdb|1FHI|A Chain A, Substrate Analog (Ib2) Complex With The Fragile Histidine
Triad Protein, Fhit
pdb|4FIT|A Chain A, Fhit-Apo
pdb|6FIT|A Chain A, Fhit-Transition State Analog
Length = 147
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 75 VKKRRVTLSTELNGRLLERGKVIPARVVDCLM---ERIHDI 112
+K V L TEL+ L+ R V+P V+ C + ER HD+
Sbjct: 10 IKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDL 50
>pdb|2FHI|A Chain A, Substrate Analog (Ib2) Complex With The His 96 Asn
Substitution Of The Fragile Histidine Triad Protein,
Fhit
Length = 147
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 75 VKKRRVTLSTELNGRLLERGKVIPARVVDCLM---ERIHDI 112
+K V L TEL+ L+ R V+P V+ C + ER HD+
Sbjct: 10 IKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDL 50
>pdb|3FIT|A Chain A, Fhit (Fragile Histidine Triad Protein) In Complex With
AdenosineSULFATE AMP ANALOG
pdb|1FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|2FIT|A Chain A, Fhit (Fragile Histidine Triad Protein)
pdb|5FIT|A Chain A, Fhit-Substrate Analog
Length = 147
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 75 VKKRRVTLSTELNGRLLERGKVIPARVVDCLM---ERIHDI 112
+K V L TEL+ L+ R V+P V+ C + ER HD+
Sbjct: 10 IKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDL 50
>pdb|2YY4|A Chain A, Crystal Structure Of Ms8104
pdb|2YY4|B Chain B, Crystal Structure Of Ms8104
Length = 316
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 194 IIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALVSQEPSGYLQAREEPCRNI 253
+I +NC L +D + YK + G + S A + PSG Q P I
Sbjct: 77 VIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTI 136
Query: 254 MGVMFHGYLTTAGLVG 269
G +G +AG VG
Sbjct: 137 KGSFLNG---SAGSVG 149
>pdb|1Z1J|A Chain A, Crystal Structure Of Sars 3clpro C145a Mutant
pdb|1Z1J|B Chain B, Crystal Structure Of Sars 3clpro C145a Mutant
Length = 306
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 194 IIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALVSQEPSGYLQAREEPCRNI 253
+I +NC L +D + YK + G + S A + PSG Q P I
Sbjct: 77 VIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTI 136
Query: 254 MGVMFHGYLTTAGLVG 269
G +G +AG VG
Sbjct: 137 KGSFLNG---SAGSVG 149
>pdb|2RA5|A Chain A, Crystal Structure Of The Putative Transcriptional
Regulator From Streptomyces Coelicolor
Length = 247
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 250 CRNIMGVMFHGYLTTAGLVGNI--------LARLATHQDIQEKIYSEIIMARKGLGEKDQ 301
+ + + HG LT L+GN L+R Q IQ + +++ R+G+G +
Sbjct: 22 SQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRGVGTQVV 81
Query: 302 QSVDNMLLLLATIYE 316
S L L+++Y+
Sbjct: 82 HSKVRRPLELSSLYD 96
>pdb|3A4G|A Chain A, Structure Of Cytochrome P450 Vdh From Pseudonocardia
Autotrophica (Trigonal Crystal Form)
pdb|3A4H|A Chain A, Structure Of Cytochrome P450 Vdh From Pseudonocardia
Autotrophica (Orthorhombic Crystal Form)
Length = 411
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 235 VSQEPSGYLQAREEPCRNIMGVMFHGYLTTAGLVGNILARLATHQDIQEKIYSE 288
VS E G ++EE M ++ G+ TT L+GN + L TH D Q K+ +E
Sbjct: 213 VSDE-DGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPD-QRKLLAE 264
>pdb|3F9E|A Chain A, Crystal Structure Of The S139a Mutant Of Sars-Coronovirus
3c-Like Protease
Length = 308
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 28/74 (37%)
Query: 194 IIQQCQRNCKLISGMDHNFDNETAYKRMEAALGGSSSFDALVSQEPSGYLQAREEPCRNI 253
+I +NC L +D + YK + G + S A + PSG Q P I
Sbjct: 79 VIGHSMQNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTI 138
Query: 254 MGVMFHGYLTTAGL 267
G +G + G
Sbjct: 139 KGAFLNGSCGSVGF 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,421,634
Number of Sequences: 62578
Number of extensions: 397611
Number of successful extensions: 1148
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 23
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)